Citrus Sinensis ID: 003302
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | 2.2.26 [Sep-21-2011] | |||||||
| O42832 | 802 | AdoMet-dependent rRNA met | yes | no | 0.918 | 0.952 | 0.363 | 1e-123 | |
| Q5BH88 | 806 | AdoMet-dependent rRNA met | yes | no | 0.883 | 0.911 | 0.368 | 1e-120 | |
| Q52C47 | 865 | AdoMet-dependent rRNA met | N/A | no | 0.924 | 0.889 | 0.347 | 1e-113 | |
| Q5RAS1 | 841 | pre-rRNA processing prote | yes | no | 0.887 | 0.877 | 0.331 | 1e-108 | |
| Q6CV12 | 833 | AdoMet-dependent rRNA met | yes | no | 0.913 | 0.912 | 0.341 | 1e-104 | |
| P25582 | 841 | 27S pre-rRNA (guanosine(2 | yes | no | 0.855 | 0.846 | 0.321 | 1e-103 | |
| Q59KF3 | 845 | AdoMet-dependent rRNA met | N/A | no | 0.866 | 0.853 | 0.335 | 1e-100 | |
| Q6BNQ8 | 831 | AdoMet-dependent rRNA met | yes | no | 0.864 | 0.865 | 0.324 | 2e-93 | |
| Q4WVH3 | 795 | AdoMet-dependent rRNA met | yes | no | 0.560 | 0.586 | 0.401 | 4e-93 | |
| Q9P6V8 | 831 | AdoMet-dependent rRNA met | N/A | no | 0.561 | 0.561 | 0.392 | 1e-91 |
| >sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 307/844 (36%), Positives = 482/844 (57%), Gaps = 80/844 (9%)
Query: 1 MGKVK---GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWM 57
MGK + K RLDK+Y+LAKE GYRSRA++KLVQL+ K+SFL + ++DLCAAPGGW+
Sbjct: 1 MGKSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWL 60
Query: 58 QVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117
QVA + GSL++G+DL PI PI + +DIT +CR++++ ++ D+VLH
Sbjct: 61 QVASKTCKPGSLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKA---DVVLH 117
Query: 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177
DG+PNVG AW Q+A Q LV+ S+KLA +FL GTFVTKVFRS+DY+++L+ KQLF
Sbjct: 118 DGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFN 177
Query: 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVD--VLRGTK 235
KVE KP +SR+ SAEI+++ YKAP K+DPR D + +F+ EP VD V K
Sbjct: 178 KVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTDPRTVFEEVQEPVTNVDAKVFHPEK 237
Query: 236 QKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTTE 293
+KR R+GY D D TL K LA++F+ +N+P++ILG+ I F D C + + ++TTE
Sbjct: 238 RKRSREGYADDDYTLHKTVLASEFVTANDPIQILGTSAEIVFPKDDEECQRLYNLDVTTE 297
Query: 294 EVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVL 353
E+ C DL+VLGK++F+ +L+WR++I+ +K V E E D + R+
Sbjct: 298 EILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKK--VEDEQKTVVEEIPEMDEEERLD 355
Query: 354 NEMEELKYAMDQRKKREKKLLAKKRAKDKARKATG----MQIDVMQDDYTDHELFSLSSI 409
E+++L A + KRE++ +++ ++ R G M I + + + LF L++
Sbjct: 356 QELQDLSEAERVKLKRERRKANQRKQREIVRMQMGMLAPMDIGLEHEAMGEDSLFGLATA 415
Query: 410 K--GKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLD 467
+ G K+L ++ +S DE + D + + DSD+ER ++LE LD
Sbjct: 416 EKHGLKEL-------ENGTLPVTESVDEEVSTDNE----VEYDSDDER----DRLEADLD 460
Query: 468 QAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQ------GDLD 521
Y +Y ++ S + + R KKA D DE+ + + +SD Q D
Sbjct: 461 SMYSDYTKRKAESDV-KYRVKKARGDLD-----DEEWNGIDNGTESDDSQIAETNFATPD 514
Query: 522 ANPLMVP-LDDGIRPTQEEITNK---WFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKH 577
+ L LD G T++ ++ K +F Q+IF + +++ D V+ +
Sbjct: 515 KDRLTTSLLDKG--STKDGLSRKARMFFDQDIF-DGIEDAD---------ADVEIMSMNR 562
Query: 578 SIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTK-- 635
+ +K + ++A+ S +Q + E+VP A DD + +S+++E + +
Sbjct: 563 AAIKKREAELASQNNDDGSKGDQSEDSNDHIEVVPVASAHDEDDDWNSDSDNDENNVEIV 622
Query: 636 -AEILACAKKML-RKKQREQILDDAYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEI 692
AE + A+ + R+K + ++D+ YNR+ F +GLPDWFL+EE + +P+TKE +
Sbjct: 623 TAEAMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAV 682
Query: 693 AAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQ 752
A++ + K ++ARP KKV EA+ RKK +++L++V KKA IS+ D+++ K K+I +
Sbjct: 683 LALREKMKALNARPIKKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEISR 742
Query: 753 LYKSAVPKRPKKE--YVVAK---KGVQVR--AGKGKV-LVDPRMKKDSRTHGSGKARKGG 804
L A +PK + VVAK KG++ R KGK +VD RMKKD R A+K
Sbjct: 743 LVSRATKSKPKAKPTLVVAKGPNKGLKSRPKGVKGKYKMVDSRMKKDLR------AQKRL 796
Query: 805 SKKG 808
+KKG
Sbjct: 797 AKKG 800
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spb1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 311/845 (36%), Positives = 473/845 (55%), Gaps = 110/845 (13%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+RA++KLVQL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
SL++G+DL PI PI ++ +QDIT +CRA ++ ++ D VLHDG+PNVG
Sbjct: 68 AQSLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A SQ LV++S+KLAT+FL GTFVTKVFRS+DY+ +L+ KQLF VE KP
Sbjct: 125 AWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ YKAP +IDP+ LD K++F P V K+KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGYKAPKRIDPKFLDSKHVFAELADPTPNNEAKVFNPEKKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K T+FI + +P+ ILGS ++F GD A + + TT+E++
Sbjct: 245 EEGDWTQFKEIPVTEFINTTDPIAILGSCNKLSFQQQPGGDLALATLDRLPETTDEIRNC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEK-------ATVPASASAPTEGENEEDADNR 351
C+DL+VLGK++F++LL+WR+++++ F K + AP + E +
Sbjct: 305 CEDLKVLGKKEFRNLLRWRLKVREKFGLVVKKGQAKDDEAEEVAEIAPMDDELAIQEELL 364
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQ-----DDYTDHELFSL 406
L E E + ++RK+ E+K K+ + + T M I + Q +D T FSL
Sbjct: 365 RLKEKESARSKKERRKENERK--RKEIVRMQMHMTTPMDIGMEQLGPGGEDAT----FSL 418
Query: 407 ---------SSIKGKKDLAAVEYDDDDVNAAA--EDSEDERPNRDTQEHVSSDIDSDEER 455
+++ K+LA +E + ++ + +DS+DE
Sbjct: 419 KRAEKAGAAAAMASGKELAVIESESEESESETEYDDSDDE-------------------- 458
Query: 456 RKYDEQLEEVLDQAYENYVAKR--GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDS 513
++LE LD YE Y ++ S ++ K+A+K Y E DE E + +
Sbjct: 459 ---GDRLERELDSLYEQYQERKEDKDSKLRAKKARKDY-------EADEWEGFSDSDKEG 508
Query: 514 DKDQGDLDANPLMVPLDDGIRPTQEEITNK---WFSQEIF--AEAVQNGDLGKLGSEDET 568
D+ D +A P VP + PT ++N +F Q+IF + V++ + G+ + T
Sbjct: 509 SDDEED-EAKP-NVP----VVPTNGALSNNAALFFDQDIFQGLDDVEDEEDEAEGTNNMT 562
Query: 569 QVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESE 628
+++ E+ E+ + K ++AA K +V E P DSSDD D E
Sbjct: 563 VANEREEQQEEEEEEQPK--SEAAPEK--KKKVKETANS-----KPSEDSSDDEYEDTDE 613
Query: 629 --------DEEVDTKAEILACAKKMLRKKQREQ-ILDDAYNRYMFDD-DGLPDWFLEEER 678
D ++ T AE +A A++M +++ Q + DD +NRY F D DGLP+WFL++E
Sbjct: 614 PRKKNGQLDIDIIT-AEAMALAQQMATGEKKSQDVFDDGFNRYAFRDVDGLPEWFLDDEN 672
Query: 679 RHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQ 738
+H + RP+TK AA++ +++ I+ARP KKV EAK RKK A +++EK+RKK+ +++D
Sbjct: 673 KHSKPNRPITKAAAAAIQEKWRAINARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADD 732
Query: 739 ADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAKKGVQVRAG-----KGKV-LVDPRMKK 790
+S+R K + I ++ A K+PK+ + VVAK G + +G KGK +VD RMKK
Sbjct: 733 ETMSERDKAQAIARMMSRAAKKKPKQNVKLVVAKGGNRGISGRPKGVKGKYKIVDARMKK 792
Query: 791 DSRTH 795
D R
Sbjct: 793 DVRAQ 797
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 300/864 (34%), Positives = 471/864 (54%), Gaps = 95/864 (10%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+Y+LAKE GYR+RA++KL+QL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
V SL++G+DL PI PI ++ + DIT +CRA +++ ++ D VLHDG+PNVG
Sbjct: 68 VSSLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q++ +Q L + ++KLAT+FL GTFVTKVFRS+DY+S+L+ QLF+KVE KP
Sbjct: 125 AWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+ LD + +F P V + +KR RDGY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKFLDPRAVFAELADPTPNNEAKVYKPEIKKRKRDGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K A +FI S +P+ ILGS ++ GD A + ++ TT+E++
Sbjct: 245 EEGDYTQYKELPAYEFIQSTDPIAILGSTNRLSLEQSKNGDVALAVLEKLPETTDEIRTC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEE--------DADN 350
C DL+VLG+++FK LLKWR+ +++ K +V A E D +
Sbjct: 305 CADLKVLGRKEFKLLLKWRLAVREKLGFPTKKSVKKEEEAAAAVAAAEEVAKIESMDEEM 364
Query: 351 RVLNEMEELKYAMDQRKKREKKLLAKKRAKDKAR----KATGMQIDVMQDDYTDHE-LFS 405
R+ +E+E+LK +KKRE++ +++ KD R M I V Q + +F+
Sbjct: 365 RIQHELEKLKERNSTKKKRERRKENERKQKDIVRMQMHMVAPMDIGVEQAGPEGEDAMFA 424
Query: 406 LSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEV 465
L +++ K D+ V A+ D++ +D + S ++D+E + ++LE
Sbjct: 425 LRAVE-KGDVMRRLAKGKMVVASEADAK-----KDRDSGIGSSGETDDESDEELDRLETE 478
Query: 466 LDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDAN-- 523
LD Y+ + ++ S + RAKKA Q GD DE+ S + D+ D+
Sbjct: 479 LDDMYDQFRERKAASDA-KYRAKKAR----QARNGDGDEEWEGVSDNEKADEISDDSELE 533
Query: 524 -----------------PLMVPLDDGIRPTQEEITNK----WFSQEIFAEAVQNGDL--- 559
L+ LD P+ +K +F+Q+IF E +GD+
Sbjct: 534 EESSGDSDDEDDTAPRKSLLTDLD--TTPSDNSGLSKRARAFFNQDIFKEL--DGDMDEP 589
Query: 560 ------GKLGSED-----ETQVDKQAEKHS------IPEKAKQKMANDAAGPKSTHNQVS 602
L ED E V K K + K K A A +
Sbjct: 590 MDEELRAALAGEDEDADMEDTVSKADSKKTKEKTADKKAAKKAKKAAQKAQQVKDDDSDD 649
Query: 603 EVEGDFEIVPAPGADSSDDS---SSDESEDEEVDTKAEILACAKKMLR-KKQREQILDDA 658
E +G FE+V + D +D + D D ++ T AE + A ++ +K ++DD
Sbjct: 650 ESDGGFEVVKSGKEDDWEDEDKRTKDGRLDIDIIT-AEAMTLAHQLATGQKSSHDVIDDG 708
Query: 659 YNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARK 717
+N++ F D +GLP+WFL++E +H + +P+TK AA+K + + +ARP KKV EAK RK
Sbjct: 709 FNKHAFKDREGLPEWFLDDETKHDKPQKPITKAAAAAIKEKMRAFNARPIKKVREAKGRK 768
Query: 718 KRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAK---KG 772
K A ++LEK++KK++++ ++ ++++ K + I +L + A K+PK+ + VVAK +G
Sbjct: 769 KMKAAQRLEKLKKKSDLLVNEEGMTEKEKAESIAKLLRKATKKKPKQAVKVVVAKGANRG 828
Query: 773 VQVRAG--KGKV-LVDPRMKKDSR 793
++ R KG+ +VDPRMKK+ R
Sbjct: 829 IKGRPQGIKGRYKIVDPRMKKEMR 852
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 291/877 (33%), Positives = 457/877 (52%), Gaps = 139/877 (15%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G+F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF-QGSVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F + V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I D + H TTE+++ C
Sbjct: 239 EGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDD---EELAQHPATTEDIRVCCQ 295
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPA-------------SASAPTEGENEED 347
D+RVLG+++ + LL WR ++++ + K A + T G E+
Sbjct: 296 DIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGNEEDSTAGTTEQP 355
Query: 348 AD--------NRVLNEMEELKYA----------MDQRKKREKKLLAKKRAKDKARKATGM 389
+ N+ L EM+ + A +QRK+RE+ L G+
Sbjct: 356 SKEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKM--------DLPGV 407
Query: 390 QIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDI 449
I D + +FSL +I+G++ L V D +AA+ + P D SD+
Sbjct: 408 SI----ADEGETGMFSLRTIRGQQLLEEVTQGD---MSAADTFLSDLPRDDI---YVSDV 457
Query: 450 DSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQ-RKRAKKAYAQEDQLSEGDEDEDTMH 508
+ D + D E RG ++ +KR + Q+
Sbjct: 458 EDD------GDDTSLDSDLDPEELAGVRGHQGLRDQKRVRLTEVQD-------------- 497
Query: 509 TSYDSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGD------LGKL 562
DK++ + + NPL+VPL++ QEE N WFS+ FA + D +L
Sbjct: 498 -----DKEEEEEEENPLLVPLEEKA-VLQEEQANLWFSKGSFAGIEDDADEALEISQAQL 551
Query: 563 GSEDETQVDKQAEKHSIPEKAKQKMANDA---AGPKSTH-----NQVSEVEGD------- 607
E + + +Q ++P K ++ + PK T + ++G+
Sbjct: 552 LFESQRKGRQQQLPQTLPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLKGEEKDGISD 611
Query: 608 ------------FEIVPAP----GADSSDDSS-----SDESEDEEVDTKAEILACAKKML 646
+E V G S DD D ++ +D + L
Sbjct: 612 SDSSSSSEEEESWEPVRGKKRSRGPKSDDDGFEIVPIEDPAKHRILDPEGLALGAVIASS 671
Query: 647 RKKQREQILDDAYNRYMFDDD--GLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDA 704
+K +R+ ++D+++NRY F++D LP+WF++EE++HR P+ K+E+ + +++EI+A
Sbjct: 672 KKAKRD-LIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPIGKKEMEHYRKRWREINA 730
Query: 705 RPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK 764
RP KKVAEAKARKKR +++LE+ RKKA + + DIS+R K Q+ LYK A + K+
Sbjct: 731 RPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKR 790
Query: 765 E--YVVAKKGV--QVRAGKGKV----LVDPRMKKDSR 793
YVVAKKGV +VR G +VD RMKKD R
Sbjct: 791 HVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQR 827
|
Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 289/846 (34%), Positives = 446/846 (52%), Gaps = 86/846 (10%)
Query: 3 KVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGWMQVAV 61
K K RLDKYY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W QVA
Sbjct: 7 KKNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS 66
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
PV SL++G+D+VP+ + ++ + DIT +CR++++ M+ D VLHDG+P
Sbjct: 67 NLCPVNSLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKA---DTVLHDGAP 123
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +WAQ+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLFEKVE
Sbjct: 124 NVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEA 183
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE-PRKV-VDVLRGTKQKRH 239
KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ + P+ + V K+ R
Sbjct: 184 TKPPASRNVSAEIFVVCKNFKAPKKLDPRLLDPKEVFEELPDGPQNMEAKVFNPEKKVRK 243
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFG--DPACSAIKDHELTTEEVKA 297
R GYE+GD L + DF+ S +P+ +LG D +K + TT+E A
Sbjct: 244 RGGYEEGDYLLYHETGLMDFMKSEDPITMLGEYNKFIVDEEDHDWKIVKKLKQTTKEFLA 303
Query: 298 LCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEME 357
+DL+VLG++DFK +LKWR ++ E+ P P E + + + L E +
Sbjct: 304 CIEDLKVLGRKDFKMILKWRKAARELLGLDEEEEKPEIEETPLTEEEQIEKELNTLQEKQ 363
Query: 358 ELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSS--------- 408
L ++RKK E K K+ + + + I + + +F+L +
Sbjct: 364 RLSVKREKRKKNEMK--QKEIVRMQLNMINPVDIGIEAAELGRESIFNLKTAEKTGILDK 421
Query: 409 -IKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLD 467
KGK+ + D N A D+ D ++ +D +E + DE LE LD
Sbjct: 422 LAKGKRRMIF------DQNELAIDN-------DIHIDENAPLDDRDELAEADE-LESQLD 467
Query: 468 QAYENYVAKRGGSTMQRKRAKKAYAQ---------EDQLSEGDEDEDTMHTSYDSDKDQG 518
Y NY +R + RAK+A ED+ S+ + +E+T D D
Sbjct: 468 AMYSNY-KERKSERDAKFRAKQARESSEADNWNGFEDKQSDEENEEETKDYVDDDDNSDL 526
Query: 519 DLDA-----NPLMVPLDDGIRPTQEEITNK---WFSQEIFAEAVQNGDLGKLGSEDETQV 570
N L+ L R ++++K FS +F E V+ GK D V
Sbjct: 527 SDSDDDEAINQLIAKLKS--RENSSKLSSKARALFSDSLF-EGVEPDLPGKADLADSESV 583
Query: 571 DKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDE 630
+ + K++ N + + + S+ + DFEIV A D DS D SE+E
Sbjct: 584 G------DVKQLTKKRKLNPLPAEQISEAESSDEDSDFEIV-ANNEDGDVDSEYD-SEEE 635
Query: 631 EVDTK------------AEILACAKKM-LRKKQREQILDDAYNRYMFDD-DGLPDWFLEE 676
TK E + A ++ L K + ++++ +NRY F D + LP+WF+EE
Sbjct: 636 AKRTKQEKHSKDIDIATVEAMTLAHQLALGHKTKHDLIEEGFNRYSFRDMENLPEWFVEE 695
Query: 677 ERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVIS 736
E++H + +P+TKE A+K + K ++ARP KKVAEAKARKK A+ +LEK++KKA +I+
Sbjct: 696 EKQHSKINKPITKEAAMAIKDKLKALNARPIKKVAEAKARKKHRAVARLEKLKKKAGLIN 755
Query: 737 DQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVA---KKGVQVR--AGKGKV-LVDPR 787
D +D S++ K ++I +L + K +PK VVA +G+ R KGK +VD
Sbjct: 756 DDSDKSEKDKAEEIAKLMRKVTKKAKQKPKVTVVVASGKNRGLSGRPKGVKGKYKMVDGV 815
Query: 788 MKKDSR 793
+K + R
Sbjct: 816 LKNEQR 821
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 265/824 (32%), Positives = 429/824 (52%), Gaps = 112/824 (13%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + K+ RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA + PV SL++G+D+VP+ P+ ++ + DIT +CR++++ M+ D VL
Sbjct: 61 CQVASKLCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVD--VLRGT 234
EKVE KP ASR+ SAEI+++ +KAP ++DPRLLD K +F+ + ++ ++ +
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEELPDGQQNMESKIYNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTT 292
K+ R R GYE+GD L + DF+ + +P+ +LG + T D +K + TT
Sbjct: 238 KKVRKRQGYEEGDNLLYHETSILDFVRTEDPISMLGEMNKFTIDENDHEWKILKKLKQTT 297
Query: 293 EEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASAS-APTEGENEEDADNR 351
+E ++ +DL+VLGK+DFK +L+WR ++ K P E + + D +
Sbjct: 298 DEFRSCIEDLKVLGKKDFKMILRWRKIAREILGIEVKDDAKTEIEVVPLTEEEQIEKDLQ 357
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSS--- 408
L E + L ++R+K E K K+ + + T I + LF+L +
Sbjct: 358 GLQEKQRLNVKRERRRKNEMK--QKELQRMQMNMITPTDIGIEAASLGKESLFNLKTAEK 415
Query: 409 -------IKGKKDLAAVE---------YDDDDV------------------NAAAEDSED 434
KGKK + + Y D+++ NA D +
Sbjct: 416 TGILNDLAKGKKRMIFTDDELAKDNDIYIDENIMIKDKDSAADADDLESELNAMYSDYKT 475
Query: 435 ERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQ- 493
R RD + D E E + GS +++ K Y +
Sbjct: 476 RRSERDAKFRAKQARGGDNE----------------EEWTGFNEGSLEKKEEEGKDYIED 519
Query: 494 -EDQLSEGDEDEDTMHTSYDS--DKDQGD--LDANPLMV---PLDDGIRPTQEEITNKWF 545
+D+ EGD D+D T+ S +GD L + M+ P+ + + P
Sbjct: 520 NDDEGVEGDSDDDEAITNLISKLKGQEGDHKLSSKARMIFNDPIFNNVEP---------- 569
Query: 546 SQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVE 605
++ V +G + D ++++K+ KH E+ QK + +S+ +
Sbjct: 570 --DLPVNTVNDGIMSSESVGDISKLNKK-RKH---EEMHQKQDEADSSDESSSDDSD--- 620
Query: 606 GDFEIVPAPGADSSDDSSSDESEDEEVDTK------------AEILACAKKM-LRKKQRE 652
FEIV A DS D SE+E+ TK E + A ++ L +K +
Sbjct: 621 --FEIVANDNASEEFDSDYD-SEEEKNQTKKEKHSRDIDIATVEAMTLAHQLALGQKNKH 677
Query: 653 QILDDAYNRYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVA 711
++D+ +NRY F D + LPDWFLE+E+ H + +P+TKE A+K + K ++ARP KKVA
Sbjct: 678 DLVDEGFNRYTFRDTENLPDWFLEDEKEHSKINKPITKEAAMAIKEKIKAMNARPIKKVA 737
Query: 712 EAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYK 755
EAKARK+ A+ +LEK++KKA +I+D +D +++ K ++I +L +
Sbjct: 738 EAKARKRMRAVARLEKIKKKAGLINDDSDKTEKDKAEEISRLMR 781
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Specifically methylates the guanosine in position 2922 of the 25S rRNA at the stage of 27S pre-rRNA maturation. Methylates also the uridine in position 2921 in the absence of methylation of this residue guided by snoRNA snR52 at the stage of 35S pre-rRNA maturation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 272/811 (33%), Positives = 434/811 (53%), Gaps = 90/811 (11%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + KH RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKQQKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA Q P+ SL++G+D+VPI P+ ++ + DIT +CR+R++ M+ D VL
Sbjct: 61 CQVASQLCPINSLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+++++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ---GSVEPR-----KVV 228
EKVE KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ G E + K+
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELGGGNESKQNNEAKIF 237
Query: 229 DVLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSA---- 284
+ + + Q R R GY++GD TL DFI ++P+ LGS+ P
Sbjct: 238 NPEKFSSQ-RQRQGYQEGDYTLFHTMPIMDFIKQDDPINQLGSLNKFDLPAPKDDDNDDD 296
Query: 285 --------IKDHELTTEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASA 336
+ +L T E+ DL+VLG+++FK +LK+R Q + +
Sbjct: 297 DHDHEWKILSKLKLCTPELLECIKDLKVLGRKEFKMILKFRKQARDILGIDKDEKEEEEE 356
Query: 337 SAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKK----LLAKKRAKDKARKATGMQID 392
+ E E + + ++ E+++L Q+ KR KK L K+ +++ T M I
Sbjct: 357 NPKIEVEPLTE-EQKIDQELQDLINKQKQKAKRLKKNANELKQKEIIRNQMNMLTDMNIG 415
Query: 393 VMQDDYTDHELFSLSS----------IKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQ 442
+ LF+L + KGKK + ++D+++ ++D + D +
Sbjct: 416 IEAAQIGADSLFNLKTAEKTGQLDKLAKGKKKMI---FNDEEL------AKDNEIHIDEE 466
Query: 443 EHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQ-EDQLSEG- 500
E +D DS +E ++LE LD Y Y A++ RAK+A +D+ G
Sbjct: 467 EINDNDKDSADEL----DELENQLDDMYHQYQARKAERDANY-RAKQARGDADDEAWNGI 521
Query: 501 DEDEDTMHTSYDSDKDQGDLDANPLMVPL-----DDGIRPTQEEITNKWFSQEIFAEAVQ 555
+ED D + + D + + D + + L +G N + S IF E
Sbjct: 522 EEDNDDVESGKDYEMESESDDDDDEHIRLIAEKKSNG--SLSRTARNFFASDSIFNELSD 579
Query: 556 NGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPG 615
+ L ++ ++ + K E SI E+ ++ E E DFEIVP
Sbjct: 580 DVILEEIENKTKGSNGKMVE--SIQEQVANDNN------ENDDGDNDEEESDFEIVPNQK 631
Query: 616 ADSSDDSSSDESEDEEVDTKAEI--------LACAKKM-------LRKKQREQILDDAYN 660
+D DD S S+D+EV T + LA + M L +K + ++D+ N
Sbjct: 632 SDDDDDDESMNSDDDEVSTTTKSTTHQQKVDLATVEAMTLAHQVALGQKNKYDLIDEGIN 691
Query: 661 RYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKR 719
RY F D D LPDWF+++E++H + I+P+TKE A+K + K+++ARP KKV EA++RKK
Sbjct: 692 RYSFRDKDNLPDWFIDDEKKHSKLIKPITKEAAIAIKEKQKQLNARPIKKVLEAQSRKKL 751
Query: 720 VAMRKLEKVRKKANVISDQADISDRSKRKQI 750
A+++LEK++KK+++I++ + S+R K +I
Sbjct: 752 RALKRLEKIKKKSDLINEDSGKSERDKADEI 782
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPB1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 344 bits (883), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 259/799 (32%), Positives = 426/799 (53%), Gaps = 80/799 (10%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + K+ RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA Q P+ SL++G+D+VPI + ++ + DIT +CR++++ M+ D VL
Sbjct: 61 CQVASQLCPINSLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+++++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGT 234
EKVE KP ASR+ SAEI+++ YK+P K+DPRLLD + +F+ + +
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGYKSPKKMDPRLLDPREVFEELPTGPDNNEAKIFNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSIT---FGDPACSAIKDHELT 291
K+ R R GYE+GD TL +FI + +P+ LG++ ++ D +K +L
Sbjct: 238 KKVRRRQGYEEGDYTLFHEMPLLEFIKNEDPINTLGTLNKLSEPPQDDHEWKILKKSKLC 297
Query: 292 TEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFS-SAEKATVPASASAPTEGENEEDADN 350
T E+ DL+VLG++DFKHLLK+R Q + A++ T TE D
Sbjct: 298 TPELLECIKDLKVLGRKDFKHLLKFRKQARDLLGLDAKEETQEIEVEPLTE-------DQ 350
Query: 351 RVLNEMEEL----KYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSL 406
++ E++EL K + KK+ ++ K+ + + T M I + LF+L
Sbjct: 351 QIEKELQELTEKQKQKARKAKKQSNEIKQKEIQRSQMNMLTDMNIGIEAAQIGAESLFNL 410
Query: 407 SSI----------KGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERR 456
+ KGKK + ++D+++ + + DE + ++++ +
Sbjct: 411 KTAIKTGQLEKLSKGKKKMI---FNDEEIMKDNDINFDEEADANSEDEI----------- 456
Query: 457 KYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKD 516
++LE LD Y +Y +R RAKK D EG E ++ D + +
Sbjct: 457 ---DELEAQLDDMYNSYQNRRAERDANY-RAKKLRGDVD--DEGWEGIESDKEGSDKETE 510
Query: 517 QGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSED--ETQVDKQA 574
D + DD + K S+ N G+LG E E K+A
Sbjct: 511 ANDYEMESESDSDDDEHIQRIADQRKKELSKNAKVFFASNSIFGELGDEALLEEMNKKEA 570
Query: 575 EKHSIPEKAKQKMANDAAG--------PKSTHNQVSEVEGDFEIVP-APGADSSDDSSSD 625
+ + + + AND + + N VS+ + DFEIVP AP + SD S +
Sbjct: 571 KTNQVTNENAVGHANDISNKPEQMEVDSSDSENDVSD-DSDFEIVPNAPDEELSDSDSDN 629
Query: 626 ESEDEEVDTKA------------EILACAKKM-LRKKQREQILDDAYNRYMF-DDDGLPD 671
E++ +KA E + A ++ L K + ++++ ++Y F D D LP+
Sbjct: 630 ENDVSRKYSKAKDQQSKVDIATVEAMTLAHQVALGHKNKHDLVNEGIHKYSFRDHDDLPE 689
Query: 672 WFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKK 731
WF+++E+R+ + ++P+TKE A+K + K+++ARP KKV EA+ RKK A+++LEK++KK
Sbjct: 690 WFVDDEKRNSKIVKPITKEAALAIKEKQKQLNARPIKKVLEAQGRKKLRALKRLEKLKKK 749
Query: 732 ANVISDQADISDRSKRKQI 750
+++I++ + S+R K +I
Sbjct: 750 SDMINEDSAKSERDKADEI 768
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spb1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 206/513 (40%), Positives = 303/513 (59%), Gaps = 47/513 (9%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+RA++KL+QL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
S+++G+DL PI PI ++ + DIT +CRA +++ ++ D VLHDG+PNVG
Sbjct: 68 TQSIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A SQ LV+ S+KLAT+FL GTFVTKVFRS+DY+ +L+ KQLF VE KP
Sbjct: 125 AWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE--PRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+ LD K++F + P V K+KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKFLDPKHVFAELTDSTPNNEARVFNPEKKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K T+FI + +P+ ILG+ ++F GD A + + E TT+E++
Sbjct: 245 EEGDYTQFKEIPVTEFINTTDPIAILGTYNKLSFEQSPGGDLALATLNRLEETTDEIRTC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFS-----SAEKATVPASAS--APTEGENEEDADNR 351
C+DL++LGK++F+ LL+WR+++++ F KA P + AP + E + +
Sbjct: 305 CEDLKILGKKEFRSLLRWRLKVREKFGLVVKKGQAKADEPEEVAEVAPMDEELAIQEELQ 364
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQ-----DDYTDHELFSL 406
L E E K ++RK+ EKK K+ + + T M I + Q DD T FSL
Sbjct: 365 RLQEKESAKRKKERRKENEKK--RKEIIRMQMHMTTPMDIGMEQLGPGGDDAT----FSL 418
Query: 407 SSIK--GKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEE 464
++ G +D+ A + DSED++ D E SD+E ++LE
Sbjct: 419 KRVERDGARDVIA----SGKLAEIESDSEDDQTESDYDE-------SDDE----GDRLER 463
Query: 465 VLDQAYENYVAKRG--GSTMQRKRAKKAYAQED 495
LD YE Y +R S ++ K+A+K Y E+
Sbjct: 464 ELDSLYEQYQERREDRDSKVRAKKARKDYEAEE 496
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spb1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 292/502 (58%), Gaps = 35/502 (6%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+Y+LAKE GYR+RA++KL+QL+ K+ FL S LDLCAAPG W QV + +P
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
S+++G+DL PI PI ++ + DIT +CRA ++ ++ D+VLHDG+PNVG
Sbjct: 68 TNSIIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKA---DVVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q++ +Q L + S+KLAT+FL GTFVTKVFRS+DY+S+L+ QLF KVE KP
Sbjct: 125 AWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+LLD + +F+ P V +KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKLLDPRSVFEDVAGPAPNNEAKVYNPEVKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K A++FI + +P+ ILG ++F GD A +A+ TTEE++
Sbjct: 245 EEGDYTQFKEISASEFINTVDPIAILGQYNKLSFEQPKNGDVALAALDKLPETTEEIRLC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEE 358
C DL+VLG+++FK LLKWR+++++ F K T A+ D + R+ E++
Sbjct: 305 CADLKVLGRKEFKLLLKWRLKVREIFGFPSKKTQKAAVDEEVAVVENMDEELRIQEELQR 364
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQ----IDVMQDD-YTDHELFSLSSIKGKK 413
+K +KKRE++ +K+ K+ R M I V Q+ + +F L +I
Sbjct: 365 IKEKETSKKKRERRRENEKKQKEIVRMQMNMTAPMDIGVEQEGPRGEGAMFRLKTI---- 420
Query: 414 DLAAVEYDDDDVNAAAEDSEDERPN--RDTQEHVSSDIDSDEERRKYDEQ---LEEVLDQ 468
D NAA + ++T++ D SD E + DE+ LEE LD
Sbjct: 421 ----------DQNAALNKIAKGKMAVIKETEKPKDYDFGSDGETDESDEEADRLEEELDN 470
Query: 469 AYENYVAKRGGSTMQRKRAKKA 490
Y+ Y +R + + RAKKA
Sbjct: 471 LYDQY-RERKAAADAKYRAKKA 491
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | ||||||
| 255543715 | 828 | ribosomal RNA methyltransferase, putativ | 0.978 | 0.983 | 0.733 | 0.0 | |
| 225428430 | 842 | PREDICTED: adoMet-dependent rRNA methylt | 0.991 | 0.979 | 0.720 | 0.0 | |
| 449462216 | 854 | PREDICTED: adoMet-dependent rRNA methylt | 0.992 | 0.967 | 0.696 | 0.0 | |
| 356538763 | 829 | PREDICTED: adoMet-dependent rRNA methylt | 0.989 | 0.992 | 0.713 | 0.0 | |
| 356544480 | 834 | PREDICTED: adoMet-dependent rRNA methylt | 0.939 | 0.937 | 0.720 | 0.0 | |
| 224103395 | 840 | predicted protein [Populus trichocarpa] | 0.943 | 0.934 | 0.736 | 0.0 | |
| 357474413 | 868 | AdoMet-dependent rRNA methyltransferase | 0.985 | 0.944 | 0.642 | 0.0 | |
| 17381234 | 821 | AT4g25730/F14M19_10 [Arabidopsis thalian | 0.968 | 0.981 | 0.637 | 0.0 | |
| 22328933 | 821 | FtsJ-like methyltransferase family prote | 0.968 | 0.981 | 0.637 | 0.0 | |
| 297799420 | 821 | AT4g25730/F14M19_10 [Arabidopsis lyrata | 0.969 | 0.982 | 0.637 | 0.0 |
| >gi|255543715|ref|XP_002512920.1| ribosomal RNA methyltransferase, putative [Ricinus communis] gi|223547931|gb|EEF49423.1| ribosomal RNA methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1204 bits (3116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/825 (73%), Positives = 692/825 (83%), Gaps = 11/825 (1%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDK+YRLAKEHGYRSRASWKLVQLDSKF FL SS AVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKFYRLAKEHGYRSRASWKLVQLDSKFQFLHSSRAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
VQRVPVGSLVLG+DLV IAPIRGA S+EQDITKPEC+ARVKK+M EHGV+AFDLVLHDGS
Sbjct: 61 VQRVPVGSLVLGIDLVKIAPIRGATSIEQDITKPECKARVKKIMGEHGVKAFDLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PN+GGAWAQEAMSQNALVID+V+LATQFLAPKGTFVTKVFRSQDY+SV+YCL QLFEKVE
Sbjct: 121 PNIGGAWAQEAMSQNALVIDAVRLATQFLAPKGTFVTKVFRSQDYNSVIYCLNQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
VDKPAASRSASAEI++LG+KYKAPAKIDPRLLDVK+LFQGSVEP RKV+DVLRG+KQKRH
Sbjct: 181 VDKPAASRSASAEIFVLGLKYKAPAKIDPRLLDVKHLFQGSVEPQRKVIDVLRGSKQKRH 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ +RKVS A DF+WS+ PLEILGSVTSI F DPA ++DH LTTEEVKALC
Sbjct: 241 RDGYEDGESIIRKVSSAADFVWSDTPLEILGSVTSIAFEDPASLPLRDHALTTEEVKALC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEEL 359
DDLRVLGKQDFKHLLKWRM I+KA S ++KAT ++ S E +N ED D+++LNEMEEL
Sbjct: 301 DDLRVLGKQDFKHLLKWRMHIRKALSPSQKAT--STTSTDGEEKNVEDEDDKLLNEMEEL 358
Query: 360 KYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAVE 419
YA++++KK+ KK AK+RAKDKARK G+QID ++D Y DHELFSLSSIKGKKDL AV
Sbjct: 359 TYAVERKKKQAKKRDAKRRAKDKARKTKGVQIDALEDGYVDHELFSLSSIKGKKDLVAVN 418
Query: 420 YDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGG 479
++D N DSE+E P+ EH SSD+DSDEERR+YD LEE LDQ YE +V KR G
Sbjct: 419 SAENDENGELGDSENEEPHDQADEHTSSDLDSDEERRRYDAHLEEFLDQVYERFVTKREG 478
Query: 480 STMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQEE 539
ST QRKRAKKAY+ +L EGD+++D M + YDSDKDQGD + NPLMVP +DG PTQEE
Sbjct: 479 STKQRKRAKKAYS---ELMEGDDNDDAMQSDYDSDKDQGDEEVNPLMVPFNDGEVPTQEE 535
Query: 540 ITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHN 599
ITNKWF+Q++FA+AV++GDL K SED+ QVD Q K + P + A DA G K T +
Sbjct: 536 ITNKWFTQDVFAKAVEDGDLEKYDSEDQMQVDMQEGKVASP----KNKAKDAIGHKHTQH 591
Query: 600 QVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDDAY 659
Q S+ E DFEIVPAP A S D SS + DE+V+ KAEILA AKKMLRKKQRE++LDDAY
Sbjct: 592 QTSKGEEDFEIVPAP-AMDSSDDSSSDDSDEDVEAKAEILAYAKKMLRKKQREEMLDDAY 650
Query: 660 NRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKR 719
N+YMFDD+GLP WF+EEERRHRQ I+PVTKEEI AM+AQFKEI+ARPAKKVAEAKARKKR
Sbjct: 651 NKYMFDDEGLPGWFVEEERRHRQPIKPVTKEEIVAMRAQFKEINARPAKKVAEAKARKKR 710
Query: 720 VAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVVAKKGVQVRAGK 779
+AM++LEKVRKKAN ISDQA+ISDRSKRK IEQLYK A PKRPKKEYVVAKKGV +AGK
Sbjct: 711 IAMKRLEKVRKKANTISDQAEISDRSKRKMIEQLYKKAQPKRPKKEYVVAKKGVANKAGK 770
Query: 780 GKVLVDPRMKKDSRTHGSGKARKGGSKKGNIGKARKGKGSVKASS 824
GKVLVD RMKKD+R HG K KG SK G K +K KG S+
Sbjct: 771 GKVLVDRRMKKDARVHGMSKRGKGNSKGGKNAKGQKSKGPRNVSA 815
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428430|ref|XP_002280414.1| PREDICTED: adoMet-dependent rRNA methyltransferase spb1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/841 (72%), Positives = 699/841 (83%), Gaps = 16/841 (1%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDK+Y LAKEHGYRSRA+WKLVQLDSK++FLRSS AVLDLCAAPGGWMQ A
Sbjct: 1 MGKVKGKHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V+RVPVGS +LG+DL PIAP+RGA+S+E+DITKP C+ARVKK+M E+G AFD+VLHDGS
Sbjct: 61 VERVPVGSFILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PN+GGAW QEA +QNALVID+++LATQFLAPKG FVTKVFRSQDY+SVLYCLKQLFEKVE
Sbjct: 121 PNIGGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVDVLRGTKQKRHR 240
VDKPAASRS SAEI++LG+KYKAPAKIDPRLLDVK+LFQG++EPRKVVDVLRGTKQKRHR
Sbjct: 181 VDKPAASRSTSAEIFVLGLKYKAPAKIDPRLLDVKHLFQGTIEPRKVVDVLRGTKQKRHR 240
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
DGYEDGDTTLRKVS AT+FIWS+ PLEILGSVTSI+F DPA IKDH LTTEEVK LCD
Sbjct: 241 DGYEDGDTTLRKVSSATNFIWSDTPLEILGSVTSISFDDPASLPIKDHALTTEEVKTLCD 300
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELK 360
DLRVLGKQDFKHLLKWRM ++KA S +KAT S +A + E D D R+LNEMEEL
Sbjct: 301 DLRVLGKQDFKHLLKWRMHVRKALSPVQKAT---STAAEDDHEKVVDEDERMLNEMEELT 357
Query: 361 YAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV-- 418
YAM+++KKR KKLLAK++AKDKARK TGMQ+D +++ YTDHELFSLSSIK KKDL AV
Sbjct: 358 YAMERKKKRTKKLLAKRQAKDKARKVTGMQVDALEEGYTDHELFSLSSIKAKKDLLAVNS 417
Query: 419 -EYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKR 477
EYD+ D DSEDER +TQEH +SD+DSDEERR+YDEQ+EE+LDQ YE +VA+R
Sbjct: 418 TEYDEGD---GVVDSEDERTREETQEHSASDMDSDEERRRYDEQMEEMLDQVYEQFVARR 474
Query: 478 GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQ 537
GST QRKRA+K ++++D L +GD+D D+D +Q DL+ANPLMVPL PTQ
Sbjct: 475 EGSTKQRKRARKKHSEDDLLEDGDDDIIHSDHDSDND-NQADLEANPLMVPLHGEEMPTQ 533
Query: 538 EEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKST 597
EIT+KWFSQ+IFAEA + GDLGK SEDE +VD+Q + SIP+KAK+ A +
Sbjct: 534 REITDKWFSQDIFAEAAEEGDLGKHESEDEMEVDRQEKTLSIPKKAKENKARKPSEINPP 593
Query: 598 HNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDD 657
+ S+ E DFEIVPAP DSSDDSSSDES+DE++ KAEILACAKKMLRKK+RE+ILDD
Sbjct: 594 QIEASKAEEDFEIVPAPSTDSSDDSSSDESDDEDIHAKAEILACAKKMLRKKERERILDD 653
Query: 658 AYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARK 717
AYN+YMF D GLP WF +EE RH Q I+PVTKEEIAAM+AQFKEIDARPAKKVAEAKARK
Sbjct: 654 AYNKYMFHDKGLPQWFADEEARHCQTIKPVTKEEIAAMRAQFKEIDARPAKKVAEAKARK 713
Query: 718 KRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVVAKKGVQVRA 777
KR AMRKLEKVRKKAN ISDQ DISDRSK + IEQLYK A PKRP+KEYVVAKKGVQVRA
Sbjct: 714 KRAAMRKLEKVRKKANTISDQTDISDRSKGRLIEQLYKKAAPKRPQKEYVVAKKGVQVRA 773
Query: 778 GKGKVLVDPRMKKDSRT-----HGSGKARKGGSKKGNIGKARKG-KGSVKASSKKGKKGN 831
GKGKVLVD RMKKD+R+ G G ++KGG +KG +KG KGS KAS+K GK G
Sbjct: 774 GKGKVLVDRRMKKDARSRGMSKQGKGPSKKGGFRKGKNANGQKGNKGSAKASAKSGKGGR 833
Query: 832 K 832
K
Sbjct: 834 K 834
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462216|ref|XP_004148837.1| PREDICTED: adoMet-dependent rRNA methyltransferase spb1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/860 (69%), Positives = 711/860 (82%), Gaps = 34/860 (3%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDKYYRLAKEHGYRSRASWKL QLDSK++FLRSSHAVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V+RVPVGSLV+G+DLVPIAP+RGAV+ EQDITKPEC+AR+KK+M E G AFDL+LHDGS
Sbjct: 61 VERVPVGSLVVGVDLVPIAPVRGAVAFEQDITKPECKARLKKIMSEKGCAAFDLILHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAM+QN+LVIDSV+LATQ LAPKGTFVTKVFRSQDYSSVLYC+KQLFEKVE
Sbjct: 121 PNVGGAWAQEAMAQNSLVIDSVRLATQLLAPKGTFVTKVFRSQDYSSVLYCMKQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
VDKPAASRSASAEIY+LGI+YKAPAKIDPRLLDVKYLFQGS+EP +KVVDVLRGTKQKRH
Sbjct: 181 VDKPAASRSASAEIYVLGIRYKAPAKIDPRLLDVKYLFQGSIEPQQKVVDVLRGTKQKRH 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG TTLRKVS A++FIWS++PLE+LG+VT I F DP IKDH+LTTEEVKALC
Sbjct: 241 RDGYEDGATTLRKVSSASNFIWSDSPLEVLGTVTCIAFDDPDSLPIKDHDLTTEEVKALC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEEL 359
DDLRVLGKQDFKHLLKWR+ I+KA S +K T +++ E E ++D D+++LNEMEEL
Sbjct: 301 DDLRVLGKQDFKHLLKWRLHIRKALSPDQKPT--STSVKDAENEVKQDEDDKLLNEMEEL 358
Query: 360 KYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV- 418
YAM+++KKR KKLLAK++AKDKARKA G Q+DVM++ Y DHELFSLS+IKGK DL AV
Sbjct: 359 AYAMERKKKRAKKLLAKRKAKDKARKAMGTQLDVMEEGYVDHELFSLSNIKGKNDLRAVD 418
Query: 419 --EYDDDDVNAAAEDSEDER-PNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVA 475
EYDDD+V +++ + NR + +SDIDSDEERR+YDE +EE+LDQAYE++V+
Sbjct: 419 STEYDDDNVELGEHENDVTKDKNRGSS---ASDIDSDEERRRYDEHMEELLDQAYESFVS 475
Query: 476 KRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRP 535
++ GS +RKR K AY+ +L E + D + + YDSD++ D D NPLMV LDDG P
Sbjct: 476 RKEGSAKRRKRVKNAYSDNAELLEDENGGDGIQSDYDSDENIVDADKNPLMVSLDDGAEP 535
Query: 536 TQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPK 595
TQEEI +KWFSQ+IFAEA + GDL +L S+D+ +VD E ++ +KAK ++ + AG K
Sbjct: 536 TQEEIASKWFSQDIFAEAAEEGDLKRLDSDDDMEVDGPKETLAVSKKAKSNISQN-AGEK 594
Query: 596 S----THNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQR 651
S + ++V+ FE+VPAP DSSD SSS+ES+DE+ DT+AEILACAKKMLRKKQR
Sbjct: 595 SKISTNARESNKVDDGFEVVPAPATDSSDSSSSEESDDEDPDTRAEILACAKKMLRKKQR 654
Query: 652 EQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVA 711
EQILDD+YN+YMFDD GLP WFL+EE+RHRQ I+P+TKEE+AA++AQFKEIDARPAKKVA
Sbjct: 655 EQILDDSYNKYMFDDSGLPKWFLDEEQRHRQPIKPITKEEVAAIRAQFKEIDARPAKKVA 714
Query: 712 EAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVVAKK 771
EAKARKKR+AM+KLEKVRKKANVISDQADISDRSKRK I+QLYK AVP++PKKE VVAKK
Sbjct: 715 EAKARKKRIAMKKLEKVRKKANVISDQADISDRSKRKMIDQLYKKAVPQKPKKELVVAKK 774
Query: 772 GVQVRAGKGKVLVDPRMKKDSRTHG---------------SGKARKGGSKKGNI--GKA- 813
GVQVR GKGKVLVD RMKKD+R HG + +A+ G +K N GKA
Sbjct: 775 GVQVRVGKGKVLVDRRMKKDARKHGMNKQGKGSKKGKNSKAPRAKGGPAKDSNTPGGKAG 834
Query: 814 RKGK-GSVKASSKKGKKGNK 832
R GK G KAS KKG++GNK
Sbjct: 835 RAGKAGFTKASGKKGRRGNK 854
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538763|ref|XP_003537870.1| PREDICTED: adoMet-dependent rRNA methyltransferase spb1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/838 (71%), Positives = 696/838 (83%), Gaps = 15/838 (1%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGK KGKHRLDKYY LAKEHGYRSRASWKLVQL++KF FL S+ AVLDLCAAPGGWMQVA
Sbjct: 1 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNNKFHFLESARAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V+ +PV LV+G+DL PIAP+RGA+++++DIT+PEC++R+KK+M +HG RAFD++LHDGS
Sbjct: 61 VKSMPVNHLVIGVDLSPIAPVRGAIAIQEDITRPECKSRIKKLMNDHGCRAFDVILHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEA SQNALVID+VKLATQFLAPKG FVTK+FRSQDYSSV+YCLKQLFEKVE
Sbjct: 121 PNVGGAWAQEATSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPR-KVVDVLRGTKQKRH 239
VDKPAASRS SAEIY+LG+KYKAPAKIDPRLLDVK+LFQGSVEP+ KVVDVLR +KQKRH
Sbjct: 181 VDKPAASRSESAEIYVLGLKYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDSKQKRH 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDGDTTLRK+S A +FIWSN+PLEILGSVTSITF DPA S IKDH+LTTEEVK+LC
Sbjct: 241 RDGYEDGDTTLRKLSSAANFIWSNSPLEILGSVTSITFTDPADSPIKDHDLTTEEVKSLC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEG-ENEEDADNRVLNEMEE 358
DDLRVLGKQDFKHLLKWR+QI+KA S +K P S + G E + D ++R+LNEMEE
Sbjct: 301 DDLRVLGKQDFKHLLKWRIQIRKALSPTQK---PDSTTTEQMGNEPKVDEEDRILNEMEE 357
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV 418
L Y MD++KKR KKLLAK+RAKDKARKATGMQ+D + D Y D ELF+LSSIKGKKDL AV
Sbjct: 358 LTYVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAIDDGYVDQELFALSSIKGKKDLVAV 417
Query: 419 ---EYDDDDVNAAAEDSEDERPNRDTQEHVSSDI-DSDEERRKYDEQLEEVLDQAYENYV 474
EY+ D+ EDSE+E ++ EH S D+ DSDEER++Y+EQ+E+++D+AYE +V
Sbjct: 418 DNTEYEGDE--GELEDSENEE-THESPEHSSGDLEDSDEERKRYNEQMEDLMDKAYERFV 474
Query: 475 AKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIR 534
++ GS QRKR KK+Y +DQL EG ED+D + + YDSD+DQGD +ANPLMVPL+DG
Sbjct: 475 IRKEGSAKQRKRIKKSYDAKDQLLEGGEDDDIVQSKYDSDEDQGDQEANPLMVPLNDGAE 534
Query: 535 PTQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGP 594
TQEE+ NKWFSQ++FAEA + GD K S+DE +D+ EK SI +K K+ A
Sbjct: 535 LTQEEVMNKWFSQDVFAEAAEEGDFEKDESKDEMDIDEPKEKISIAKKVKENKTAAPAVV 594
Query: 595 KSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQI 654
Q S+ DFEIVPAP S D SS + +E+ + KAEILA AKKM+RKKQREQ+
Sbjct: 595 AHPQPQPSKAADDFEIVPAPDT-DSSDDSSSDEWEEDTEAKAEILAYAKKMMRKKQREQM 653
Query: 655 LDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAK 714
LDDAYN+YMFDD+GLP WFL+EERRHRQ I+P+TKEEIAAMKAQFKEIDARPAKKVAEAK
Sbjct: 654 LDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPITKEEIAAMKAQFKEIDARPAKKVAEAK 713
Query: 715 ARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVVAKKGVQ 774
ARKKRVAMRKLEKVRKKAN ISDQ +ISD SKRKQIEQLYK AVPKRPKKEYVVAKKGVQ
Sbjct: 714 ARKKRVAMRKLEKVRKKANAISDQTEISDSSKRKQIEQLYKRAVPKRPKKEYVVAKKGVQ 773
Query: 775 VRAGKGKVLVDPRMKKDSRTHGSGKARKGGSKKGNIGKARKGKGSVKASSKKGKKGNK 832
VRAGKGKVLVD RMKKD+R HG GKA KGGSK KA KGKGS KAS+KKGK+ K
Sbjct: 774 VRAGKGKVLVDRRMKKDARKHGMGKAGKGGSKTKG--KAPKGKGSSKASAKKGKQRTK 829
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544480|ref|XP_003540678.1| PREDICTED: adoMet-dependent rRNA methyltransferase spb1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/805 (72%), Positives = 672/805 (83%), Gaps = 23/805 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGK KGKHRLDKYY LAKEHGYRSRASWKLVQL+SKF FL S+ AVLDLCAAPGGWMQV
Sbjct: 1 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFGFLESARAVLDLCAAPGGWMQVV 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
VQRVPV LV+G+DL PIAP+RGA+++++DIT+PEC++R+KK+M +HG RAFD++LHDGS
Sbjct: 61 VQRVPVDHLVIGVDLAPIAPVRGAIAIQEDITRPECKSRIKKLMNDHGCRAFDVILHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAMSQNALVID+VKLATQFLAPKG FVTK+FRSQDYSSV+YCLKQLFEKVE
Sbjct: 121 PNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGKFVTKIFRSQDYSSVVYCLKQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPR-KVVDVLRGTKQKRH 239
VDKPAASRS SAEIY+LG+ YKAPAKIDPRLLDVK+LFQGSVEP+ KVVDVLR TKQKRH
Sbjct: 181 VDKPAASRSESAEIYVLGLGYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRH 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG+TTLRKVS A +FIWSN+PLEILGSVTSITF DPA S IKDH+LT+EEVK+LC
Sbjct: 241 RDGYEDGNTTLRKVSSAANFIWSNSPLEILGSVTSITFTDPADSLIKDHDLTSEEVKSLC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEE----DADNRVLNE 355
DDLRVLGKQDFKHLLKWR+Q++KA S +K S TE + E D ++R+LNE
Sbjct: 301 DDLRVLGKQDFKHLLKWRIQVRKALSPTQKPD-----STTTELMDNEPKVVDEEDRILNE 355
Query: 356 MEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDL 415
MEEL Y MD++KKR KKLLAK+RAKDKARKATGMQ+D + D Y D ELF+LSSIKGKKDL
Sbjct: 356 MEELTYVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAIDDGYVDQELFALSSIKGKKDL 415
Query: 416 AAV---EYDDDDVNAAAEDSEDERPNRDTQEHVSSDI-DSDEERRKYDEQLEEVLDQAYE 471
AV EY+ D+ EDSE+E + EH SSD+ DSDEER++Y+EQ+E+++DQAYE
Sbjct: 416 VAVDNTEYEGDE--GEVEDSENEETHEGRPEHSSSDLEDSDEERKRYNEQMEDLMDQAYE 473
Query: 472 NYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDD 531
+V ++ GS QRKR KK+Y + QL EG ED+D + + YDSD+DQGD +ANPLMVPL+D
Sbjct: 474 RFVIRKEGSAKQRKRIKKSYDAKAQLLEGGEDDDIVQSKYDSDEDQGDQEANPLMVPLND 533
Query: 532 GIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDA 591
TQEEI NKWFSQ++FAEA + GD K S+DE +D+ EK SI +K K+ N
Sbjct: 534 EAELTQEEIMNKWFSQDVFAEAAEEGDFKKDESKDEMDIDEPKEKISIAKKVKE---NKT 590
Query: 592 AGPK-STH--NQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRK 648
A P +TH Q S+ DFEIVPAP S D SS + +E+++ KAEILA AKKM+RK
Sbjct: 591 AAPAVATHPQPQPSKAGDDFEIVPAPDT-DSSDDSSSDEWEEDIEAKAEILAYAKKMMRK 649
Query: 649 KQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAK 708
KQRE +LDDAYN+YMFDD+GLP WFL+EERRHRQ I+P+TKEEIAAMKAQFKEIDARPAK
Sbjct: 650 KQREHLLDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPITKEEIAAMKAQFKEIDARPAK 709
Query: 709 KVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVV 768
KVAEAKARKKRVAMRKLEKVRKKAN ISDQ +ISDRSKRKQIEQLYK AVPKRPKKEYVV
Sbjct: 710 KVAEAKARKKRVAMRKLEKVRKKANAISDQTEISDRSKRKQIEQLYKRAVPKRPKKEYVV 769
Query: 769 AKKGVQVRAGKGKVLVDPRMKKDSR 793
AKKGVQVRAGKGKVLVD RMKKD+R
Sbjct: 770 AKKGVQVRAGKGKVLVDRRMKKDAR 794
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103395|ref|XP_002313039.1| predicted protein [Populus trichocarpa] gi|222849447|gb|EEE86994.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/804 (73%), Positives = 679/804 (84%), Gaps = 19/804 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDK+Y+LAKEHGYRSRASWKL+QLD+KF FL+SS AVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKFYKLAKEHGYRSRASWKLIQLDTKFKFLQSSRAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
VQRVPV SLVLG+DLV IAP+RGAVS+EQDITKPECRA++KK+M EHGVRAFDLVLHDGS
Sbjct: 61 VQRVPVRSLVLGIDLVKIAPLRGAVSIEQDITKPECRAKIKKIMGEHGVRAFDLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PN+GGAW+QEAM+QN+LVIDSV+LATQFLAPKGTFVTKVFRSQDYSSV+YCL QLFEKVE
Sbjct: 121 PNIGGAWSQEAMAQNSLVIDSVRLATQFLAPKGTFVTKVFRSQDYSSVIYCLNQLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
VDKPAASRSASAEI++LG++YKAPAKIDPRLLD+K+LFQGS EP RKVVDVLRGTKQKRH
Sbjct: 181 VDKPAASRSASAEIFVLGLRYKAPAKIDPRLLDIKHLFQGSDEPQRKVVDVLRGTKQKRH 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ +RKVS A DFIWS++PLEILGSVTSI F D ++DH+LTTEEVK LC
Sbjct: 241 RDGYEDGESIVRKVSSAADFIWSDSPLEILGSVTSIAFDDEVSLPLRDHDLTTEEVKHLC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEEL 359
DDLRVLGKQDFKHLLKWRMQI+KA SS++KA+ S E E EED D+R+LNEME+L
Sbjct: 301 DDLRVLGKQDFKHLLKWRMQIRKALSSSQKAS--PSIGKGGEDEKEEDEDDRLLNEMEDL 358
Query: 360 KYAMDQRKKREKKLLAKKRAKDKARKAT-GMQIDVMQDDYTDHELFSLSSIKGKKDLAAV 418
AM+++KKREKKLLAK+RAKDK RKAT GMQID D YTD ELFSLSSIKGKKDL AV
Sbjct: 359 TNAMERKKKREKKLLAKRRAKDKVRKATGGMQIDATADGYTDLELFSLSSIKGKKDLVAV 418
Query: 419 EYDD-DDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKR 477
+ D D N D E+E + + QEH SD+DSDEERR++DEQ+EE+LDQAYE +V KR
Sbjct: 419 DAADYDHENGGLRDGENEETDEENQEHSPSDVDSDEERRRFDEQMEEILDQAYERFVTKR 478
Query: 478 GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQ 537
GST QRKRAK+AYA+ QL EGD D D +H+ YDSDK+ GD +ANPLMVP +DG PT+
Sbjct: 479 EGSTKQRKRAKQAYAE--QLLEGDGDNDIVHSDYDSDKETGDHEANPLMVPFNDGEVPTE 536
Query: 538 EEITNKWFSQEIFAEAVQNGD--------LGKLGSEDETQVDKQAEKHSIPEKAKQKMAN 589
EEIT KWF Q+IFA+A ++GD L K SEDE VD Q ++ + P+K+ A
Sbjct: 537 EEITRKWFDQDIFAKAAEDGDLETAEARNLEKYESEDEMLVDGQEKEIATPKKS----AK 592
Query: 590 DAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKK 649
+AAG T S E DFEIVPAP DSSDDSSSDESED++VD+KAEILACAKKMLRKK
Sbjct: 593 NAAGSDRTQPPSSTAENDFEIVPAPATDSSDDSSSDESEDDDVDSKAEILACAKKMLRKK 652
Query: 650 QREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKK 709
+REQ+LDD+YN+YMFDD+GLP WF+EEE+RH Q I+PVTKEEIAAM+AQFKEI+ARPAKK
Sbjct: 653 RREQMLDDSYNKYMFDDEGLPGWFVEEEKRHCQPIKPVTKEEIAAMRAQFKEINARPAKK 712
Query: 710 VAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVVA 769
VAEAKARKKRVA RKLEKVRKKAN IS Q +ISD SK + IEQLYK A PKRPKKEYVVA
Sbjct: 713 VAEAKARKKRVAARKLEKVRKKANDISKQTEISDHSKGRLIEQLYKKAAPKRPKKEYVVA 772
Query: 770 KKGVQVRAGKGKVLVDPRMKKDSR 793
KKGV V+ GKGKVLVD RMKKD+R
Sbjct: 773 KKGVTVKVGKGKVLVDRRMKKDAR 796
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474413|ref|XP_003607491.1| AdoMet-dependent rRNA methyltransferase spb1 [Medicago truncatula] gi|355508546|gb|AES89688.1| AdoMet-dependent rRNA methyltransferase spb1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/873 (64%), Positives = 671/873 (76%), Gaps = 53/873 (6%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
K KGKHRLDKYY LAKEHGY SRASWKLVQ++SKF FL SS +VLDLCAAPGGWMQVAV
Sbjct: 4 AKAKGKHRLDKYYYLAKEHGYCSRASWKLVQINSKFHFLESSRSVLDLCAAPGGWMQVAV 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
QRVPV LV+G+DL PI PIRGA+++++DIT+PEC++RV+K+M E+G RAFD++LHDGSP
Sbjct: 64 QRVPVDHLVIGVDLTPIKPIRGAIAIQEDITRPECKSRVRKIMNENGYRAFDVILHDGSP 123
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVGGAWAQEA SQN+LVID++KLATQFLAPKGTFVTKVFRSQDY+SV++C+K+LFEKVEV
Sbjct: 124 NVGGAWAQEATSQNSLVIDAIKLATQFLAPKGTFVTKVFRSQDYNSVVWCMKKLFEKVEV 183
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRHR 240
+KP ASRS SAEIY+LGIKY APAKIDPR+LD+K+LF+ S +P K+VDVL KQKRHR
Sbjct: 184 EKPPASRSESAEIYILGIKYLAPAKIDPRILDIKHLFEASAQPIAKMVDVLGNNKQKRHR 243
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
DGYEDG+TTLRKVS A +F+W++ PLEILGSVTSI+F DPA IKDH+LTTEEVK+LC+
Sbjct: 244 DGYEDGNTTLRKVSSAANFVWTDAPLEILGSVTSISFTDPADIPIKDHDLTTEEVKSLCE 303
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDA---DNRVLNEME 357
DLRVLGKQDFKHLLKWR+ I+KA S A+K T PA+ + E ENE D D+R+LNEME
Sbjct: 304 DLRVLGKQDFKHLLKWRINIRKALSPAKK-TEPATTA---EVENEHDVVDEDDRLLNEME 359
Query: 358 ELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAA 417
EL AMD++KKREKK+L+K+RAKDKARKATGMQ+D ++ DY DHELFSL+S+KGKKDL A
Sbjct: 360 ELTNAMDRKKKREKKILSKRRAKDKARKATGMQVDAVE-DYVDHELFSLASMKGKKDLVA 418
Query: 418 VEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKR 477
V+ D + D + N+ EH SSD+DSDEERR+YDEQ+E++L+QAYE +V K+
Sbjct: 419 VDTTDYEGGEGEVDDSENDENKGGSEHSSSDLDSDEERRRYDEQMEDLLEQAYERFVIKK 478
Query: 478 GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQ 537
G+ QRKR KK+Y + QL E ED+D + + YDSD DQ +ANPLMVPL DG PTQ
Sbjct: 479 EGTAQQRKRIKKSYDADSQLLEAGEDDDIVPSKYDSDDDQDVQEANPLMVPLTDGTGPTQ 538
Query: 538 EEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVD--------------------KQAEKH 577
EEITN WFSQ++FAEAV+ G K SE+E +D K E
Sbjct: 539 EEITNMWFSQDVFAEAVEEGGFEKDDSENEMDIDGLKEKPFVAEKIKENKPVAEKIKENK 598
Query: 578 SIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAE 637
S+ EK K+ + T +QVS E DFEIVPAP + D SS + +++V KAE
Sbjct: 599 SVAEKIKENKMTTSVEADRTQSQVSN-EMDFEIVPAPA--TDSDDSSSDESEDDVGKKAE 655
Query: 638 ILACAKKMLRKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKA 697
ILA AKKMLRKKQREQ+LDDAYN+YMFDD GLP WFL+EER+HR ++PVTKEE+AAMKA
Sbjct: 656 ILAYAKKMLRKKQREQMLDDAYNKYMFDDQGLPKWFLDEERKHRVPVKPVTKEEVAAMKA 715
Query: 698 QFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSA 757
QFK ID RPAKKVAEAKARKKRVAMRK+EKVRKKAN ISDQ DISDRSK KQI++LYK+A
Sbjct: 716 QFKAIDTRPAKKVAEAKARKKRVAMRKIEKVRKKANAISDQPDISDRSKSKQIDRLYKNA 775
Query: 758 VPKRPKKEYVVAKKGVQVRAGKGKVLVDPRMKKDSRTHGSGKARKGGSK----------- 806
VPKRP+KEYV AKKGVQV+AGKGKVLVD RMK D+R G GK K GSK
Sbjct: 776 VPKRPQKEYVTAKKGVQVKAGKGKVLVDRRMKSDARKSGMGKGGKRGSKAKGGKAPKGGK 835
Query: 807 ----------KGNIGKARKGKGSVKASSKKGKK 829
K +G + KGS S KKG+K
Sbjct: 836 APKGGRAPSGKAPMGGGKAPKGSRAPSGKKGRK 868
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17381234|gb|AAL36036.1| AT4g25730/F14M19_10 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/825 (63%), Positives = 657/825 (79%), Gaps = 19/825 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDKYYRLAKE G+RSRAS+KL+QLD+K+S L S+HAVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V++VPVGSLVLG+DLVPI P+RG V++ QDIT+ EC++++K+VME+HGV AF+LVLHDGS
Sbjct: 61 VEKVPVGSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAMSQNALVIDSV+LAT+FLA G VTKVFRS+DY+SVLYCL +LFEKVE
Sbjct: 121 PNVGGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
V KP ASRSASAE YL+G+KY APAKIDPRLLD ++LF+ S EP RKVVDVL G+KQKR+
Sbjct: 181 VFKPPASRSASAETYLVGLKYLAPAKIDPRLLDYRHLFKESAEPTRKVVDVLGGSKQKRN 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ LR+V+ A DFIWS NPL++LG+ TSI+F D A +K+H+LTTEE+K LC
Sbjct: 241 RDGYEDGESILRRVASAADFIWSENPLDVLGTTTSISFDDQASLPLKEHDLTTEEIKILC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEG-ENEEDADNRVLNEMEE 358
DDL VLGK DFKH+LKWRMQI+KA + +K + P G E+EE+ D+++LNE+EE
Sbjct: 301 DDLPVLGKNDFKHILKWRMQIRKALTPEKKEV---AKPEPDVGKEDEENEDDKLLNELEE 357
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV 418
L +D++KK+ KK+LAK+RAKDKARKATG Q+DV++D + D+ELFSL++IKGKKDL AV
Sbjct: 358 LTNTVDRKKKQAKKILAKRRAKDKARKATGPQMDVLEDGFVDNELFSLNAIKGKKDLMAV 417
Query: 419 EYDDDDVNAAAEDSEDERPNRDT-QEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKR 477
+ D+DD N A DSE+E + SD DSDEER+KY EQ+EE+ +QAYE Y+ K+
Sbjct: 418 DNDEDD-NGNAVDSENEDHGEGASDDSKDSDRDSDEERQKYTEQMEEIFEQAYERYMVKK 476
Query: 478 GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQ 537
GS QRKRA++A+A+ +L EGD DE+ M YDSD ++ +ANPL+VPLDDG+ T+
Sbjct: 477 EGSAKQRKRARQAHAE--KLEEGDGDEE-MKIDYDSDMNEEKDEANPLVVPLDDGVVQTK 533
Query: 538 EEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKST 597
EEI+N+WFSQ IFAEAV+ GDLGK SEDE K+++ S P+K+KQK + + +
Sbjct: 534 EEISNQWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASKASVLSDQS 593
Query: 598 HNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDD 657
S+ E +FE+VPAP DS DSSS++ V TKAEILACAKKMLRKKQREQ+LDD
Sbjct: 594 LPNSSKKEDEFEVVPAPATDSDSDSSSEDD----VHTKAEILACAKKMLRKKQREQMLDD 649
Query: 658 AYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARK 717
AYN++MF D+GLP WF+++E++HRQ ++PVTK+E+ AMKAQFKEI+ARPAKKVAEAKARK
Sbjct: 650 AYNKHMFVDEGLPKWFVDDEKQHRQPMKPVTKDEVNAMKAQFKEINARPAKKVAEAKARK 709
Query: 718 KRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAV-PKRPKKEYVVAKKGVQVR 776
KR A ++LEKVRKKAN ISD ADISDRSK K I++LYK A P++P+KE VV+KKGV V+
Sbjct: 710 KRAAQKRLEKVRKKANTISDTADISDRSKDKMIDKLYKKAAEPRKPRKELVVSKKGVGVK 769
Query: 777 AGKGKVLVDPRMKKDSRTHGSGK----ARKGGSKKGNIGKARKGK 817
GKG+ VD RMK D R G GK +KG K G GK GK
Sbjct: 770 VGKGQKRVDRRMKSDDRKRGRGKPGRNGQKGTGKAGQKGKRPAGK 814
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328933|ref|NP_194303.2| FtsJ-like methyltransferase family protein [Arabidopsis thaliana] gi|332659706|gb|AEE85106.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/825 (63%), Positives = 657/825 (79%), Gaps = 19/825 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDKYYRLAKE G+RSRAS+KL+QLD+K+S L S+HAVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V++VPVGSLVLG+DLVPI P+RG V++ QDIT+ EC++++K+VME+HGV AF+LVLHDGS
Sbjct: 61 VEKVPVGSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAMSQNALVIDSV+LAT+FLA G VTKVFRS+DY+SVLYCL +LFEKVE
Sbjct: 121 PNVGGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
V KP ASRSASAE YL+G+KY APAKIDPRLLD ++LF+ S EP RKVVDVL G+KQKR+
Sbjct: 181 VFKPPASRSASAETYLVGLKYLAPAKIDPRLLDYRHLFKESAEPTRKVVDVLGGSKQKRN 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ LR+V+ A DFIWS NPL++LG+ TSI+F D A +K+H+LTTEE+K LC
Sbjct: 241 RDGYEDGESILRRVASAADFIWSENPLDVLGTTTSISFDDQASLPLKEHDLTTEEIKILC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEG-ENEEDADNRVLNEMEE 358
DDL VLGK DFKH+LKWRMQI+KA + +K + P G E+EE+ D+++LNE+EE
Sbjct: 301 DDLPVLGKNDFKHILKWRMQIRKALTPEKKEV---AKPEPDVGKEDEENEDDKLLNELEE 357
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV 418
L +D++KK+ KK+LAK+RAKDKARKATG Q+DV++D + D+ELFSL++IKGKKDL AV
Sbjct: 358 LTNTVDRKKKQAKKILAKRRAKDKARKATGPQMDVLEDGFVDNELFSLNAIKGKKDLMAV 417
Query: 419 EYDDDDVNAAAEDSEDERPNRDT-QEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKR 477
+ D+DD N A DSE+E + SD DSDEER+KY EQ+EE+ +QAYE Y+ K+
Sbjct: 418 DNDEDD-NGNAVDSENEDHGEGASDDSKDSDRDSDEERQKYTEQMEEIFEQAYERYMVKK 476
Query: 478 GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQ 537
GS QRKRA++A+A+ +L EGD DE+ M YDSD ++ +ANPL+VPLDDG+ T+
Sbjct: 477 EGSAKQRKRARQAHAE--KLEEGDGDEE-MKIDYDSDMNEEKDEANPLVVPLDDGVVQTK 533
Query: 538 EEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKST 597
EEI+N+WFSQ IFAEAV+ GDLGK SEDE K+++ S P+K+KQK + + +
Sbjct: 534 EEISNQWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASKASVLSDQS 593
Query: 598 HNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDD 657
S+ E +FE+VPAP DS DSSS++ V TKAEILACAKKMLRKKQREQ+LDD
Sbjct: 594 LPNSSKKEDEFEVVPAPATDSDSDSSSEDD----VHTKAEILACAKKMLRKKQREQMLDD 649
Query: 658 AYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARK 717
AYN++MF D+GLP WF+++E++HRQ ++PVTK+E+ AMKAQFKEI+ARPAKKVAEAKARK
Sbjct: 650 AYNKHMFVDEGLPKWFVDDEKQHRQPMKPVTKDEVNAMKAQFKEINARPAKKVAEAKARK 709
Query: 718 KRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAV-PKRPKKEYVVAKKGVQVR 776
KR A ++LEKVRKKAN ISD ADISDRSK K I++LYK A P++P+KE VV+KKGV V+
Sbjct: 710 KRAAQKRLEKVRKKANTISDTADISDRSKDKMIDKLYKKAAEPRKPRKELVVSKKGVGVK 769
Query: 777 AGKGKVLVDPRMKKDSRTHGSGK----ARKGGSKKGNIGKARKGK 817
GKG+ VD RMK D R G GK +KG K G GK GK
Sbjct: 770 VGKGQKRVDRRMKSDDRKRGGGKPGRNGQKGTGKAGQKGKRPAGK 814
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799420|ref|XP_002867594.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata] gi|297313430|gb|EFH43853.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/824 (63%), Positives = 658/824 (79%), Gaps = 17/824 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDKYYRLAKE G+RSRAS+KL+QLD+K+S L SSHAVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSSHAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V++VPVGSLVLG+DLVPI P+RG V++ QDIT+ EC++++K+VME+HGV AF+LVLHDGS
Sbjct: 61 VEKVPVGSLVLGIDLVPILPVRGCVTMTQDITRSECKSKIKQVMEQHGVSAFNLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAMSQNALVIDSV+LAT+FLA G +TKVFRS+DY++VLYCL +LFEKVE
Sbjct: 121 PNVGGAWAQEAMSQNALVIDSVRLATEFLARNGNLITKVFRSRDYNAVLYCLGRLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
V KP ASRSASAE YL+G+KY APAKIDPRLLD ++LF+ + EP RKVVDVL G+KQKR+
Sbjct: 181 VFKPPASRSASAETYLVGLKYLAPAKIDPRLLDYRHLFKEAAEPTRKVVDVLGGSKQKRN 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ LR+V+ A DFIWS NPLE+LG+VTSI+F D A +K+H+LTTEE+K LC
Sbjct: 241 RDGYEDGESILRRVASAADFIWSENPLEVLGTVTSISFDDQASLPLKEHDLTTEEIKILC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEG-ENEEDADNRVLNEMEE 358
DDL VLGK DFKH+LKWRMQI+KA + +K + P G E+EE+ D+++LNE+EE
Sbjct: 301 DDLPVLGKNDFKHILKWRMQIRKALTPEKKEV---AKPEPDVGKEDEENEDDKLLNELEE 357
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAV 418
L +D++KK+ KK+LAK+RAKDK RKAT Q+DV++D Y D+ELFSL++IKGKKDL AV
Sbjct: 358 LTNTVDRKKKQAKKILAKRRAKDKTRKATNPQMDVLEDGYVDNELFSLAAIKGKKDLMAV 417
Query: 419 EYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRG 478
+ DDDD A + ++R + + SDIDSDEER+KY EQ+EE+ D+AYE Y+ K+
Sbjct: 418 DNDDDDDGNADDSENEDRGEGASDDSKDSDIDSDEERQKYTEQMEEIFDEAYERYMVKKE 477
Query: 479 GSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQE 538
GS QRKRA++A+A+ +L EGD DE+ M YDSD ++ +ANPL+VPLDDG T+E
Sbjct: 478 GSAKQRKRARQAHAE--KLEEGDGDEE-MKIDYDSDLNEEKDEANPLVVPLDDGEVQTKE 534
Query: 539 EITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTH 598
EI+N+WFSQ IFAEAV+ GDLGK EDET ++K+++ S P+K+KQK + + +
Sbjct: 535 EISNQWFSQNIFAEAVEEGDLGKDDGEDETPIEKKSKNLSKPDKSKQKASKASLLSDQSL 594
Query: 599 NQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDDA 658
S+ E DFE+VPAP DS DSSSD+ V TKAEILACAKKMLRKKQREQ+LDDA
Sbjct: 595 PNSSKKEEDFEVVPAPATDSDSDSSSDDD----VHTKAEILACAKKMLRKKQREQMLDDA 650
Query: 659 YNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKK 718
YN++MF D+GLP WF+++E++HRQ ++P+TKEE+ AMKAQFKEI+ARPAKKVAEAKARKK
Sbjct: 651 YNKHMFVDEGLPKWFVDDEKQHRQPMKPITKEEVNAMKAQFKEINARPAKKVAEAKARKK 710
Query: 719 RVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAV-PKRPKKEYVVAKKGVQVRA 777
R A ++LEKVRKKAN ISD ADISDRSK K I++LYK A P++P+KE VV+KKGV V+
Sbjct: 711 RAAQKRLEKVRKKANTISDTADISDRSKDKMIDKLYKKAAEPRKPRKELVVSKKGVGVKV 770
Query: 778 GKGKVLVDPRMKKDSRTHGSGK----ARKGGSKKGNIGKARKGK 817
GKG+ VD RMK D+R G GK +KG K G GK GK
Sbjct: 771 GKGQKRVDRRMKSDARKRGGGKPGRNGQKGTGKAGQKGKRPAGK 814
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | ||||||
| TAIR|locus:2117487 | 821 | AT4G25730 [Arabidopsis thalian | 0.939 | 0.952 | 0.599 | 3.6e-247 | |
| POMBASE|SPAC1687.11 | 802 | spb1 "rRNA methyltransferase S | 0.906 | 0.940 | 0.351 | 1.8e-110 | |
| ASPGD|ASPL0000053007 | 806 | AN0092 [Emericella nidulans (t | 0.917 | 0.946 | 0.354 | 1.6e-109 | |
| MGI|MGI:1860295 | 838 | Ftsj3 "FtsJ homolog 3 (E. coli | 0.418 | 0.415 | 0.420 | 2.8e-109 | |
| DICTYBASE|DDB_G0284945 | 833 | fsjC "putative rRNA (uridine-2 | 0.920 | 0.919 | 0.344 | 3e-108 | |
| UNIPROTKB|E2RHC4 | 837 | FTSJ3 "Uncharacterized protein | 0.407 | 0.405 | 0.421 | 2.4e-106 | |
| UNIPROTKB|F1MY97 | 836 | FTSJ3 "Uncharacterized protein | 0.408 | 0.406 | 0.421 | 3e-104 | |
| ZFIN|ZDB-GENE-030131-9828 | 838 | ftsj "FtsJ homolog 3 (E. coli) | 0.890 | 0.884 | 0.331 | 4.9e-101 | |
| FB|FBgn0030720 | 817 | CG8939 [Drosophila melanogaste | 0.914 | 0.931 | 0.326 | 5.8e-98 | |
| WB|WBGene00019168 | 833 | H06I04.3 [Caenorhabditis elega | 0.919 | 0.918 | 0.331 | 1.1e-96 |
| TAIR|locus:2117487 AT4G25730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2381 (843.2 bits), Expect = 3.6e-247, P = 3.6e-247
Identities = 478/797 (59%), Positives = 599/797 (75%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGKVKGKHRLDKYYRLAKE G+RSRAS+KL+QLD+K+S L S+HAVLDLCAAPGGWMQVA
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVA 60
Query: 61 VQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120
V++VPVGSLVLG+DLVPI P+RG V++ QDIT+ EC++++K+VME+HGV AF+LVLHDGS
Sbjct: 61 VEKVPVGSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGS 120
Query: 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180
PNVGGAWAQEAMSQNALVIDSV+LAT+FLA G VTKVFRS+DY+SVLYCL +LFEKVE
Sbjct: 121 PNVGGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVE 180
Query: 181 VDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQKRH 239
V KP ASRSASAE YL+G+KY APAKIDPRLLD ++LF+ S EP RKVVDVL G+KQKR+
Sbjct: 181 VFKPPASRSASAETYLVGLKYLAPAKIDPRLLDYRHLFKESAEPTRKVVDVLGGSKQKRN 240
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALC 299
RDGYEDG++ LR+V+ A DFIWS NPL++LG+ TSI+F D A +K+H+LTTEE+K LC
Sbjct: 241 RDGYEDGESILRRVASAADFIWSENPLDVLGTTTSISFDDQASLPLKEHDLTTEEIKILC 300
Query: 300 DDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEEL 359
DDL VLGK DFKH+LKWRMQI+KA + EK V A E+EE+ D+++LNE+EEL
Sbjct: 301 DDLPVLGKNDFKHILKWRMQIRKALTP-EKKEV-AKPEPDVGKEDEENEDDKLLNELEEL 358
Query: 360 KYAMDQXXXXXXXXXXXXXXXXXXXXXTGMQIDVMQDDYTDHELFSLSSIKGKKDLAAVE 419
+D+ TG Q+DV++D + D+ELFSL++IKGKKDL AV+
Sbjct: 359 TNTVDRKKKQAKKILAKRRAKDKARKATGPQMDVLEDGFVDNELFSLNAIKGKKDLMAVD 418
Query: 420 YDDDDVNAAAEDSEDERPNRD-TQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRG 478
D+DD N A DSE+E + + SD DSDEER+KY EQ+EE+ +QAYE Y+ K+
Sbjct: 419 NDEDD-NGNAVDSENEDHGEGASDDSKDSDRDSDEERQKYTEQMEEIFEQAYERYMVKKE 477
Query: 479 GSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQE 538
GS QRKRA++A+A++ L EGD DE+ M YDSD ++ +ANPL+VPLDDG+ T+E
Sbjct: 478 GSAKQRKRARQAHAEK--LEEGDGDEE-MKIDYDSDMNEEKDEANPLVVPLDDGVVQTKE 534
Query: 539 EITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAA-GPKST 597
EI+N+WFSQ IFAEAV+ GDLGK SEDE K+++ S P+K+KQK + + +S
Sbjct: 535 EISNQWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASKASVLSDQSL 594
Query: 598 HNQVSEVEGDFEIVPAPGAXXXXXXXXXXXXXXXXXTKAEILACAKKMLRKKQREQILDD 657
N S+ E +FE+VPAP TKAEILACAKKMLRKKQREQ+LDD
Sbjct: 595 PNS-SKKEDEFEVVPAPATDSDSDSSSEDDVH----TKAEILACAKKMLRKKQREQMLDD 649
Query: 658 AYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXX 717
AYN++MF D+GLP WF+++E++HRQ ++PVTK+E+ AMKAQFKEI+
Sbjct: 650 AYNKHMFVDEGLPKWFVDDEKQHRQPMKPVTKDEVNAMKAQFKEINARPAKKVAEAKARK 709
Query: 718 XXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAV-PKRPKKEYVVAKKGVQVR 776
LEKVRKKAN ISD ADISDRSK K I++LYK A P++P+KE VV+KKGV V+
Sbjct: 710 KRAAQKRLEKVRKKANTISDTADISDRSKDKMIDKLYKKAAEPRKPRKELVVSKKGVGVK 769
Query: 777 AGKGKVLVDPRMKKDSR 793
GKG+ VD RMK D R
Sbjct: 770 VGKGQKRVDRRMKSDDR 786
|
|
| POMBASE|SPAC1687.11 spb1 "rRNA methyltransferase Spb1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 289/823 (35%), Positives = 443/823 (53%)
Query: 3 KVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQ 62
K K RLDK+Y+LAKE GYRSRA++KLVQL+ K+SFL + ++DLCAAPGGW+QVA +
Sbjct: 6 KKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASK 65
Query: 63 RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122
GSL++G+DL PI PI + +DIT +CR++++ ++ +A D+VLHDG+PN
Sbjct: 66 TCKPGSLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTW--KA-DVVLHDGAPN 122
Query: 123 VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182
VG AW Q+A Q LV+ S+KLA +FL GTFVTKVFRS+DY+++L+ KQLF KVE
Sbjct: 123 VGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEAT 182
Query: 183 KPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVD--VLRGTKQKRHR 240
KP +SR+ SAEI+++ YKAP K+DPR D + +F+ EP VD V K+KR R
Sbjct: 183 KPPSSRNVSAEIFVVCRGYKAPKKLDPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSR 242
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTTEEVKAL 298
+GY D D TL K LA++F+ +N+P++ILG+ I F D C + + ++TTEE+
Sbjct: 243 EGYADDDYTLHKTVLASEFVTANDPIQILGTSAEIVFPKDDEECQRLYNLDVTTEEILLC 302
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEE 358
C DL+VLGK++F+ +L+WR++I+ +K V E E D + R+ E+++
Sbjct: 303 CSDLQVLGKKEFRDILRWRLKIRDEMGIGKK--VEDEQKTVVEEIPEMDEEERLDQELQD 360
Query: 359 LKYA----MDQXXXXXXXXXXXXXXXXXXXXXTGMQIDVMQDDYTDHELFSLSSIKGKKD 414
L A + + M I + + + LF L++ + K
Sbjct: 361 LSEAERVKLKRERRKANQRKQREIVRMQMGMLAPMDIGLEHEAMGEDSLFGLATAE-KHG 419
Query: 415 LAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYV 474
L +E V +S DE + D + + DSD+ER ++LE LD Y +Y
Sbjct: 420 LKELENGTLPVT----ESVDEEVSTDNEV----EYDSDDER----DRLEADLDSMYSDYT 467
Query: 475 AKRGGSTMQRKRAKKAYAQEDQ-----LSEGDEDEDTM--HTSYDS-DKDQGDLDANPLM 526
++ S + + R KKA D + G E +D+ T++ + DKD+ L + L
Sbjct: 468 KRKAESDV-KYRVKKARGDLDDEEWNGIDNGTESDDSQIAETNFATPDKDR--LTTSLL- 523
Query: 527 VPLDDGIRPTQEEITNK---WFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKA 583
D G T++ ++ K +F Q+IF + +++ D + +++ A K E A
Sbjct: 524 ---DKG--STKDGLSRKARMFFDQDIF-DGIEDAD----ADVEIMSMNRAAIKKREAELA 573
Query: 584 KQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGAXXXXXXXXXXXXXXXXXTK---AEILA 640
Q ND G K +Q + E+VP A + AE +
Sbjct: 574 SQN--NDD-GSKG--DQSEDSNDHIEVVPVASAHDEDDDWNSDSDNDENNVEIVTAEAMT 628
Query: 641 CAKKML-RKKQREQILDDAYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQ 698
A+ + R+K + ++D+ YNR+ F +GLPDWFL+EE + +P+TKE + A++ +
Sbjct: 629 LAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAVLALREK 688
Query: 699 FKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAV 758
K ++ L++V KKA IS+ D+++ K K+I +L A
Sbjct: 689 MKALNARPIKKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEISRLVSRAT 748
Query: 759 PKRPKKE--YVVAK---KGVQVRA-G-KGKV-LVDPRMKKDSR 793
+PK + VVAK KG++ R G KGK +VD RMKKD R
Sbjct: 749 KSKPKAKPTLVVAKGPNKGLKSRPKGVKGKYKMVDSRMKKDLR 791
|
|
| ASPGD|ASPL0000053007 AN0092 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 290/819 (35%), Positives = 441/819 (53%)
Query: 3 KVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQ 62
K GK RLDK+YRLAKE GYR+RA++KLVQL+ K+ FL S +LDLCAAPG W QVA +
Sbjct: 5 KKHGKGRLDKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE 64
Query: 63 RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122
+P SL++G+DL PI PI ++ +QDIT +CRA ++ ++ H +A D VLHDG+PN
Sbjct: 65 CMPAQSLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLK-HW-KA-DTVLHDGAPN 121
Query: 123 VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182
VG AW Q+A SQ LV++S+KLAT+FL GTFVTKVFRS+DY+ +L+ KQLF VE
Sbjct: 122 VGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEAT 181
Query: 183 KPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP--RKVVDVLRGTKQKRHR 240
KP +SR+ SAEI+++ YKAP +IDP+ LD K++F +P V K+KR R
Sbjct: 182 KPPSSRNVSAEIFVVCRGYKAPKRIDPKFLDSKHVFAELADPTPNNEAKVFNPEKKKRKR 241
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEV 295
+GYE+GD T K T+FI + +P+ ILGS ++F GD A + + TT+E+
Sbjct: 242 EGYEEGDWTQFKEIPVTEFINTTDPIAILGSCNKLSFQQQPGGDLALATLDRLPETTDEI 301
Query: 296 KALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGE----NEEDADNR 351
+ C+DL+VLGK++F++LL+WR+++++ F K A E ++E A
Sbjct: 302 RNCCEDLKVLGKKEFRNLLRWRLKVREKFGLVVKKGQAKDDEAEEVAEIAPMDDELAIQE 361
Query: 352 VLNEMEELKYAMDQXXXXXXXXXXXXXXXXXXXX-XTGMQIDVMQ-DDYTDHELFSLSSI 409
L ++E + A + T M I + Q + FSL
Sbjct: 362 ELLRLKEKESARSKKERRKENERKRKEIVRMQMHMTTPMDIGMEQLGPGGEDATFSLKRA 421
Query: 410 KGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQA 469
+ K AA ++ A +SE E +T+ DSD+E ++LE LD
Sbjct: 422 E-KAGAAAAMASGKEL--AVIESESEESESETEYD-----DSDDE----GDRLERELDSL 469
Query: 470 YENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMVPL 529
YE Y ++ + RAKKA ++D E DE E + + D+ D +A P VP
Sbjct: 470 YEQYQERKEDKD-SKLRAKKA--RKDY--EADEWEGFSDSDKEGSDDEED-EAKP-NVP- 521
Query: 530 DDGIRPTQEEITNK---WFSQEIFA--EAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAK 584
+ PT ++N +F Q+IF + V++ + G+ + T +++ E+ E+ +
Sbjct: 522 ---VVPTNGALSNNAALFFDQDIFQGLDDVEDEEDEAEGTNNMTVANEREEQQEEEEEEQ 578
Query: 585 QKMANDAAGPKSTHNQVSEVEGDFEIVPAPGAXXXXXXXXXXXXXXXXXTKAEILACAKK 644
K ++AA K + + E AE +A A++
Sbjct: 579 PK--SEAAPEKKKKVKETANSKPSEDSSDDEYEDTDEPRKKNGQLDIDIITAEAMALAQQ 636
Query: 645 MLR-KKQREQILDDAYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEI 702
M +K+ + + DD +NRY F D DGLP+WFL++E +H + RP+TK AA++ +++ I
Sbjct: 637 MATGEKKSQDVFDDGFNRYAFRDVDGLPEWFLDDENKHSKPNRPITKAAAAAIQEKWRAI 696
Query: 703 DXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRP 762
+ +EK+RKK+ +++D +S+R K + I ++ A K+P
Sbjct: 697 NARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADDETMSERDKAQAIARMMSRAAKKKP 756
Query: 763 KK--EYVVAK---KGVQVRA-G-KGKV-LVDPRMKKDSR 793
K+ + VVAK +G+ R G KGK +VD RMKKD R
Sbjct: 757 KQNVKLVVAKGGNRGISGRPKGVKGKYKIVDARMKKDVR 795
|
|
| MGI|MGI:1860295 Ftsj3 "FtsJ homolog 3 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 2.8e-109, Sum P(4) = 2.8e-109
Identities = 153/364 (42%), Positives = 234/364 (64%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG-SVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F+ V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDAKFFDPKFAFKEVEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I+ D + H TTE+++ C
Sbjct: 239 EGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEISIDD---EELAQHPATTEDIRVCCQ 295
Query: 301 DLRVLGKQDFKHLLKWRMQI-----KKAFSSAEKATVPASASAPTEGENEED-ADNRVLN 354
D++VLG+++ + LL WR ++ KK A+ + S+ EG+ EE A+ +
Sbjct: 296 DIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSEEEEEGDEEEAVAETKQAP 355
Query: 355 EMEE 358
E EE
Sbjct: 356 EEEE 359
|
|
| DICTYBASE|DDB_G0284945 fsjC "putative rRNA (uridine-2'-O-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 287/832 (34%), Positives = 437/832 (52%)
Query: 1 MGKVK---GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWM 57
MG+ K K RLDK+Y +AKE GYRSRA++KL+QL+ K++FL ++ A LDLCAAPGGWM
Sbjct: 1 MGQKKKKLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWM 60
Query: 58 QVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117
QVA + +PV SL++G+DLVPI +R + L +DIT +CR +KK ++ V D+ LH
Sbjct: 61 QVASKYMPVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKV---DVCLH 117
Query: 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177
DG+PN+G +W Q+A Q L + ++KLAT+FL G FVTKVFR DY+S+++ +LF+
Sbjct: 118 DGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFK 177
Query: 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVDVLRGTKQK 237
KVE KP +SR+ASAEI+++ + P +IDP+LLD K++F+ E +KV DVL K+K
Sbjct: 178 KVESTKPPSSRNASAEIFVVCQGFLNPKRIDPKLLDPKFVFKEIQEVKKV-DVL-SEKKK 235
Query: 238 RHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKA 297
+R GYEDG T L K +DF+ SN L+ L + + F D A + HELTT E+K
Sbjct: 236 VNRAGYEDGVTVLYKKGFISDFVNSNEHLQDLANFNAFEF-DEAAKIFEQHELTTPEIKE 294
Query: 298 LCDDLRVLGKQDFKHLLKWRMQIKKAFSS-AEKATVP--ASASAPTEGEN--EEDADNRV 352
L DL+VL K DF+ ++KW KKA ++ EK P P E + E+ + +
Sbjct: 295 LVKDLKVLNKNDFQKIIKW----KKAMAAYKEKLDNPDEEETEKPEEKKELTAEEMEENL 350
Query: 353 LNEMEELKYAMDQXXXXXXXXXXXXXXXXXXXXXTGMQI--DVMQDDYTDHELFSLSSIK 410
EM+E +++ M I D +++ TD +L+S+ K
Sbjct: 351 QEEMKEYLALVEKKKRKEKKRQNELKRKHQRKIELTMHIPGDKIEET-TDGDLYSM---K 406
Query: 411 GKKDLAA-VEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQA 469
GK + + D D+++ DS+D + D + S + D+E ++QL+E +
Sbjct: 407 GKDEFDEDIVADHSDISSDEFDSDDSDDDDDDDNNGDSKLIDDDEY--LEQQLDEQY-KL 463
Query: 470 YENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDED----EDTMHTSYDSDKDQGDLDANPL 525
Y+ + K+ + + KK +D +E DE+ ++ + +K + + DA +
Sbjct: 464 YQQRIRKKAAK-LDDVKVKKDKIGQDGYNEDDEEFVEEQEESNPLLVGNKRK-EPDAQAV 521
Query: 526 MVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSE----DETQVDKQAEKHSIPE 581
D E N S+ +E Q+GD + D +++ KQ + + P
Sbjct: 522 SSLFFDNELFGGVEYRNPGDSE---SEPEQDGDDDQDDENNKPIDISKLKKQKPQAAQPI 578
Query: 582 KAKQKMANDAA-GPKSTHNQVSEVEGD----------------FEIVPAPGAXXXXXXXX 624
KQK N A G + + Q + D FE VP
Sbjct: 579 TKKQKTTNSAEFGKQKSKYQKNPTLDDKDDQDDDDDKGNSIKGFEEVPVQ-----EEVEY 633
Query: 625 XXXXXXXXXTKAEILACAKKMLRKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAI 684
K + A + ++RKK R+ ++DD++N+Y F+D GLP+WF ++E RH +A
Sbjct: 634 ESDSDEDIDDKIKTKALGEFLIRKKSRQDLIDDSFNKYAFNDTGLPNWFTDDENRHNKAQ 693
Query: 685 RPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDR 744
P+TKE + ++ + KEID +EK R KA+ I D ++S+R
Sbjct: 694 TPLTKEMVDEIRRKIKEIDDRPIKKIAEAKARKKYRLGKKMEKTRDKASSIVDNPEMSNR 753
Query: 745 SKRKQIEQLYKSAVPK--RPKKEYVVAKKGVQVRAGKGKV-LVDPRMKKDSR 793
K K IE+LY K +PKK ++AKK G GK +VD RMKKD R
Sbjct: 754 EKSKAIEKLYSGTDKKNMKPKKIIMIAKKSKTAGGGTGKYKIVDKRMKKDLR 805
|
|
| UNIPROTKB|E2RHC4 FTSJ3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 2.4e-106, Sum P(4) = 2.4e-106
Identities = 148/351 (42%), Positives = 229/351 (65%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG-SVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F+ V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEIEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I+ D + H TTE++ A C
Sbjct: 239 EGYAEGDLTLYHRASVTDFLRAANPVDFLSKASEISLDD---EELAQHPATTEDIWACCQ 295
Query: 301 DLRVLGKQDFKH--LLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDAD 349
D++VLG+++ + LL WR ++++ + K A + + GE EE+ +
Sbjct: 296 DIKVLGRKELRDRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEEEEEE 346
|
|
| UNIPROTKB|F1MY97 FTSJ3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 3.0e-104, Sum P(4) = 3.0e-104
Identities = 150/356 (42%), Positives = 229/356 (64%)
Query: 1 MGKVK--GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQ 58
MGK GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+Q
Sbjct: 1 MGKKSKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ 60
Query: 59 VAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118
VA + +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+D
Sbjct: 61 VAAKFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLND 117
Query: 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178
G+PNVG +WA +A SQ L + +++LA FL G F+TKVFRS+DY +L+ +QLF +
Sbjct: 118 GAPNVGASWAHDAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWIFQQLFRR 177
Query: 179 VEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG-SVEPRKVVDVLRGTKQK 237
V+ KP ASR SAEI+++ + AP K+D + D K+ F+ V+ + V +++ TK+K
Sbjct: 178 VQATKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELV--TKKK 235
Query: 238 RHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKA 297
+GY +GD TL + TDF+ + NP++ L + I+ D + H TTE+++
Sbjct: 236 PKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEISLDD---EELAQHPATTEDIRV 292
Query: 298 LCDDLRVLGKQDFKHLLKWRMQI-----KKAFSSAEKATVPASASAPTEGENEEDA 348
C D++VLG+++ + LL WR ++ KK A+ + S+ EGE E+ A
Sbjct: 293 CCQDIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEEEGEEEQAA 348
|
|
| ZFIN|ZDB-GENE-030131-9828 ftsj "FtsJ homolog 3 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 277/836 (33%), Positives = 432/836 (51%)
Query: 1 MGK-VK-GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQ 58
MGK +K GK R DK+Y LAKE GYRSR+S+KL+QL+ KF FL+ + A++DLCAAPGGW+Q
Sbjct: 1 MGKKLKVGKTRKDKFYHLAKETGYRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQ 60
Query: 59 VAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118
VA + +PV SLV+G+DLVPI PI V+L++DIT +CR ++K ++ V D+VL+D
Sbjct: 61 VASKFMPVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKV---DVVLND 117
Query: 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178
G+PNVG W +A SQ L + ++KLA +FLA GTF+TKVFRS+DY +++ +Q F+K
Sbjct: 118 GAPNVGANWQHDAFSQANLTLMALKLACEFLAKGGTFITKVFRSKDYQPLMWIFQQFFKK 177
Query: 179 VEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG-SVEPRKVVDVLRGTKQK 237
V+ KP ASR+ SAEI+++ + AP KID + D K+ F+ V+ + V +++ K+K
Sbjct: 178 VQATKPQASRNESAEIFVVCQGFLAPDKIDNKFFDPKHAFKEVDVQVKTVKELVN--KKK 235
Query: 238 RHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKA 297
+GY DGD TL T+F+ + NP++ L ITF DP ++ H LT+ E++
Sbjct: 236 PKAEGYSDGDLTLYHKFTITEFLKAENPVDFLSKANEITFDDPL---LESHPLTSAEIRE 292
Query: 298 LCDDLRVLGKQDFKHLLKWRMQIKK----------------AFSSAEKATVPASASAPTE 341
C D++VLG+++ + LL WR +++K A S E++ S +
Sbjct: 293 CCSDVKVLGRKELRLLLSWRSKLRKFLAKKLRQEAKQLDQEASSDDEQSDTDEKESKKKK 352
Query: 342 GEN---EEDADNRVLNEMEELKYAMDQXXXXXXXXXXXXXXXXXXXXXTGMQID---VMQ 395
E EED D + ++ ELK ++ +++D V
Sbjct: 353 SEEKKEEEDEDEAMEKKLTELK--AEEFAELKRKKKKLLKERRKQRERVELKMDLPGVSI 410
Query: 396 DDYTDHELFSLSSIKGKKDLAAVEYDD-DDVNAAAEDSEDERPNRDTQEHVSSDIDSDEE 454
D D +FSL SI+ + L + D +A ED E E D H+S D + ++E
Sbjct: 411 ADAGDSSMFSLGSIRKSQGLHQLAQGDMSAADALLEDDEQE----DV--HLS-DEEQEDE 463
Query: 455 RRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSD 514
R L+ D E + ++ ++ K KK +Q +GDED
Sbjct: 464 RMSLASDLDS--DDLQE--IQQKEEQMLKNKPKKKKKVSFEQQDDGDED----------- 508
Query: 515 KDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQV---- 570
+ N L+V L+ G +E T+ WFS++IFAE N D + +TQ+
Sbjct: 509 ------NKNELLVELE-GKDERKERETSMWFSKDIFAELDLNDDTDAMNELKQTQILQTG 561
Query: 571 -----DKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFE-----------IVPAP 614
Q E+ + P+K +QK+A + K + S+ D E V
Sbjct: 562 RGKKRKAQQEEEAEPKKPEQKVATPSQEVKEAEDSDSDDSSDDEREIAQMKQASAAVGTN 621
Query: 615 GAXXXXXXXXXXXXXXXXXTK---AEILACAKKMLRKKQREQ-ILDDAYNRYMFDDD--G 668
GA + AE LA ++ K+RE+ ++D +++R+ +D
Sbjct: 622 GAEENDNIQVIPVEKTNKRARVLDAEGLALGAQIATSKKRERDLIDGSFHRFANSEDMTE 681
Query: 669 LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKV 728
+P WF+++E++HR+ PVTK+ + K ++KEI+ +E+
Sbjct: 682 VPAWFVDDEKKHRKRPVPVTKDMVEEYKQKWKEINARPIRRVAEAKARKKRRTLKKMEQA 741
Query: 729 RKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV--QVRAGKG 780
+KKA + + DIS+R K Q++ +YK A + K+E YVVAKKGV +VR G
Sbjct: 742 KKKAEAVVNTVDISEREKMAQLKSIYKKAGVGKEKREVTYVVAKKGVGRRVRRPAG 797
|
|
| FB|FBgn0030720 CG8939 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 271/830 (32%), Positives = 416/830 (50%)
Query: 1 MGK-VK-GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQ 58
MGK K GK R DK+Y+LAKE G RSRA++KL+QL+ KF FL+ S LDLCAAPGGWMQ
Sbjct: 1 MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQ 60
Query: 59 VAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118
VA Q +PV S+V+G+DL PI PI G + L +DIT +CR + K ++ +A D+VLHD
Sbjct: 61 VAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSW--KA-DVVLHD 117
Query: 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178
G+PNVG W +A Q L ++++KL+TQFL G FVTKVFRS+DY+++L+ LKQLF+K
Sbjct: 118 GAPNVGRNWLYDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKK 177
Query: 179 VEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG-SVEPRKVVDVLRGTKQK 237
V KP+ASR SAEI+++ Y AP IDPRLLD KY+F+ ++ +K +L KQK
Sbjct: 178 VHATKPSASRKESAEIFVVCQGYLAPDHIDPRLLDSKYVFEELDLDAKKKSSLLHPEKQK 237
Query: 238 RHR-DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVK 296
R + +GY D LR AT+F+ + N L L + SI D I +H+ TT E+
Sbjct: 238 RIKAEGYTAQDIALRNDLAATEFLKAENALAALQGIGSIRIDD---QRIANHKKTTPEIL 294
Query: 297 ALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASAS--AP---TEGENEEDADNR 351
C DL+VLG++D K L++W +++ F E V +A+ P T+ E E+ D
Sbjct: 295 ECCKDLKVLGRKDIKGLVQWWKDVRELFVEKETPLVVGNAADEKPKPLTQAEIEDMEDAE 354
Query: 352 VLNEMEELKYAMDQXXXXXXXXXXXXXXXXXXXXXTGMQIDVMQDD----YTDHELFSLS 407
+ ++E + ++ + + + DD +HE+F L
Sbjct: 355 LQTQIETI--VEEEKKDLKRKRKKTLKTKAKLHEKMNLNMVIKGDDGPVEEMEHEIFDLK 412
Query: 408 SIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLD 467
+I+ +L E D + A ++S+ E ++ D + + YD+ +E
Sbjct: 413 NIRTSAELD--ELLDVQPDFAVDESQPEETKLPKYKYFDKDEGNINDDLNYDDDNDEEQS 470
Query: 468 QAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDANPLMV 527
+A ++ + K+ LS+ D DE + K + + NPL+
Sbjct: 471 EASDDE---------DQINDKQGLG----LSDDDNDEGNAKGK-NKRKKRSE---NPLIK 513
Query: 528 PLDDGIRPTQ-EEITNKWFSQEIFAEAVQNGD------LGKLGSE---------DETQVD 571
D + T+ E+ W+ +++ + +Q+ D L L E E+ +
Sbjct: 514 SNDFRDKNTKREQRVQLWYEKDVL-QNIQSDDDEETYDLNNLAKEFKAKGVAVLGESTLT 572
Query: 572 KQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGAXXXXXXXXXXXXXXX 631
A + + K ++ A K + ++ SE E D A
Sbjct: 573 PDANEEVVQGKKAKRRARHETATKDSSSESSESEDD-----ANEDSDGEQPAAGTNAKKV 627
Query: 632 XXTKAEILACAKKMLRKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEE 691
++ E+ A KK R ++D A+NRY F+D+ +P WF +E H PV KE
Sbjct: 628 RLSENEMALGALLTRSKKTRRDLIDAAWNRYAFNDENVPVWFKLDEDEHMTKPTPVPKEL 687
Query: 692 IAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIE 751
A + + +E++ L K +K A I + +D ++ K KQ++
Sbjct: 688 TAEYQRKLQEVNVRPIKKVMEAKARKHRRATKRLAKAKKMAEKIMENSDATNHEKSKQLK 747
Query: 752 QLYKSAVPKRPKKEYVVAKKGVQVR-----AG-KGKV-LVDPRMKKDSRT 794
++YK A K+ + YVVAKK R AG KG+ +VDPR KKD R+
Sbjct: 748 KVYKKAQEKKKEVTYVVAKKQTAARRARRPAGVKGRYKVVDPREKKDKRS 797
|
|
| WB|WBGene00019168 H06I04.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 272/821 (33%), Positives = 411/821 (50%)
Query: 1 MGK-VK-GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQ 58
MGK VK GK R DKYY+LAKE GYRSRA++KLVQL+ +F FL S A +DLCAAPGGWMQ
Sbjct: 1 MGKKVKIGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQ 60
Query: 59 VAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118
VA Q +PV SL++G+DL PI PI+ ++L+ DIT E RA +KK ++ D VLHD
Sbjct: 61 VASQFMPVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSA---DCVLHD 117
Query: 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178
G+PNVG W +A QN L + ++KLATQ L GTFVTKVFRS DYS ++ ++LF++
Sbjct: 118 GAPNVGLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKR 177
Query: 179 VEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF---QGS--VEPRKVVDVLRG 233
V V KPAASR SAEI+++ Y+ P K+ LD K +F GS +P ++L G
Sbjct: 178 VHVWKPAASRLESAEIFVVCEVYQKPDKVGAEYLDPKKVFANPDGSEGTKPNPQ-NLLIG 236
Query: 234 TKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTE 293
++K +GY+ + ATDFI S+ L+ILG+ IT D K+HE TTE
Sbjct: 237 KQKKAKAEGYDTDSLAIHSTINATDFIKSSGYLDILGTANVITLDDEKW---KNHEKTTE 293
Query: 294 EVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGEN--EEDADNR 351
EV +D++VLG ++ + LL+WR + + KA + E EN EE ++R
Sbjct: 294 EVIEYMNDVKVLGPRELRVLLRWRKSMLETLEEQRKAVEGEAKEVEIE-ENLTEEQLEDR 352
Query: 352 VLNEMEEL--KYAMDQXXXXXXXXXXXXXXXXXXXXXTGMQIDVMQDD---YTDHELFSL 406
+ E++EL K + D+ +++ + D+ D E+F L
Sbjct: 353 AMAEIDELIAKASEDEKAALKKKKKKMLKAKARVLKRRELKMIIDGDEGPQAEDQEVFQL 412
Query: 407 SSIKGKKDLAAVEYDDD--DVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEE 464
I+ K+LA + D D + + DE E + EE DE E
Sbjct: 413 KKIRKAKELAEITKDTQAPDFDMMEDGDSDEEEGLGEGEWETHG----EEGENSDEDENE 468
Query: 465 VLDQAYENYVAKRGGSTMQRKRAK-KAYAQEDQLSE--GDEDEDTMHTSYDSD--KDQGD 519
++ + K G S M+++ A+ +++ +++++S DED+D + + K++
Sbjct: 469 LI------HTEKSGMSKMEKRNARTESWFEKEEISGLVSDEDDDDEMNAIEKHIGKNRSK 522
Query: 520 LDAN-PLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHS 578
N V DD + + K + F D + SE E+ AE
Sbjct: 523 KTENYENTVSFDDSKGKKKGKKGGKGGEDDGF----NTNDADEQASESESS---DAE--- 572
Query: 579 IPEKAKQKMAN-DAAGPKSTHNQVSEVEGDFEIVPAPGAXXXXXXXXXXXXXXXXXTKAE 637
+ E AK+K++ DA ++ E + E
Sbjct: 573 MDEVAKEKLSRFDAQIDLDDDDEEERYEDEGRRAAKRKCDKKIIGEDLKPVAKKRKLTPE 632
Query: 638 ILACAKKMLRK-KQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMK 696
LA ++M+ K + D+A+NRY +D+ LPDWF ++E++H PVTKE++A +
Sbjct: 633 QLAIGEQMIYSAKAARNLEDEAWNRYANNDEDLPDWFADDEKKHYFKQTPVTKEQVALYR 692
Query: 697 AQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKS 756
+ +E + LE +KKA I + + K ++++++Y +
Sbjct: 693 ERMREFNARPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYAN 752
Query: 757 AVPKRPKK-EYVVAKKGVQVRAGK--GKV-LVDPRMKKDSR 793
A K KK E V KG + + G+ G+ LVD RMKKD R
Sbjct: 753 ATRKEKKKVELVRMTKGKKGKTGRPNGQYKLVDSRMKKDLR 793
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P25582 | SPB1_YEAST | 2, ., 1, ., 1, ., - | 0.3216 | 0.8557 | 0.8466 | yes | no |
| Q6BNQ8 | SPB1_DEBHA | 2, ., 1, ., 1, ., - | 0.3241 | 0.8641 | 0.8652 | yes | no |
| Q5RAS1 | SPB1_PONAB | 2, ., 1, ., 1, ., - | 0.3318 | 0.8870 | 0.8775 | yes | no |
| Q5BH88 | SPB1_EMENI | 2, ., 1, ., 1, ., - | 0.3680 | 0.8834 | 0.9119 | yes | no |
| O42832 | SPB1_SCHPO | 2, ., 1, ., 1, ., - | 0.3637 | 0.9182 | 0.9526 | yes | no |
| Q6CV12 | SPB1_KLULA | 2, ., 1, ., 1, ., - | 0.3416 | 0.9134 | 0.9123 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00036355001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00033408001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa) | • | • | • | 0.938 | ||||||
| GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | • | • | 0.874 | ||||||
| GSVIVG00037695001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa) | • | • | • | 0.851 | ||||||
| GSVIVG00031075001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa) | • | • | • | 0.844 | ||||||
| GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.825 | |||||||
| GSVIVG00017910001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa) | • | • | • | 0.819 | ||||||
| GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | • | 0.817 | |||||||
| GSVIVG00027646001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa) | • | • | 0.813 | |||||||
| GSVIVG00028481001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa) | • | • | 0.809 | |||||||
| GSVIVG00021672001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa) | • | • | 0.805 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 832 | |||
| pfam07780 | 212 | pfam07780, Spb1_C, Spb1 C-terminal domain | 2e-62 | |
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 4e-62 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 7e-57 | |
| TIGR00438 | 188 | TIGR00438, rrmJ, cell division protein FtsJ | 3e-45 | |
| pfam11861 | 154 | pfam11861, DUF3381, Domain of unknown function (DU | 9e-38 | |
| PRK11188 | 209 | PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov | 2e-29 |
| >gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 2e-62
Identities = 104/201 (51%), Positives = 143/201 (71%), Gaps = 9/201 (4%)
Query: 602 SEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDDAYNR 661
S+ + +FE+VPA + D D+ +D+ D AE LA AK + RKK RE ++DD++NR
Sbjct: 4 SDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEALALAKLLARKKTREDLIDDSFNR 63
Query: 662 YMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRV 720
Y F DDDGLPDWF+++E++H + P+TKEE+AA K + KEI+ARP KKVAEAKARKK
Sbjct: 64 YSFNDDDGLPDWFVDDEKKHNKPQLPITKEEVAAYKEKLKEINARPIKKVAEAKARKKMR 123
Query: 721 AMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGVQVRAG 778
A+++LEK +KKA I++ DIS+R K KQI++LYK A K+ K++ YVVAKKG + +AG
Sbjct: 124 ALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAG 183
Query: 779 KGK------VLVDPRMKKDSR 793
+ K +VDPRMKKD R
Sbjct: 184 RPKGVKGKYKVVDPRMKKDLR 204
|
This presumed domain is found at the C-terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis. Length = 212 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 4e-62
Identities = 77/199 (38%), Positives = 121/199 (60%), Gaps = 3/199 (1%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
+H D YY+ AK+ GYRSRA++KL++L+ KF + V+DL AAPGGW QVA +++
Sbjct: 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG 68
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
G ++ +D++P+ PI G + L+ DIT + +K++E G D+VL D +PN G
Sbjct: 69 AGGKIVAVDILPMKPIPGVIFLQGDITDEDTL---EKLLEALGGAPVDVVLSDMAPNTSG 125
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
+ + L +++ A + L P G+FV KVF+ +D+ +L L++LF KV++ KP
Sbjct: 126 NRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPK 185
Query: 186 ASRSASAEIYLLGIKYKAP 204
ASR S EIYL+ +K
Sbjct: 186 ASRKRSREIYLVAKGFKGK 204
|
Length = 205 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 7e-57
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 22 YRSRASWKLVQLDSKFSF-LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP 80
Y SRA++KL+++D +F VLDL AAPGG+ QV ++R G V+ +DL P+ P
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERGGAG-KVVAVDLGPMEP 59
Query: 81 IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVID 140
I+G L DIT PE ++++++ DLVL DG+PNV G ++ LV+
Sbjct: 60 IQGVYFLRGDITDPETLEKLRELLPG----KVDLVLSDGAPNVSGIENTDSFISLQLVLA 115
Query: 141 SVKLATQFLAPKGTFVTKVFRSQDYS-SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGI 199
++ LA + L P G FV KVF+ ++S +L LK+ FEKV + KP ASR +S+E YL+ +
Sbjct: 116 ALLLALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSEEYLVCL 175
Query: 200 KY 201
+
Sbjct: 176 GF 177
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-45
Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY+ AK+ YRSRAS+KL+QL+ KF ++ VLDL AAPGGW QVAV++V V
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRV 60
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+ +DL P+ PI + D T E + K+ E G D+V+ D +PN+ G W +
Sbjct: 61 IAVDLQPMKPIENVDFIRGDFTDEEV---LNKIRERVGDDKVDVVMSDAAPNISGYWDID 117
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
+ LV ++ +A + L PKG FV KVF+ ++ L L++LFEKV+V KP ASR
Sbjct: 118 HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKR 177
Query: 191 SAEIYLLGIKY 201
SAE+Y++ ++
Sbjct: 178 SAEVYIVAKRF 188
|
Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188 |
| >gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381) | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-38
Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 230 VLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHE 289
VL+ K+KR R+GYE+GD TL A++FI S +P+++LG I+F D A AIK H+
Sbjct: 1 VLKPEKKKRKREGYEEGDYTLYHTIPASEFIKSEDPVDLLGKYNKISFDD-AWKAIKKHK 59
Query: 290 LTTEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDAD 349
TT E+K C DL+VLGK+DFK LLKWR +++K +K E +E+
Sbjct: 60 QTTPEIKECCKDLKVLGKKDFKKLLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQ 119
Query: 350 NRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKAR 384
L E E K + + K+RE + K+ K++ +
Sbjct: 120 IDELLEKELAK--LKREKRRENERKQKEILKEQMK 152
|
This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154 |
| >gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 8 HRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVG 67
H DKY + A++ G RSRA +KL ++ + V+DL AAPGGW Q AV ++
Sbjct: 17 HFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDK 76
Query: 68 SLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAW 127
V+ D++P+ PI G L+ D +K ++E G +V+ D +PN+ G
Sbjct: 77 GRVIACDILPMDPIVGVDFLQGDFRDE---LVLKALLERVGDSKVQVVMSDMAPNMSGTP 133
Query: 128 AQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAAS 187
A + LV ++ + LAP G+FV KVF+ + + L ++ LF KV+V KP +S
Sbjct: 134 AVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSS 193
Query: 188 RSASAEIYLLGIKYK 202
R+ S E+Y++ K
Sbjct: 194 RARSREVYIVATGRK 208
|
Length = 209 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 100.0 | |
| PF07780 | 215 | Spb1_C: Spb1 C-terminal domain; InterPro: IPR01292 | 100.0 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 100.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 100.0 | |
| PF11861 | 159 | DUF3381: Domain of unknown function (DUF3381); Int | 100.0 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 100.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 100.0 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 100.0 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.95 | |
| KOG3673 | 845 | consensus FtsJ-like RNA methyltransferase [RNA pro | 99.65 | |
| KOG3674 | 696 | consensus FtsJ-like RNA methyltransferase [RNA pro | 99.62 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.58 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.31 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.28 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.21 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.19 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.15 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 99.14 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.1 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.09 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.09 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.08 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.06 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.06 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.04 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.01 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.01 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.0 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.99 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.98 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.98 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.98 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.95 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.95 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.94 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.94 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.93 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.93 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.92 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.91 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.9 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.9 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.88 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.87 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.87 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.87 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.86 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.84 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.83 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.83 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.83 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.83 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.79 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.79 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.78 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.78 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.77 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.77 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.77 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.76 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.76 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.76 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.76 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.74 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.74 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.73 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.73 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.73 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.71 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.71 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.7 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.7 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.69 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.69 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.69 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.68 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.68 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.67 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 98.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.66 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.65 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.65 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.64 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.64 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.63 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.61 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.6 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.58 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.57 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.56 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.55 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.55 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.54 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.54 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.54 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.53 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.51 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.5 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.49 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.45 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.44 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.44 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.38 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.38 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.38 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.37 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.37 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.36 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.35 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.35 | |
| PLN02366 | 308 | spermidine synthase | 98.35 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.35 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.35 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.34 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.34 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.31 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.3 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.29 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.28 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.27 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.23 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.22 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.19 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.18 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.16 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 98.16 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.16 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.14 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.13 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.12 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.1 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.1 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.08 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.07 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.05 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.04 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.04 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.04 | |
| PLN02476 | 278 | O-methyltransferase | 98.02 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.02 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.01 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.99 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.94 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.94 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.94 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.94 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.92 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.87 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.83 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.83 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.83 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.82 | |
| PLN02823 | 336 | spermine synthase | 97.78 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.78 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.76 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.75 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.73 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.71 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.69 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.68 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.68 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.68 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.65 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.65 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.65 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.63 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.57 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.56 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.56 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.54 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.47 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.44 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.4 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.37 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.33 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.32 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.31 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.3 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.25 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.22 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.18 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.18 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.17 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.17 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.16 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.15 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.13 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.13 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.12 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.08 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 97.07 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.04 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.03 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.02 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.97 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.87 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.76 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.76 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.73 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.7 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.68 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.68 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.68 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.54 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.51 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.51 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.38 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.29 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.29 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.18 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.14 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.08 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.04 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.01 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.99 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.93 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.92 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 95.74 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 95.68 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.4 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.11 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 95.03 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.95 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.87 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 94.65 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.6 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 94.59 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.18 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.16 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.12 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.07 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.51 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 93.46 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.38 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.26 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 93.14 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 92.93 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 92.91 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.86 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 91.88 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.02 | |
| PRK13699 | 227 | putative methylase; Provisional | 90.7 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 90.48 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.56 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 89.25 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 88.4 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 88.39 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 87.88 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 87.57 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.51 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 86.95 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.66 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 86.63 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.51 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 85.23 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 85.14 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.11 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 84.73 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.64 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.57 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.32 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 84.31 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 84.24 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 84.22 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.56 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 83.51 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 83.34 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.32 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 82.36 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 82.25 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 81.96 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 81.83 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.61 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 81.42 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 81.4 | |
| PRK05717 | 255 | oxidoreductase; Validated | 81.02 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 80.9 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 80.71 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 80.29 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.26 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 80.07 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.07 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 80.05 |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-177 Score=1467.79 Aligned_cols=754 Identities=43% Similarity=0.698 Sum_probs=635.5
Q ss_pred CCCcc--CCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC
Q 003302 1 MGKVK--GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 1 mgk~k--~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~ 78 (832)
|||++ ||+|+|+||++|++.|||+|+||||+|||.+|.||.+++.||||||+||||+|++++.||+++.||||||.||
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 99943 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 79 APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 79 ~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.|+|+|.+++.|||+..|+..++..+..|++ |||||||+||||+.|.+|+|.|++|++.+|++|+.+|+.||+||++
T Consensus 81 kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a---dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 81 KPIPNCDTLVEDITTDECRSKLRKILKTWKA---DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred ccCCccchhhhhhhHHHHHHHHHHHHHhCCC---cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccCCCC-ccccccccccccc
Q 003302 159 VFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQK 237 (832)
Q Consensus 159 VFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~~~~-~~~~~~~~~~~~k 237 (832)
+|++.+|+.|+|+|.++|.+|++++|++||..|+|+||||.||++|++++|+++||.+||.++..+ ...+.+|+|+||+
T Consensus 158 vfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~vf~e~~~~a~~~~~~l~~eKkk 237 (780)
T KOG1098|consen 158 VFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKLVFEEFPDGAKKQVKLLGPEKKK 237 (780)
T ss_pred cccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHHHHhhcccccccchhhcCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998654 4568999999988
Q ss_pred cCCCCccCCCceeeeccchhhhhcCCChhHhhcccceeeecCccccccccCCCChHHHHHhhhhhhhcCHHHHHHHHHHH
Q 003302 238 RHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQDFKHLLKWR 317 (832)
Q Consensus 238 ~~~~gy~~~~~~~~~~~~~~~f~~~~~p~~~l~~~~~i~f~~~~~~~~~~~~~tt~ei~~~c~Dlkvlgk~d~~~llkwr 317 (832)
|. +||++|+++|||+++++|||+++|||+|||++|+|+|||++|+ +|+.||+||++||+||+|||++|||.||+||
T Consensus 238 r~-eGY~~~d~~L~~~~satdFlrsenpld~Lg~~~~I~iDDe~~~---nh~~TTeEi~~cc~DLkVLGkkd~r~iLrWR 313 (780)
T KOG1098|consen 238 RA-EGYEDDDLALHKTLSATDFLRSENPLDILGTANEITIDDEEWK---NHKKTTEEILECCKDLKVLGKKDFRVILRWR 313 (780)
T ss_pred cc-cCcccchHHHHHHhHHHHHHhhcCHHHHHhccceEEeCCHHHh---cCccCcHHHHHHHHHhhhhChHHHHHHHHHH
Confidence 88 9999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-ccccC
Q 003302 318 MQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQI-DVMQD 396 (832)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ee~~~~~el~~l~~~~~~~~kr~kkk~~~~k~k~~~r~~~~m~~-~~~~~ 396 (832)
++||+.+ +...+ . .+.+..+..+++++|+++|++.|++|.+.+.+..||+||+.++.+||+++||+|+|.+ ++|+.
T Consensus 314 k~ire~l-~~~~~-v-~~~e~~e~e~~plteEeeld~~l~~l~E~e~~~lkRkkkk~~k~k~k~~~r~~l~m~~~gd~g~ 390 (780)
T KOG1098|consen 314 KKIRETL-GEQKK-V-VDGEADEVEEEPLTEEEELDKLLAELSEDEKAALKRKKKKALKAKAKELERMELKMIIPGDIGP 390 (780)
T ss_pred HHHHHHh-ccccc-c-ccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCh
Confidence 9999998 44332 1 1113334444778999999999999999999999999999999999999999999999 88888
Q ss_pred CCCCcccccccccccchhhhhhhcCCccccccccCCcccCCCCCccccCCCCCCchHHHhHHHHHHHHHHHHHHHHHHHH
Q 003302 397 DYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAK 476 (832)
Q Consensus 397 ~~~~~~lF~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~le~~~d~~~~~~~~~ 476 (832)
+..+.+||+|++|.+++.|..|.++.+.+.++ ....+ +.++++. + .| +.+.|+++|+.||..|..+
T Consensus 391 ~~ee~elF~L~~ir~~~~L~el~~~~~avD~e-----~~~d~-~~~~d~~-d--~D-----e~~~l~sdld~~~~~y~~~ 456 (780)
T KOG1098|consen 391 EAEEQELFSLKTIRKSKELAELTKDTQAVDEE-----LSEDG-DSDIDES-D--ED-----EDDGLNSDLDEMELDYTER 456 (780)
T ss_pred hhhhhhHHHHHHHhcchhHHHHhcCCcCCChh-----hhccC-Ccccccc-c--cc-----cccccccchhhhHhhhhhh
Confidence 87788999999999999999999988743111 11101 1111111 1 11 1157889999999999999
Q ss_pred hCCChHHHHHHHH-hhhhhhcccCCCCccccccCCC-CCCCCCCCCcCCCCcccCCCCCCCChHHHHhhhhccchhhhhc
Q 003302 477 RGGSTMQRKRAKK-AYAQEDQLSEGDEDEDTMHTSY-DSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAV 554 (832)
Q Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~wF~~~~f~~~~ 554 (832)
+.+.+.++++++. ...+. ++|.|.++.++++... +...-+...+.+++++++++ ...++..++++||++|||++
T Consensus 457 ~~e~~~~~r~~~~~~~~~e-ee~~gl~e~d~de~~~ie~~~~e~~se~~~~~~~~~d-k~~~kegk~~~~f~~~if~~-- 532 (780)
T KOG1098|consen 457 RDESEMKKRAKKAEGQIEE-EEWSGLEEGDEDEKNAIEKNGREKKSENDELTVSFDD-KKGKKEGKARMWFEDDIFNN-- 532 (780)
T ss_pred hhHHHHHHHhhhhhhhhhh-hhhcCCccccchhhhhhhhccccccccccccccchhh-cccchhhhccccccCccccc--
Confidence 9999999998888 44444 7899854321111100 00011224456788888887 44466679999999999998
Q ss_pred cCCCCCCCCCCchhhhhhhhhccCCchHHhhhhccccCCCCCCCCCcCCCCCCceeecCCCCC-------CCCCCCCCcc
Q 003302 555 QNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGAD-------SSDDSSSDES 627 (832)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~feiv~~~~~~-------~~~~~~~~~~ 627 (832)
.+++++.++.+..... ....+.+. ....+. +....+..++..+|++|..... ++++....
T Consensus 533 ed~d~~~e~s~~~~~~-~~~~~~e~---l~~~d~-------~~d~~de~~~~~~E~~~~~s~se~~d~~~dsd~~~~~-- 599 (780)
T KOG1098|consen 533 EDADEGTEDSESSDAE-MKKKKKEK---LSKSDD-------DIDKSDEDEEERYEDLPNSSASESCDADIDSDSLKPV-- 599 (780)
T ss_pred cccccccccccchHHH-Hhhhhhhh---cCcccc-------cccccchhhhhhccccccccccccccccccccccCch--
Confidence 2444433222211111 01111000 000000 0011112234567777765321 11111111
Q ss_pred ccccccccHHHHHHHHHHh-hhhhhhHHhhhcccccCCCCCCCCchhHHHHHhhcCCCCCCCHHHHHHHHHHhhhhccCc
Q 003302 628 EDEEVDTKAEILACAKKML-RKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARP 706 (832)
Q Consensus 628 ~~~~~~~~ae~lala~~m~-~kK~r~dLiD~ayNRYaF~D~~LP~WF~dDE~kH~kp~~PiTKE~v~~~K~k~reinaRP 706 (832)
.++++ +|||+||||++|+ ++|+|+||||+|||||||||+|||+||++||++||+||.|||||+|++||+||+||||||
T Consensus 600 ~k~~~-lt~E~mal~~~~a~~kK~r~dliDea~NRyaf~dE~LP~WF~dDEk~h~~~~kPvtKe~v~a~rer~keiNARP 678 (780)
T KOG1098|consen 600 EKKRI-LTPEEMALGAQMARSKKARRDLIDEAWNRYAFNDEGLPDWFVDDEKQHYKKQKPVTKEEVAAYRERMKEINARP 678 (780)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccchHHHhhHHHhccCCCCCCHHHHHHHHHHHHHhcccc
Confidence 24554 9999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHhhCC-CCCCceEEEeeccccc--CCCCCc-c
Q 003302 707 AKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVP-KRPKKEYVVAKKGVQV--RAGKGK-V 782 (832)
Q Consensus 707 IKKVaEAKARKK~Ra~krLekakkKAe~I~e~~dmse~eKak~I~klykKa~~-kK~~~~yVVakkg~~~--kGvKGr-K 782 (832)
|||||||||||||||++|||+++|||++|+++.|||++||+++|++||++|.+ +|++++|||+++|..| +| ||+ |
T Consensus 679 iKKVaEAkARKkrra~kRLek~kKKAe~I~d~~d~te~eK~kei~klykkA~~k~K~k~~lVv~kkg~~grP~G-KGkyK 757 (780)
T KOG1098|consen 679 IKKVAEAKARKKRRAQKRLEKVKKKAELISDTSDITEREKAKEIKKLYKKATKKPKAKPTLVVAKKGLVGRPKG-KGKYK 757 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhccCCCCCceEEEecCCccCCcCC-CCcee
Confidence 99999999999999999999999999999999999999999999999999998 5888899999999544 66 999 9
Q ss_pred cccccccchhhhccC
Q 003302 783 LVDPRMKKDSRTHGS 797 (832)
Q Consensus 783 ~VD~RMKKD~Ra~kr 797 (832)
|||+|||||+||+++
T Consensus 758 ~VD~RmKkD~Ra~~a 772 (780)
T KOG1098|consen 758 MVDSRMKKDKRARKA 772 (780)
T ss_pred eechhhhhhHHHHhh
Confidence 999999999999996
|
|
| >PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=542.98 Aligned_cols=197 Identities=52% Similarity=0.850 Sum_probs=172.7
Q ss_pred CCCCceeecCCCCCCCCCCCC-----CccccccccccHHHHHHHHHHhhhhhhhHHhhhcccccCCCCC-CCCchhHHHH
Q 003302 604 VEGDFEIVPAPGADSSDDSSS-----DESEDEEVDTKAEILACAKKMLRKKQREQILDDAYNRYMFDDD-GLPDWFLEEE 677 (832)
Q Consensus 604 ~~~~feiv~~~~~~~~~~~~~-----~~~~~~~~~~~ae~lala~~m~~kK~r~dLiD~ayNRYaF~D~-~LP~WF~dDE 677 (832)
++++||+||.......+++.. +...+.+ .++||+||||++|+++|+|+||||+|||||||||+ |||+||++||
T Consensus 5 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ae~laLa~~m~~kk~r~dlID~~yNRyaf~D~d~LP~WF~eDE 83 (215)
T PF07780_consen 5 SDDEFEVVPEEEKDEEDDSDEDDEEDDSDDEDD-ELTAEALALATKMISKKTRRDLIDDSYNRYAFNDDDGLPDWFVEDE 83 (215)
T ss_pred hhchhhhcccccccccccchhcccccccccccc-ccCHHHHHHHHHHhhhhhHHHHHHhhccccccCCCCCCchhHHHHH
Confidence 456788888775322211111 1001222 48999999999999999999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhhhhccCchhhHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHhh
Q 003302 678 RRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSA 757 (832)
Q Consensus 678 ~kH~kp~~PiTKE~v~~~K~k~reinaRPIKKVaEAKARKK~Ra~krLekakkKAe~I~e~~dmse~eKak~I~klykKa 757 (832)
++||+|++|||+|+|++||++|++|||||||||+|||||||+|+++||++|++||++|++++||||+||+++|++||++|
T Consensus 84 ~kH~k~~~Pvtke~v~~~k~k~~einaRPIKKV~EAkaRKK~Ra~kklek~kkKa~~I~~~~d~se~eK~~~i~kl~kka 163 (215)
T PF07780_consen 84 KKHNKPQLPVTKEEVAEYKEKLREINARPIKKVAEAKARKKRRAAKKLEKAKKKAEAIADDEDMSEREKAKQIKKLYKKA 163 (215)
T ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCceEEEeecccc-----cCCCCCc-ccccccccchhhhccCcccc
Q 003302 758 VP--KRPKKEYVVAKKGVQ-----VRAGKGK-VLVDPRMKKDSRTHGSGKAR 801 (832)
Q Consensus 758 ~~--kK~~~~yVVakkg~~-----~kGvKGr-K~VD~RMKKD~Ra~kr~~kk 801 (832)
.+ ++++++||||++|.+ ++||+|+ ||||+|||||+||+||++++
T Consensus 164 ~~~~~kk~~~~VVakk~~~~~~~rp~Gvkg~~K~VD~RmKKD~Ra~kr~~kk 215 (215)
T PF07780_consen 164 KKKKKKKKVKYVVAKKGNRGKKGRPKGVKGRYKMVDPRMKKDKRAQKRKEKK 215 (215)
T ss_pred hccCCCCCcEEEecCCCCCCCCCCCCCCCCCeeeECchhhhHHHHHHHHhcC
Confidence 87 355569999997732 2999999 99999999999999998875
|
Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=366.77 Aligned_cols=211 Identities=37% Similarity=0.661 Sum_probs=196.7
Q ss_pred CCCccCCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC----CC----EEEE
Q 003302 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV----GS----LVLG 72 (832)
Q Consensus 1 mgk~k~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~----~~----~ViG 72 (832)
||+ .+|..+|-|||+||++|||+|++|||+||++.|++|..-.+|+||||+||+|+|+|++.+-. .+ +||+
T Consensus 1 MGk-tskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVa 79 (294)
T KOG1099|consen 1 MGK-TSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVA 79 (294)
T ss_pred CCC-ccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEE
Confidence 884 35678899999999999999999999999999999999899999999999999999987632 11 3999
Q ss_pred EeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC
Q 003302 73 LDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK 152 (832)
Q Consensus 73 VDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG 152 (832)
|||++|.||++|..+|+|||...|...|..+|.+.++ |+|+|||+|.+.|.+..|.|.|.+|++.+|..++.+|+||
T Consensus 80 VDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekA---dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 80 VDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKA---DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EecccCCccCceEEeecccCCHhHHHHHHHHhCCCCc---cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 9999999999999999999999999999999988666 9999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchh
Q 003302 153 GTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVK 215 (832)
Q Consensus 153 G~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~ 215 (832)
|+||.|+||+.+..-|-..|+.+|.+|.+.||.+||+.|-|.||||.+|-.|..+.|.+-.|.
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~ 219 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPL 219 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcc
Confidence 999999999999877778999999999999999999999999999999999999888885554
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=363.84 Aligned_cols=196 Identities=38% Similarity=0.678 Sum_probs=190.4
Q ss_pred CCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCce
Q 003302 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAV 85 (832)
Q Consensus 6 ~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~ 85 (832)
.+++.|.||+.|+..||||||+|||+||+++|.+|.+|++||||||+||||+|++++.++..+.|+|||+.||.++++|.
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~ 88 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVI 88 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCce
Confidence 67899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 86 SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 86 ~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
++++|||...+...|...+..++ +|+|+||++||++|.|..|++.+.+|+..++..|..+|+|||.|++|+|++.++
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~---~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAP---VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCC---cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99999999999999999988744 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 166 SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 166 ~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+.+++.++++|..|+++||.+||..|+|+|+||.+|+++
T Consensus 166 ~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 166 EDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred HHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 999999999999999999999999999999999999875
|
|
| >PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=350.22 Aligned_cols=159 Identities=42% Similarity=0.659 Sum_probs=141.1
Q ss_pred cccccccccCCCCccCCCceeeeccchhhhhcCCChhHhhcccceeeecCccccccccCCCChHHHHHhhhhhhhcCHHH
Q 003302 230 VLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQD 309 (832)
Q Consensus 230 ~~~~~~~k~~~~gy~~~~~~~~~~~~~~~f~~~~~p~~~l~~~~~i~f~~~~~~~~~~~~~tt~ei~~~c~Dlkvlgk~d 309 (832)
||+|++|||+|+||++|+|||||++||+|||+|+||+++|+++|+|+|++ ++..|.+||+||+||++||+|||||||+|
T Consensus 1 v~~p~kkKr~reGY~egd~tl~~~~~~~dFi~s~dpi~~L~~~~~i~fdd-~~~~i~~h~~TT~EIk~~c~DLKVLGk~d 79 (159)
T PF11861_consen 1 VFKPEKKKRKREGYEEGDYTLYKTISASDFIKSEDPIDLLGSANEIVFDD-ASKEILKHPLTTEEIKECCKDLKVLGKKD 79 (159)
T ss_pred CCCCCCCCCCCCCcCCCCceeeeeccHHHHhcCCcHHHHHHHcCeeeecc-hHHHHHcCCCCcHHHHHHHHHHHhcCHHH
Confidence 68999999999999999999999999999999999999999999999988 88889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003302 310 FKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGM 389 (832)
Q Consensus 310 ~~~llkwr~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ee~~~~~el~~l~~~~~~~~kr~kkk~~~~k~k~~~r~~~~m 389 (832)
|++|||||.+||+.+ +...+......++...+.++++++++++++|+++.+.+.++.+|++|+.+++++|.+.|++++|
T Consensus 80 ~k~LLKWR~kir~~~-~~~~~~~~~~~~~~~~e~~~~deee~~d~el~~~~e~~~~~~k~e~kk~~k~k~K~~~k~~~~m 158 (159)
T PF11861_consen 80 FKQLLKWRKKIRKEL-GKDKKEEEEEEEEEEEEVEEDDEEEEIDEELEELQEKELAELKREKKKENKRKQKKILKEQLKM 158 (159)
T ss_pred HHHHHHHHHHHHHHH-hHhhhcccccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998 4332222110111222237788899999999999999999999999999999999999999999
Q ss_pred c
Q 003302 390 Q 390 (832)
Q Consensus 390 ~ 390 (832)
+
T Consensus 159 ~ 159 (159)
T PF11861_consen 159 T 159 (159)
T ss_pred C
Confidence 6
|
Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ]. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=314.33 Aligned_cols=195 Identities=36% Similarity=0.613 Sum_probs=187.9
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVS 86 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~ 86 (832)
+|..|.|...||.+.||+|+||||+|||++|.||.|+.+|||+||+||+|+|++.+++.+++.|+||||.++.|++|+++
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~ 113 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATI 113 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCccc
Confidence 78899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEc-cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 87 LEQ-DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 87 i~g-DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
+++ |+|++.+...|...+++. .+|+|+||++||..|....||+..+.||..+|..|..+|.|+|.||||++.+..-
T Consensus 114 i~~~dvtdp~~~~ki~e~lp~r---~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 114 IQGNDVTDPETYRKIFEALPNR---PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred ccccccCCHHHHHHHHHhCCCC---cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 999 999999999999988774 4599999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 166 SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 166 ~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+.+...|+.+|..|+.+||-+||.+|+|.|+||..|++.
T Consensus 191 ~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 191 ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred HHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCc
Confidence 999999999999999999999999999999999999874
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=304.94 Aligned_cols=194 Identities=32% Similarity=0.517 Sum_probs=178.5
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVS 86 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~ 86 (832)
+++.|.||.+|+..+||+|++|||.+++.+|.++.++.+|||||||||+|++++++.+++.+.|+|||+++|.++++|.+
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~ 95 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDF 95 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEE
Confidence 67789999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+++|++++.+.+.+...+.. +.||+|+||++|++.+.+..+...+..++..+|..+.++|+|||+|++++|++.++.
T Consensus 96 i~~D~~~~~~~~~i~~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~ 172 (209)
T PRK11188 96 LQGDFRDELVLKALLERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD 172 (209)
T ss_pred EecCCCChHHHHHHHHHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence 99999998777666665544 667999999999988877777666666678899999999999999999999999999
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
.+++.+..+|..++++||.+||..|+|+|+||.||++
T Consensus 173 ~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 173 EYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999975
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=285.99 Aligned_cols=179 Identities=40% Similarity=0.669 Sum_probs=154.0
Q ss_pred chhHHHHHHHhhhhhcCCCCCC--CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHH
Q 003302 22 YRSRASWKLVQLDSKFSFLRSS--HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g--~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~ 99 (832)
||+||+|||.+++++|+++.++ .+|||||||||||+++++++....+.|+|||+.++.+++++.++++|+++..+...
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHh
Confidence 8999999999999999988765 89999999999999999999755689999999999989999999999999877776
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
+...+.. ..+.||+|+||++|+++|.+..+++.+..|+..+|..|..+|+|||+||+++|.......+++.+.++|..|
T Consensus 81 i~~~~~~-~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 81 IRKLLPE-SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp GGGSHGT-TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred hhhhccc-cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 6665542 125789999999999999999999999999999999999999999999999999887779999999999999
Q ss_pred EEecCCCCCCCCcceeEEEeec
Q 003302 180 EVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 180 ~~~KP~sSR~~SaEiyvVc~gf 201 (832)
.++||.+||..|+|+|+||.||
T Consensus 160 ~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 160 KIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp EEEE-TTSBTTCBEEEEESEEE
T ss_pred EEEECcCCCCCccEEEEEEcCC
Confidence 9999999999999999999998
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=238.37 Aligned_cols=188 Identities=41% Similarity=0.713 Sum_probs=167.2
Q ss_pred chHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEcc
Q 003302 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQD 90 (832)
Q Consensus 11 D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gD 90 (832)
|.||+.|++.+||+|++|+|.++..+|..+++|.+|||+|||||+++..++..+...+.|+|||++++...+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d 80 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGD 80 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEee
Confidence 68999999999999999999999999999999999999999999999999988766679999999997666789999999
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHH
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY 170 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~ 170 (832)
+++......+...+.. +.||+|+++++|+..|.|..++.....+...+|..+.++|+|||+|++.+|...++..++.
T Consensus 81 ~~~~~~~~~l~~~~~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 81 FTDEEVLNKIRERVGD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred CCChhHHHHHHHHhCC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence 9886655544444433 5689999999888778888887766666778899999999999999999999988899999
Q ss_pred HHHHcccceEEecCCCCCCCCcceeEEEeec
Q 003302 171 CLKQLFEKVEVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 171 ~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gf 201 (832)
.+...|..+.+.+|.+||..++|.|+||.+|
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 158 ELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred HHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 9999999999999999999999999999987
|
|
| >KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-16 Score=174.43 Aligned_cols=197 Identities=19% Similarity=0.311 Sum_probs=150.6
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCC-C-C----CC-----------EEEEEcCCcCHHHHHHHHhCCCCCE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFL-R-S----SH-----------AVLDLCAAPGGWMQVAVQRVPVGSL 69 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl-~-~----g~-----------~VLDLGcGPGg~sq~La~~~p~~~~ 69 (832)
+.|...| ..-+..-|..|||.|+..++..|.++ . | |. ..-|+|||||||+.++.++-.-+++
T Consensus 216 RtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AK 294 (845)
T KOG3673|consen 216 RTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAK 294 (845)
T ss_pred hhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccc
Confidence 3343333 33455668899999999999988853 1 1 11 2568999999999999887666778
Q ss_pred EEEEeCCCCCCC---------C-CceE-----EEccCCChhHHHHHHHHHhhcc-CCcccEEEeCCCCCCCCCchhHHhH
Q 003302 70 VLGLDLVPIAPI---------R-GAVS-----LEQDITKPECRARVKKVMEEHG-VRAFDLVLHDGSPNVGGAWAQEAMS 133 (832)
Q Consensus 70 ViGVDLsp~~~i---------~-~V~~-----i~gDIt~~~~~~~l~~~L~~~~-~~~FDlVlsDgapnv~g~w~~D~~~ 133 (832)
-+|+.|.--... + -..+ -.|||+++.....+...+...- -..+++.++||.+.|-|.-+....-
T Consensus 295 GFGfTL~G~nDFKLekF~aaS~e~FetfYG~k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEIL 374 (845)
T KOG3673|consen 295 GFGFTLAGKNDFKLEKFTAASQEFFETFYGTKDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEIL 374 (845)
T ss_pred cceeEeccCCccchhhhhhcCHHhhhccccccCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHH
Confidence 888887642210 0 0111 2579999988888877664322 1457999999999988877777666
Q ss_pred HhHHHHHHHHHHHhhcccCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 134 QNALVIDSVKLATQFLAPKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 134 q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+-.|.++.+-.|+.+|++||.|+||+|.-++ ...|+|+|..||+.|.++||.+||++++|+||||.|.+..
T Consensus 375 SKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~ 447 (845)
T KOG3673|consen 375 SKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE 447 (845)
T ss_pred HHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence 6778888888999999999999999886554 3678999999999999999999999999999999998764
|
|
| >KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=168.60 Aligned_cols=185 Identities=24% Similarity=0.315 Sum_probs=136.1
Q ss_pred CchhHHHHHHHhhhhhcCCCC-CCC--EEEEEcCCcCHHHHHHHHhCCC-------CCEEEEEeCCCCCC----------
Q 003302 21 GYRSRASWKLVQLDSKFSFLR-SSH--AVLDLCAAPGGWMQVAVQRVPV-------GSLVLGLDLVPIAP---------- 80 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~-~g~--~VLDLGcGPGg~sq~La~~~p~-------~~~ViGVDLsp~~~---------- 80 (832)
.+...||.||.+|...|.+.. ++. ..+.||-|||.|...+..++.. .-...+..|+|.-.
T Consensus 108 e~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~mi~D 187 (696)
T KOG3674|consen 108 ENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDMIID 187 (696)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCccceeeeccCccCcccccchHHHHhcc
Confidence 355689999999999999753 443 6899999999998776655421 11355667776320
Q ss_pred ---CC---CceEE----EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc
Q 003302 81 ---IR---GAVSL----EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA 150 (832)
Q Consensus 81 ---i~---~V~~i----~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk 150 (832)
|. .-.++ .|||.+......|...+. ..+.||+|++||+.++.|...-....-..|..+-+-.|+.+|+
T Consensus 188 Dr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~--~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~ 265 (696)
T KOG3674|consen 188 DRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVK--LAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLR 265 (696)
T ss_pred chhhhccccceeeCCCCCccHHHHHHHHHHHHHHH--hhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11222 577777665555555433 2488999999999998876433322223455566678999999
Q ss_pred cCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCC
Q 003302 151 PKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKI 207 (832)
Q Consensus 151 pGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~i 207 (832)
.||.||+|+|+-+. ...+|++|+..|..|+++||.+|+++++|+||||.||++..-+
T Consensus 266 ~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l 324 (696)
T KOG3674|consen 266 RGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL 324 (696)
T ss_pred cCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc
Confidence 99999999997653 5789999999999999999999999999999999999876543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=153.58 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=136.3
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
|..+....+|||||||.|..+..++++.+. +.|+||++++.. ++ .++.++++|+....
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--------- 108 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--------- 108 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh---------
Confidence 333455789999999999999999999874 899999999621 22 35889999998743
Q ss_pred hhccCCcccEEEeCCCCCCCCCc-hhHHh------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAW-AQEAM------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w-~~D~~------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
......+||+|+|||+.+-.+.. +.+.. .........++.|..+|+|||+|.+ |+|+....+++..|.++--
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELLKSYNL 187 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHHHhcCC
Confidence 12223568999999976644433 22111 1113357889999999999999999 9999999999999999766
Q ss_pred ceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 178 ~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
.+..+.++++|...+...|+.++-+++.. ++.+++|++|+.+-
T Consensus 188 ~~k~i~~V~p~~~k~A~~vLv~~~k~~~~-~l~~~ppLii~~e~ 230 (248)
T COG4123 188 EPKRIQFVYPKIGKAANRVLVEAIKGGKS-GLKVLPPLIIHDED 230 (248)
T ss_pred CceEEEEecCCCCCcceEEEEEEecCCCC-CceecCCEEEECCC
Confidence 67777799999999999999999999874 78999999999875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-12 Score=136.72 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||||||||.++..++...++.+.|+|+|+++ |. ...+|.++++|+++++.. +
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d-- 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP--------D-- 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---------T--
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------C--
Confidence 36789999999999999999999888788999999997 32 245899999999987532 2
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
++||+|++-.. .++... ...+|++++++|+|||+|++.-|..+....+...+..||..|
T Consensus 115 -~sfD~v~~~fg-----lrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 115 -NSFDAVTCSFG-----LRNFPD------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp -T-EEEEEEES------GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred -CceeEEEHHhh-----HHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 78899998642 222211 246889999999999999987776555344445555555543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=127.95 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=93.2
Q ss_pred chhHHHH--HHH-hhhhhcC--CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-----CC----CCCCceEE
Q 003302 22 YRSRASW--KLV-QLDSKFS--FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-----IA----PIRGAVSL 87 (832)
Q Consensus 22 yrsRaaf--KLi-qi~~kf~--fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-----~~----~i~~V~~i 87 (832)
||.+..| ||. -|..-.. .+.++.+|||||||||.|+++++..++..+.|+|||+++ +. ..+||.++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I 186 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI 186 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEE
Confidence 7766655 454 2222222 268999999999999999999999998778999999996 21 23689999
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC-----C
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR-----S 162 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr-----s 162 (832)
++|++.+.... .+ ...||+|++|.+. +++. ..++..|.++|+|||+|++++-. .
T Consensus 187 ~~Da~~p~~y~----~~----~~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g 245 (293)
T PTZ00146 187 IEDARYPQKYR----ML----VPMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDST 245 (293)
T ss_pred ECCccChhhhh----cc----cCCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccC
Confidence 99998643211 11 1467999999741 2221 12334688999999999995431 1
Q ss_pred CCHHHH----HHHHHHc-ccceEEec
Q 003302 163 QDYSSV----LYCLKQL-FEKVEVDK 183 (832)
Q Consensus 163 ~d~~~l----l~~L~~~-F~~V~~~K 183 (832)
.....+ +..|... |..++.+.
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 122222 3445554 87666553
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=139.44 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||||+++.+++..++..+.|+|+|+++- ..+.+|.++++|++..... +. ..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~------~~-~~ 322 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL------KP-QW 322 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc------cc-cc
Confidence 357899999999999999999999877789999999972 1345688899998764210 00 01
Q ss_pred CCcccEEEeCCCCCCCCCch--hH--------H-hHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWA--QE--------A-MSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~--~D--------~-~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+. ++ . .....++..+|..|.++|+|||+||+. +++..+...+.+.+..
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 15689999998765434322 11 1 112245678899999999999999954 4444555566677776
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 403 ~ 403 (434)
T PRK14901 403 H 403 (434)
T ss_pred C
Confidence 4
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=138.69 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||||+++.+++..++..+.|+|||+++.. .+.+|.++++|++.... .+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~------~~~---- 318 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE------KFA---- 318 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc------hhc----
Confidence 578899999999999999999988667899999999631 34568899999876420 111
Q ss_pred CcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEE---EEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVT---KVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~---KVFrs~d~~~ll~~L~~~ 175 (832)
+.||+|++|+++...|.+.. +......++..+|..|.++|+|||+||+ +++...+...+.+.+..+
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 56899999987543343211 1112234567789999999999999995 445555555556667663
Q ss_pred --ccceEEe
Q 003302 176 --FEKVEVD 182 (832)
Q Consensus 176 --F~~V~~~ 182 (832)
|..+.+.
T Consensus 399 ~~~~~~~~~ 407 (444)
T PRK14902 399 PEFELVPLQ 407 (444)
T ss_pred CCcEEeccc
Confidence 5444443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=129.47 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||+|||||-++..+++..+ .+.|+|+|+++ |. ...+|.++++|+..++ +++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--------f~D--- 117 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--------FPD--- 117 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--------CCC---
Confidence 3799999999999999999999998 88999999997 42 1234889999999876 233
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
.+||+|++.- |..+... ...+|+++.++|+|||.|+|.-|..+....+...+..|
T Consensus 118 ~sFD~vt~~f-----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 118 NSFDAVTISF-----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred CccCEEEeee-----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 7889999863 2222221 35789999999999999999877766544444444433
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-11 Score=128.11 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||||||||+++.+++..++..+.|+|+|+++-. .+.+|.++++|++.... .
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-------~---- 137 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-------A---- 137 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-------h----
Confidence 3678999999999999999999998777899999999721 24567888888765321 0
Q ss_pred CCcccEEEeCCCCCCCCCchhH----------HhH-HhHHHHHHHHHHHhhcccCcEEEEEEcC--C-CCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE----------AMS-QNALVIDSVKLATQFLAPKGTFVTKVFR--S-QDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D----------~~~-q~~L~~~aLk~A~~~LkpGG~fV~KVFr--s-~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.|..+ ... ...++..+|..|..+|+|||+||..+.. . .+-..+.++++.
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 1458999999887655544222 111 1245667899999999999999976432 2 222334455554
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 218 ~ 218 (264)
T TIGR00446 218 R 218 (264)
T ss_pred C
Confidence 3
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=117.78 Aligned_cols=119 Identities=26% Similarity=0.377 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++.+++...+ ...|+++|+++.. .+.++.++++|+.... . ..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~---~~ 97 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------P---DG 97 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------C---TT
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------c---cc
Confidence 567999999999999999999876 5689999999732 3445888999987632 1 26
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
.||+|+||++...++. ....+....+..|.++|+|||+|++-+-+...+..+ +..+|..+.++
T Consensus 98 ~fD~Iv~NPP~~~~~~------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~ 160 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGD------DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVV 160 (170)
T ss_dssp CEEEEEE---SBTTSH------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEE
T ss_pred ceeEEEEccchhcccc------cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEE
Confidence 8899999986433321 112344667888999999999998844444555544 78889888876
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.5e-11 Score=107.89 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------CCCCceEEEccC-CChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------PIRGAVSLEQDI-TKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------~i~~V~~i~gDI-t~~~~~~~l~~~L~~~~ 108 (832)
|+.+|||||||+|.++..+++..+ ++.|+|||+++. . ..+++.++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------------~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD------------F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT------------T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc------------c
Confidence 578999999999999999999544 679999999972 1 236899999999 2211 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...||+|++.+ .. ..+.... .-...++..+.+.|+|||+|++..
T Consensus 68 ~~~~D~v~~~~-~~--~~~~~~~----~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSG-FT--LHFLLPL----DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECS-GS--GGGCCHH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECC-Cc--cccccch----hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 25789999986 11 1111111 223567888999999999999853
|
... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-10 Score=131.14 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||||+.+.+++..++..+.|+|+|+++-. .+.++.++++|.+.+.. .+.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~------~~~--- 305 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE------YVQ--- 305 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh------hhh---
Confidence 3678999999999999999999998777899999999721 34467888999876421 111
Q ss_pred CCcccEEEeCCCCCCCCCchh--H--------Hh-HHhHHHHHHHHHHHhhcccCcEEEEEEcC---CCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQ--E--------AM-SQNALVIDSVKLATQFLAPKGTFVTKVFR---SQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~--D--------~~-~q~~L~~~aLk~A~~~LkpGG~fV~KVFr---s~d~~~ll~~L~~ 174 (832)
+.||+|++|+++...|.+.. + .. ....++..+|..+.++|+|||++|+.+.. ..+...+.+.|..
T Consensus 306 -~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 306 -DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred -ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 56899999998765554321 1 11 12246678899999999999999975543 2333444455544
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=126.08 Aligned_cols=125 Identities=27% Similarity=0.300 Sum_probs=89.0
Q ss_pred hcCchhHHHHHHHhhhhhcC-------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEE
Q 003302 19 EHGYRSRASWKLVQLDSKFS-------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSL 87 (832)
Q Consensus 19 e~gyrsRaafKLiqi~~kf~-------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i 87 (832)
..+.+|||+|||.++...|. ++.+|++||||||+||||+++|+++ +..|+|||..+|.+ .++|+++
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~~~L~~~~~V~h~ 257 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMAQSLMDTGQVEHL 257 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcCHhhhCCCCEEEE
Confidence 34678999999999965554 5689999999999999999999987 56999999999864 4679999
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC--cEE--EEEEcCCC
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK--GTF--VTKVFRSQ 163 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG--G~f--V~KVFrs~ 163 (832)
.+|...... . .+.||+|+||+.. .+ ..++.++..+|..| ..+ .+|.-...
T Consensus 258 ~~d~fr~~p---------~--~~~vDwvVcDmve------~P---------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 258 RADGFKFRP---------P--RKNVDWLVCDMVE------KP---------ARVAELMAQWLVNGWCREAIFNLKLPMKK 311 (357)
T ss_pred eccCcccCC---------C--CCCCCEEEEeccc------CH---------HHHHHHHHHHHhcCcccEEEEEEEcCCCC
Confidence 888765321 0 2667999999751 12 13344566677655 233 34554445
Q ss_pred CHHHHHHHH
Q 003302 164 DYSSVLYCL 172 (832)
Q Consensus 164 d~~~ll~~L 172 (832)
+|..+...+
T Consensus 312 r~~~v~~~l 320 (357)
T PRK11760 312 RYEEVRQCL 320 (357)
T ss_pred CHHHHHHHH
Confidence 676654433
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=128.69 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C--C--CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P--I--RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~--i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|.+|||||||||+++.+++..++. +.|+|+|+++.. . . .++.++++|++.+.. .+. .
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~------~~~---~ 311 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ------WWD---G 311 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh------hcc---c
Confidence 357899999999999999999998863 799999999731 0 1 136788999886421 111 1
Q ss_pred CcccEEEeCCCCCCCCCc--------hhH---HhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAW--------AQE---AMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w--------~~D---~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~~ 175 (832)
++||+|++|+++...|.+ ... ......++..+|..|..+|+|||+||+. +++..+...+.+.+..+
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 568999999976654432 111 1112345678899999999999999964 45666666666666653
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=118.16 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|.+|||+|||||+|+.+++..++ .+.|+|+|+++. ...++|.++.+|++.+.... .+. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~----~l~----~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA----HVV----E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh----hcc----c
Confidence 57899999999999999999999987 679999999972 12468999999998642111 111 4
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC------CC---CHHHHHHHHHHc-ccceE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR------SQ---DYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr------s~---d~~~ll~~L~~~-F~~V~ 180 (832)
.||+|+|+++. .| . ...+|..+.++|+|||+|++.+.- .. .+...+..+... |..+.
T Consensus 141 ~~D~i~~d~~~----p~---~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 141 KVDVIYQDVAQ----PN---Q------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred cCCEEEECCCC----hh---H------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57999998641 11 1 123567889999999999985431 11 122344555543 76666
Q ss_pred Ee
Q 003302 181 VD 182 (832)
Q Consensus 181 ~~ 182 (832)
..
T Consensus 208 ~~ 209 (226)
T PRK04266 208 VV 209 (226)
T ss_pred EE
Confidence 54
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=129.52 Aligned_cols=123 Identities=23% Similarity=0.278 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||+|||||+++.+++..++..+.|+|+|+++-. .+.+|.++++|+++.. ..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---------~~--- 316 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---------PE--- 316 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---------cC---
Confidence 578999999999999999999988767899999999721 2456888899987632 11
Q ss_pred CcccEEEeCCCCCCCCCch--------h--HHhH-HhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWA--------Q--EAMS-QNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~--------~--D~~~-q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~~L~~~ 175 (832)
..||+|++|+++...|.|. . .... ...++..+|..+.++|+|||+||+.+..- .+-..+.+.|..+
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 5689999998765545432 1 1111 12345678999999999999999865433 2333344666654
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=129.73 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++|.+|||+||||||.|.+++..++..+.|+++|+++-. .+.+|.+.+.|.+.+. ..+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~------~~~~---- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG------AALP---- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh------hhch----
Confidence 689999999999999999999999878899999999631 3567777788876532 1121
Q ss_pred CcccEEEeCCCCCCCCCchhHH----------h-HHhHHHHHHHHHHHhhcccCcEEEEEEc--CC-CCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEA----------M-SQNALVIDSVKLATQFLAPKGTFVTKVF--RS-QDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~----------~-~q~~L~~~aLk~A~~~LkpGG~fV~KVF--rs-~d~~~ll~~L~~~ 175 (832)
+.||.|+.|+++...|.+..++ . ....++..+|..|..+|+|||++|.++. .+ ++-..+.|++..+
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 5689999999877655543221 1 2235678889999999999999987443 22 2333455777765
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=126.48 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||+|||||+++.+++..++ ++.|+|+|+++.. .+. .+++..+|...+... ..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~------~~-- 306 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW------AE-- 306 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc------cc--
Confidence 35789999999999999999999987 7899999999721 122 123356666543210 11
Q ss_pred cCCcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLK 173 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~ 173 (832)
.+.||+|++|+++...|.+.. +......++..+|..|.++|+|||+||+.+. ...+...+.+.+.
T Consensus 307 -~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 307 -NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred -ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 156899999988766554211 1122335677889999999999999997543 3345555556666
Q ss_pred Hc
Q 003302 174 QL 175 (832)
Q Consensus 174 ~~ 175 (832)
++
T Consensus 386 ~~ 387 (426)
T TIGR00563 386 EH 387 (426)
T ss_pred hC
Confidence 53
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=118.17 Aligned_cols=108 Identities=14% Similarity=0.224 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.|+..++...++.+.|+|||+++. . .++++.++++|+.+.. +.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~--- 111 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--------FD--- 111 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--------CC---
Confidence 467899999999999999999998876789999999962 1 2457889999987642 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL 169 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll 169 (832)
.+.||+|+++... .|..+ ...+|..+.++|+|||+|++..+.......+.
T Consensus 112 ~~~fD~V~~~~~l----~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 161 (231)
T TIGR02752 112 DNSFDYVTIGFGL----RNVPD-------YMQVLREMYRVVKPGGKVVCLETSQPTIPGFK 161 (231)
T ss_pred CCCccEEEEeccc----ccCCC-------HHHHHHHHHHHcCcCeEEEEEECCCCCChHHH
Confidence 1678999987532 12222 13467788999999999998555444444333
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=121.72 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=93.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C---CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P---IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|||||||+|.++..++...| ...|+|||++++. . ..++.++.+|+.+. +.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~---------~~--- 295 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---------VE--- 295 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc---------CC---
Confidence 45899999999999999999876 6799999999742 1 12567788887542 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR 188 (832)
...||+|+||+++..+..+. + ......+..+.++|+|||.|++..-+.-.|. ..|.++|..++++
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~-~-----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~---~~L~~~fg~~~~v------ 360 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALT-D-----NVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNCTTI------ 360 (378)
T ss_pred CCCEEEEEECcCcccCccCC-H-----HHHHHHHHHHHHhcccCCEEEEEEecCcCHH---HHHHHHcCCceEE------
Confidence 14789999998765433221 1 1234677889999999999999654544554 4566678777664
Q ss_pred CCCcceeEEEeeccCC
Q 003302 189 SASAEIYLLGIKYKAP 204 (832)
Q Consensus 189 ~~SaEiyvVc~gfk~p 204 (832)
.+...|+|.+..+..
T Consensus 361 -a~~~kf~vl~a~k~~ 375 (378)
T PRK15001 361 -ATNNKFVVLKAVKLG 375 (378)
T ss_pred -ccCCCEEEEEEEeCC
Confidence 444578888876643
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-10 Score=123.54 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=92.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++|.+|||+||||||-|.++++.|+. +..|+++|+++-. .+.++..++.|....... ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~------~~~- 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL------LPG- 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc------ccc-
Confidence 368999999999999999999999986 4556999999721 355677778776643211 111
Q ss_pred cCCcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLK 173 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~ 173 (832)
...||.|+.|+++...|.+.. +......++..+|..|..+|+|||.+|.+ ++...+-..+.+.+.
T Consensus 227 -~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~ 305 (355)
T COG0144 227 -GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLE 305 (355)
T ss_pred -cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHH
Confidence 025899999998877665422 22233466788999999999999999964 344556566668887
Q ss_pred Hc
Q 003302 174 QL 175 (832)
Q Consensus 174 ~~ 175 (832)
.+
T Consensus 306 ~~ 307 (355)
T COG0144 306 RH 307 (355)
T ss_pred hC
Confidence 75
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-10 Score=120.74 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------C------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------P------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+.++.+|||||||||.++..++..+++.+.|+|||+++ |. + .+++.++++|+.+.+ +.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--------~~ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--------FD 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC--------CC
Confidence 46788999999999999999998876677999999997 31 1 236889999998754 22
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
. ++||+|++.... ++..+ ...+|..+.++|+|||+|++..|....
T Consensus 143 ~---~sfD~V~~~~~l----~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 143 D---CYFDAITMGYGL----RNVVD-------RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred C---CCEeEEEEeccc----ccCCC-------HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 2 678999986532 22222 245788999999999999997776544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=108.88 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=75.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|||+|||+|.++..++...+ .+.|+|||+++. ..+.++.++++|+.+.. . .+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~---~~~ 109 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------H---EEQ 109 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------c---cCC
Confidence 78999999999999998886654 679999999972 13457899999987631 1 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
||+|++++. .. ....+..+.++|+|||.|++ .+++.....+.....+
T Consensus 110 fD~I~s~~~------~~---------~~~~~~~~~~~LkpgG~lvi-~~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 110 FDVITSRAL------AS---------LNVLLELTLNLLKVGGYFLA-YKGKKYLDEIEEAKRK 156 (181)
T ss_pred ccEEEehhh------hC---------HHHHHHHHHHhcCCCCEEEE-EcCCCcHHHHHHHHHh
Confidence 899999741 01 12345567899999999998 4566666666666555
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-10 Score=108.67 Aligned_cols=100 Identities=17% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+.+|||||||+|.++..++....+++.|+|||+++- ..++++.++++|++++... + .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~------~---~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE------L---E- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC------S---S-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc------c---C-
Confidence 45789999999999999999966555889999999972 1456899999999984310 0 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+++++. .|..+ ...+++.+.++|++||.|++..+.
T Consensus 72 ~~~D~I~~~~~l----~~~~~-------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL----HHFPD-------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG----GGTSH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch----hhccC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 578999999753 22222 235677899999999999986665
|
... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-10 Score=114.97 Aligned_cols=119 Identities=21% Similarity=0.321 Sum_probs=92.2
Q ss_pred HhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccC
Q 003302 18 KEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDI 91 (832)
Q Consensus 18 ke~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDI 91 (832)
+..+-|+|-+..|+-.. . +.+..+|+|||||||.-+..|+++.| .+.|+|||-|+ |. .+|+++|..+||
T Consensus 10 ~F~~eRtRPa~dLla~V---p-~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl 84 (257)
T COG4106 10 QFEDERTRPARDLLARV---P-LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADL 84 (257)
T ss_pred HHHHhccCcHHHHHhhC---C-ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccH
Confidence 44567888888877421 1 24567899999999999999999998 68999999998 43 579999999999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.+.. +...+|+|++|.+ ..|..||.. .|......|.|||++.+.+-...+
T Consensus 85 ~~w~------------p~~~~dllfaNAv----lqWlpdH~~-------ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 85 RTWK------------PEQPTDLLFANAV----LQWLPDHPE-------LLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhcC------------CCCccchhhhhhh----hhhccccHH-------HHHHHHHhhCCCceEEEECCCccC
Confidence 8753 1256799999875 468888865 334456789999999997765543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=116.05 Aligned_cols=113 Identities=23% Similarity=0.331 Sum_probs=81.5
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---CCCCceEEEccCCChhH
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---~i~~V~~i~gDIt~~~~ 96 (832)
..|.+..+.|+.. +. +.++.+|||||||+|.++..++...| ++.|+|||+++ |. ...++.++++|+.+..
T Consensus 12 ~~~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~- 85 (255)
T PRK14103 12 DHRGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDVRDWK- 85 (255)
T ss_pred hHhhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-
Confidence 3444555555543 22 35678999999999999999999875 67999999998 32 2346888999986531
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
. .+.||+|+|+... +|..+. ..++..+.++|+|||+|++.++.
T Consensus 86 --------~---~~~fD~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 --------P---KPDTDVVVSNAAL----QWVPEH-------ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------C---CCCceEEEEehhh----hhCCCH-------HHHHHHHHHhCCCCcEEEEEcCC
Confidence 1 1678999998642 343332 35677889999999999986654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=110.77 Aligned_cols=140 Identities=22% Similarity=0.238 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++..++ .+.|+|+|+++.. ...++.++++|+.... . .
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~---~ 173 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------P---G 173 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------C---C
Confidence 4567899999999999999999875 5799999999721 1346889999986531 1 1
Q ss_pred CcccEEEeCCCCCCCCCch---h-----HH-------hHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWA---Q-----EA-------MSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~---~-----D~-------~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
+.||+|++|++....+.+. . ++ .........++..+.++|+|||+|++.+ .......+...|..
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~ 252 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAA 252 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHh
Confidence 5789999997533222111 0 00 0122345677888999999999999854 22223445555554
Q ss_pred -cccceEEecCCCCCCCCcceeEEE
Q 003302 175 -LFEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 175 -~F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
.|..|.+.++.+.+ ++++++
T Consensus 253 ~gf~~v~~~~d~~~~----~r~~~~ 273 (275)
T PRK09328 253 AGFADVETRKDLAGR----DRVVLG 273 (275)
T ss_pred CCCceeEEecCCCCC----ceEEEE
Confidence 37788888777655 356654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=111.21 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=90.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|||+|||+|.++..++...+ ...|+|+|+++.. .+.++.++++|+.+. +. .+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---------~~---~~ 153 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---------LP---GG 153 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---------Cc---CC
Confidence 345899999999999999998876 5699999999621 244688899998652 11 16
Q ss_pred cccEEEeCCCCCCCCCch---hHHh------------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH-
Q 003302 111 AFDLVLHDGSPNVGGAWA---QEAM------------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ- 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~---~D~~------------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~- 174 (832)
.||+|++|++....+.+. .+.. .........+..+.++|+|||+|++.+ .......+...|.+
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~~~~~~l~~~ 232 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGEAVRALFEAA 232 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHHHHHHHHHhC
Confidence 789999998643222110 0000 011223567888999999999999854 22334556666665
Q ss_pred cccceEEecCCCCC
Q 003302 175 LFEKVEVDKPAASR 188 (832)
Q Consensus 175 ~F~~V~~~KP~sSR 188 (832)
-|..|.+.+...++
T Consensus 233 gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 233 GFADVETRKDLAGK 246 (251)
T ss_pred CCCceEEEeCCCCC
Confidence 38888888776655
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=115.79 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=80.4
Q ss_pred HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHH
Q 003302 30 LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECR 97 (832)
Q Consensus 30 Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~ 97 (832)
+-.+.++++ |+||++|||+|||.|+.+.++++.. +..|+||++|+.+ .++ +|+++..|..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 333444444 6899999999999999999999997 4699999999732 244 6888888888743
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+.||.|+|-|++..-|..+.+ .-+..+..+|+|||.+++-.+.
T Consensus 136 ------------e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 ------------EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ------------cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEec
Confidence 558999999976654443332 3456789999999999985443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=107.73 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++..++..++|+|||+++- . . ..++.++.+|+.+.. ..+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l------~~~--- 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL------FTI--- 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH------hhc---
Confidence 467899999999999999999888766789999999962 1 2 246788888875421 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKPAA 186 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP~s 186 (832)
...||+|++++.. . .+..++..+.++|+|||+||+.+.+......++..|..+ | .++++....
T Consensus 109 -~~~~D~V~~~~~~----~----------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~ 172 (198)
T PRK00377 109 -NEKFDRIFIGGGS----E----------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVII 172 (198)
T ss_pred -CCCCCEEEECCCc----c----------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEeh
Confidence 1568999996521 0 023467788999999999998555555556667777654 5 677666656
Q ss_pred CCC
Q 003302 187 SRS 189 (832)
Q Consensus 187 SR~ 189 (832)
+|.
T Consensus 173 ~~~ 175 (198)
T PRK00377 173 AKG 175 (198)
T ss_pred hhc
Confidence 554
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-09 Score=97.53 Aligned_cols=96 Identities=24% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++..+|. +.|+|+|+++.. .++++.++.+|+..... ..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 85 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE------DS---- 85 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh------hh----
Confidence 456789999999999999999998874 799999999621 24568888888764210 01
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|++.+.+. ....++..+.++|+|||+|++.+.
T Consensus 86 ~~~~D~v~~~~~~~--------------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGG--------------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcch--------------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 14689999976321 123567889999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=110.51 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
++.+|||||||+|.++..++.. +..|+|+|+++ +. ..+.+.++++|+.+.+ +. .+.||+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~--------~~---~~~fD~V 107 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP--------LA---TATFDLA 107 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------CC---CCcEEEE
Confidence 4678999999999999988764 46999999997 21 2334567889987643 11 1578999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
+++.+. .|..+. ..+|..+.++|+|||.|++..|....+..+...+.
T Consensus 108 ~s~~~l----~~~~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 108 WSNLAV----QWCGNL-------STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred EECchh----hhcCCH-------HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 998642 243332 35678899999999999998887777666554443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=106.85 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+++++.+|||+|||+|.++..++...+ ++.|+|||+++. ..+.++.++++|+.+.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~----------~ 109 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG----------Q 109 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC----------C
Confidence 4566789999999999999999988665 679999999972 13456889999987632 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.++||+|+++... . ....+..+.++|+|||+|++-.+.
T Consensus 110 --~~~fDlV~~~~~~------~---------~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 --EEKFDVVTSRAVA------S---------LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --CCCccEEEEcccc------C---------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 1578999997421 0 134567789999999999985544
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=111.99 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||||||+|.++..++...| ++.|+|||+++. . .++++.++++|+.+.. . ...||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~---------~---~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ---------P---PQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC---------C---CCCcc
Confidence 35678999999999999999998875 579999999972 1 3567889999987531 1 15789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+|+++.+. +|..+. ..+|..+.++|+|||+|++.+.
T Consensus 96 ~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASL----QWLPDH-------LELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccCh----hhCCCH-------HHHHHHHHHhcCCCcEEEEECC
Confidence 99998653 344332 3567888999999999998653
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=116.63 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=98.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++|.+|||+||+|||-+.++|..|...+.|+|.|.+... .+.|.++...|....+. ..+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-----~~~~---- 310 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-----KEFP---- 310 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-----cccC----
Confidence 689999999999999999999999999999999987521 24556666777664321 1121
Q ss_pred CcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~~ 175 (832)
++||.||.|+++...|.-+. +-....+|+...|-.|..++++||++|.+ |....+-..+-|+|..+
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 47899999987654333221 22233477788888999999999999964 44555656667888874
Q ss_pred ccceEEecCCCCCCCC
Q 003302 176 FEKVEVDKPAASRSAS 191 (832)
Q Consensus 176 F~~V~~~KP~sSR~~S 191 (832)
-.+++. |..++.+.
T Consensus 391 -p~~kL~-p~~~~iG~ 404 (460)
T KOG1122|consen 391 -PEVKLV-PTGLDIGG 404 (460)
T ss_pred -CceEec-cccccCCC
Confidence 344443 66666544
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=113.69 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
..+|||||||+|.++..++...| ...|+|||+++.. .+ .+.++.+|+... + .+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~---------~----~~~ 261 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD---------I----KGR 261 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc---------c----CCC
Confidence 34799999999999999998876 5689999999732 12 245667776541 1 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSAS 191 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~S 191 (832)
||+|+||+++..+..... ......+..+.++|+|||.|++...+.-.|..+ +..+|..++++ ..
T Consensus 262 fDlIvsNPPFH~g~~~~~------~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~---l~~~Fg~~~~l-------a~ 325 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL---LDETFGSHEVL-------AQ 325 (342)
T ss_pred ccEEEECCCccCCccccH------HHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH---HHHHcCCeEEE-------Ee
Confidence 899999987554332222 223567889999999999999855554556654 55678877765 12
Q ss_pred cceeEEEeeccCC
Q 003302 192 AEIYLLGIKYKAP 204 (832)
Q Consensus 192 aEiyvVc~gfk~p 204 (832)
...|.|....++.
T Consensus 326 ~~~f~v~~a~~~~ 338 (342)
T PRK09489 326 TGRFKVYRAIMTR 338 (342)
T ss_pred CCCEEEEEEEccC
Confidence 2357777666553
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=103.70 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++...+ ++.|+|||+++- . .+.++.++++|+... +.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---------~~---- 95 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---------LP---- 95 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---------cC----
Confidence 4778999999999999999998865 579999999972 1 235678888876321 11
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
..||+|++++.. +. ....+..+.++|+|||+|++......+...+...+.++ |..+.+
T Consensus 96 ~~~D~v~~~~~~---~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 96 GKADAIFIGGSG---GN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred cCCCEEEECCCc---cC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 467999997631 10 12345678899999999998655555666777777654 655544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=101.90 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||||||+|.++..++...+ .|+|+|+++.. ...++.++++|+.+.. .+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-------------~~~ 82 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-------------RGK 82 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-------------CCc
Confidence 457899999999999999998642 89999999731 1124777888876521 156
Q ss_pred ccEEEeCCCCCCCC------CchhHHh----HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 112 FDLVLHDGSPNVGG------AWAQEAM----SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 112 FDlVlsDgapnv~g------~w~~D~~----~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
||+|+++++..... .|..-.+ ....+....|..+.++|+|||+|++..........++..|.+.
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~ 156 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER 156 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence 89999997532111 1100000 0123356778899999999999998655544467777777765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=109.47 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+|||||||+|.++..++...+ +..|+|||+++.. ...++.++++|+.+.. ...+ .+.||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~~~----~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PTAL----RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----chhc----CCCEeE
Confidence 45899999999999999998876 4689999999732 1234678899987531 1111 156899
Q ss_pred EEeCCCCCCCCCch---hHHh------------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 115 VLHDGSPNVGGAWA---QEAM------------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 115 VlsDgapnv~g~w~---~D~~------------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
|++|++....+.+. .+.. .....+..++..+..+|+|||+|++. +.......++..|..+
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~ 231 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARA 231 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHC
Confidence 99998643322211 1100 11233567788899999999999984 5555667788877754
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=107.44 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCC-----CEEEEEeCCC-CC----------CC---CCceEEEccCCChhHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVG-----SLVLGLDLVP-IA----------PI---RGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~-----~~ViGVDLsp-~~----------~i---~~V~~i~gDIt~~~~~~~l~~ 102 (832)
++++|||+|||||-++..+..+.+.. ++|+.+|++| |. ++ +.+.++.+|..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp------- 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP------- 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-------
Confidence 57999999999999999999998743 7999999998 32 22 23788999998865
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
+++ ..||..+.-+ |..+.-+ ...+|+.|+++|+|||+|.|..|.......+.|+.++++-.|
T Consensus 173 -Fdd---~s~D~yTiaf-----GIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 173 -FDD---DSFDAYTIAF-----GIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred -CCC---CcceeEEEec-----ceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 333 5679988754 3322222 357899999999999999998898776678889999997666
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=98.65 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
|.+|||+|||+|.++..++... ...|+|+|++|.. .+ .++.++++|+++.. ..+.. +
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~~---~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP------EPLPD---G 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH------HTCTT---T
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch------hhccC---c
Confidence 5689999999999999999885 5799999999731 12 45899999987632 11222 7
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.||+|++|++... .+ ........+....+..+.++|+|||.|++.
T Consensus 70 ~~D~Iv~npP~~~--~~-~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 70 KFDLIVTNPPYGP--RS-GDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -EEEEEE--STTS--BT-T----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEECCCCcc--cc-ccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7899999986431 11 111111124456788999999999999984
|
... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=109.19 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=93.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+|||||||+|.++..++...+ +..|+|||+++.. .+. ++.++++|+... +.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---------~~~---~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---------LAG---QK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---------CcC---CC
Confidence 6899999999999999998876 5799999999721 233 388999998652 111 36
Q ss_pred ccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH--c
Q 003302 112 FDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ--L 175 (832)
Q Consensus 112 FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~--~ 175 (832)
||+|++|++....... ..++. .........+..+..+|+|||+|++.+-... ...+..++.. .
T Consensus 183 fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q-~~~~~~~~~~~~~ 261 (284)
T TIGR00536 183 IDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ-QKSLKELLRIKFT 261 (284)
T ss_pred ccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH-HHHHHHHHHhcCC
Confidence 8999999753211110 00100 1123456778899999999999998765433 2445555552 4
Q ss_pred ccceEEecCCCCCCCCcceeEEE
Q 003302 176 FEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 176 F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
|..+.+++..+.+. +++++
T Consensus 262 ~~~~~~~~D~~g~~----R~~~~ 280 (284)
T TIGR00536 262 WYDVENGRDLNGKE----RVVLG 280 (284)
T ss_pred CceeEEecCCCCCc----eEEEE
Confidence 78888888877763 66665
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=106.28 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=85.2
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------CCCCceEEEccCCCh
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------PIRGAVSLEQDITKP 94 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~ 94 (832)
+....+..|++....... ..+.+|||||||+|.++..++...+ ...|+|+|+++.. ..+++.++++|+...
T Consensus 15 ~q~~~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~ 92 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL 92 (240)
T ss_pred HHHHHHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC
Confidence 344555666665444331 2347899999999999999999876 5689999999731 124688899998764
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS 167 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ 167 (832)
.. . .+.||+|+++... .|..+ ...+|..+.++|+|||+|++.++.......
T Consensus 93 ~~--------~---~~~fD~vi~~~~l----~~~~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~ 143 (240)
T TIGR02072 93 PL--------E---DSSFDLIVSNLAL----QWCDD-------LSQALSELARVLKPGGLLAFSTFGPGTLHE 143 (240)
T ss_pred CC--------C---CCceeEEEEhhhh----hhccC-------HHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence 31 1 1578999998642 22222 235678899999999999998876655443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=107.59 Aligned_cols=130 Identities=23% Similarity=0.263 Sum_probs=93.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+..|||||||.|.++..+++..| ...|+-||++.+. .+.+..++.+|+.... .+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-------------~~k 224 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-------------EGK 224 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-------------ccc
Confidence 34899999999999999999987 7899999999642 2334456777776632 157
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSAS 191 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~S 191 (832)
||+|+|||++..|-.-.. .+....+..|.+.|++||.+-+-+-+...|.. .|..+|..|.++. .
T Consensus 225 fd~IisNPPfh~G~~v~~------~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~---~L~~~Fg~v~~la-------~ 288 (300)
T COG2813 225 FDLIISNPPFHAGKAVVH------SLAQEIIAAAARHLKPGGELWIVANRHLPYEK---KLKELFGNVEVLA-------K 288 (300)
T ss_pred ccEEEeCCCccCCcchhH------HHHHHHHHHHHHhhccCCEEEEEEcCCCChHH---HHHHhcCCEEEEE-------e
Confidence 899999998764432222 22346778899999999999886666666664 5777898888762 2
Q ss_pred cceeEEEeecc
Q 003302 192 AEIYLLGIKYK 202 (832)
Q Consensus 192 aEiyvVc~gfk 202 (832)
-..|.|.+..+
T Consensus 289 ~~gf~Vl~a~k 299 (300)
T COG2813 289 NGGFKVLRAKK 299 (300)
T ss_pred CCCEEEEEEec
Confidence 23566655543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=112.34 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++...+ ++.|+|+|+++.. . -.++.++++|+.... +.. .+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--------l~~--~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--------MPS--EG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--------ccc--CC
Confidence 4567999999999999998887765 6799999999721 1 125889999986532 110 14
Q ss_pred cccEEEeCCCCCCCCCchh-------HHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-
Q 003302 111 AFDLVLHDGSPNVGGAWAQ-------EAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL- 175 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~-------D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~- 175 (832)
.||+|+||++....+.... ++. .........+..+.++|+|||++++.+-. .....+..++...
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~G 397 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENG 397 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCC
Confidence 6899999985322211110 000 11123457778888999999999885533 3345666667654
Q ss_pred ccceEEecCCCCCCCCcceeEEEee
Q 003302 176 FEKVEVDKPAASRSASAEIYLLGIK 200 (832)
Q Consensus 176 F~~V~~~KP~sSR~~SaEiyvVc~g 200 (832)
|..+.+.+..+.+ +++|+++.
T Consensus 398 f~~v~v~kDl~G~----dR~v~~~~ 418 (423)
T PRK14966 398 FSGVETLPDLAGL----DRVTLGKY 418 (423)
T ss_pred CcEEEEEEcCCCC----cEEEEEEE
Confidence 8888998888877 47887653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-09 Score=110.83 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++..++..+.|+|||+++. . .++++.++++|+..+. +..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--------~~~-- 144 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--------VAD-- 144 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--------CCC--
Confidence 468899999999999999888888776779999999872 1 2457888899987642 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|+++...+ |..+. ..++..++++|+|||+|++.
T Consensus 145 -~~fD~Vi~~~v~~----~~~d~-------~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 145 -NSVDVIISNCVIN----LSPDK-------ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -CceeEEEEcCccc----CCCCH-------HHHHHHHHHHcCCCcEEEEE
Confidence 5789999986432 22221 35678899999999999985
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-09 Score=106.60 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccC-CChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDI-TKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDI-t~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++...| ++.|+|||+++- . .++++.++++|+ ... ...+..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l------~~~~~~-- 109 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL------LDMFPD-- 109 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH------HHHcCc--
Confidence 3678999999999999999998875 568999999972 1 346789999998 321 111222
Q ss_pred CCcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+++.+. .|... +..........|..+.++|+|||+|++..
T Consensus 110 -~~~D~V~~~~~~----p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 110 -GSLDRIYLNFPD----PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred -cccceEEEECCC----CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 678999997531 12111 00000112456788999999999999843
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=108.99 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|.+|||||||.|+++.++++.. ++.|+||++|+-. .++ .|.+..+|..+..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------------ 125 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------------ 125 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------------
Confidence 6899999999999999999999986 5699999999631 233 4788888887632
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+||.|+|-++...-|.-+ ....+..+.++|+|||.|++..+.
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~---------~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKN---------YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGG---------HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred --CCCCEEEEEechhhcChhH---------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 4789999987643222111 134567889999999999986543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=113.84 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|+++..++... ++.|+|||+++.. .+ ++|.++++|+.+.+ +..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~~-- 184 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--------FED-- 184 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--------CCC--
Confidence 567899999999999999999875 4699999999731 12 46899999998743 112
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||+|++..+. .+..+ ...++..+.++|+|||+|++..+
T Consensus 185 -~~FD~V~s~~~~----~h~~d-------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 185 -GQFDLVWSMESG----EHMPD-------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -CCccEEEECCch----hccCC-------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 678999997542 22222 13567789999999999998654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-09 Score=93.07 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
||||||+|.++..++.+ .+..|+|+|+++- . ...++.+.++|+++++. .+ ++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--------~~---~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPF--------PD---NSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS---------T---T-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcc--------cc---ccccccccc
Confidence 89999999999999988 4679999999973 1 23456689999998652 22 788999998
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.... |. .-...+++.+.++|+|||+|++
T Consensus 68 ~~~~----~~-------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLH----HL-------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGG----GS-------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccee----ec-------cCHHHHHHHHHHHcCcCeEEeC
Confidence 6421 22 1235678899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=102.85 Aligned_cols=116 Identities=23% Similarity=0.210 Sum_probs=87.0
Q ss_pred hcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEE-ccC
Q 003302 19 EHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLE-QDI 91 (832)
Q Consensus 19 e~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~-gDI 91 (832)
++.|.||+++||....+.|.+..+|.+|||+|+.||||+++|+++- ..+|+|||....+ .-|+|+.+. .|+
T Consensus 56 ~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~ 133 (245)
T COG1189 56 EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV 133 (245)
T ss_pred CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCCh
Confidence 5789999999999999999999999999999999999999999973 4699999998743 345665543 355
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..... ..+. +..|+++||.++ .++. .+|-.+..+|.|||-++..|
T Consensus 134 r~l~~-----~~~~----~~~d~~v~DvSF-----------ISL~---~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 134 RYLTP-----EDFT----EKPDLIVIDVSF-----------ISLK---LILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred hhCCH-----HHcc----cCCCeEEEEeeh-----------hhHH---HHHHHHHHhcCCCceEEEEe
Confidence 54321 1122 345999999763 2222 34455678899999988754
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=110.04 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+|||+|||+|+++..++.. +..|+|+|+++ |. .+.++.++++|+++.+.. .
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~-- 246 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------S-- 246 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------c--
Confidence 468899999999999998876653 56899999997 21 245578889999875421 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+.||+|++|++......... .....+...+|..+.++|+|||++++.+....+..
T Consensus 247 -~~~D~Iv~dPPyg~~~~~~~--~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 247 -ESVDAIATDPPYGRSTTAAG--DGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred -CCCCEEEECCCCcCcccccC--CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 57899999976432111111 11124456788999999999999998554433433
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=95.27 Aligned_cols=120 Identities=21% Similarity=0.309 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC--ceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG--AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~--V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||+|||+|.++..++.. ++.|+|+|+++-. ...+ +.++++|+.+. +..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 88 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG- 88 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence 56789999999999999999887 4699999999721 1223 77888887652 111
Q ss_pred cCCcccEEEeCCCCCCCCC-ch-hHHh--------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGGA-WA-QEAM--------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~-w~-~D~~--------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..||+|+++++....+. +. .+.. .....+..++..+.++|+|||+|++.+........+...+..+
T Consensus 89 --~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~ 164 (188)
T PRK14968 89 --DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKL 164 (188)
T ss_pred --cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHC
Confidence 36899999875332110 00 0000 0122345678899999999999998665545556677777765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=108.31 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|||+++ +. . .+++.++++|+.+... +.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-------~~--- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-------HL--- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-------hc---
Confidence 45679999999999999999886 46899999997 21 1 2467889998876321 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++.... .|..+ ...+|..+.++|+|||+|++.++..
T Consensus 110 ~~~fD~V~~~~vl----~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 110 ETPVDLILFHAVL----EWVAD-------PKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCCEEEehhHH----HhhCC-------HHHHHHHHHHHcCCCeEEEEEEECc
Confidence 1678999987532 12222 1356788999999999999854443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-08 Score=103.91 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|.|+..++..+++.+.|+|+|+++.. ..+++.++++|+.... +. .
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~---~ 85 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--------FP---D 85 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--------CC---C
Confidence 4678899999999999999999988657899999999731 1346888889987643 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|++..... +..+ ...++..+.++|+|||+|++..
T Consensus 86 ~~~D~v~~~~~~~----~~~~-------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQ----HLED-------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCceEEEEechhh----ccCC-------HHHHHHHHHHHhcCCcEEEEEe
Confidence 6789999975321 1111 2346778899999999999854
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-08 Score=99.29 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++...+ ++.|+|||+++.. .+.++.++++|+... + ..+.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-----~-~~~~--- 107 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-----L-AQLA--- 107 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-----H-hhCC---
Confidence 35788999999999999999987655 5799999999721 235688888887541 1 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKP 184 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP 184 (832)
..+|.|++++. .. ...++..+.++|+|||.|++..........+...+..+ +..+++++.
T Consensus 108 -~~~d~v~~~~~----~~-----------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 108 -PAPDRVCIEGG----RP-----------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred -CCCCEEEEECC----cC-----------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 33578877642 00 13456788899999999998654433333344444433 334444443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=102.62 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||+|||+|.++.++++. +..|+|||+++.. .+.++.++.+|+.+.. + .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--------~----~~ 94 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--------F----DG 94 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--------c----CC
Confidence 4579999999999999999975 4699999999721 2356778888876532 1 15
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.||+|+|..... |... .....++..+.++|+|||.|++
T Consensus 95 ~fD~I~~~~~~~----~~~~-----~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 95 EYDFILSTVVLM----FLEA-----KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CcCEEEEecchh----hCCH-----HHHHHHHHHHHHHcCCCcEEEE
Confidence 689999976421 2111 1234677889999999999765
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=103.89 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
...+|||||||+|.++..++...| ...|+|||+++. . .+.+|.++++|+.+.. ...+.. +
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-----~~~~~~---~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-----DKFFPD---G 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-----HhhCCC---C
Confidence 567999999999999999998876 679999999962 1 3468999999987532 111221 4
Q ss_pred cccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 111 AFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
.||.|+++.+. .|... +....-+....+..+.++|+|||.|++.+.....+..++..|..
T Consensus 87 ~~d~v~~~~pd----pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 87 SLSKVFLNFPD----PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred ceeEEEEECCC----cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 68999998532 23211 00000112456788999999999998854333223334445544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=109.76 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=91.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++|..|||+||||||.+.+++..|+..+.|+++|+++-. .+.++.++..|.+.... ....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~------~~~~-- 154 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP------KKPE-- 154 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH------HHHT--
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc------cccc--
Confidence 3688999999999999999999999988999999999621 34567777777665321 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhH-----------HhHHhHHHHHHHHHHHhhc----ccCcEEEEEE---cCCCCHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE-----------AMSQNALVIDSVKLATQFL----APKGTFVTKV---FRSQDYSSVLY 170 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D-----------~~~q~~L~~~aLk~A~~~L----kpGG~fV~KV---Frs~d~~~ll~ 170 (832)
..||.|+.|+++...|.+..+ ......++..+|..|.++| +|||++|..+ +..++...+-+
T Consensus 155 -~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~ 233 (283)
T PF01189_consen 155 -SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEK 233 (283)
T ss_dssp -TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHH
T ss_pred -cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHH
Confidence 358999999987665544221 1122356788899999999 9999999754 44556555666
Q ss_pred HHHHc
Q 003302 171 CLKQL 175 (832)
Q Consensus 171 ~L~~~ 175 (832)
.++++
T Consensus 234 fl~~~ 238 (283)
T PF01189_consen 234 FLKRH 238 (283)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 67664
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-08 Score=100.61 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=82.5
Q ss_pred HHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC--CCceEEEccCCChhHH
Q 003302 28 WKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI--RGAVSLEQDITKPECR 97 (832)
Q Consensus 28 fKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i--~~V~~i~gDIt~~~~~ 97 (832)
..|+....... +.++.+|||+|||+|.++..++.. + .+.|+|||+++.. .. .++.++++|+...
T Consensus 23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--- 96 (223)
T PRK14967 23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--- 96 (223)
T ss_pred HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---
Confidence 34444443333 467789999999999999988875 3 3589999999721 01 2467778887642
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCC-----------chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGA-----------WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~-----------w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+.. ..||+|++|++...... |... .....++..++..+.++|+|||.|++..-...+..
T Consensus 97 ------~~~---~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~ 166 (223)
T PRK14967 97 ------VEF---RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG-PDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE 166 (223)
T ss_pred ------ccC---CCeeEEEECCCCCCCCcccccccChhHhhhCC-CcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH
Confidence 111 57899999974221100 1100 01123456778889999999999997332223556
Q ss_pred HHHHHHHH
Q 003302 167 SVLYCLKQ 174 (832)
Q Consensus 167 ~ll~~L~~ 174 (832)
.++..+..
T Consensus 167 ~~~~~l~~ 174 (223)
T PRK14967 167 RTLTRLSE 174 (223)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=107.41 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||||||+|+++..++... ++.|+|||+++.. ...+|.++++|++..+ +. .+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~--------~~---~~ 116 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD--------FP---EN 116 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC--------CC---CC
Confidence 4678899999999999999888764 4699999999721 1246888999987633 11 16
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+||+|++..+.. ++.. .-...+|+.+.++|+|||+|++..+
T Consensus 117 ~FD~V~s~~~l~---h~~~------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAIL---HLSY------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHH---hCCH------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999854211 1111 1134678899999999999998655
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-09 Score=100.49 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+.++.+|||+|||+|.++..++.. +..|+|+|+++. .....+.+...+..... .. .+.||+|+|.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FP---DGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHHTTSEEEEEECHTHH--------CH---SSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhhhhhhhhhhhhhhhh--------cc---ccchhhHhhH
Confidence 567889999999999999999765 349999999972 21133333333333321 11 2788999998
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
... .|..+ ...+|..+.++|+|||+|++.++...
T Consensus 86 ~~l----~~~~d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 86 DVL----EHLPD-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSG----GGSSH-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHH----hhccc-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 642 23332 34678889999999999999877654
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=109.47 Aligned_cols=109 Identities=26% Similarity=0.326 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCC
Q 003302 25 RASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDIT 92 (832)
Q Consensus 25 RaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt 92 (832)
|+.++.-.+...+..+ .|.+|||||||+|.++..++...+ ..|+|||+++.. ...+|.++.+|+.
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e 182 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE 182 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH
Confidence 3444433333333333 578999999999999999888732 379999999731 1236888888887
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.+. .+.||+|+|.+... |..+ ....|+.+.+.|+|||.||+..
T Consensus 183 ~lp~------------~~~FD~V~s~~vl~----H~~d-------p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 183 QLPA------------LKAFDTVFSMGVLY----HRRS-------PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred HCCC------------cCCcCEEEECChhh----ccCC-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 6431 16789999976421 2222 2356788999999999999864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-08 Score=102.71 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCC-CC--------C---CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVP-IA--------P---IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp-~~--------~---i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.++.+|||||||+|.++..+++..+ +++.|+|||+++ |. . ..++.++++|+.+..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------
Confidence 46788999999999999999988753 478999999986 21 1 235788999987642
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...+|+|++..+. +|..+. -...++..+.++|+|||.|++.-
T Consensus 120 --~~~~d~v~~~~~l----~~~~~~-----~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 --IKNASMVILNFTL----QFLPPE-----DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred --CCCCCEEeeecch----hhCCHH-----HHHHHHHHHHHhcCCCeEEEEee
Confidence 1346999987542 122111 12467889999999999999853
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-08 Score=105.14 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCC--CEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVG--SLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~--~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+..+|||+|||+|.++..++..++.. ..|+|||+++.. ..+++.++++|+.+.+ +.. ++|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp--------~~~---~sf 152 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP--------FAD---QSL 152 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC--------CcC---Cce
Confidence 345789999999999999998876532 479999999721 3578899999988743 112 678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|+|++..+|. .+..+.++|+|||+|++.++.+..
T Consensus 153 D~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 153 DAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred eEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999865421 123567899999999985544433
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=103.71 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++.+++...+..++|+|||+++- . .+.++.++++|+.... . .
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~---------~--~ 143 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW---------E--P 143 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC---------c--c
Confidence 468899999999999999999998776778999999962 1 2457889999987531 0 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...||+|++++++. . +...+.+.|+|||+|++-+
T Consensus 144 ~~~fD~Ii~~~~~~----~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 144 LAPYDRIYVTAAGP----K-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCCCEEEEcCCcc----c-------------ccHHHHHhcCcCcEEEEEE
Confidence 15789999986421 0 1123567899999999843
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-08 Score=103.95 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
..++.+|||+|||+|.++..++.. + ...|+|||+++.. .+. .+.++.+++.. ..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----------~~-- 222 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----------PI-- 222 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----------cc--
Confidence 357899999999999999888764 3 4589999999732 121 23344444221 01
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~ 181 (832)
.+.||+|+++... +. +..++..+.++|+|||+|++.-+.......+...+.+.|..+.+
T Consensus 223 -~~~fDlVvan~~~--------~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~ 281 (288)
T TIGR00406 223 -EGKADVIVANILA--------EV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEI 281 (288)
T ss_pred -CCCceEEEEecCH--------HH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeE
Confidence 1578999998521 11 23466788999999999999877666667777777776655544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-08 Score=112.02 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=88.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|||||||+|.++..++...| ++.|+|||+++.. .+ .+|.++++|+... +.. +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---------~~~---~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---------IEK---Q 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---------CcC---C
Confidence 46899999999999999988876 5799999999721 12 3577888887541 111 5
Q ss_pred cccEEEeCCCCCCCCCch---------hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 111 AFDLVLHDGSPNVGGAWA---------QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~---------~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
.||+|+||++. +...+. .++. ........++..+..+|+|||+|++.+-.. ....+..++..
T Consensus 206 ~fDlIvsNPPY-i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-q~~~v~~~~~~ 283 (506)
T PRK01544 206 KFDFIVSNPPY-ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-QEEAVTQIFLD 283 (506)
T ss_pred CccEEEECCCC-CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-hHHHHHHHHHh
Confidence 68999999742 221110 0110 012334567788899999999999865333 33455555554
Q ss_pred -cccceEEecCCCCCC
Q 003302 175 -LFEKVEVDKPAASRS 189 (832)
Q Consensus 175 -~F~~V~~~KP~sSR~ 189 (832)
.|..+.+.+..+.+.
T Consensus 284 ~g~~~~~~~~D~~g~~ 299 (506)
T PRK01544 284 HGYNIESVYKDLQGHS 299 (506)
T ss_pred cCCCceEEEecCCCCc
Confidence 377788888888774
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-08 Score=107.29 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++.. ++.|+|||+++- . + ..+|.++++|+.+.. +.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--------~~--- 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--------DE--- 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--------hc---
Confidence 35779999999999999988864 569999999962 1 1 136788888876532 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|+|... ..++.. ...+|..+.++|+|||.|++.++..
T Consensus 196 ~~~FD~Vi~~~v--------LeHv~d---~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 196 GRKFDAVLSLEV--------IEHVAN---PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCCCCEEEEhhH--------HHhcCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 167899999642 122111 2356778899999999999976543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=103.06 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++..++..++|+|||+++- . .+.++.++++|..... . .
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~--------~---~ 142 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY--------E---E 142 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--------C---c
Confidence 468999999999999999999998877789999999962 1 2457899999987532 0 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.++||+|+++++. ... ...+.+.|+|||+|++-
T Consensus 143 ~~~fD~I~~~~~~----~~~-------------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAG----PDI-------------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCc----ccc-------------hHHHHHhhCCCcEEEEE
Confidence 2678999998641 011 11345689999999983
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=90.34 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=60.5
Q ss_pred EEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCC-CC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 46 VLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVP-IA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|||||||+|.++..+....+ +...++|||+++ +. .-+.+.++++|+++... .. ++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~--------~~---~~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF--------SD---GKFD 69 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH--------HS---SSEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc--------cC---CCee
Confidence 79999999999999998873 237999999997 21 12478999999988531 11 6889
Q ss_pred EEEeCCC-CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc
Q 003302 114 LVLHDGS-PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG 153 (832)
Q Consensus 114 lVlsDga-pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG 153 (832)
+|++.+. .. ++. ...+..++..+.++|+|||
T Consensus 70 ~v~~~~~~~~--------~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 70 LVVCSGLSLH--------HLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEE-TTGGG--------GSS-HHHHHHHHHHHHHTEEEEE
T ss_pred EEEEcCCccC--------CCC-HHHHHHHHHHHHHHhCCCC
Confidence 9999653 21 111 1223567888999999998
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=105.93 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC--CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API--RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+|.+|||||||+|+|+..++. +....|++||+++. +.+ .++.++++|+.+. +.. +..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-----l~~-~~~- 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-----LRT-YRD- 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-----HHH-HHh-
Confidence 3578999999999999887664 23459999999962 123 2578999998653 111 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLKQ 174 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~~ 174 (832)
..++||+|++|++...... ...+....-....+..|..+|+|||.|++....+. +...+..++..
T Consensus 290 ~~~~fDlVilDPP~f~~~k--~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENK--SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred cCCCCCEEEECCCCCCCCh--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 1157899999986433221 11111112234566789999999999997543322 33445555443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-08 Score=102.52 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=50.0
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
-|++|+++||..+...|.+..++.+|||+|||||+|++.+++. + ...|+|||+++
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~ 108 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGY 108 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCH
Confidence 4999999999999999987678899999999999999999986 3 46899999998
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-08 Score=105.24 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||||||+|.++..++...+ ++.|+|||+++.. .+ .++.++++|+.+. +..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---------~~~--- 187 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---------LPG--- 187 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---------cCC---
Confidence 456899999999999999998876 5799999999621 23 3588899998642 111
Q ss_pred CcccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
..||+|++|++....+.. ..++. ....+....+..+.++|+|||+|++.+-.. ...+...+..
T Consensus 188 ~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~--~~~v~~~~~~ 264 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS--MEALEEAYPD 264 (284)
T ss_pred CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHHh
Confidence 468999999753221111 00110 112345677889999999999999876532 2344444443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=101.39 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.++.+|||||||+|.++..++..+ .+++.|+|||+++ |. .. .+|.++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----------
Confidence 5678899999999999998888754 3478999999997 32 12 26889999987632
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
...||+|+++... ++..+ .....++..+.++|+|||.|++.
T Consensus 123 --~~~~D~vv~~~~l----~~l~~-----~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 --IENASMVVLNFTL----QFLEP-----SERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred --CCCCCEEehhhHH----HhCCH-----HHHHHHHHHHHHhcCCCCEEEEE
Confidence 1446999986431 11111 11246778899999999999884
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-08 Score=108.71 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCC--CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIR--GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|+++..++... ++.|+|||+++.. ... ++.+..+|+.+. . +.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-----------~---~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-----------N---GQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----------C---CC
Confidence 4688999999999999999998875 4689999999721 112 356666665431 1 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+|++.+.....+.. .....+..+.++|+|||.|++..+.
T Consensus 229 fD~Ivs~~~~ehvg~~---------~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMFEHVGPK---------NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCchhhCChH---------HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 8999997643221111 1235677899999999999986543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=101.69 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------C--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------P--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||.|.++..++...| .+.|++||++|.. + .+++.++++|+... +...
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~---------l~~~- 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY---------IAVH- 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH---------HHhC-
Confidence 4567899999999999999988876 6799999998721 1 25688889987642 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHHcccc-eEEe
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQLFEK-VEVD 182 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~~F~~-V~~~ 182 (832)
..+||+|++|+... .+ ...+.. ....+..+.++|+|||+|++-++.. ..+..++..+++.|.. +.++
T Consensus 134 ~~~yD~I~~D~~~~-~~--~~~~l~----t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 134 RHSTDVILVDGFDG-EG--IIDALC----TQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLEL 202 (262)
T ss_pred CCCCCEEEEeCCCC-CC--CccccC----cHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEE
Confidence 15789999996211 11 111111 2466778999999999999866543 3467778888999975 4444
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=101.70 Aligned_cols=156 Identities=24% Similarity=0.309 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCC------cCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAA------PGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcG------PGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..++||+|||| || +.+|.+.+|.++.++-.|+.....-.++ .+.+|.++..+ ...||+
T Consensus 60 P~nMrVlHlGAgSdkGvaPG--t~VLrqwlP~~ailvDnDi~d~vSDa~~-~~~~Dc~t~~~------------~~k~Dl 124 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPG--TAVLRQWLPEDAILVDNDIRDYVSDADQ-SIVGDCRTYMP------------PDKFDL 124 (299)
T ss_dssp -TT-EEEEES---TTSB-HH--HHHHHHHS-TT-EEEEEESS--B-SSSE-EEES-GGGEEE------------SS-EEE
T ss_pred ccCcEEEEecccccCCcCCc--hHHHHHhCCCCcEEEecchhhhccccCC-ceeccccccCC------------CCcccE
Confidence 457899999975 56 4789999999999999999986544443 46788877532 167799
Q ss_pred EEeCCC----CCCCCC-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCC
Q 003302 115 VLHDGS----PNVGGA-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRS 189 (832)
Q Consensus 115 VlsDga----pnv~g~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~ 189 (832)
|+||+- -++.+. -..+.+ ..-++..+.+-|+-||.+++|+..... +.-++.|-++|.-++++ ..+-..
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~f-----F~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~Lyel~~~F~~wt~F-cT~VNt 197 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGF-----FTYLCGFIKEKLALGGSVAIKITEHSW-NAQLYELMGYFSWWTCF-CTAVNT 197 (299)
T ss_dssp EEE----TTS-SS-S------TH-----HHHHHHHHHHHEEEEEEEEEEE-SSS---HHHHHHHTTEEEEEEE-EEGGGT
T ss_pred EEEecccccccccccccCCcccc-----HHHHHHHHHhhhhcCceEEEEeecccc-cHHHHHHHhhcccEEEE-ecccCc
Confidence 999973 111121 122222 223456678899999999999976554 77788899999999987 346677
Q ss_pred CCcceeEEEeeccCC----CCCCCCccchhhhc
Q 003302 190 ASAEIYLLGIKYKAP----AKIDPRLLDVKYLF 218 (832)
Q Consensus 190 ~SaEiyvVc~gfk~p----~~id~~~ldp~~vf 218 (832)
+|||.|++|.+|.+. ..||...+...|+|
T Consensus 198 SSSEaFLigiNYLg~~~~~~~IdG~~mHAnYif 230 (299)
T PF06460_consen 198 SSSEAFLIGINYLGKFSEGEIIDGNVMHANYIF 230 (299)
T ss_dssp TSS-EEEEEEEE-SS---SS---HHHHHHHHHH
T ss_pred cccceeEEeeeccCccccccccchHHHHHHHHH
Confidence 899999999999986 34677777778888
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.1e-08 Score=105.42 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=67.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+|.+|||+|||+|.++..++... ...|+|||+++. . ...++.++.+++.+.. .
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp----------~-- 185 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH----------E-- 185 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC----------C--
Confidence 457899999999999988887653 247999999982 1 1234666777765432 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|+|.+... |..+ ...+|+.+.++|+|||.||+..+
T Consensus 186 ~~~FD~V~s~gvL~----H~~d-------p~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 LYAFDTVFSMGVLY----HRKS-------PLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCcCEEEEcchhh----ccCC-------HHHHHHHHHHhcCCCCEEEEEEE
Confidence 14689999987421 2222 23577889999999999998643
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-08 Score=98.70 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC-------CC--CceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP-------IR--GAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~-------i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+|||+|||+|.++..|+.. +..|+|||+++. .. .. .+.+.++|+.... +. ..|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~--------~~----~~f 95 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA--------LN----EDY 95 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc--------cc----CCC
Confidence 468999999999999999975 469999999972 10 11 2556666765422 11 468
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+|++..... +... ......+..+.++|+|||+|++-.
T Consensus 96 D~I~~~~~~~----~~~~-----~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFM----FLQA-----GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CEEEEecccc----cCCH-----HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999976432 1111 123456788999999999976533
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=97.03 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=81.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++|++|||.|.++..|+.++ ..++++|+++. ...++|.++++|+.... +.+.||+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------------P~~~FDL 109 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------------PEGRFDL 109 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------------SS-EEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC------------CCCCeeE
Confidence 579999999999999999985 48999999963 35689999999997742 3488999
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---------CCHHHHHHHHHHcccceEEec
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---------QDYSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---------~d~~~ll~~L~~~F~~V~~~K 183 (832)
|+.....++ .+. ...+..++..+...|.|||+||+-.++. ..-..++.+|+..|.+|..+.
T Consensus 110 IV~SEVlYY-----L~~---~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~ 179 (201)
T PF05401_consen 110 IVLSEVLYY-----LDD---AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVE 179 (201)
T ss_dssp EEEES-GGG-----SSS---HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred EEEehHhHc-----CCC---HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEE
Confidence 998753221 111 1223456778889999999999987764 233467788999999988763
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-08 Score=99.32 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||+|||+|.++..++...+..+.++|+|+++.. ...++.++.+|+.... +. .+.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~---~~~ 106 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP--------FE---DNS 106 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC--------CC---CCc
Confidence 367899999999999999999988754799999998621 1235788888887643 11 156
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
||+|++.... .+..+ ...+++.+..+|+|||+|++..+..
T Consensus 107 ~D~i~~~~~~----~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 107 FDAVTIAFGL----RNVTD-------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEEeeee----CCccc-------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 8999986432 11111 2356788999999999999865543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-08 Score=114.13 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------C--CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------P--IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||+|||+|.++..++...| ++.|+|+|+++. . . ..++.++++|+.+++ ..+.. ++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp------~~fed---eS 487 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS------SSFEK---ES 487 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc------cccCC---CC
Confidence 578999999999999988888776 679999999972 1 1 124677888886532 11222 67
Q ss_pred ccEEEeCCCCCCCCCchhHHh------HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAM------SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~------~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|+++.... |..+.. .....+..+|+.+.++|+|||.|++.
T Consensus 488 FDvVVsn~vLH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 488 VDTIVYSSILH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EEEEEEchHHH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 89999875321 111000 00123467888999999999999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-08 Score=98.96 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++.++++.++..+.|+|||+++- . .+. ++.++.+|+.... .
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~---------~-- 138 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL---------E-- 138 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC---------c--
Confidence 357889999999999999999998876779999999972 1 122 4788899987531 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..++||+|+++++.. +.. ..+.+.|+|||+|++-+
T Consensus 139 ~~~~fD~Ii~~~~~~----~~~-------------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAAS----TIP-------------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcc----hhh-------------HHHHHhcCcCcEEEEEE
Confidence 115789999986521 111 23568899999998854
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-08 Score=112.80 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|+++..++... ++.|+|||+++. . .. .++.++++|+.... +..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--------~~~--- 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--------YPD--- 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--------CCC---
Confidence 4678899999999999999998875 569999999962 1 11 35788999988743 111
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||+|+|.++. .|..+. ..++..+.++|+|||+|++..+
T Consensus 331 ~~fD~I~s~~~l----~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTI----LHIQDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcc----cccCCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 578999997642 222222 3567889999999999998654
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-08 Score=105.50 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
++||.+|||||||||+-+..+.+... ..+.|++.|+++.. +.+++.+...|++..+... +. ...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~-~~-~~~ 230 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIY-LK-DGN 230 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccc-cc-cCc
Confidence 47999999999999999855555442 24599999999631 3345555566665543211 00 000
Q ss_pred hccCCcccEEEeCCCCCCCCC-----------chhHH-hHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHH
Q 003302 106 EHGVRAFDLVLHDGSPNVGGA-----------WAQEA-MSQNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLY 170 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~-----------w~~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~ 170 (832)
......||-|+||.++...|. |.... .....|+..+|..++++|++||++|.++-.. ++..-+-.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHH
Confidence 112257899999987654332 22222 2223667888999999999999999866433 23334456
Q ss_pred HHHHcccceEE
Q 003302 171 CLKQLFEKVEV 181 (832)
Q Consensus 171 ~L~~~F~~V~~ 181 (832)
+|+.++..+.+
T Consensus 311 ~L~~~~~~~~l 321 (375)
T KOG2198|consen 311 ALQKVGGAVEL 321 (375)
T ss_pred HHHHhcCcccc
Confidence 67766655443
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=99.49 Aligned_cols=128 Identities=21% Similarity=0.292 Sum_probs=86.0
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+|||||||+|..+..++...| .+.|+|+|+++-+ .+.++.++++|+... +. ++||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---------~~----~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---------LR----GKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc---------cC----Ccee
Confidence 799999999999999999987 5799999999721 223456667776653 11 5789
Q ss_pred EEEeCCCCCCCCC-c--h-----hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc--c
Q 003302 114 LVLHDGSPNVGGA-W--A-----QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL--F 176 (832)
Q Consensus 114 lVlsDgapnv~g~-w--~-----~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~--F 176 (832)
+|+|||+ .+... . . .++. .........+..+..+|+|||++++.+-... -..+...|... |
T Consensus 179 lIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~~~~~~ 256 (280)
T COG2890 179 LIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFEDTGFF 256 (280)
T ss_pred EEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHHhcCCc
Confidence 9999984 32221 0 0 1111 1234567788899999999999998653333 34555555533 4
Q ss_pred cceEEecCCCCC
Q 003302 177 EKVEVDKPAASR 188 (832)
Q Consensus 177 ~~V~~~KP~sSR 188 (832)
..|...+....+
T Consensus 257 ~~v~~~~d~~g~ 268 (280)
T COG2890 257 EIVETLKDLFGR 268 (280)
T ss_pred eEEEEEecCCCc
Confidence 566777665554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=104.50 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+..++.+|||||||+|.++..++...+ ...|+|+|+++ |. ...++.++++|+.+.. +. .
T Consensus 109 ~l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp--------~~---~ 176 (340)
T PLN02490 109 DLSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP--------FP---T 176 (340)
T ss_pred ccCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC--------CC---C
Confidence 3335678999999999999998888775 46899999986 21 2357888888887643 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|++.++.+. ..+ ...+|+.+.++|+|||+|++.
T Consensus 177 ~sFDvVIs~~~L~~----~~d-------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 177 DYADRYVSAGSIEY----WPD-------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CceeEEEEcChhhh----CCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 67899999764321 111 124688999999999999874
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.7e-08 Score=101.07 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+|||||||+|.++..++..++ ....|+|||+++.. .++++.++++|+.... + .+.||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~----~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F----DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c----cCCccE
Confidence 67999999999999999988764 24689999999832 3567889999987532 1 157899
Q ss_pred EEeCCCCCCCCCchhHH-hHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEA-MSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|++|++........... +....+...++..|.++|++|+ ||+
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 99999755322111000 1112333456777778555555 544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=103.28 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=73.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+|||||||+|.++..++...| +..|+|+|+++.. .+ .++.++++|+.+. +.. ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~---------l~~---~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA---------LPG---RR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh---------CCC---CC
Confidence 6899999999999999998875 6799999999721 22 2488999998542 111 46
Q ss_pred ccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+|++|++....... ..++. ....+....+..+.++|+|||+|++.+..
T Consensus 202 fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 202 YDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 8999999753211111 00000 11244567788999999999999996654
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-07 Score=97.80 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
....+||+||||.|+.+..++++.+ ...|++||+++.. .-+++.++.+|.... +
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---------l 144 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---------V 144 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---------H
Confidence 3567899999999999998887633 4689999999721 135688888887542 1
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC----CCHHHHHHHHHHcccceE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS----QDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs----~d~~~ll~~L~~~F~~V~ 180 (832)
.. ..++||+|++|..+..+.. ... .....+..+.+.|+|||.|++-+-.. ..+..+...|+..|..|.
T Consensus 145 ~~-~~~~yDvIi~D~~dp~~~~---~~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 145 AE-TENSFDVIIVDSTDPVGPA---EGL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred hh-CCCcccEEEECCCCCCCch---hhh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 11 1267899999974322111 111 12456678899999999999843222 123455667788899887
Q ss_pred Eec-CCCCCCCCcceeEEEee
Q 003302 181 VDK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~g 200 (832)
.+. ++.+.+...-.|++|..
T Consensus 217 ~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 217 PYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred EEEeECCcccCchheeEEeec
Confidence 764 34444455567788754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-07 Score=91.60 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|++++|+|||+|+.+.-++ ++++.++|+|||-++-. ..+|+..+.++.-.. |.+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~---------L~~~- 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA---------LPDL- 100 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---------hcCC-
Confidence 5789999999999999999999 56668999999987521 367888899887542 2221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..||.|+..|.- . +..+|..+...|+|||.+|+-.-+......++..|.++
T Consensus 101 -~~~daiFIGGg~------~---------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 101 -PSPDAIFIGGGG------N---------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred -CCCCEEEECCCC------C---------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 257999998741 1 13456678899999999999777777767777777765
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=97.92 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=66.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+|||+|||+|+++..++...+ ++.|+|+|+++.. .+ .++.++++|+.... + .+.|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~----~~~f 68 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--------F----PDTY 68 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--------C----CCCC
Confidence 699999999999999998875 5789999999731 11 34788888886532 1 1568
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+|++..... +..+ ....|..+.++|+|||+|++..+
T Consensus 69 D~I~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 69 DLVFGFEVIH----HIKD-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CEeehHHHHH----hCCC-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999864321 1111 23567788999999999998544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=95.72 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C---CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P---IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++...+....|+|+|+++.. . ..++.++.+|+.+.. +.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~--- 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--------FP--- 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--------CC---
Confidence 367899999999999999999987656799999998621 1 235788889987643 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++..... +..+ ....|..+..+|+|||.|++..+..
T Consensus 119 ~~~~D~I~~~~~l~----~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFGLR----NVPD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecccc----cCCC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 15789999864311 1111 2345778889999999998865543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=98.48 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=78.9
Q ss_pred chhHHHHHHHhhhhh-c-CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCC--ceEE
Q 003302 22 YRSRASWKLVQLDSK-F-SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRG--AVSL 87 (832)
Q Consensus 22 yrsRaafKLiqi~~k-f-~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~--V~~i 87 (832)
|..|.-..+++-... + ..+.++.+|||||||+|.++..|+..++.+..|+|||+++ |. ..|+ |.++
T Consensus 41 y~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 41 YPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 445555544432111 1 1345778999999999999999998875456899999997 31 1344 5678
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
++|+++... ...... ....+|+.-|+.+ ++...+. ....|+.+.++|+|||.|++-+....+..
T Consensus 121 ~gD~~~~~~------~~~~~~-~~~~~~~~~gs~~--~~~~~~e------~~~~L~~i~~~L~pgG~~lig~d~~~~~~ 184 (301)
T TIGR03438 121 CADFTQPLA------LPPEPA-AGRRLGFFPGSTI--GNFTPEE------AVAFLRRIRQLLGPGGGLLIGVDLVKDPA 184 (301)
T ss_pred EEcccchhh------hhcccc-cCCeEEEEecccc--cCCCHHH------HHHHHHHHHHhcCCCCEEEEeccCCCCHH
Confidence 999987321 011100 1124444433322 1222221 24677888999999999998665555443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=104.38 Aligned_cols=103 Identities=12% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..+||||||+|.++..+|...| ...++|||+++ + ..+.++.++++|+... ...+.. +
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l------l~~~~~---~ 191 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL------LELLPS---N 191 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh------hhhCCC---C
Confidence 467999999999999999999986 67999999985 2 1467899999998642 122333 6
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||.|+++.+. .|....... -.....|..+.++|+|||.|.+.+
T Consensus 192 s~D~I~lnFPd----PW~KkrHRR-lv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPV----PWDKKPHRR-VISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCC----Cccccchhh-ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 78999987531 243221111 123567889999999999998844
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=94.85 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C-------CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P-------IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~-------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|..+..++.. + ...|+|||+++.. . ..++. +.... ... ...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~----------~~~-~~~ 179 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVE----LNVYL----------PQG-DLK 179 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEE----------ccC-CCC
Confidence 457899999999999988877664 3 3469999999832 1 11220 00000 000 025
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~ 180 (832)
||+|+++... + .....+..+.++|+|||+|++.-+.......+...+..+ |.-+.
T Consensus 180 fD~Vvani~~--------~------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 180 ADVIVANILA--------N------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred cCEEEEcCcH--------H------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 7999997421 1 123456778999999999999766666666777777765 54443
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=99.83 Aligned_cols=182 Identities=20% Similarity=0.247 Sum_probs=108.7
Q ss_pred HHHHHHhcCchhHHHHHHHhhhhhcC---------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----
Q 003302 13 YYRLAKEHGYRSRASWKLVQLDSKFS---------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---- 79 (832)
Q Consensus 13 yy~~Ake~gyrsRaafKLiqi~~kf~---------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---- 79 (832)
+|..-.+.|+-.|..-+++.+-.--+ +.+++..++|||||-||=+.-.-. ..-+.+||+||+...
T Consensus 79 HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 79 HYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred HHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHH
Confidence 34445567766666555555422111 236899999999999996543322 234589999998632
Q ss_pred --------C-----CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHH
Q 003302 80 --------P-----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLAT 146 (832)
Q Consensus 80 --------~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~ 146 (832)
. +-.+.|+.+|.+.... ...+.. +..+||+|-|-.++++. |...+-...+|+.++
T Consensus 157 ~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l----~d~~e~-~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva 224 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKFIFTAVFIAADCFKERL----MDLLEF-KDPRFDIVSCQFAFHYA-------FETEESARIALRNVA 224 (389)
T ss_pred HHHHHHHHhhhhcccceeEEEEeccchhHH----HHhccC-CCCCcceeeeeeeEeee-------eccHHHHHHHHHHHH
Confidence 1 1236789999987543 333321 11348999998765432 222233567899999
Q ss_pred hhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 147 QFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 147 ~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
.+|+|||.||-.+ ++-..|+|.|+.. .+. + -.-++|-|--.-..+...+.-++-..|.|.-.
T Consensus 225 ~~LkpGG~FIgTi---Pdsd~Ii~rlr~~--e~~-------~-~gNdiykv~y~~~~~k~~~~p~fG~kY~F~Le 286 (389)
T KOG1975|consen 225 KCLKPGGVFIGTI---PDSDVIIKRLRAG--EVE-------R-FGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLE 286 (389)
T ss_pred hhcCCCcEEEEec---CcHHHHHHHHHhc--cch-------h-hcceeeeEeeeeecccccCCCCccceEEEEcc
Confidence 9999999999855 3446678888765 211 1 12245544444333333343444456666544
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=99.58 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++ +|||||||+|.++..++.. +..|+|||+++.. .+ ++.+..+|+.... +
T Consensus 119 ~~~~-~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~--------~---- 181 (287)
T PRK12335 119 VKPG-KALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS--------I---- 181 (287)
T ss_pred cCCC-CEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc--------c----
Confidence 4444 8999999999999999875 4699999999721 12 5777788876532 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|++.+... +.. ......+++.+.++|+|||++++
T Consensus 182 ~~~fD~I~~~~vl~----~l~-----~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 QEEYDFILSTVVLM----FLN-----RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cCCccEEEEcchhh----hCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 16789999976421 111 11234677889999999999766
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=98.44 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCC--CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.++.+|||||||||.++..++... ++.|+|||+++ |... ....++++|+.+.+ +.+ ++||+|++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~d---~sfD~v~~ 116 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDKVVGSFEALP--------FRD---KSFDVVMS 116 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccceEEechhhCC--------CCC---CCEEEEEe
Confidence 457899999999999999998875 46999999998 4321 12345778877643 112 77899999
Q ss_pred CCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC
Q 003302 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK 152 (832)
Q Consensus 118 Dgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG 152 (832)
.... +|..+ ...+|+.+.++|+|+
T Consensus 117 ~~~l----~~~~d-------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFAL----HASDN-------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChh----hccCC-------HHHHHHHHHHHhcCc
Confidence 7532 22222 246788999999994
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-07 Score=97.88 Aligned_cols=131 Identities=24% Similarity=0.311 Sum_probs=80.9
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCceE---E-
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAVS---L- 87 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~~---i- 87 (832)
+|+..-....|-.+.+ ++++|.+|||+|||+|.++.+++.. + ...|+|+|+.|+. ...+|.. .
T Consensus 143 TG~HpTT~lcL~~Le~---~~~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 143 TGTHPTTSLCLEALEK---LLKKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred CCCChhHHHHHHHHHH---hhcCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 4444444444333322 2458999999999999999988876 3 4579999999853 1233331 1
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE-EcCCCCHH
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK-VFRSQDYS 166 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K-VFrs~d~~ 166 (832)
..+... ... .++||+|+||-- ...+......+..+|+|||+|+++ |+..+ ..
T Consensus 218 ~~~~~~---------~~~---~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q-~~ 270 (300)
T COG2264 218 GFLLLE---------VPE---NGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQ-AE 270 (300)
T ss_pred cccchh---------hcc---cCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhH-HH
Confidence 111111 011 158899999831 111234556788999999999997 44444 56
Q ss_pred HHHHHH-HHcccceEEe
Q 003302 167 SVLYCL-KQLFEKVEVD 182 (832)
Q Consensus 167 ~ll~~L-~~~F~~V~~~ 182 (832)
.+...+ ++-|.-+.+.
T Consensus 271 ~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 271 SVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHhCCCeEeEEE
Confidence 666666 4457666554
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-07 Score=97.77 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=92.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.+.+|||||||+|.++..++.+.+ ...|+|||+++. . ..+++.++++|+.+.. .. ..||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~---------~~---~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE---------SN---EKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc---------cc---CCCcEE
Confidence 356899999999999998888764 468999999982 1 3567899999987632 11 568999
Q ss_pred EeCCCCCCCCCch-hHHhHH-------hHH-HHHHHHHHHhhcccCcEEEEEEcCCC-------CHHHHHHHHHHc-ccc
Q 003302 116 LHDGSPNVGGAWA-QEAMSQ-------NAL-VIDSVKLATQFLAPKGTFVTKVFRSQ-------DYSSVLYCLKQL-FEK 178 (832)
Q Consensus 116 lsDgapnv~g~w~-~D~~~q-------~~L-~~~aLk~A~~~LkpGG~fV~KVFrs~-------d~~~ll~~L~~~-F~~ 178 (832)
++|++......-. .+.+.. ..| +...+..+..+|+|+|.+.+. +.+. .-..+..++.+. |.-
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-EeccccccccCCHHHHHHHHHhcCcEe
Confidence 9998754322111 111111 011 345667778899999988774 4332 223444444433 210
Q ss_pred -----e--EEecCCCCCCCCcceeEEEeeccCCCC
Q 003302 179 -----V--EVDKPAASRSASAEIYLLGIKYKAPAK 206 (832)
Q Consensus 179 -----V--~~~KP~sSR~~SaEiyvVc~gfk~p~~ 206 (832)
| .++.. ..+.++.-.=|||..|..+..
T Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PHA03411 210 YAGCGIDTSIYRD-EWHSTNVLTEVVEVRYYEKEA 243 (279)
T ss_pred cCCCCcccceehh-hccCCCccceEEEEEeccccc
Confidence 1 11111 123445556689999987654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=98.48 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC------------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA------------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~------------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++.+|+|+|||||+++ .+++....+++.++|+|+++-. .+ .++.|.++|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence 6689999999999864 4455455567899999999721 12 359999999986310
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHHHHHHcccceEEecC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLYCLKQLFEKVEVDKP 184 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~~L~~~F~~V~~~KP 184 (832)
..+.||+|+++.. . .|.... ...+|..+.+.|+|||.|++-...+ .-|..+....-..|+...++.|
T Consensus 192 ~l~~FDlVF~~AL-i---~~dk~~------k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 192 SLKEYDVVFLAAL-V---GMDKEE------KVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred ccCCcCEEEEecc-c---cccccc------HHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 0167899999832 1 122111 1356778899999999999854211 1122221112236888888888
Q ss_pred CCCCCCCcceeEEEeec
Q 003302 185 AASRSASAEIYLLGIKY 201 (832)
Q Consensus 185 ~sSR~~SaEiyvVc~gf 201 (832)
... ..++-+|+-+.++
T Consensus 262 ~~~-v~Nsvi~~r~~~~ 277 (296)
T PLN03075 262 TDE-VINSVIIARKPGG 277 (296)
T ss_pred CCC-ceeeEEEEEeecC
Confidence 444 5666666655553
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=90.89 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.++.+|||+|||+|.++..++...+ ++.|+|||+++ +. ..+++.++++|+.++ +.. +.|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~---------~~~---~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP---------FKD---NFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC---------CCC---CCE
Confidence 356778999999999999999988765 57999999997 21 256788889998762 112 678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+|++++... +..+ ..+..+++.+.+++ +|.+++..
T Consensus 107 D~V~~~~vL~---hl~p------~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 107 DLVLTKGVLI---HINP------DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEEECChhh---hCCH------HHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999986421 1111 12346677777776 45555543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=97.97 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCce--EEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAV--SLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~--~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+|.+|||+|||-|.+++.+|+. +..|+|+|+++.. ...++. +.+..+.+ +.... ++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----------l~~~~-~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----------LASAG-GQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----------HHhcC-CC
Confidence 7889999999999999999986 5799999999731 112232 33333222 11111 68
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
||+|+|.- ..+|+.. ....++.|..+|+|||.++++..
T Consensus 125 FDvV~cmE--------VlEHv~d---p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 125 FDVVTCME--------VLEHVPD---PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccEEEEhh--------HHHccCC---HHHHHHHHHHHcCCCcEEEEecc
Confidence 99999953 2333322 24577889999999999998654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-07 Score=107.17 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC--CceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR--GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~--~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+|.+|||||||+|+++.+++.. + ...|++||+++. +.+. ++.++++|+.+.. .. + .
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l-----~~-~-~- 606 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL-----KE-A-R- 606 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH-----HH-c-C-
Confidence 35789999999999999999875 2 347999999962 1232 5889999986521 11 1 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++|++....+....+.+........++..+.++|+|||+|++..
T Consensus 607 --~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 --EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred --CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57899999986433221101111112223456778899999999998743
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.8e-07 Score=98.46 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+|||+|||+|.++..+++.++..+.|+|||+++- ..+.++.++++|+.... ..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~---------~~-- 146 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV---------PE-- 146 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc---------cc--
Confidence 467899999999999999999998875678999999972 13457888899875421 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|+++++. ... ...+.+.|+|||.+++.+
T Consensus 147 ~~~fD~Ii~~~g~-----~~i------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGV-----DEV------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCch-----HHh------------HHHHHHhcCCCCEEEEEe
Confidence 1468999997531 111 112467899999998844
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-07 Score=84.07 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=49.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC----------CCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP----------IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~----------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
||+|||+|.++..+....+ ...|+|+|+++ +.. ..+...+..+..+.. .....+.||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF---------DYDPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS------------CCC----SEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh---------hccccccccee
Confidence 7999999999999999885 67999999998 321 112233333333311 00011478999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
++.... +|.. -...+++.+.++|+|||+|
T Consensus 71 ~~~~vl----~~l~-------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 71 VASNVL----HHLE-------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEE-TT----S--S--------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhH----hhhh-------hHHHHHHHHHHHcCCCCCC
Confidence 997542 2221 1346788999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=96.19 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
..+|.+|||+|||+|..+.+++.. + ..+|+|+|++|.. .+.....+. ...+. .
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~-------------~ 222 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDL-------------V 222 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCT-------------C
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eeccc-------------c
Confidence 467889999999999999888876 3 4589999999852 222211121 11110 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~ 180 (832)
.++||+|++|-- . ..+...+.....+|+|||+||++=+.......+...+.+.|.-+.
T Consensus 223 ~~~~dlvvANI~--------~------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 223 EGKFDLVVANIL--------A------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVE 280 (295)
T ss_dssp CS-EEEEEEES---------H------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEE
T ss_pred cccCCEEEECCC--------H------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEE
Confidence 177899999842 1 112345556788999999999987666666777777766555443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.1e-07 Score=95.73 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCcCH----HHHHHHHhCCC----CCEEEEEeCCCC-C-----C---------C-----------------
Q 003302 42 SSHAVLDLCAAPGG----WMQVAVQRVPV----GSLVLGLDLVPI-A-----P---------I----------------- 81 (832)
Q Consensus 42 ~g~~VLDLGcGPGg----~sq~La~~~p~----~~~ViGVDLsp~-~-----~---------i----------------- 81 (832)
++.+|+|+|||+|. ++..++...+. +..|+|+|+++- . . +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45789999999995 55566665542 468999999962 1 1 1
Q ss_pred ------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 82 ------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 82 ------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
..|.|.++|+.++.. +.+.||+|+|.... ++ + .......++..+.++|+|||+|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----------~~~~fD~I~crnvl----~y----f-~~~~~~~~l~~l~~~L~pGG~L 238 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----------PLGDFDLIFCRNVL----IY----F-DEPTQRKLLNRFAEALKPGGYL 238 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----------ccCCCCEEEechhH----Hh----C-CHHHHHHHHHHHHHHhCCCeEE
Confidence 147788888887531 12678999995321 11 1 1123457888999999999999
Q ss_pred EE
Q 003302 156 VT 157 (832)
Q Consensus 156 V~ 157 (832)
++
T Consensus 239 ~l 240 (264)
T smart00138 239 FL 240 (264)
T ss_pred EE
Confidence 97
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-07 Score=92.09 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++++ .++||||||.|.-+.+||.. +..|+|+|+++.. .--.|.+.+.|+.+.. +.
T Consensus 27 ~~~~~-g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~--------~~-- 92 (192)
T PF03848_consen 27 PLLKP-GKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD--------FP-- 92 (192)
T ss_dssp TTS-S-SEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS---------T--
T ss_pred hhcCC-CcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--------cc--
Confidence 34554 58999999999999999987 6799999999731 1113788899998753 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..||+|++...++ +-+..+...++......|+|||.+++.+|
T Consensus 93 --~~yD~I~st~v~~---------fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 --EEYDFIVSTVVFM---------FLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --TTEEEEEEESSGG---------GS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCcCEEEEEEEec---------cCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 5689999865322 11112234556677889999999988554
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=91.10 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC---------------CCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI---------------RGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i---------------~~V~~i~gDIt~~~~~ 97 (832)
.++.+|||+|||.|..+.+|+.+ +..|+|||+++.. .+ .+|+++++|++++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57789999999999999999975 6789999999731 11 2477889999875310
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..+.||+|+..+... ++. ..+....+..+.++|+|||++++..|
T Consensus 110 ----------~~~~fD~i~D~~~~~--------~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 110 ----------DLGPVDAVYDRAALI--------ALP-EEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ----------cCCCcCEEEechhhc--------cCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 115689998765321 110 12234567788999999998776554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=88.91 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++||.+|||||||.|.+..+|.... +..++|||+++.. --.++.++++|+.+- + ..+.+ .+||.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g-----L-~~f~d---~sFD~ 78 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG-----L-ADFPD---QSFDY 78 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh-----H-hhCCC---CCccE
Confidence 57899999999999999999998874 5689999999842 235788999999762 1 12333 78899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL 169 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll 169 (832)
|+..-+ .++. .-...+|. ++|+=|...|+ .|+.+.|....
T Consensus 79 VIlsqt--------LQ~~---~~P~~vL~---EmlRVgr~~IV-sFPNFg~W~~R 118 (193)
T PF07021_consen 79 VILSQT--------LQAV---RRPDEVLE---EMLRVGRRAIV-SFPNFGHWRNR 118 (193)
T ss_pred EehHhH--------HHhH---hHHHHHHH---HHHHhcCeEEE-EecChHHHHHH
Confidence 998532 2222 22233444 45666777777 78887655443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=92.60 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CC--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------AP--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.+||||+|-||||+.+++.- ....|++||++.- +. ...+.++++|+.+.- .. +..
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l-----~~-~~~-- 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL-----KR-LKK-- 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH-----HH-HHH--
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH-----HH-Hhc--
Confidence 5789999999999999988753 2347999999951 22 346889999987632 11 221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~~ 174 (832)
.++||+|++||+....+.+.... -...++..|..+|+|||.++++...+. +...++..+..
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~-----~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLER-----DYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHH-----HHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHH-----HHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 16899999999755545444321 123567789999999999987554332 33444555544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.5e-07 Score=88.98 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=83.1
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L 104 (832)
|.+-....+|||||||.|.+..-|++.- -.+..+|||.++-+ ..++ |.|-|.||+++..
T Consensus 62 ~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~-------- 132 (227)
T KOG1271|consen 62 SRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF-------- 132 (227)
T ss_pred hhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc--------
Confidence 4433445699999999999998887763 35679999999621 2455 8899999999632
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
..+.||+|+--|....-+. +++.... .+ ..-+.....+|+|||+||| +-...+...|...+... |..+..+
T Consensus 133 ---~~~qfdlvlDKGT~DAisL-s~d~~~~-r~-~~Y~d~v~~ll~~~gifvI-tSCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 133 ---LSGQFDLVLDKGTLDAISL-SPDGPVG-RL-VVYLDSVEKLLSPGGIFVI-TSCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred ---cccceeEEeecCceeeeec-CCCCccc-ce-eeehhhHhhccCCCcEEEE-EecCccHHHHHHHHhcCCeEEEEee
Confidence 2267898887663221100 0010000 00 1113356789999999998 45667777888777765 6555444
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=90.43 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++... +.|+|||+++-. .+.++.++++|+.... . .
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~--~ 141 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW---------P--A 141 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC---------C--c
Confidence 4678999999999999998888764 389999999621 2456888899875421 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.++||+|++++++. +. ...+...|+|||.|++-+.
T Consensus 142 ~~~fD~I~~~~~~~----~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAP----EI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCch----hh-------------hHHHHHhcCCCcEEEEEEc
Confidence 16789999986421 11 1234678999999998654
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-06 Score=91.59 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||+||||.|+.+..++++ +....|+.|||++.. + -|++.++.+|.... +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~---------l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF---------LK 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH---------Hh
Confidence 45689999999999999988876 434689999999721 1 25688888886542 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE---c-CCCCHHHHHHHHHHcc-cceE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV---F-RSQDYSSVLYCLKQLF-EKVE 180 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV---F-rs~d~~~ll~~L~~~F-~~V~ 180 (832)
....+.||+|++|.....+.. ..+ .....+..+.+.|+|||.|++-. | ....+..++..|+..| ..|.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~---~~L----~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~ 232 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPA---QEL----FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN 232 (308)
T ss_pred hccCCCCCEEEEcCCCCCCch---hhh----hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence 111257899999974322111 001 12456678899999999998732 2 2223455667777888 4553
Q ss_pred Ee-cCCCCCCCCcceeEEEee
Q 003302 181 VD-KPAASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~-KP~sSR~~SaEiyvVc~g 200 (832)
.+ -..-+-+...-.|++|-.
T Consensus 233 ~~~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 233 YAWTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred EEEecCCCcCCCceEEEEEEC
Confidence 32 123334434456777743
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=92.68 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC--CCceEEE-ccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI--RGAVSLE-QDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i--~~V~~i~-gDIt~~~~~~~l~~~L~~~~ 108 (832)
|+.|||+|||.|-+++.|++. +..|+|||+++.. |. .+|.+.. .+.++.. ..
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E-----------~~ 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE-----------GL 155 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh-----------hc
Confidence 488999999999999999987 5799999999621 21 1222221 2222211 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
++.||.|+|-. ..+|.. .....+..+...|+|||.+++..
T Consensus 156 ~~~fDaVvcse--------vleHV~---dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 TGKFDAVVCSE--------VLEHVK---DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccccceeeeHH--------HHHHHh---CHHHHHHHHHHHhCCCCceEeee
Confidence 26689999953 233332 23456677889999999998843
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.6e-06 Score=92.50 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----CC-------------CCCceEEEccCCChhHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----AP-------------IRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~~-------------i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
....+||+||||.|+.+..++++. ....|++||+++. .. .|++.++.+|....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-------- 219 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-------- 219 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH--------
Confidence 345799999999999888777653 3569999999972 11 24677788887642
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH----HHHHHHHcccc
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS----VLYCLKQLFEK 178 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~----ll~~L~~~F~~ 178 (832)
+.. ..+.||+|++|.+ +..+..... ......+..+.+.|+|||.||+-.-.+..... +...|...|..
T Consensus 220 -L~~-~~~~YDVIIvDl~-DP~~~~~~~-----LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 220 -LSS-PSSLYDVIIIDFP-DPATELLST-----LYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred -HHh-cCCCccEEEEcCC-Cccccchhh-----hhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence 111 1257899999963 211110111 11245677899999999999985332322222 33445555665
Q ss_pred eEEecCCCCCCCCcceeEEEee
Q 003302 179 VEVDKPAASRSASAEIYLLGIK 200 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~g 200 (832)
+..+.-.-+-.++.-.|++|..
T Consensus 292 v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 292 VKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred eEEEEEecCCCCCceEEEEEeC
Confidence 5543322212233466777743
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=75.93 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=66.2
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+|||+|||+|.++..++. .....++|+|+++.. ....+.++++|+.+... . ..+.||
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------E---ADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------c---cCCceE
Confidence 489999999999988887 246799999998621 12457888888876432 1 125689
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|++++.... + .......+..+..+|+|||.|++.
T Consensus 69 ~i~~~~~~~~---~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 69 VIISDPPLHH---L-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEccceee---h-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999875321 1 122346677888999999999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=95.56 Aligned_cols=121 Identities=26% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.+||||+|-||+|+.+++.. ..+.||+||++.- +.+ ..+.++++|+... +......
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-----l~~~~~~-- 287 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-----LRKAERR-- 287 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH-----HHHHHhc--
Confidence 3899999999999999999864 2349999999952 223 2367888887653 2222221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-CCCCHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-RSQDYSSVLYCLK 173 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-rs~d~~~ll~~L~ 173 (832)
-..||+|+.||+-..-+... . +....-....+..|.++|+|||+++++.- +......++.++.
T Consensus 288 g~~fDlIilDPPsF~r~k~~-~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQ-E-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred CCcccEEEECCcccccCccc-c-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 14789999998533221110 0 11112234667789999999999998553 3334344444433
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-07 Score=95.44 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|++|||+|||+|.++.+|+...+..+.|++||+.+-. .+.+|.++++|..... . .
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~---------~--~ 138 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW---------P--E 138 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT---------G--G
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc---------c--c
Confidence 6899999999999999999999998877899999998721 3568999999976421 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||+|++.++.. ... ......|++||++|+=+
T Consensus 139 ~apfD~I~v~~a~~-----~ip------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVP-----EIP------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBS-----S--------------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccc-----hHH------------HHHHHhcCCCcEEEEEE
Confidence 26899999987521 111 12457899999999833
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=87.01 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||||||+|.++..++.+ .+.|+|||+++. . ..+++.++++|+..... .. ..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~--------~~---~~ 77 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL--------PK---LQ 77 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc--------cc---cC
Confidence 56789999999999999999987 468999999972 1 23578899999987531 11 34
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-------C--CCCHHHHHHHHHHcccceEEe
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-------R--SQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-------r--s~d~~~ll~~L~~~F~~V~~~ 182 (832)
||+|++|.+.+.. ..++..++.. ..+.++|+|++..- . +..| ..+.++.++|..++..
T Consensus 78 ~d~vi~n~Py~~~----------~~~i~~~l~~--~~~~~~~~l~~q~e~a~rl~~~~~~~~y-~~lsv~~~~~~~~~~~ 144 (169)
T smart00650 78 PYKVVGNLPYNIS----------TPILFKLLEE--PPAFRDAVLMVQKEVARRLAAKPGSKDY-GRLSVLLQPYFDVKIL 144 (169)
T ss_pred CCEEEECCCcccH----------HHHHHHHHhc--CCCcceEEEEEEHHHhHHhcCCCCCCcc-cHHHHHHHHHeeEEEE
Confidence 7999999764321 1222233322 23558899887421 1 1344 3455666666666654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=94.71 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..+++..| +..++++|+.++. .+ .+|.++.+|+.+.. +
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------~---- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES--------Y---- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC--------C----
Confidence 46778999999999999999999987 5799999985332 12 35889999987532 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+|+|++..... .|..+ .+..+|+.+.+.|+|||+|++.
T Consensus 214 -~~~D~v~~~~~lh---~~~~~------~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 -PEADAVLFCRILY---SANEQ------LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred -CCCCEEEeEhhhh---cCChH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 2359887653211 23222 2356788999999999999885
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-06 Score=100.55 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
++.+|||||||+|.++..++... ..|+|||+++. . ..+++.++++|+...... + +.+.|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------~---~~~~f 104 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------I---SDGSV 104 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC------C---CCCCE
Confidence 56799999999999999999873 48999999972 1 135688999998653210 1 12678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|+++.+.. |..+ ..+..++..+.++|+|||+|++.
T Consensus 105 D~I~~~~~l~----~l~~-----~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 105 DLIFSNWLLM----YLSD-----KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEEehhhhHH----hCCH-----HHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999986421 1111 11346778899999999999885
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.2e-07 Score=92.13 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=82.0
Q ss_pred CchhHHHH--HHHh-hhhhcC--CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--CC-------CCCCceE
Q 003302 21 GYRSRASW--KLVQ-LDSKFS--FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--IA-------PIRGAVS 86 (832)
Q Consensus 21 gyrsRaaf--KLiq-i~~kf~--fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~~-------~i~~V~~ 86 (832)
+||-+..| ||.- |..-.. .+.+|..||-||+++|....+++..+++.|.|+||+.+| +. ..+||..
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiP 126 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIP 126 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEE
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceee
Confidence 56666555 4443 222222 368999999999999999999999999899999999997 22 2479999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.+|.+.|.....+ .+.+|+|++|.+- ++. ...++..|..+|++||.|++.+
T Consensus 127 Il~DAr~P~~Y~~l--------v~~VDvI~~DVaQ-------p~Q------a~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 127 ILEDARHPEKYRML--------VEMVDVIFQDVAQ-------PDQ------ARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EES-TTSGGGGTTT--------S--EEEEEEE-SS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeccCCChHHhhcc--------cccccEEEecCCC-------hHH------HHHHHHHHHhhccCCcEEEEEE
Confidence 99999998754322 2677999999651 121 2345668889999999999855
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-06 Score=104.98 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC----------------CCceEEEccCCChh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI----------------RGAVSLEQDITKPE 95 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i----------------~~V~~i~gDIt~~~ 95 (832)
+.+|||||||+|.++..++..++ .+.|+|||+++.. .+ .+|.++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999876 4699999999721 11 25889999987631
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCc------h--hH------------H-------hHHhHHHHHHHHHHHhh
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAW------A--QE------------A-------MSQNALVIDSVKLATQF 148 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w------~--~D------------~-------~~q~~L~~~aLk~A~~~ 148 (832)
... ...||+|+||++.-..+.+ + ++ + ...+.+...++..+..+
T Consensus 198 ---------~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~ 267 (1082)
T PLN02672 198 ---------RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISV 267 (1082)
T ss_pred ---------ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHh
Confidence 110 0358999999852211111 0 00 0 11234557788899999
Q ss_pred cccCcEEEEEEcCCCCHHHHH-HHHHHc-ccceEEe
Q 003302 149 LAPKGTFVTKVFRSQDYSSVL-YCLKQL-FEKVEVD 182 (832)
Q Consensus 149 LkpGG~fV~KVFrs~d~~~ll-~~L~~~-F~~V~~~ 182 (832)
|+|||++++.+-..+. ..+. .+|... |..+.++
T Consensus 268 L~pgG~l~lEiG~~q~-~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 268 IKPMGIMIFNMGGRPG-QAVCERLFERRGFRITKLW 302 (1082)
T ss_pred ccCCCEEEEEECccHH-HHHHHHHHHHCCCCeeEEe
Confidence 9999999997754433 3455 355543 6555444
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.9e-06 Score=87.58 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.-+..++..++.+++|++||+++-. .+ .++.++++|+.+. +........
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-----L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-----LDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHHhCCC
Confidence 467899999999999888888888888899999999721 22 3578899998652 111111111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|+.|+.. ..+ ...+..+.++|+|||.+++
T Consensus 142 ~~~fD~VfiDa~k--------~~y------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADK--------PNY------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCeEEEE
Confidence 2578999999742 112 1345567899999999986
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=87.28 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.+||+||||.|+++..++.+.+ ...|++||+++.. ..+++.++.+|.... + ..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----l----~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----L----AD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----H----Hh
Confidence 456999999999999988877643 4689999999621 124566666665431 1 11
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceEEe
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~~~ 182 (832)
. .++||+|++|.+...+.... -.....+..+.+.|+|||.|++..-.+. .+..+...++..|..|..+
T Consensus 142 ~-~~~yDvIi~D~~~~~~~~~~-------l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~ 213 (270)
T TIGR00417 142 T-ENTFDVIIVDSTDPVGPAET-------LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYY 213 (270)
T ss_pred C-CCCccEEEEeCCCCCCcccc-------hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEE
Confidence 1 16789999997522211110 0124566788899999999998522111 1334455677789888765
Q ss_pred cC-CCCCCCCcceeEEEee
Q 003302 183 KP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 183 KP-~sSR~~SaEiyvVc~g 200 (832)
.. ..+.+...-.|++|..
T Consensus 214 ~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 214 TANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EEEcCccccchhEEEEEEC
Confidence 43 3333344457888865
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-06 Score=88.77 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++... +++..|+|||+++ |. ..+++.+.+++..... .. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~--------~~---~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV--------AE---G 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc--------cc---C
Confidence 456799999999999998887653 3346899999997 21 1245666666554422 11 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
+.||+|+++... +|..+.. ...+|+.+.++++ |+.++..+.++
T Consensus 128 ~~fD~V~~~~~l----hh~~d~~-----~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFL----HHLDDAE-----VVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCee----ecCChHH-----HHHHHHHHHHhcC-eeEEEeccccC
Confidence 678999998642 2332321 2357788888887 44544434444
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-06 Score=95.23 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------------CC----CCceEEEccCCChhHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------------PI----RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------------~i----~~V~~i~gDIt~~~~~~~l 100 (832)
++..|||||||-||-+.-.... .-..++|+|++... .. -.+.++.+|.+... |
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----L 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----H
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----h
Confidence 7899999999999965544443 24699999999521 01 13567888888754 3
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
...+... ...||+|.|-.+.++. +....-....|..+...|+|||.||..+..+
T Consensus 136 ~~~~~~~-~~~FDvVScQFalHY~-------Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 136 REKLPPR-SRKFDVVSCQFALHYA-------FESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HCTSSST-TS-EEEEEEES-GGGG-------GSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhhcccc-CCCcceeehHHHHHHh-------cCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 3333321 2589999998764332 2333445678999999999999999866443
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.4e-06 Score=91.04 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEc-cCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQ-DITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~g-DIt~~~~~~~l~~~L~~~ 107 (832)
+++|..|||=-|||||+...+.- + ++.++|+|++. |. .+....++.. |++.++ |..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--------l~~- 262 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--------LRD- 262 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--------CCC-
Confidence 47899999999999999876654 3 67999999985 21 1344445555 888865 222
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAAS 187 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sS 187 (832)
.+||.|++|++...+...... ....|...+|..+.++|++||++|+-.+ ....-+...-.|.-+..+.-...
T Consensus 263 --~~vdaIatDPPYGrst~~~~~--~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~~~~~~~H 334 (347)
T COG1041 263 --NSVDAIATDPPYGRSTKIKGE--GLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLGRFTMRVH 334 (347)
T ss_pred --CccceEEecCCCCcccccccc--cHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEEEEEEeec
Confidence 357999999863322211111 1246778999999999999999988544 23344556666777776644444
Q ss_pred CCCCcceeEE
Q 003302 188 RSASAEIYLL 197 (832)
Q Consensus 188 R~~SaEiyvV 197 (832)
+.-+..+||+
T Consensus 335 ~sLtR~i~v~ 344 (347)
T COG1041 335 GSLTRVIYVV 344 (347)
T ss_pred CceEEEEEEE
Confidence 4444455544
|
|
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-05 Score=91.49 Aligned_cols=176 Identities=20% Similarity=0.252 Sum_probs=115.1
Q ss_pred HHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCC--------C----Cce
Q 003302 26 ASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------API--------R----GAV 85 (832)
Q Consensus 26 aafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i--------~----~V~ 85 (832)
|-|||--|...+++ .. .-+|-.|=|.||.+.++.+..| .++++=.-|-.+ .|. . +|.
T Consensus 308 AHYKlRsIL~~~~i-~~-~d~l~~GDGSGGita~lLR~~p-~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcv 384 (675)
T PF14314_consen 308 AHYKLRSILKNLNI-KY-RDALCGGDGSGGITACLLRMNP-TSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCV 384 (675)
T ss_pred chhhHHHHHHhcCC-Cc-ceeEEEecCchHHHHHHHHhCc-ccceeeeccccccCCCCCCCCCCCcHHHhccCcccceee
Confidence 45677777666664 22 3467777789999999998887 556665433321 111 1 122
Q ss_pred E------EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 86 S------LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 86 ~------i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .-.|++++.+-.......... .-.+|+|++|+- +.|..............+..+|.++|++|+|+
T Consensus 385 n~~~~W~~pSDLs~~~TW~YF~~l~~~~-~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKT 456 (675)
T PF14314_consen 385 NLDTCWEHPSDLSDPETWKYFVSLKKQH-NLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKT 456 (675)
T ss_pred cchhhhcCccccCCccHHHHHHHHHhhc-CCcccEEEEece-------ecChHHHHHHHHHHHHHHHHhcCCCcEEEEeh
Confidence 1 235777775554444433322 257899999974 12222222222334456778999999999998
Q ss_pred cCCC--CH-HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccch
Q 003302 160 FRSQ--DY-SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDV 214 (832)
Q Consensus 160 Frs~--d~-~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp 214 (832)
|-+. .. ..++..+..+|..|.++.+..|=.-++|+|+||++++... +..+++-
T Consensus 457 Ylt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~--~~~~~~~ 512 (675)
T PF14314_consen 457 YLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP--DRPYVDW 512 (675)
T ss_pred hHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC--CcCCCCH
Confidence 8542 22 2578889999999999999998889999999999998754 4444443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-06 Score=85.88 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=88.4
Q ss_pred CchhHHHH--HHHh-hhhh--cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceE
Q 003302 21 GYRSRASW--KLVQ-LDSK--FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVS 86 (832)
Q Consensus 21 gyrsRaaf--KLiq-i~~k--f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~ 86 (832)
.||-+..| ||.- |.-- --+++||..||=|||+.|.-..+++..+++.+.|++|+.++.. ..+||+.
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiP 209 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIP 209 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCcee
Confidence 46666666 3432 1111 1146899999999999999999999999999999999999742 3478999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
+..|.+.+.-+.++. +-+|+|++|.++ +|... .+.-.|..||++||.||+.+..+
T Consensus 210 IiEDArhP~KYRmlV--------gmVDvIFaDvaq-------pdq~R------ivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLV--------GMVDVIFADVAQ-------PDQAR------IVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred eeccCCCchheeeee--------eeEEEEeccCCC-------chhhh------hhhhhhhhhhccCCeEEEEEecc
Confidence 999999876443332 566999999763 23222 22336889999999999987643
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.3e-06 Score=87.09 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC---------------CCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI---------------RGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i---------------~~V~~i~gDIt~~~~~ 97 (832)
.++.+|||+|||.|.-+.+|+.+ +..|+|||+++.. .+ ..|+++++|+.++...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 46789999999999999999975 6799999999731 11 2477889999875311
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+.||+|+--+... ++ ........+..+.++|+|||++++
T Consensus 113 ----------~~~~fd~v~D~~~~~--------~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 ----------DLADVDAVYDRAALI--------AL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ----------cCCCeeEEEehHhHh--------hC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 125689998654211 11 112235667788999999997544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=82.39 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|||+++. . .. .++.+.++|+.+..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------------- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------------- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-------------
Confidence 45789999999999999999875 458999999972 1 11 36788888887631
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..||+|++..... ++.. .....++..+.+++++|+.+.+
T Consensus 118 -~~fD~ii~~~~l~---~~~~------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLI---HYPA------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHH---hCCH------HHHHHHHHHHHHHhCCCEEEEE
Confidence 5679999853210 1111 1123456667777776655543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-05 Score=80.69 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|||||||+|.++..++.. ...|+|+|+++-. .+.++.+.++|+..... . ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~-~~~ 111 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---------K-GAK 111 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---------C-CCC
Confidence 4789999999999999988875 3469999998621 12246677777654221 1 115
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.||+|++..... +.. -...+|..+.++|+|||.+++..+.
T Consensus 112 ~~D~i~~~~~l~--------~~~---~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 112 SFDVVTCMEVLE--------HVP---DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CccEEEehhHHH--------hCC---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 789999864311 111 1235677888999999999886543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=82.18 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-------CCC------CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-------API------RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-------~~i------~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.|.+|||.|.|=|..+..++.+- ..+|+.|+.+|. +|. ..+.++.||+.. +...+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e------~V~~~~D- 203 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE------VVKDFDD- 203 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH------HHhcCCc-
Confidence 358999999999999998888762 338999988873 232 246788888765 2233444
Q ss_pred cCCcccEEEeCCCCC-CCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE------cCCCC-HHHHHHHHHHc-ccc
Q 003302 108 GVRAFDLVLHDGSPN-VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV------FRSQD-YSSVLYCLKQL-FEK 178 (832)
Q Consensus 108 ~~~~FDlVlsDgapn-v~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV------Frs~d-~~~ll~~L~~~-F~~ 178 (832)
.+||+|+||++-. ..| .-| .+...+..+++|+|||.++-=+ +|+.+ +..++..|++. |..
T Consensus 204 --~sfDaIiHDPPRfS~Ag----eLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 204 --ESFDAIIHDPPRFSLAG----ELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred --cccceEeeCCCccchhh----hHh-----HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 6789999998521 111 111 1345567889999999998533 33333 34566777766 876
Q ss_pred eEEe
Q 003302 179 VEVD 182 (832)
Q Consensus 179 V~~~ 182 (832)
|...
T Consensus 273 v~~~ 276 (287)
T COG2521 273 VKKV 276 (287)
T ss_pred eeee
Confidence 6654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=83.87 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++.. ++.|+|+|+++.. ....+.++.+|+..... .. .+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~ 113 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA-------EH---PG 113 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh-------hc---CC
Confidence 36789999999999999888875 4589999999631 01135566666654210 01 16
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.||+|++...... ..+ ...+|..+.++|+|||+|++..+.
T Consensus 114 ~fD~Ii~~~~l~~----~~~-------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEH----VPD-------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhc----cCC-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 7899998643211 111 134577889999999999986553
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=80.36 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.++.+|.|+|||-+.+++.+ +....|...||.+..+ . ++.+||...+. .+ +.+|+|++.-+
T Consensus 71 ~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~n~--~--Vtacdia~vPL--------~~---~svDv~VfcLS 131 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAPNP--R--VTACDIANVPL--------ED---ESVDVAVFCLS 131 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------S---EEEEESS-SST--T--EEES-TTS-S----------T---T-EEEEEEES-
T ss_pred CCCEEEEECCCchHHHHHhc----ccCceEEEeeccCCCC--C--EEEecCccCcC--------CC---CceeEEEEEhh
Confidence 45679999999999877544 3345799999998754 3 46799988663 33 66799998876
Q ss_pred CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--CCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEE
Q 003302 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--QDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLL 197 (832)
Q Consensus 121 pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvV 197 (832)
. +|..| ...|.+|.++|+|||.|.|---.+ .+...++..+..+ |..+.. ..+.-.|++
T Consensus 132 L-MGTn~-----------~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~-------d~~n~~F~~ 192 (219)
T PF05148_consen 132 L-MGTNW-----------PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK-------DESNKHFVL 192 (219)
T ss_dssp ---SS-H-----------HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE-------E--STTEEE
T ss_pred h-hCCCc-----------HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec-------ccCCCeEEE
Confidence 4 23333 245679999999999998843333 3567777888776 544432 123347888
Q ss_pred EeeccCC
Q 003302 198 GIKYKAP 204 (832)
Q Consensus 198 c~gfk~p 204 (832)
+...+..
T Consensus 193 f~F~K~~ 199 (219)
T PF05148_consen 193 FEFKKIR 199 (219)
T ss_dssp EEEEE-S
T ss_pred EEEEEcC
Confidence 7777665
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=81.74 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.+. ...|++||+++-. .+.++.++++|+... + .. ..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-----l----~~-~~ 119 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-----L----AQ-PG 119 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-----H----hh-cC
Confidence 356799999999999998654443 3589999999621 244688888887532 1 11 11
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..||+|++||+... +. . ..+..+|.. ..+|.|+|.+++.....
T Consensus 120 ~~fDlV~~DPPy~~-g~-~-------~~~l~~l~~-~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 120 TPHNVVFVDPPFRK-GL-L-------EETINLLED-NGWLADEALIYVESEVE 162 (199)
T ss_pred CCceEEEECCCCCC-Ch-H-------HHHHHHHHH-CCCcCCCcEEEEEecCC
Confidence 46899999986322 11 1 112233322 35689999999865443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=85.16 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||.|+|+|.++.+|+..+++.++|+.+|+.+-. .+.+ |++..+|+++.. ..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~---------~~- 161 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI---------DE- 161 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---------cc-
Confidence 5789999999999999999999988888999999998621 2333 788889988742 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccce
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKV 179 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V 179 (832)
..||+|+.|.+ ..| .+|..+..+|+|||.+++-+-.......+...|..+ |..+
T Consensus 162 --~~vDav~LDmp----~PW------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 162 --EDVDAVFLDLP----DPW------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred --cccCEEEEcCC----ChH------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 46799999974 112 345678899999999987332222233344455544 5544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-05 Score=83.16 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|..+||++||.||.+..++..+++.+.|+|+|.++.. ...++.++++|+.+.. ..+.. ...
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~------~~l~~-~~~ 89 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK------EVLAE-GLG 89 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH------HHHHc-CCC
Confidence 3678899999999999999999998777899999999731 1246889999988743 22322 123
Q ss_pred cccEEEeCC
Q 003302 111 AFDLVLHDG 119 (832)
Q Consensus 111 ~FDlVlsDg 119 (832)
.||.|+.|.
T Consensus 90 ~vDgIl~DL 98 (296)
T PRK00050 90 KVDGILLDL 98 (296)
T ss_pred ccCEEEECC
Confidence 679999985
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=82.17 Aligned_cols=104 Identities=13% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
...+||+|||.|.|+..+|...| +..++|||+... ..++|+.++++|+... +...+.. ++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-----l~~~~~~---~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-----LRRLFPP---GS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----HHHHSTT---TS
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----HhhcccC---Cc
Confidence 34899999999999999999987 689999999852 1578999999999873 2233433 56
Q ss_pred ccEEEeCCCCCCCCCchhHHh-HHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAM-SQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+|-|..+-+ + -|..... ...-+....|....++|+|||.|.+.+
T Consensus 89 v~~i~i~FP-D---PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 89 VDRIYINFP-D---PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEEEEEES---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hheEEEeCC-C---CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 688877643 1 1322111 111112455678899999999997743
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=79.38 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C----CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P----IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|..|+|||||||.++..++-+ + .+.|+|||+.|-. + .-+|.++.+|+++.. +.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~--------------~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR--------------GK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC--------------Cc
Confidence 5788999999999998877655 3 4699999999731 1 225899999999853 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCL 172 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L 172 (832)
||+|+.||++. .|.. +.. ...+..+|..+ .+|.+++......-+....
T Consensus 109 ~dtvimNPPFG---~~~r-haD-r~Fl~~Ale~s--------~vVYsiH~a~~~~f~~~~~ 156 (198)
T COG2263 109 FDTVIMNPPFG---SQRR-HAD-RPFLLKALEIS--------DVVYSIHKAGSRDFVEKFA 156 (198)
T ss_pred cceEEECCCCc---cccc-cCC-HHHHHHHHHhh--------heEEEeeccccHHHHHHHH
Confidence 79999998754 3311 111 12334555444 5667788777544333333
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.7e-06 Score=84.49 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=77.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCce-EEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAV-SLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.||++|||||.--.+.-. .+...|+++|.++ |. ..+++. |+.++..+++- |.+ +++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-------l~d---~s~ 146 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-------LAD---GSY 146 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-------ccc---CCe
Confidence 479999999986544322 1578999999997 32 234666 77887776431 223 677
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccc
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~ 178 (832)
|+|++-... . -+.+ ...+|....++|+|||.+++--+-...|.-+..+++++++.
T Consensus 147 DtVV~TlvL--C--Sve~-------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 147 DTVVCTLVL--C--SVED-------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred eeEEEEEEE--e--ccCC-------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 999985310 1 1122 24678899999999999998777776777778888887765
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.2e-05 Score=82.50 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=84.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEE----EccCCChhHHHHHHHHHhh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSL----EQDITKPECRARVKKVMEE 106 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i----~gDIt~~~~~~~l~~~L~~ 106 (832)
+..+||||||+|+++..++..+| .+.|+|||+++.+ .+.| +..+ ++|...+.. +.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-------l~- 219 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-------LL- 219 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-------cc-
Confidence 44799999999999999999998 7899999999732 1223 3333 334433210 11
Q ss_pred ccCCcccEEEeCCCCCCCCCch---------hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcC-CCC-HHHH
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWA---------QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFR-SQD-YSSV 168 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~---------~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFr-s~d-~~~l 168 (832)
.+..|+++||++ .+...-. .+.. .........+..|+++|+|||.+.+.+-. ... +-.-
T Consensus 220 --~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~ 296 (328)
T KOG2904|consen 220 --EGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVR 296 (328)
T ss_pred --cCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHH
Confidence 267799999984 2211100 0000 01122345677899999999999986542 222 2211
Q ss_pred HHH---HHHcccceEEecCCCCCCCCcceeEEE
Q 003302 169 LYC---LKQLFEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 169 l~~---L~~~F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
.|+ +.-+|..+.++...+.|+ +||+.
T Consensus 297 ~~m~s~~~d~~~~~~v~~Df~~~~----Rfv~i 325 (328)
T KOG2904|consen 297 IWMISLKDDSNGKAAVVSDFAGRP----RFVII 325 (328)
T ss_pred HHHHhchhhccchhheeecccCCc----ceEEE
Confidence 222 223466677766666664 56554
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-05 Score=84.73 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+||++|+|+|..+.+++..+|.++.|+++|.++.. .+ ..|.++.+|+... |........
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-----L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-----LKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-----HHHHHhccc
Confidence 457899999999999999999999888899999999731 23 3588888987642 222111111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|+.|+.. ..+ ...+..+..+|+|||.+|+
T Consensus 192 ~~~FD~VFIDa~K--------~~Y------~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 192 GSSYDFAFVDADK--------RMY------QDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCcEEEE
Confidence 2579999999742 112 2345667899999999997
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.6e-05 Score=76.00 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=94.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCC--CceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIR--GAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
...|+++|||+|..+..|+....+++..+++|++|.+ ... ++..++.|+.+- +.. +++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~---------l~~---~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG---------LRN---ESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh---------hcc---CCc
Confidence 4679999999999999999999889999999999853 112 345666666541 222 566
Q ss_pred cEEEeCCCCCCCC------CchhHHhH----HhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 113 DLVLHDGSPNVGG------AWAQEAMS----QNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 113 DlVlsDgapnv~g------~w~~D~~~----q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
|+++.|++..... .|.-.++. ....+...+...-.+|.|.|+|.+-..+.....+++..++.. |....+
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 9999998532211 11111111 112345666777889999999999777777778888877765 433222
Q ss_pred ecCCCCCCCCcceeEEEeec
Q 003302 182 DKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 182 ~KP~sSR~~SaEiyvVc~gf 201 (832)
-.|....|...|...+
T Consensus 192 ----~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 192 ----MQRKAGGETLSILKFT 207 (209)
T ss_pred ----EEEecCCceEEEEEEE
Confidence 3455555666665544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=86.82 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-C--CCceEEE-ccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-I--RGAVSLE-QDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-i--~~V~~i~-gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+|||+|||.|.++..++..- ...|+|||.++.. . + ....+.. .-+.+ +.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~----------Lp~--~ 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED----------LPN--L 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----------ccc--c
Confidence 58899999999999999988773 3489999998742 1 1 1111111 11222 111 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+|-|-.. +-.++ ...|..+...|+|||.+|+.+
T Consensus 181 ~~FDtVF~MGVLY----Hrr~P-------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 GAFDTVFSMGVLY----HRRSP-------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CCcCEEEEeeehh----ccCCH-------HHHHHHHHHhhCCCCEEEEEE
Confidence 6799999977422 12222 356677889999999999754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=81.93 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=81.4
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEc
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQ 89 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~g 89 (832)
|..=+++-+..++ +.||.+||+.|+|+|+++.+|++.+++.++|+.+|+..- ..+. +|++.+.
T Consensus 25 YpkD~~~I~~~l~-----i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~ 99 (247)
T PF08704_consen 25 YPKDISYILMRLD-----IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR 99 (247)
T ss_dssp -HHHHHHHHHHTT-------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred eCchHHHHHHHcC-----CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence 4444555555432 689999999999999999999999988999999999852 1243 6888999
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhc-ccCcEEEEEEcCCCCHHHH
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFL-APKGTFVTKVFRSQDYSSV 168 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~L-kpGG~fV~KVFrs~d~~~l 168 (832)
|+..... .......||.|+.|.+ .-|. ++..+..+| +|||.|++-+-.-.....+
T Consensus 100 Dv~~~g~--------~~~~~~~~DavfLDlp----~Pw~------------~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 100 DVCEEGF--------DEELESDFDAVFLDLP----DPWE------------AIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp -GGCG----------STT-TTSEEEEEEESS----SGGG------------GHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred ceecccc--------cccccCcccEEEEeCC----CHHH------------HHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 9976431 1000156799999974 1232 345678899 8999998632221122233
Q ss_pred HHHHHHc-ccceEEe
Q 003302 169 LYCLKQL-FEKVEVD 182 (832)
Q Consensus 169 l~~L~~~-F~~V~~~ 182 (832)
+..|+.+ |..|.++
T Consensus 156 ~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 156 VEALREHGFTDIETV 170 (247)
T ss_dssp HHHHHHTTEEEEEEE
T ss_pred HHHHHHCCCeeeEEE
Confidence 4445543 6666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.4e-05 Score=86.81 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.... . . ..+..
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~-~--~~~~~-- 365 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-T-D--QPWAL-- 365 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-h-h--hhhhc--
Confidence 3577899999999999999999873 58999999972 13457899999986421 0 0 00111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++|++- . |.+ ..+. ++.-|+|++.++++.
T Consensus 366 -~~fD~Vi~dPPr-~-g~~------------~~~~-~l~~~~~~~ivyvSC 400 (443)
T PRK13168 366 -GGFDKVLLDPPR-A-GAA------------EVMQ-ALAKLGPKRIVYVSC 400 (443)
T ss_pred -CCCCEEEECcCC-c-ChH------------HHHH-HHHhcCCCeEEEEEe
Confidence 468999999752 1 211 1121 222368988877754
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.8e-05 Score=80.78 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+||++|||+|.-+-++++..+ +|+.|++.+- ..+.||.++++|-..- |+
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G------------~~ 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG------------WP 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC------------CC
Confidence 57899999999999999999999853 9999999862 1466899999998762 22
Q ss_pred -CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 -VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 -~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||.|+..++... .++ ...+.|++||++|+=|
T Consensus 135 ~~aPyD~I~Vtaaa~~----vP~-------------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPE----VPE-------------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCC----CCH-------------HHHHhcccCCEEEEEE
Confidence 278999999886331 111 2357899999999844
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.2e-05 Score=91.04 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----C-------------CCCceEEEccCCChhHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----P-------------IRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----~-------------i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
++..+|||||||+|+++..++++ +...+|++||+++.. . .|++.++.+|....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-------- 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-------- 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH--------
Confidence 45679999999999999888875 433699999998620 1 15677888887542
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc----CCCCHHHHHHHHHHc-c
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF----RSQDYSSVLYCLKQL-F 176 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF----rs~d~~~ll~~L~~~-F 176 (832)
+... ..+||+|++|.+... ...... -.....++.+.+.|+|||.|++... +...+..+...+++. |
T Consensus 367 -l~~~-~~~fDvIi~D~~~~~----~~~~~~--L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 367 -LRKL-AEKFDVIIVDLPDPS----NPALGK--LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred -HHhC-CCCCCEEEEeCCCCC----Ccchhc--cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 1111 157899999964211 110000 0113456778899999999998532 222344555666666 6
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=81.20 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++.++.+|||+|||+|.++..++... ...++|||+++- . ...++.++++|+.+.. . .+.. ++||+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l-----~-~~~~---~sfD~ 78 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGL-----E-AFPD---KSFDY 78 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc-----c-ccCC---CCcCE
Confidence 35678899999999999999887654 347899999972 1 2346788888876410 0 0111 57899
Q ss_pred EEeCCC
Q 003302 115 VLHDGS 120 (832)
Q Consensus 115 VlsDga 120 (832)
|+++.+
T Consensus 79 Vi~~~~ 84 (194)
T TIGR02081 79 VILSQT 84 (194)
T ss_pred EEEhhH
Confidence 999864
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=82.25 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+..+||++||+.|.-+.+++..+|.+++|+.||+++-. .+ ..|.++.+|..+. +.........
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-----l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-----LPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH-----HHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh-----HHHHHhccCC
Confidence 46799999999999999999999989999999999721 22 3588889887642 2222222223
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|+.|+.. ..+ ...+..+..+|+|||.+|+-
T Consensus 120 ~~fD~VFiDa~K--------~~y------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADK--------RNY------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTG--------GGH------HHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccc--------cch------hhHHHHHhhhccCCeEEEEc
Confidence 689999999742 112 12344567899999999983
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=83.38 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++.. ...|+|||+++ +. ..+++.++++|+..... .
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~-------------~ 90 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL-------------P 90 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc-------------h
Confidence 357889999999999999999987 35899999996 21 24578999999986431 3
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.||+|++|.+.+
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 469999998654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=80.70 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++- ..+.++.++++|+.+.. . .. .+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~-----~-~~----~~ 239 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA-----T-AQ----GE 239 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH-----H-hc----CC
Confidence 4689999999999999999984 468999999962 13457899999986531 0 01 14
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.||+|++|++
T Consensus 240 ~~D~Vv~dPP 249 (315)
T PRK03522 240 VPDLVLVNPP 249 (315)
T ss_pred CCeEEEECCC
Confidence 5899999975
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.5e-05 Score=78.14 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|+|+++ +. .. .++.++++|+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------------- 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-------------- 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--------------
Confidence 46789999999999999999876 34799999986 21 12 3578888885321
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
.+.||+|++...
T Consensus 125 ~~~fD~v~~~~~ 136 (230)
T PRK07580 125 LGRFDTVVCLDV 136 (230)
T ss_pred cCCcCEEEEcch
Confidence 166899998653
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=79.47 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CC-CceEEE-ccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IR-GAVSLE-QDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~-~V~~i~-gDIt~~~~~~~l~~~L~~~ 107 (832)
.+.+|||||||+|++...++...+ +..|+|+|+++.. + +. .|.+++ .|..+. +...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-----~~~i~~-- 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-----FKGIIH-- 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-----hhcccc--
Confidence 457899999999999888887765 6799999999731 1 22 244433 332221 011111
Q ss_pred cCCcccEEEeCCCCCCCCCc----hhHHhH-----------------H---------hHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAW----AQEAMS-----------------Q---------NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w----~~D~~~-----------------q---------~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+.||+|+||+++..+..- ...... . ..++...+..+..++...|+|.+
T Consensus 186 ~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwfts 265 (321)
T PRK11727 186 KNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTS 265 (321)
T ss_pred cCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEE
Confidence 12578999999975543321 000000 0 02234556677777788888887
Q ss_pred EEcCCCCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 158 KVFRSQDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 158 KVFrs~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
.+-...+...+...|..+ +..+.++........ ..+||=.|..
T Consensus 266 mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~---~~~vaWsf~~ 309 (321)
T PRK11727 266 LVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQ---SRFIAWTFLD 309 (321)
T ss_pred EeeccCCHHHHHHHHHHcCCceEEEEEEeCCCee---eEEEEeecCC
Confidence 666666777888888765 445666654443332 3456666654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.1e-05 Score=82.36 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------C--------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------P--------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~--------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
++.+|||||||+|.++..++.. +..|+|+|+++ |. . ..++.+.++|+...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----------
Confidence 5789999999999999999875 46899999997 31 1 12356677776432
Q ss_pred hccCCcccEEEeCC
Q 003302 106 EHGVRAFDLVLHDG 119 (832)
Q Consensus 106 ~~~~~~FDlVlsDg 119 (832)
. +.||+|+|..
T Consensus 210 ~---~~fD~Vv~~~ 220 (315)
T PLN02585 210 S---GKYDTVTCLD 220 (315)
T ss_pred C---CCcCEEEEcC
Confidence 1 6789999864
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=79.56 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
...+||-||+|.|+.+..+.++.+ ...|+.|||++.. + -|++.++.+|.... + ..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L----~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----L----EK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----H----hh
Confidence 457899999999999988877544 4689999999721 1 25688888887642 2 11
Q ss_pred ccCCcccEEEeCCC-CCCCCCchhHHhHHhHHHHHHHH-HHHhhcccCcEEEEEEcCC------CCHHHHHHHHHHcccc
Q 003302 107 HGVRAFDLVLHDGS-PNVGGAWAQEAMSQNALVIDSVK-LATQFLAPKGTFVTKVFRS------QDYSSVLYCLKQLFEK 178 (832)
Q Consensus 107 ~~~~~FDlVlsDga-pnv~g~w~~D~~~q~~L~~~aLk-~A~~~LkpGG~fV~KVFrs------~d~~~ll~~L~~~F~~ 178 (832)
....||+|++|.. |..++. ..++. ....+. .+.+.|+|||.||+-.-.. ..+..+...|.+.|..
T Consensus 173 -~~~~yDvIi~D~~dp~~~~~--~~~Ly----t~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 173 -RDEKFDVIIGDLADPVEGGP--CYQLY----TKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred -CCCCccEEEecCCCccccCc--chhhc----cHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 1267899999963 111111 00010 123455 6789999999999853221 1234566778888988
Q ss_pred eEEecC-CCCCCCCcceeEEEee
Q 003302 179 VEVDKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 179 V~~~KP-~sSR~~SaEiyvVc~g 200 (832)
|..+.- ..|- .+.-.|++|-.
T Consensus 246 v~~y~~~vPsf-~~~w~f~~aS~ 267 (336)
T PLN02823 246 VVPYTAHVPSF-ADTWGWVMASD 267 (336)
T ss_pred EEEEEeecCCC-CCceEEEEEeC
Confidence 877642 2222 23356777643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=74.65 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--CC-------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|.+||=|||++|.-..|++.-++ .+.|+||+.+| +. .-+|+..+.+|.+.+.....+. .
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~V--------e 144 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLV--------E 144 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhc--------c
Confidence 57899999999999999999999998 78999999997 21 3578999999999987654332 5
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+|+|++|.+- + .| ..-+...|..||++||.+++.
T Consensus 145 ~VDviy~DVAQ-------p---~Q---a~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 145 KVDVIYQDVAQ-------P---NQ---AEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccEEEEecCC-------c---hH---HHHHHHHHHHhcccCCeEEEE
Confidence 56999999751 1 12 133566889999999977653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=76.62 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCC---CC--ceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPI---RG--AVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i---~~--V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.-|||+|||+|--+.++..- +..++|||+|| |..+ .. -.++.+|+-.. ++- ..++||-||
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~G---------lpf-rpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELEGDLILCDMGEG---------LPF-RPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC---------CCC-CCCccceEE
Confidence 567999999999988888764 56899999998 5321 11 23456665432 111 238999999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHH----HHHHccc-ceEEecCCCCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY----CLKQLFE-KVEVDKPAASRSA 190 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~----~L~~~F~-~V~~~KP~sSR~~ 190 (832)
+-.|..+-.+-+........-+...+...+.+|++|+.+|+..+.... ..+-- .+..-|. -+.+--|-+.|+.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~-~q~d~i~~~a~~aGF~GGlvVd~Pes~k~k 195 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE-AQIDMIMQQAMKAGFGGGLVVDWPESTKNK 195 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch-HHHHHHHHHHHhhccCCceeeecccccccc
Confidence 988753221100000000111345667788999999999996665433 33222 2233344 4455456666654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=75.50 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+|||||||+|+++..++.+. ...|++||+++-. .+. ++.++++|+... +...... .
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-----l~~~~~~--~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-----LKFLAKK--P 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-----HHHhhcc--C
Confidence 57899999999999999998873 3489999999621 222 477888887542 1111111 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+.||+... .+... +...+ .-..+|.+||.+|+...+
T Consensus 120 ~~~dvv~~DPPy~~--~~~~~-------~l~~l-~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 120 TFDNVIYLDPPFFN--GALQA-------LLELC-ENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCceEEEECcCCCC--CcHHH-------HHHHH-HHCCCCCCCeEEEEEecC
Confidence 24799999976432 11111 11222 224679999998885443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=75.68 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
...+|.|+|||-+-+++ . ....|+.+||.+.. -.++.+||++.+. .+ +++|++++..+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~~----~~V~~cDm~~vPl--------~d---~svDvaV~CLSL 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAVN----ERVIACDMRNVPL--------ED---ESVDVAVFCLSL 238 (325)
T ss_pred CceEEEecccchhhhhh----c--cccceeeeeeecCC----CceeeccccCCcC--------cc---CcccEEEeeHhh
Confidence 45789999999997655 1 23479999998863 3456889988652 33 667999986553
Q ss_pred CCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--CCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEEE
Q 003302 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--QDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 122 nv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
. |.. +...++.|.++|++||.+.|--..+ .+...+...|..+ |... ++..+...|++.
T Consensus 239 M-gtn-----------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~-------~~d~~n~~F~lf 299 (325)
T KOG3045|consen 239 M-GTN-----------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK-------HKDVSNKYFTLF 299 (325)
T ss_pred h-ccc-----------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee-------ehhhhcceEEEE
Confidence 2 222 2356789999999999998854433 2334455555544 5433 334555677777
Q ss_pred eeccCCC
Q 003302 199 IKYKAPA 205 (832)
Q Consensus 199 ~gfk~p~ 205 (832)
..++.|.
T Consensus 300 efkK~~~ 306 (325)
T KOG3045|consen 300 EFKKTPK 306 (325)
T ss_pred EEecCCc
Confidence 7777663
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2e-05 Score=82.25 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
-.++||||||||-.+..+.... ..++|||||. |.....- -++.+.-....+...+......+||+|++--
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~e----Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-- 196 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHE----KGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-- 196 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHh----ccchHHHHHHHHHHHhhhccCCcccchhhhh--
Confidence 3689999999999998887763 3799999997 4321110 0111111111111123222237789998632
Q ss_pred CCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 122 nv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
-+.-+.-+..++-.+..+|.|||.|.+++-...+
T Consensus 197 ---------Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 197 ---------VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred ---------HHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 1221222355677889999999999998754443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00022 Score=72.71 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=71.8
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCC--------EEEEEeCCCCC-----------CC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGS--------LVLGLDLVPIA-----------PI 81 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~--------~ViGVDLsp~~-----------~i 81 (832)
..+..-|+-|+.+.. ..++..|||-+||+|++..-++....... .++|+|+++-. .+
T Consensus 11 ~L~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 11 PLRPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp SS-HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 345666777776532 36788999999999999987766544322 38999999621 22
Q ss_pred C-CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 82 R-GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 82 ~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
. .+.+.+.|++.+. +.. +.||+|++|++. |...........|....+..+.++|++...++
T Consensus 87 ~~~i~~~~~D~~~l~--------~~~---~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 87 EDYIDFIQWDARELP--------LPD---GSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp CGGEEEEE--GGGGG--------GTT---SBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CCceEEEecchhhcc--------ccc---CCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 2 3677888998864 112 677999999863 33222222334666778889999999933333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=78.30 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||+|||+|.++..++...+ .|+|||+++-. ..+++.++++|+...... .
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-------------~ 91 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-------------D 91 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-------------H
Confidence 5678999999999999999998863 69999999721 136788999999875421 2
Q ss_pred cc---EEEeCCCC
Q 003302 112 FD---LVLHDGSP 121 (832)
Q Consensus 112 FD---lVlsDgap 121 (832)
|| +|++|.+.
T Consensus 92 ~d~~~~vvsNlPy 104 (253)
T TIGR00755 92 FPKQLKVVSNLPY 104 (253)
T ss_pred cCCcceEEEcCCh
Confidence 34 89998753
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.1e-05 Score=77.65 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+||||+||+|+++.-++.+- ...|+.||.++-. .+. .+.++.+|.... +..... ..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-----l~~~~~--~~ 112 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-----LLKLAK--KG 112 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-----HHHHHH--CT
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-----HHhhcc--cC
Confidence 57899999999999998777762 4699999999631 222 367778876542 111111 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..||+|+.||+... +.+ + ..++..| .-..+|.++|.+|+.....
T Consensus 113 ~~fDiIflDPPY~~-~~~----~---~~~l~~l-~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIFLDPPYAK-GLY----Y---EELLELL-AENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp S-EEEEEE--STTS-CHH----H---HHHHHHH-HHTTSEEEEEEEEEEEETT
T ss_pred CCceEEEECCCccc-chH----H---HHHHHHH-HHCCCCCCCEEEEEEecCC
Confidence 67899999975332 111 0 1112222 1248999999999966444
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.2e-05 Score=79.52 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--C---------------------CCCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--P---------------------IRGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--~---------------------i~~V~~i~gDIt~~~~~ 97 (832)
.++.+||..|||.|.-+.+|+.. +..|+|||+++.. . -.+++++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 45689999999999999999886 5689999999631 0 12578899999986421
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. ...+.||+|+--++... .+. .+....+..+..+|+|||++++.+|
T Consensus 119 ~--------~~~~~fD~VyDra~~~A----lpp-----~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 119 A--------NNLPVFDIWYDRGAYIA----LPN-----DLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred c--------cccCCcCeeeeehhHhc----CCH-----HHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 0 01257899886654211 011 2234556678899999999998665
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.5e-05 Score=81.48 Aligned_cols=69 Identities=19% Similarity=0.368 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++.. ...|+|||+++ +. . .+++.++++|+....
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~------------ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE------------ 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc------------
Confidence 357889999999999999999886 35899999996 21 1 356899999987532
Q ss_pred cCCcccEEEeCCCCCCC
Q 003302 108 GVRAFDLVLHDGSPNVG 124 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~ 124 (832)
...||+|++|.+.+.+
T Consensus 99 -~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -FPYFDVCVANVPYQIS 114 (294)
T ss_pred -ccccCEEEecCCcccC
Confidence 1456999999876654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=72.33 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
..|.-||+||.|+|.++-.+..++-....+++|+.++- ...+++.++.||..++.+. +...+-..||+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~------l~e~~gq~~D~ 120 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT------LGEHKGQFFDS 120 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH------HhhcCCCeeee
Confidence 56778999999999999999988877788999999972 3568888999999885432 33333356899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|+|-.+.- +..... ....|..+...|.+||.||.-.+.+.+
T Consensus 121 viS~lPll-----~~P~~~----~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 121 VISGLPLL-----NFPMHR----RIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred EEeccccc-----cCcHHH----HHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 99964311 111111 235566778899999999986665443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00031 Score=80.75 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+... +.. +.. .
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-----l~~-~~~-~ 359 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-----LPK-QPW-A 359 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-----HHH-HHh-c
Confidence 3567899999999999999999863 48999999962 1356799999998642 111 110 1
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
...||+|+.|++
T Consensus 360 ~~~~D~vi~dPP 371 (431)
T TIGR00479 360 GQIPDVLLLDPP 371 (431)
T ss_pred CCCCCEEEECcC
Confidence 145899999985
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=75.92 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C---------------CCCceEEEccCCChhH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P---------------IRGAVSLEQDITKPEC 96 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~---------------i~~V~~i~gDIt~~~~ 96 (832)
..++.+||..|||.|.-+..|+.. +..|+|||+++.. . ..+|+++++|+.++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 456779999999999999999986 5699999999631 0 1246889999998541
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE--EEEEEc
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT--FVTKVF 160 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~--fV~KVF 160 (832)
...++||+|+=-++... ..+ .+...-...+..+|+|||+ +++..|
T Consensus 112 ----------~~~g~fD~iyDr~~l~A-----lpp----~~R~~Ya~~l~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 112 ----------EDVGKFDLIYDRTFLCA-----LPP----EMRERYAQQLASLLKPGGRGLLITLEY 158 (218)
T ss_dssp ----------SCHHSEEEEEECSSTTT-----S-G----GGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred ----------hhcCCceEEEEeccccc-----CCH----HHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence 11267899997664321 111 1122344567899999999 555444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=79.66 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++- ..+.++.++++|+.+.. .. + ..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~-----~~-~----~~ 299 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA-----TA-Q----MS 299 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH-----Hh-c----CC
Confidence 4679999999999999988854 468999999972 13457889999986531 00 1 13
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+.||+- . |.. ..++..+ ..++|++.+++..
T Consensus 300 ~~D~vi~DPPr-~-G~~-----------~~~l~~l-~~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPR-R-GIG-----------KELCDYL-SQMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCC-C-CCc-----------HHHHHHH-HhcCCCeEEEEEe
Confidence 57999999753 2 211 1111222 2478988777743
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00034 Score=74.92 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc-c
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH-G 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~-~ 108 (832)
+..+||+||++.|.-+.+++..+|++++|++||+++-. .+ ..|.+++||..+ .|....... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-----~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-----VLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-----HHHHHHhcccc
Confidence 56799999999999999999989889999999999721 22 458888888654 122222111 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.++||+|+.|+.. ..+ ...+..+..+|+|||.+|+
T Consensus 154 ~~~fD~iFiDadK--------~~Y------~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 154 HGTFDFIFVDADK--------DNY------INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCcccEEEecCCH--------HHh------HHHHHHHHHhcCCCeEEEE
Confidence 1578999999742 222 2334567789999999997
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=75.04 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.+..+|||||+|.|.++..++...| +.+++.+|+-... ..++|.++.+|+.++ + + . +|+|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---------~---P-~-~D~~ 162 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---------L---P-V-ADVY 162 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------C---S-S-ESEE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhccccccccccccccHHhh---------h---c-c-ccce
Confidence 45667899999999999999999987 6799999996432 256799999999853 1 1 2 7999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC--cEEEEE
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK--GTFVTK 158 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG--G~fV~K 158 (832)
+... +--.|..+ .+..+|+.+...|+|| |++++.
T Consensus 163 ~l~~---vLh~~~d~------~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRH---VLHDWSDE------DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEES---SGGGS-HH------HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeeh---hhhhcchH------HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 9853 22224332 3567889999999999 999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=79.21 Aligned_cols=110 Identities=17% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhC------CCCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRV------PVGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~------p~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l 100 (832)
..++.+|+|.|||+|+|+..+..++ .....++|+|+++.. .+ ....+.++|.......
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~--- 120 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF--- 120 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC---
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc---
Confidence 3567789999999999998887754 235689999998631 11 1234667776543210
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHh------H-----HhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM------S-----QNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~------~-----q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. ....||+|++||+++.. .|..... . ....-...+..+...|++||.+++-+
T Consensus 121 ----~--~~~~~D~ii~NPPf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 121 ----I--KNQKFDVIIGNPPFGSK-EWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp ----T--ST--EEEEEEE--CTCE-S-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----c--cccccccccCCCCcccc-ccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 0 12578999999876543 1211110 0 00111235677899999999987744
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00038 Score=71.37 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+||||+||+|+.+.-++.+. ...++.||.+.-. ...++.++..|.+. . +. .+.. .
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~---L~-~~~~--~ 112 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--A---LK-QLGT--R 112 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--H---HH-hcCC--C
Confidence 47899999999999998887763 4689999998521 12457777777762 1 11 1211 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+.||+.+. +.+... +...+ -.-..+|+|||.+||....
T Consensus 113 ~~FDlVflDPPy~~-~l~~~~------~~~~~-~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 113 EPFDLVFLDPPYAK-GLLDKE------LALLL-LEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CcccEEEeCCCCcc-chhhHH------HHHHH-HHhcCCcCCCcEEEEEeCC
Confidence 34999999987542 222111 11111 1245789999999996543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00018 Score=75.78 Aligned_cols=140 Identities=17% Similarity=0.232 Sum_probs=86.0
Q ss_pred CchHHHHHHhcCchhHHHHHHHhhhhhcCCCC-CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC--------
Q 003302 10 LDKYYRLAKEHGYRSRASWKLVQLDSKFSFLR-SSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-------- 79 (832)
Q Consensus 10 ~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~-~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-------- 79 (832)
-|.||..-+..-+..|-|. +.+...-+..-. +..+||++|||-|....-+.+..+. +-.|+++|.+|-+
T Consensus 39 wD~fy~~~~~rFfkdR~wL-~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNWL-LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSS 117 (264)
T ss_pred hhhhhhhccccccchhHHH-HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcc
Confidence 3556655555555555543 112111122111 2237999999999987777776653 3689999999832
Q ss_pred --CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 80 --PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 80 --~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+..+..|++.+. +...+ ..+.+|.|++--. -..-.++. ...++..+..+|+|||.+++
T Consensus 118 ~~~e~~~~afv~Dlt~~~----~~~~~---~~~svD~it~IFv---LSAi~pek------~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPS----LKEPP---EEGSVDIITLIFV---LSAIHPEK------MQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ccchhhhcccceeccchh----ccCCC---CcCccceEEEEEE---EeccChHH------HHHHHHHHHHHhCCCcEEEE
Confidence 1235777888998865 11112 2377899887531 11112222 34688899999999999999
Q ss_pred EEcCCCCHH
Q 003302 158 KVFRSQDYS 166 (832)
Q Consensus 158 KVFrs~d~~ 166 (832)
.-|...+..
T Consensus 182 rDYg~~Dla 190 (264)
T KOG2361|consen 182 RDYGRYDLA 190 (264)
T ss_pred eecccchHH
Confidence 877766644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00057 Score=71.87 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEc-cCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQ-DITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~g-DIt~~~~~~~l~~~L~~~ 107 (832)
.++.+||++|++.|.-+.+++..+|.++++|.||+++-. .+.+ |..+.+ |..+ .+.. +
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~-----~l~~-~--- 128 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD-----VLSR-L--- 128 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH-----HHHh-c---
Confidence 467899999999999999999999988899999999721 2323 666664 5433 2222 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..++||+|+.|.... .+ ...+..+..+|+|||.+|+
T Consensus 129 ~~~~fDliFIDadK~--------~y------p~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 129 LDGSFDLVFIDADKA--------DY------PEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cCCCccEEEEeCChh--------hC------HHHHHHHHHHhCCCcEEEE
Confidence 238899999997531 11 2345577889999999998
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00023 Score=69.67 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=59.9
Q ss_pred hhHHHHH-HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CC----CCceEEEccC
Q 003302 23 RSRASWK-LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PI----RGAVSLEQDI 91 (832)
Q Consensus 23 rsRaafK-Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i----~~V~~i~gDI 91 (832)
|+..|-. |.-|...|+-+. |..++|||||.|-.+... .|+....|+|+||.|-. +. -++.++|+||
T Consensus 29 ~p~iAasM~~~Ih~TygdiE-gkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi 105 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIE-GKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI 105 (185)
T ss_pred cHHHHHHHHHHHHhhhcccc-CcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec
Confidence 3333444 344566676443 689999999999988443 45567799999999832 11 2467899999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
+++.. .+ +.||.++.|+++.
T Consensus 106 ldle~--------~~---g~fDtaviNppFG 125 (185)
T KOG3420|consen 106 LDLEL--------KG---GIFDTAVINPPFG 125 (185)
T ss_pred cchhc--------cC---CeEeeEEecCCCC
Confidence 98642 22 7899999998754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0003 Score=76.14 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CC--CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PI--RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|.++..++.+. ..|+|||+++. . .+ +++.++++|+....... + .
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~-----~------~ 105 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE-----L------Q 105 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH-----c------C
Confidence 4577899999999999999999884 38999999972 1 12 57999999998754211 0 1
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+++|++|.+.+
T Consensus 106 ~~~vv~NlPY~ 116 (272)
T PRK00274 106 PLKVVANLPYN 116 (272)
T ss_pred cceEEEeCCcc
Confidence 48999997643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00021 Score=74.17 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
++.+|..|||++||-|.|+..++...+ ...|+|+|++|.. .+.+ +..+++|..+.. .
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---------~- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---------P- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------------
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc---------C-
Confidence 467899999999999999999998644 5799999999732 2333 678899987642 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
...||.|+++.++.. ...|..++.++++||++.
T Consensus 167 --~~~~drvim~lp~~~---------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPESS---------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSG---------------GGGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHHH---------------HHHHHHHHHHhcCCcEEE
Confidence 166799999764321 112345778899998874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00037 Score=73.74 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=68.9
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
..+|++|||-|.|+..+|...| ...++||++..- ..++|+..+++|++.. +...+.+ +++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-----l~~~~~~---~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-----LDYLIPD---GSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-----HHhcCCC---CCe
Confidence 5899999999999999999987 568999999852 1456888899988752 2222222 355
Q ss_pred cEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|-|..+-+- -|... |....-+....|....++|+|||.|.+++
T Consensus 121 ~~I~i~FPD----PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 121 DKIYINFPD----PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred eEEEEECCC----CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 766665421 13221 11111112455678899999999998743
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00067 Score=73.53 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC-----------CCCCc-eEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-----------PIRGA-VSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-----------~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
..-+|||+|||+|-...-+....|. ...|.-+|.++++ .+.++ .|.++|+.+......+ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l----~--- 207 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL----D--- 207 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc----C---
Confidence 3468999999999988777777664 3578889999853 35665 8999999986543221 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
...++++..|- .+-|.-..++..+|.-+..+|.|||++|.
T Consensus 208 -p~P~l~iVsGL--------~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 208 -PAPTLAIVSGL--------YELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred -CCCCEEEEecc--------hhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 33488887663 33344556777888889999999999976
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=69.15 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC----CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI----RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i----~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.++||||.-||.-+...|-.+|.+++|+++|+++-. .. ..|+++++.... .|.+.+.....
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-----sLd~l~~~~~~ 147 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-----SLDELLADGES 147 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-----hHHHHHhcCCC
Confidence 46799999999999999999999999999999999732 11 236777776543 34455555456
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++||+|+.|. | .+.+. .-+..++++||+||.+++
T Consensus 148 ~tfDfaFvDa-------d-K~nY~------~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 148 GTFDFAFVDA-------D-KDNYS------NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred CceeEEEEcc-------c-hHHHH------HHHHHHHhhcccccEEEE
Confidence 8999999985 2 22222 223467899999999997
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00038 Score=73.43 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+..+||+||..|..++.+++..+ ...|+||||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccH
Confidence 46799999999999999999987 45799999996
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00056 Score=80.68 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-------CCEEEEEeCCCCC---------CCC--CceEEEccCCChhHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPV-------GSLVLGLDLVPIA---------PIR--GAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~-------~~~ViGVDLsp~~---------~i~--~V~~i~gDIt~~~~~~~l~~~ 103 (832)
...+|||.|||+|+|+..++.+++. ...|+|+|+++.. ... ++.+.+.|....... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~-----~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL-----N 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-----c
Confidence 4568999999999999988877641 2468999998632 111 233344443321100 0
Q ss_pred HhhccCCcccEEEeCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgap 121 (832)
.. ...+.||+|++||+.
T Consensus 106 ~~-~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 106 IE-SYLDLFDIVITNPPY 122 (524)
T ss_pred cc-cccCcccEEEeCCCc
Confidence 00 112578999999864
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00084 Score=74.32 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCC-ceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRG-AVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+-++.+|||+|||+|.+++.+|+.. ..+|+|||-+.|. .+.+ |++++|.+.+.. |+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--------LP--- 124 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--------LP--- 124 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--------cC---
Confidence 3468899999999999999988874 5689999999764 2334 677888777643 22
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
...+|+|+|.-. |.|..- ...+..+|-.=-++|+|||.++
T Consensus 125 ~eKVDiIvSEWM----Gy~Ll~----EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEWM----GYFLLY----ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ccceeEEeehhh----hHHHHH----hhhhhhhhhhhhhccCCCceEc
Confidence 256799998622 222221 1122334444457899999875
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=65.97 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..++.+||+||||+|-.+.+++...+ ...|+..|..+.. ....|.+...|+.+... ...+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~----~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELD----SDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HH----HHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccc----cccccc
Confidence 45678999999999998888888743 5689999998731 11346666777765321 112222
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-CCCCHHHHHHHH
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-RSQDYSSVLYCL 172 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-rs~d~~~ll~~L 172 (832)
..||+|++.-. .+.... ....+..+..+|.|+|.+++..- |......++..+
T Consensus 118 ---~~~D~IlasDv-----~Y~~~~------~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~ 170 (173)
T PF10294_consen 118 ---HSFDVILASDV-----LYDEEL------FEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRL 170 (173)
T ss_dssp ---SSBSEEEEES-------S-GGG------HHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH
T ss_pred ---ccCCEEEEecc-----cchHHH------HHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHh
Confidence 57899997421 122221 23455667789999998766432 433333444443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00074 Score=76.75 Aligned_cols=89 Identities=21% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|||++||+|.++..++...+ ...|+++|+++.. .+.++.++++|+... +.. ...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---------l~~--~~~ 125 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---------LHE--ERK 125 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH---------Hhh--cCC
Confidence 46899999999999999988765 3589999999721 344566778887442 110 156
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|+.|+. |.. ...+..|...+++||.+.+.
T Consensus 126 fD~V~lDP~----Gs~-----------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 126 FDVVDIDPF----GSP-----------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCEEEECCC----CCc-----------HHHHHHHHHHhcCCCEEEEE
Confidence 899999973 211 12344567788999999986
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00031 Score=70.72 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=59.5
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc-
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA- 111 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~- 111 (832)
.|||+|||-||-+..+|... ..|+|||++|.. . ..+|.++++|+.+.. .......
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---------~~~~~~~~ 69 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---------KRLKSNKI 69 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG---------GGB-----
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH---------hhcccccc
Confidence 69999999999999999874 489999999842 1 246899999987632 1111111
Q ss_pred ccEEEeCCCCCCCCC-chh-HHhHH----hH-HHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGA-WAQ-EAMSQ----NA-LVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 112 FDlVlsDgapnv~g~-w~~-D~~~q----~~-L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
||+|+++|+ +||. +.. +.+.. .. -+..+++.+..+ -..+++...|+.+..+|..+...
T Consensus 70 ~D~vFlSPP--WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 70 FDVVFLSPP--WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp -SEEEE-----BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT---
T ss_pred ccEEEECCC--CCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHhcc
Confidence 699999863 4442 111 11111 01 012333333322 34567767788888877655443
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0076 Score=65.88 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=84.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+||-||-|.|+++..++++.+ -.+|+.|||++.. + -|++..+.+|.... +....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---------v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---------LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---------HHhCC
Confidence 5999999999999999999876 4599999999621 1 25677777776542 22211
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC-----HHHHHHHHHHcccceEEec
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD-----YSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d-----~~~ll~~L~~~F~~V~~~K 183 (832)
..||+|++|.....|..-.+ .....++.+.++|+++|+||+-. .+.. +..+...+...|..+..+-
T Consensus 148 -~~fDvIi~D~tdp~gp~~~L-------ft~eFy~~~~~~L~~~Gi~v~q~-~~~~~~~~~~~~~~~~~~~vf~~~~~~~ 218 (282)
T COG0421 148 -EKFDVIIVDSTDPVGPAEAL-------FTEEFYEGCRRALKEDGIFVAQA-GSPFLQDEEIALAYRNVSRVFSIVPPYV 218 (282)
T ss_pred -CcCCEEEEcCCCCCCccccc-------CCHHHHHHHHHhcCCCcEEEEec-CCcccchHHHHHHHHHHHhhccccccce
Confidence 46899999975333211111 11345667899999999999852 2222 1233344555565544322
Q ss_pred -CCCCCCCCcceeEEEeec
Q 003302 184 -PAASRSASAEIYLLGIKY 201 (832)
Q Consensus 184 -P~sSR~~SaEiyvVc~gf 201 (832)
|...-.+.-..|+++-..
T Consensus 219 ~~ipt~~~g~~~f~~~s~~ 237 (282)
T COG0421 219 APIPTYPSGFWGFIVASFN 237 (282)
T ss_pred eccceecCCceEEEEeecC
Confidence 122222223456665533
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00085 Score=78.96 Aligned_cols=104 Identities=12% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
..+..+||+|||.|.|+..+|...| ...++|||+... ..+.|+.++.+|+.. +...+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~------~~~~~~~--- 415 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL------ILNDLPN--- 415 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH------HHHhcCc---
Confidence 3578999999999999999999987 679999999852 145677777665432 3334444
Q ss_pred CcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+++|.|..+-+ .-|... |....-.....|....++|+|||.|.+.
T Consensus 416 ~sv~~i~i~FP----DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 416 NSLDGIYILFP----DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ccccEEEEECC----CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 45688877643 123221 1111111245567889999999999873
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0024 Score=62.36 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 42 SSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 42 ~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
++.+|||+|||+|. ++..|++. +..|+|||+++-. ....+.++++|++++... .. ..+|+|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~-----~y-----~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE-----IY-----KNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH-----HH-----hcCCEEE
Confidence 46789999999996 88888754 5699999999842 123578899999987521 11 4569999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+--+| .+|+..++.+|..+ |..|+++.+.+..
T Consensus 83 sirpp-------------~el~~~~~~la~~~---~~~~~i~~l~~e~ 114 (134)
T PRK04148 83 SIRPP-------------RDLQPFILELAKKI---NVPLIIKPLSGEE 114 (134)
T ss_pred EeCCC-------------HHHHHHHHHHHHHc---CCCEEEEcCCCCC
Confidence 86443 13445566666654 8888887666553
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00047 Score=79.84 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.+|+|+|||+|.++..+++.. ....+|+||+-++++ .. ..|+++++|+++....
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp--------- 256 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP--------- 256 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---------
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---------
Confidence 35789999999999987665542 224599999999842 12 3589999999986532
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..+|+|+|--. | ..-.. ++....|..+.++|+|||.++
T Consensus 257 ---ekvDIIVSElL---G-sfg~n-----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 ---EKVDIIVSELL---G-SFGDN-----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---S-EEEEEE------B-TTBTT-----TSHHHHHHHGGGGEEEEEEEE
T ss_pred ---CceeEEEEecc---C-Ccccc-----ccCHHHHHHHHhhcCCCCEEe
Confidence 46699999743 1 11111 122334556788999999987
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=69.92 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=65.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----CCCCceEEEc--cCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----PIRGAVSLEQ--DITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----~i~~V~~i~g--DIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
..++|+|||+|--++.++.+.. .|||+|+++ |. ..+++++... -+.+.. +...+.. -.++|+|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g~--e~SVDlI~ 105 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLGG--EESVDLIT 105 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccCC--Ccceeeeh
Confidence 3899999999977788887743 799999997 32 2333332211 011100 0011111 26779999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc-EEEEEEcCC--CCHHHHHHHHHHccc
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG-TFVTKVFRS--QDYSSVLYCLKQLFE 177 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG-~fV~KVFrs--~d~~~ll~~L~~~F~ 177 (832)
|--+ .+|. + +..+++.|.++||+.| ++.+=.++. ..+..+..+|..+..
T Consensus 106 ~Aqa----~HWF-d-------le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 106 AAQA----VHWF-D-------LERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhh----HHhh-c-------hHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 8533 1332 1 2456778999998866 666655552 234555555555443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=66.81 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||=||-|.|+.+..+.++.+ ...|++|||++.. .-|++.++.+|.... +.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~---------l~ 144 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF---------LK 144 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH---------HH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH---------HH
Confidence 3568999999999999988887643 4689999999731 135788888886542 22
Q ss_pred hccCC-cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC----HHHHHHHHHHcccceE
Q 003302 106 EHGVR-AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD----YSSVLYCLKQLFEKVE 180 (832)
Q Consensus 106 ~~~~~-~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d----~~~ll~~L~~~F~~V~ 180 (832)
... . .||+|+.|.....+.... -+ ....+..+.+.|+|||.|++-...... +..+...|+..|..|.
T Consensus 145 ~~~-~~~yDvIi~D~~dp~~~~~~--l~-----t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 145 ETQ-EEKYDVIIVDLTDPDGPAPN--LF-----TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp TSS-ST-EEEEEEESSSTTSCGGG--GS-----SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEE
T ss_pred hcc-CCcccEEEEeCCCCCCCccc--cc-----CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceE
Confidence 222 4 799999997532211111 11 235567889999999999986532221 2334456777788665
Q ss_pred Eec-CCCCCCCCcceeEEEeecc
Q 003302 181 VDK-PAASRSASAEIYLLGIKYK 202 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~gfk 202 (832)
.+. +..+-...--.|++|.+-.
T Consensus 217 ~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 217 PYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp EEEEECTTSCSSEEEEEEEESST
T ss_pred EEEEEcCeecccceeEEEEeCCC
Confidence 432 3333333334566665544
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00095 Score=71.04 Aligned_cols=84 Identities=29% Similarity=0.300 Sum_probs=62.0
Q ss_pred chhHHHHHHHhhhhhcC-------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEEcc
Q 003302 22 YRSRASWKLVQLDSKFS-------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLEQD 90 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~-------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~gD 90 (832)
.-||+..||-+....|- -|.+|+..+||||+||||+-.|.++ +-.|++||-.+|.+ .+.|+....|
T Consensus 184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~sL~dtg~v~h~r~D 260 (358)
T COG2933 184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQSLMDTGQVTHLRED 260 (358)
T ss_pred CCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhhhhhcccceeeeecc
Confidence 45899999887544443 2568999999999999999888776 56899999999864 2447777777
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
-..... ....+|-.+||+
T Consensus 261 Gfk~~P-----------~r~~idWmVCDm 278 (358)
T COG2933 261 GFKFRP-----------TRSNIDWMVCDM 278 (358)
T ss_pred Cccccc-----------CCCCCceEEeeh
Confidence 654321 014569999997
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=67.17 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCEEEEEcCCcCHHHHHHH---HhCCCCCEEEEEeCCC--CC-------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAV---QRVPVGSLVLGLDLVP--IA-------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La---~~~p~~~~ViGVDLsp--~~-------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
...||++|.+-||=+...| ..++..++|+|||+.. .. | .++|++++||.+++.....+......
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~--- 109 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP--- 109 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS------
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc---
Confidence 4799999999999665554 4555578999999942 11 1 26799999999998876554433322
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+|+-|+. +..++ ++..|..-..+|.+|+++|+
T Consensus 110 ~~~vlVilDs~------H~~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSS------HTHEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCC------ccHHH------HHHHHHHhCccCCCCCEEEE
Confidence 23368888863 22222 34566778899999999997
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0027 Score=71.46 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=39.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCCh
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKP 94 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~ 94 (832)
.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999998874 38999999962 1355788999998653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0034 Score=70.89 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=49.0
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHH-----hh-
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVM-----EE- 106 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L-----~~- 106 (832)
.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.+.- ..+.... ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT--QAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--HHHhhcccccccccc
Confidence 579999999999999888763 48999999962 13457889999986531 1111000 00
Q ss_pred -ccCCcccEEEeCCC
Q 003302 107 -HGVRAFDLVLHDGS 120 (832)
Q Consensus 107 -~~~~~FDlVlsDga 120 (832)
.....||+|+.||+
T Consensus 283 ~~~~~~~D~v~lDPP 297 (362)
T PRK05031 283 DLKSYNFSTIFVDPP 297 (362)
T ss_pred cccCCCCCEEEECCC
Confidence 00124799999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=69.83 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=60.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
..++||||||-|+.+..++.... .|++.++|+ |. .-.+.+.+.. .+.. . ....||+|.|-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~~vl~~--~~w~----------~-~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGFTVLDI--DDWQ----------Q-TDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCCeEEeh--hhhh----------c-cCCceEEEeeh
Confidence 46799999999999999998764 799999998 43 2345544422 2211 0 01568999983
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+ .|.-. -....|..+...|+|+|.+|+-+
T Consensus 159 ---Nv-----LDRc~---~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 ---NV-----LDRCD---RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---hh-----hhccC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 32 22211 12456777889999999999854
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=60.78 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEcCCcCHHHHHHHHhCCCCC--EEEEEeCCCC---C-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGS--LVLGLDLVPI---A-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~--~ViGVDLsp~---~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|++|++.|..+.+++..++... ++++||..+. . .+ .++.+++++..+. +. .+.. ++||
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----l~-~~~~---~~~d 71 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF-----LP-SLPD---GPID 71 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHH-----HH-HHHH-----EE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH-----HH-HcCC---CCEE
Confidence 6899999999988888776654 7999999982 1 11 3588889987542 11 2222 6789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.||.. .. .-+...+..+...|+|||.+|+
T Consensus 72 li~iDg~H------~~------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 72 LIFIDGDH------SY------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEEES---------H------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCCC------CH------HHHHHHHHHHHHHcCCCeEEEE
Confidence 99999742 11 1234567788999999999886
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=64.48 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------------CCCCceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------------PIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------------~i~~V~~i~gDIt~~~~~~~ 99 (832)
+.++.+++|||||.|.....++-..+ ..+.+||++.+.. ....+.+.++|+++......
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 57889999999999998766665544 4579999999621 12346788999998664332
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+ +. .+ |+|++|.- ..++ .| ...|...+..|++|-.+|+
T Consensus 119 ~---~s--~A---dvVf~Nn~-------~F~~----~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 I---WS--DA---DVVFVNNT-------CFDP----DL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp H---GH--C----SEEEE--T-------TT-H----HH-HHHHHHHHTTS-TT-EEEE
T ss_pred h---hc--CC---CEEEEecc-------ccCH----HH-HHHHHHHHhcCCCCCEEEE
Confidence 2 21 23 99999842 1121 12 2344556677888877775
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0066 Score=67.86 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
...|.+|||+-||-|.|+..+|.+..+ .|+|+||+|-. .+.+ +..++||....... +
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~------~--- 254 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE------L--- 254 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc------c---
Confidence 456999999999999999999988542 49999999831 3344 78899998764211 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+.||.|+.+-+.. ....+-.|+.+|++||++.+-.|...
T Consensus 255 --~~aDrIim~~p~~---------------a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 255 --GVADRIIMGLPKS---------------AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --ccCCEEEeCCCCc---------------chhhHHHHHHHhhcCcEEEEEeccch
Confidence 4569999875421 12334568889999999988665544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0016 Score=67.65 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEeCCCCC---------------------CCCCceEEEccCCChhH
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSL-VLGLDLVPIA---------------------PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~-ViGVDLsp~~---------------------~i~~V~~i~gDIt~~~~ 96 (832)
.|+||...||+|.|+|.++.+++..++..+. ++|||+-+-. ....+.++.+|.....
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~- 157 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY- 157 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-
Confidence 3789999999999999999999977766555 4999887521 0123455666655421
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
....+||.|.+-++. + ......+..|++||.+++=+
T Consensus 158 ----------~e~a~YDaIhvGAaa-------~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 158 ----------AEQAPYDAIHVGAAA-------S----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ----------CccCCcceEEEccCc-------c----------ccHHHHHHhhccCCeEEEee
Confidence 112567888775321 1 11224568899999998733
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0053 Score=63.91 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCC-EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCc-eEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSH-AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGA-VSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~-~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V-~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
|.... +||+||||||--+.+++..+| .....-.|+.+.. ..+|+ .-+..|++.....-.... .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~---~ 97 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA---P 97 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc---c
Confidence 44444 599999999999999999998 3455555665421 23342 234567776521100000 0
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.....||.|+|-- .-|......+...+..|.++|++||.|++
T Consensus 98 ~~~~~~D~i~~~N---------~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 98 LSPESFDAIFCIN---------MLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred cCCCCcceeeehh---------HHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 0125789999852 22333344567788899999999999986
|
The function of this family is unknown. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.005 Score=69.85 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=63.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+|||+.||+|..+..++...+....|+++|+++.. .+.++.++++|+... +.. . ...|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~-----l~~-~----~~~f 115 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV-----LRY-R----NRKF 115 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-----HHH-h----CCCC
Confidence 589999999999999998876434689999999731 234567777776542 111 1 1468
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|..|+ +. . .. ..+..|...+++||.+.+.
T Consensus 116 DvIdlDP-fG---s--~~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 116 HVIDIDP-FG---T--PA---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CEEEeCC-CC---C--cH---------HHHHHHHHhcccCCEEEEE
Confidence 9999997 32 1 11 2344677889999999875
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=64.07 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCCCCCCC-EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSH-AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~-~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+.++.... +|+|+|+|.|-=+..++=..| ...|+.||.+.- ..+.||.++++.+.+..
T Consensus 42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--------- 111 (184)
T PF02527_consen 42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE--------- 111 (184)
T ss_dssp GGCS-CCCSEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT---------
T ss_pred hhhhccCCceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc---------
Confidence 33455444 899999999987777777776 678999999852 15788999998876511
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
....||+|++-+-.. +...+..+..+|++||.|++ +.+..+
T Consensus 112 ---~~~~fd~v~aRAv~~---------------l~~l~~~~~~~l~~~G~~l~--~KG~~~ 152 (184)
T PF02527_consen 112 ---YRESFDVVTARAVAP---------------LDKLLELARPLLKPGGRLLA--YKGPDA 152 (184)
T ss_dssp ---TTT-EEEEEEESSSS---------------HHHHHHHHGGGEEEEEEEEE--EESS--
T ss_pred ---cCCCccEEEeehhcC---------------HHHHHHHHHHhcCCCCEEEE--EcCCCh
Confidence 127889999986311 12455678899999999986 455543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0032 Score=68.99 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----------C-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----------I-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----------i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..|||+|||.|.++..+++.. ..+|++|+-+.|.. + .+++++-|-|.+...+ .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP------------E 242 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP------------E 242 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc------------h
Confidence 47899999999999999888763 45899999998742 1 3467777777665422 4
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE---Ec-CCCC--------HHHHHHHHHHcccc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK---VF-RSQD--------YSSVLYCLKQLFEK 178 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VF-rs~d--------~~~ll~~L~~~F~~ 178 (832)
.+|+|++.+. |.....+. .+...-.|.++|+|.|.+.-. ++ .++. ++....-.++.|-.
T Consensus 243 k~DviISEPM---G~mL~NER------MLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyG 313 (517)
T KOG1500|consen 243 KVDVIISEPM---GYMLVNER------MLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYG 313 (517)
T ss_pred hccEEEeccc---hhhhhhHH------HHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhcccc
Confidence 5599999864 21111111 123333578999999987632 22 2222 11112223455666
Q ss_pred eEEecCCCCCCCCcceeEEEeeccCC--CCCCCCccchhhhcccC
Q 003302 179 VEVDKPAASRSASAEIYLLGIKYKAP--AKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~gfk~p--~~id~~~ldp~~vf~~~ 221 (832)
|.++ |...-. +-.-|+-| +.+|+|++=...||-.+
T Consensus 314 VdLt-~L~g~a-------~~eYFrQPvVDtFD~RilmA~sv~h~~ 350 (517)
T KOG1500|consen 314 VDLT-PLYGSA-------HQEYFRQPVVDTFDIRILMAKSVFHVI 350 (517)
T ss_pred ccch-hhhhhh-------hhhhhccccccccccceeeccchHhhh
Confidence 7665 322111 11224444 45778888777776554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.016 Score=62.66 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+...+||=+|.|-||.+.-++++ + ..|+-|||.+.. .-|++..+.. +.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--------------~~ 133 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--------------LL 133 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--------------hh
Confidence 44588999999999999988887 2 399999998621 1244444421 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC----CCCHHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR----SQDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr----s~d~~~ll~~L~~~F~~V~~ 181 (832)
....+.||+|++|..+. . ...+.+.+.|+|||.||+..-. ...+..+...++..|..|..
T Consensus 134 ~~~~~~fDVIIvDs~~~------~----------~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~ 197 (262)
T PRK00536 134 DLDIKKYDLIICLQEPD------I----------HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMP 197 (262)
T ss_pred hccCCcCCEEEEcCCCC------h----------HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEE
Confidence 11125789999996432 1 2234678999999999984322 22234555666677875544
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0035 Score=64.04 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=64.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
..+.|||+|+|.++.++++. .-+|++|+..|-. ...++.++.+|..+... ...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-------------e~A 97 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-------------ENA 97 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-------------ccc
Confidence 67999999999999999887 3489999999831 13458889999987531 233
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+|-+ .|..-..+-+..++..++.+|+..|++|-
T Consensus 98 DvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 98 DVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 9999975 22222122234567778889999999874
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.031 Score=62.25 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=78.0
Q ss_pred chhHHHHHHHhhhhh--cCCCCCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCC---------CC--CCCCce
Q 003302 22 YRSRASWKLVQLDSK--FSFLRSSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVP---------IA--PIRGAV 85 (832)
Q Consensus 22 yrsRaafKLiqi~~k--f~fl~~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp---------~~--~i~~V~ 85 (832)
|-.|.-..|++-... -..+.++..+||||||.|..+..|...+. .....++||+|. +. .+|++.
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 566666665543211 11356778999999999999877766553 235799999994 11 356654
Q ss_pred E--EEccCCChhHHHHHHHHHhh-ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh-hcccCcEEEEEEcC
Q 003302 86 S--LEQDITKPECRARVKKVMEE-HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ-FLAPKGTFVTKVFR 161 (832)
Q Consensus 86 ~--i~gDIt~~~~~~~l~~~L~~-~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~-~LkpGG~fV~KVFr 161 (832)
+ +++|+++.-. .+.. .......+|+.-|+- -|+..++. ....|+...+ .|.|||.|++-+=.
T Consensus 134 v~~l~gdy~~~l~------~l~~~~~~~~~r~~~flGSs--iGNf~~~e------a~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 134 CAGLLGTYDDGLA------WLKRPENRSRPTTILWLGSS--IGNFSRPE------AAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred EEEEEecHHHHHh------hcccccccCCccEEEEeCcc--ccCCCHHH------HHHHHHHHHHhhCCCCCEEEEecCC
Confidence 4 8899877421 1211 001234788887741 12222222 2345566677 99999999985533
Q ss_pred CCC
Q 003302 162 SQD 164 (832)
Q Consensus 162 s~d 164 (832)
..+
T Consensus 200 ~k~ 202 (319)
T TIGR03439 200 CKD 202 (319)
T ss_pred CCC
Confidence 333
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0021 Score=64.06 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 82 RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 82 ~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+|.++++|+.+.+. . .++||+|++... -+|..+ ...+|+.++++|+|||.|++-.|.
T Consensus 26 ~~i~~~~~d~~~lp~--------~---~~~fD~v~~~~~----l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 26 KCIEWIEGDAIDLPF--------D---DCEFDAVTMGYG----LRNVVD-------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CceEEEEechhhCCC--------C---CCCeeEEEecch----hhcCCC-------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 358999999987531 1 267899998642 122222 246788999999999999987776
Q ss_pred CCC
Q 003302 162 SQD 164 (832)
Q Consensus 162 s~d 164 (832)
..+
T Consensus 84 ~~~ 86 (160)
T PLN02232 84 KSN 86 (160)
T ss_pred CCC
Confidence 544
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.026 Score=59.44 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|+|+|+|+|-=+..++=..| +..|+-||...- ..++|+.++++.+.+.. .. ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----------~~--~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----------QE--KK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----------cc--cc
Confidence 58999999999977777664444 567999998752 25788999988776632 10 12
Q ss_pred -ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 112 -FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 -FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
||+|+|-+-.+ +...+..+..+|++||.|+.
T Consensus 135 ~~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 135 QYDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cCcEEEeehccc---------------hHHHHHHHHHhcccCCcchh
Confidence 89999986211 12345678899999999875
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0039 Score=64.02 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV 76 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs 76 (832)
|.+|+.|+||-.|-|.|+..++..+++.+.|+++=..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 6899999999999999999999999999999998444
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=61.21 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCEEEEEcCCcCH--H--HHHHHHhC----CCCCEEEEEeCCCCC---------------CC------------------
Q 003302 43 SHAVLDLCAAPGG--W--MQVAVQRV----PVGSLVLGLDLVPIA---------------PI------------------ 81 (832)
Q Consensus 43 g~~VLDLGcGPGg--~--sq~La~~~----p~~~~ViGVDLsp~~---------------~i------------------ 81 (832)
.-+|+-.||++|- + +.++.... +....|+|.|+++.. .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4689999999996 3 33444421 223589999999410 11
Q ss_pred ------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 82 ------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 82 ------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
..|.|.+.|+.+.. ...+.||+|+|- ||-- +-.......++...+..|+|||+|
T Consensus 112 v~~~lr~~V~F~~~NL~~~~-----------~~~~~fD~I~CR---NVlI------YF~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD-----------PPFGRFDLIFCR---NVLI------YFDPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------------EEEEEE----SSGG------GS-HHHHHHHHHHHGGGEEEEEEE
T ss_pred EChHHcCceEEEecccCCCC-----------cccCCccEEEec---CEEE------EeCHHHHHHHHHHHHHHcCCCCEE
Confidence 23667777777611 112788999997 3311 222234567888899999999999
Q ss_pred EE
Q 003302 156 VT 157 (832)
Q Consensus 156 V~ 157 (832)
++
T Consensus 172 ~l 173 (196)
T PF01739_consen 172 FL 173 (196)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0026 Score=66.69 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC------CCCC--ceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA------PIRG--AVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~------~i~~--V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.-..++||||+-|....++.... -.++|-+|-+. |. .-|. +.++.+|=..++ +.. .+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld--------f~e---ns 137 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD--------FKE---NS 137 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhccc--------ccc---cc
Confidence 344689999999999999988763 34788999886 32 1244 345667655433 222 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
||+|++..+ .+|..+-. ..+..|...|+|.|.|+..+|.+.++-.|...++
T Consensus 138 ~DLiisSls----lHW~NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLyELR~slq 188 (325)
T KOG2940|consen 138 VDLIISSLS----LHWTNDLP-------GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ 188 (325)
T ss_pred hhhhhhhhh----hhhhccCc-------hHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence 799999753 46665422 3445688899999999999999888666554443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0077 Score=69.68 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=45.4
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEc
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQ 89 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~g 89 (832)
+|+.+.....-+..+..+||+|||||.++..+++.. ..|+||+++|- +.+.|++|++|
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 455544445556788999999999999999999874 48999999973 13567899998
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0033 Score=72.64 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=54.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCC-CCceE--------EEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPI-RGAVS--------LEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i-~~V~~--------i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++||+|||.|+|+-+|..+ + |+.+-+.+.... ..+.| +.+-+.+. .|+ -+.+.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~--V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~--------rLP-fp~~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---N--VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQ--------RLP-FPSNAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC---C--ceEEEcccccCCchhhhhhhhcCcchhhhhhccc--------ccc-CCccchhh
Confidence 56999999999999988876 3 445544443211 11211 11111110 111 12378899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
|.|... .-.|....- ..|-.+-++|||||+||.+-..
T Consensus 185 vHcsrc---~i~W~~~~g-------~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 185 VHCSRC---LIPWHPNDG-------FLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccc---cccchhccc-------ceeehhhhhhccCceEEecCCc
Confidence 998643 223554321 1344678999999999986543
|
; GO: 0008168 methyltransferase activity |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.012 Score=65.07 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C--------C----------C-CceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P--------I----------R-GAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~--------i----------~-~V~~i~gDIt~~~~~~~ 99 (832)
..+|..|.|=-.|||++...++.. ++.|+|.||.-.. . + + -+.++.+|.+.++.+.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-
Confidence 579999999999999998888776 6799999998521 0 0 1 1446788888876432
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCC-------C-------------C--chhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVG-------G-------------A--WAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~-------g-------------~--w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
...||+|+||++..+- + . ....++....++...|..+.+.|.-||++|+
T Consensus 282 ---------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 282 ---------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred ---------cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 2567999999853220 0 0 0123344456677889999999999999998
Q ss_pred E
Q 003302 158 K 158 (832)
Q Consensus 158 K 158 (832)
-
T Consensus 353 w 353 (421)
T KOG2671|consen 353 W 353 (421)
T ss_pred e
Confidence 3
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.043 Score=63.53 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHH
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECR 97 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~ 97 (832)
+|++.-..|--..++.+||||=||.|.|++.+|.. ...|+||++++- +.+.|+.|..++.......
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 45544333333457789999999999999999965 459999999962 2466788888887653211
Q ss_pred HHHHHHHhhccCCcccEEEeCCC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDga 120 (832)
. +....||+|+.|++
T Consensus 357 ------~--~~~~~~d~VvvDPP 371 (432)
T COG2265 357 ------W--WEGYKPDVVVVDPP 371 (432)
T ss_pred ------c--cccCCCCEEEECCC
Confidence 1 01146799999974
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.013 Score=63.26 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++..||++|+|.|++|..|+++. ..|+||++.+. . ...+++.+++|+........+ .
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~----------~ 95 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA----------Q 95 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc----------C
Confidence 458899999999999999999984 48999999972 1 346799999999876532111 4
Q ss_pred ccEEEeCCCCCCC
Q 003302 112 FDLVLHDGSPNVG 124 (832)
Q Consensus 112 FDlVlsDgapnv~ 124 (832)
++.|++|-+.|.+
T Consensus 96 ~~~vVaNlPY~Is 108 (259)
T COG0030 96 PYKVVANLPYNIS 108 (259)
T ss_pred CCEEEEcCCCccc
Confidence 5999999876554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.031 Score=50.21 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=57.7
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CC--CC---ceEEEccCCCh--hHHHHHHHHHhhccCCcc
Q 003302 46 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PI--RG---AVSLEQDITKP--ECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i--~~---V~~i~gDIt~~--~~~~~l~~~L~~~~~~~F 112 (832)
|+|+|||+|.++ .+....+....++|+|+++.. .. .. +.++.+|.... . +.. ...|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~ 120 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--------FED--SASF 120 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--------CCC--CCce
Confidence 999999999987 555554433489999998621 01 11 45666666541 1 110 0257
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
|++.+.... .|.. ....+..+.++|+|||.|++..+...
T Consensus 121 d~~~~~~~~----~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 121 DLVISLLVL----HLLP--------PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eEEeeeeeh----hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 888333211 1111 23566778899999999998766543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0081 Score=67.63 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDIT 92 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt 92 (832)
.||||+||.|.|+..||... ..|+||++++- +.+.|+.|+.++..
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 79999999999999999874 58999999952 35778999987653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.016 Score=62.39 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCC---CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIR---GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~---~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++++..||++|.|||..|+.+.+. +.+|+||++.| |. ..| ...+++||+....
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d------------ 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD------------ 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC------------
Confidence 578899999999999999999987 56999999998 32 222 3678899987643
Q ss_pred cCCcccEEEeCCCCCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGG 125 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g 125 (832)
...||++++|-+++.++
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 15689999998766543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.053 Score=59.55 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=57.7
Q ss_pred CEEEEEcCCcCH--HH--HHHHHhCC---CCCEEEEEeCCCCC---------------CCC-------------------
Q 003302 44 HAVLDLCAAPGG--WM--QVAVQRVP---VGSLVLGLDLVPIA---------------PIR------------------- 82 (832)
Q Consensus 44 ~~VLDLGcGPGg--~s--q~La~~~p---~~~~ViGVDLsp~~---------------~i~------------------- 82 (832)
-+|+-.||++|- ++ ..+....+ ....|+|+|+++.. .+|
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999996 33 33444332 24579999999410 010
Q ss_pred --------CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE
Q 003302 83 --------GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT 154 (832)
Q Consensus 83 --------~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~ 154 (832)
.|.|.+.|+.+++. . ..+.||+|+|.- +-. +........++......|+|||+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~--------~--~~~~fD~I~cRN---vli------yF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW--------A--VPGPFDAIFCRN---VMI------YFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC--------c--cCCCcceeeHhh---HHh------cCCHHHHHHHHHHHHHHhCCCcE
Confidence 13444555544210 0 126789999952 111 11123346788889999999999
Q ss_pred EEE
Q 003302 155 FVT 157 (832)
Q Consensus 155 fV~ 157 (832)
|++
T Consensus 258 L~l 260 (287)
T PRK10611 258 LFA 260 (287)
T ss_pred EEE
Confidence 887
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=53.76 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred HHHHHHhcCc-hhH---HHHHHHhhhhhcCCCC----CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCc
Q 003302 13 YYRLAKEHGY-RSR---ASWKLVQLDSKFSFLR----SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGA 84 (832)
Q Consensus 13 yy~~Ake~gy-rsR---aafKLiqi~~kf~fl~----~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V 84 (832)
-|+.|-.+|- ..| ++-.|++-........ ..-++||+||-........ .+ --.|+.|||++. .|+|
T Consensus 14 ~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~-~fdvt~IDLns~--~~~I 87 (219)
T PF11968_consen 14 AYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SG-WFDVTRIDLNSQ--HPGI 87 (219)
T ss_pred HHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc---cC-ceeeEEeecCCC--CCCc
Confidence 3566655554 334 3444444333322211 2368999999855422211 11 235999999983 2333
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE-----EEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT-----FVTKV 159 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~-----fV~KV 159 (832)
++.|+...+. +....+.||+|.+..-.|+ ++++.. .-..|+.++.+|+|+|. |++-+
T Consensus 88 --~qqDFm~rpl--------p~~~~e~FdvIs~SLVLNf----VP~p~~----RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 88 --LQQDFMERPL--------PKNESEKFDVISLSLVLNF----VPDPKQ----RGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred --eeeccccCCC--------CCCcccceeEEEEEEEEee----CCCHHH----HHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 5677766432 1112378999999765443 333332 24567789999999999 66522
Q ss_pred cCC-------CCHHHHHHHHHHc-ccceEEe
Q 003302 160 FRS-------QDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 160 Frs-------~d~~~ll~~L~~~-F~~V~~~ 182 (832)
..+ .+...+..+|..+ |..++..
T Consensus 150 P~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 150 PLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 211 1223455566655 7666653
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.18 Score=55.43 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++...||.--|-||.++.+...++..+.++|+|-.|.. + ..+++++++++.+.. ..+.....+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~------~~l~~~~i~ 95 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA------EALKELGIG 95 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH------HHHHhcCCC
Confidence 567899999999999999999999988899999999721 2 246888998876643 223333346
Q ss_pred cccEEEeCC
Q 003302 111 AFDLVLHDG 119 (832)
Q Consensus 111 ~FDlVlsDg 119 (832)
.||-|+.|-
T Consensus 96 ~vDGiL~DL 104 (314)
T COG0275 96 KVDGILLDL 104 (314)
T ss_pred ceeEEEEec
Confidence 678887774
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.055 Score=62.87 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=73.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCC--CCceE------EEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPI--RGAVS------LEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i--~~V~~------i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.|+|+.||.|||+.+|... .|.-+.+.|.... -+|++ +.-|+.. .|.+- ..+||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE---------~fsTY-PRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCE---------AFSTY-PRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccchhccchhh---------ccCCC-Ccchhhe
Confidence 57999999999998877643 2444445543211 11222 2223221 11111 1678999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCccee
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIY 195 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiy 195 (832)
.+++-+. .+...+.+..+|-.+-++|||||++++.-.. .-...+..++..+--++.++- ...-+...|..
T Consensus 432 HA~~lfs--------~~~~rC~~~~illEmDRILRP~G~~iiRD~~-~vl~~v~~i~~~lrW~~~~~d-~e~g~~~~Eki 501 (506)
T PF03141_consen 432 HADGLFS--------LYKDRCEMEDILLEMDRILRPGGWVIIRDTV-DVLEKVKKIAKSLRWEVRIHD-TEDGPDGPEKI 501 (506)
T ss_pred ehhhhhh--------hhcccccHHHHHHHhHhhcCCCceEEEeccH-HHHHHHHHHHHhCcceEEEEe-cCCCCCCCceE
Confidence 9987432 1223355677788899999999999873110 012233344444434444442 23333446888
Q ss_pred EEEe
Q 003302 196 LLGI 199 (832)
Q Consensus 196 vVc~ 199 (832)
+||+
T Consensus 502 L~~~ 505 (506)
T PF03141_consen 502 LICQ 505 (506)
T ss_pred EEEE
Confidence 8886
|
; GO: 0008168 methyltransferase activity |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.037 Score=62.18 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|..|+|.||+||.-+.+++..+...++|.|+|+.+-. ....+..+.+|++...+. ..+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~---------~~~ 282 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP---------EKF 282 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc---------ccc
Confidence 468899999999999999999999989999999998631 223355567777663211 112
Q ss_pred CcccEEEeCCCCCCCCCchhHHh----------HHhHH---HHHHHHHHHhh--cccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAM----------SQNAL---VIDSVKLATQF--LAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~----------~q~~L---~~~aLk~A~~~--LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
..+-.|++|+++..+|.++...+ ....| +..++..|+.+ ++.=-+-.|.+++...-..+...+++
T Consensus 283 ~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~ 362 (413)
T KOG2360|consen 283 RDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ 362 (413)
T ss_pred cceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh
Confidence 45689999988776665432111 11111 12233333332 12112233456666655555566654
Q ss_pred c--ccceEE--ecCCCCCCCCcceeEEEeec
Q 003302 175 L--FEKVEV--DKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 175 ~--F~~V~~--~KP~sSR~~SaEiyvVc~gf 201 (832)
- |..+.. +-|-+++.+ .+-|-+.++.
T Consensus 363 ~p~~~~l~~kK~~p~w~~rg-~~~~~~~e~~ 392 (413)
T KOG2360|consen 363 NPDAKRLAPKKVLPAWPHRG-LSTFSGAEHC 392 (413)
T ss_pred ChhHhhhchhhcchhhhhcC-Cccccccccc
Confidence 4 334433 446666655 4455444443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.1 Score=56.46 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=73.6
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEc
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQ 89 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~g 89 (832)
|-.-.++.|..++ +.||.+||+-|+|.|+++-++++.+++.++++.+|.-... .++ +|++..-
T Consensus 90 Yt~Dia~I~~~L~-----i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 90 YTPDIAMILSMLE-----IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred ecccHHHHHHHhc-----CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe
Confidence 4445555554443 4799999999999999999999999999999999996532 233 5788888
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+...... ... ..+|.|+.|.+. -|. ++-.|..+|+.+|.-+|
T Consensus 165 DVc~~GF~------~ks---~~aDaVFLDlPa----Pw~------------AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 165 DVCGSGFL------IKS---LKADAVFLDLPA----PWE------------AIPHAAKILKDEGGRLC 207 (314)
T ss_pred ecccCCcc------ccc---cccceEEEcCCC----hhh------------hhhhhHHHhhhcCceEE
Confidence 88765432 112 556999999741 121 23345668888775444
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.097 Score=64.27 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---C--------------------------------------CCCEEEEEeCCCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---P--------------------------------------VGSLVLGLDLVPIA 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p--------------------------------------~~~~ViGVDLsp~~ 79 (832)
.++..++|.+||+|.++..++... + ....|+|+|+++-.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 467899999999999997776421 1 12369999999721
Q ss_pred -----------CCCC-ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh
Q 003302 80 -----------PIRG-AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ 147 (832)
Q Consensus 80 -----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~ 147 (832)
.+.+ |.+.++|+++.... . ..+.||+|++|++.. ..+ .+......| ...|...++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~------~---~~~~~d~IvtNPPYg--~r~-~~~~~l~~l-Y~~lg~~lk 335 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNP------L---PKGPTGLVISNPPYG--ERL-GEEPALIAL-YSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccc------c---ccCCCCEEEECCCCc--Ccc-CchHHHHHH-HHHHHHHHH
Confidence 2333 67889999874321 0 114579999997532 111 111111112 123444555
Q ss_pred hcccCcEEEE
Q 003302 148 FLAPKGTFVT 157 (832)
Q Consensus 148 ~LkpGG~fV~ 157 (832)
.+.+|+.+++
T Consensus 336 ~~~~g~~~~l 345 (702)
T PRK11783 336 QQFGGWNAAL 345 (702)
T ss_pred HhCCCCeEEE
Confidence 5558888865
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.11 Score=56.57 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 30 LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 30 Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
|.+|..+..-+.| .+|||+|||||..+..+...++.-..+++||.++
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~ 68 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP 68 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhcCceeeeeecCCH
Confidence 4455544433444 5899999999998888888777556799999997
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.077 Score=57.55 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=61.3
Q ss_pred CEEEEEcCCcC---HHHHHHHHhCCCCCEEEEEeCCCCC---------CCCC--ceEEEccCCChhHHH---HHHHHHhh
Q 003302 44 HAVLDLCAAPG---GWMQVAVQRVPVGSLVLGLDLVPIA---------PIRG--AVSLEQDITKPECRA---RVKKVMEE 106 (832)
Q Consensus 44 ~~VLDLGcGPG---g~sq~La~~~p~~~~ViGVDLsp~~---------~i~~--V~~i~gDIt~~~~~~---~l~~~L~~ 106 (832)
..+||||||-- ..=+++... .+.++|+-||..|+. .-++ ..++++|++++...- .+...|.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~-~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRV-APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH--TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhh-CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 56999999843 333444444 458999999999852 2355 789999999976431 12222221
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
..++=++++.. .+|..|.-. ...++......|.||.+|+++.+.......-...+..+|.
T Consensus 149 --~rPVavll~~v-----Lh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 149 --DRPVAVLLVAV-----LHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp --TS--EEEECT------GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred --CCCeeeeeeee-----eccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 12334444432 134444222 2356677889999999999988776543333344444443
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.1 Score=56.78 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCEEEEEcCCcCH----HHHHHHHhCCC----CCEEEEEeCCCCC---------C-------C-----------------
Q 003302 43 SHAVLDLCAAPGG----WMQVAVQRVPV----GSLVLGLDLVPIA---------P-------I----------------- 81 (832)
Q Consensus 43 g~~VLDLGcGPGg----~sq~La~~~p~----~~~ViGVDLsp~~---------~-------i----------------- 81 (832)
.-+|.-.||++|- .+..|.+.++. ...|+|.||+.-. + +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4689999999995 55666676652 5689999998310 0 0
Q ss_pred -------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE
Q 003302 82 -------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT 154 (832)
Q Consensus 82 -------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~ 154 (832)
..|.|-+.|+.+... ..+.||+|+|- ||-- ..+. .+...++...+..|+|||.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-----------~~~~fD~IfCR---NVLI--YFd~----~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-----------FLGKFDLIFCR---NVLI--YFDE----ETQERILRRFADSLKPGGL 236 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-----------ccCCCCEEEEc---ceEE--eeCH----HHHHHHHHHHHHHhCCCCE
Confidence 124444555554320 22679999996 3211 1222 3345677788999999999
Q ss_pred EEE
Q 003302 155 FVT 157 (832)
Q Consensus 155 fV~ 157 (832)
|++
T Consensus 237 Lfl 239 (268)
T COG1352 237 LFL 239 (268)
T ss_pred EEE
Confidence 997
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.043 Score=57.64 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..+|||.-||-||-+...+.. .+.|++||++|+. .+| .|+|+|||+.+.-. .++-.+ -
T Consensus 95 ~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~------~lq~~K-~ 164 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS------KLKADK-I 164 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH------HHhhhh-h
Confidence 356777777777765545444 3479999999852 234 58999999987421 121111 2
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+..|++.
T Consensus 165 ~~~~vf~sppwg 176 (263)
T KOG2730|consen 165 KYDCVFLSPPWG 176 (263)
T ss_pred eeeeeecCCCCC
Confidence 357888766543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.093 Score=58.09 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|..+||.=||-||-+..++..++. ++|+|+|.++.. +. .++.++++++.+.. ..+.....
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~------~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF------EHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH------HHHHhcCC
Confidence 357889999999999999999998874 899999999732 22 36888898887643 22322223
Q ss_pred CcccEEEeCC
Q 003302 110 RAFDLVLHDG 119 (832)
Q Consensus 110 ~~FDlVlsDg 119 (832)
..||.|+.|-
T Consensus 91 ~~vDgIl~DL 100 (305)
T TIGR00006 91 TKIDGILVDL 100 (305)
T ss_pred CcccEEEEec
Confidence 5679999985
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.16 Score=55.48 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=48.5
Q ss_pred ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCC-------CchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 84 AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG-------AWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 84 V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g-------~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..++++|+... + ..+.. ++||+|++|++.+.+. .|....+ ...+...|..+.++|+|||.|+
T Consensus 9 ~~i~~gD~~~~-----l-~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 9 KTIIHGDALTE-----L-KKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLF--IDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CEEEeccHHHH-----H-Hhccc---CcccEEEECCCcccccccccccccccHHHH--HHHHHHHHHHHHHHhCCCcEEE
Confidence 45677887652 1 22333 6789999999765421 2222222 2445678899999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHcc
Q 003302 157 TKVFRSQDYSSVLYCLKQLF 176 (832)
Q Consensus 157 ~KVFrs~d~~~ll~~L~~~F 176 (832)
+ ++.......+...+...|
T Consensus 78 i-~~~~~~~~~~~~~~~~~f 96 (284)
T PRK11524 78 I-MNSTENMPFIDLYCRKLF 96 (284)
T ss_pred E-EcCchhhhHHHHHHhcCc
Confidence 8 344333333333344333
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.098 Score=51.58 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=50.5
Q ss_pred EEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhH
Q 003302 69 LVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNA 136 (832)
Q Consensus 69 ~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~ 136 (832)
+|+|+|+++.+ .+ .+|++++..-.... ..++. +++|+|+-|-..-.||.. .......
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~------~~i~~---~~v~~~iFNLGYLPggDk--~i~T~~~ 69 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD------EYIPE---GPVDAAIFNLGYLPGGDK--SITTKPE 69 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG------GT--S-----EEEEEEEESB-CTS-T--TSB--HH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH------hhCcc---CCcCEEEEECCcCCCCCC--CCCcCcH
Confidence 58999999621 12 35888877655432 22222 467999988643334432 2233445
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 137 LVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 137 L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.++.+|..|+.+|+|||.+++.++.+..
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 6789999999999999999999998765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.13 Score=54.11 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CC-CCC-ceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------AP-IRG-AVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~-i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
-.++||+|||-|-.|..+. +|.--.|--||.++- .. .++ ..+++.-+.+.. +. .+.
T Consensus 56 ~~~alDcGAGIGRVTk~lL--l~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~---------P~--~~~ 122 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLL--LPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT---------PE--EGK 122 (218)
T ss_dssp -SEEEEET-TTTHHHHHTC--CCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------------TT-
T ss_pred cceEEecccccchhHHHHH--HHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---------CC--CCc
Confidence 4689999999999997553 233447777777751 01 123 344555444321 11 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|.+- |+.-+..-..| ...|+.|...|+|||.+|+|
T Consensus 123 YDlIW~Q--------W~lghLTD~dl-v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 123 YDLIWIQ--------WCLGHLTDEDL-VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEEEE--------S-GGGS-HHHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred EeEEEeh--------HhhccCCHHHH-HHHHHHHHHhCcCCcEEEEE
Confidence 8999984 77666554444 46788999999999999997
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.072 Score=57.22 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C----------C-CCceEEEccCCChhHHH
Q 003302 41 RSSH--AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P----------I-RGAVSLEQDITKPECRA 98 (832)
Q Consensus 41 ~~g~--~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~----------i-~~V~~i~gDIt~~~~~~ 98 (832)
++|. +|||+.||.|.-+.+++.+ ++.|++||-+|.. . + .++..+++|..+.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~---- 157 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---- 157 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH----
Confidence 4555 8999999999999999987 6689999999732 0 1 2355556665432
Q ss_pred HHHHHHhhccCCcccEEEeCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgap 121 (832)
|.... ..||+|+.|+++
T Consensus 158 -----L~~~~-~~fDVVYlDPMf 174 (250)
T PRK10742 158 -----LTDIT-PRPQVVYLDPMF 174 (250)
T ss_pred -----HhhCC-CCCcEEEECCCC
Confidence 22211 468999999864
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.22 Score=55.88 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----------------CCCCceEEEccCCChhHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----------------PIRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----------------~i~~V~~i~gDIt~~~~~~~l~ 101 (832)
+....+||=||.|.|--...+.++ |.-.+|+-||+.| |. .-|+|+++..|..++
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w------- 358 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW------- 358 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-------
Confidence 345678999999999888777765 5467999999998 21 125688888887653
Q ss_pred HHHhhccCCcccEEEeCCC-CCC---CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 102 KVMEEHGVRAFDLVLHDGS-PNV---GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDga-pnv---~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
++.. ...||+|+.|-+ |+. +-.++. ....++.+.|+++|.||+..-.+
T Consensus 359 --lr~a-~~~fD~vIVDl~DP~tps~~rlYS~----------eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 359 --LRTA-ADMFDVVIVDLPDPSTPSIGRLYSV----------EFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred --HHhh-cccccEEEEeCCCCCCcchhhhhhH----------HHHHHHHHhcCcCceEEEecCCC
Confidence 2222 257899999963 221 112222 23346789999999999854333
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.12 Score=56.15 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC---CCCc-eEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP---IRGA-VSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~---i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..|..++|.|||-|-.+.. . +.+.++|+|++.. .. -.+. ....+|+...+.+ . .+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~---~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~--------~---~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV---N--PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFR--------E---ESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcC---C--CcceeeecchhhhhccccccCCCceeehhhhhcCCCC--------C---Ccccc
Confidence 35689999999999975321 1 3568999999863 22 2233 4566677664321 1 56788
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+++-.. ..++.....-..++....+.|+|||...+-++
T Consensus 107 ~lsiav--------ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 107 ALSIAV--------IHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred chhhhh--------hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 876532 22344445557889999999999999877554
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.13 Score=60.48 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=70.6
Q ss_pred chhHHHHHHH-hhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCC-------C-CCCCce----
Q 003302 22 YRSRASWKLV-QLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPI-------A-PIRGAV---- 85 (832)
Q Consensus 22 yrsRaafKLi-qi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~-------~-~i~~V~---- 85 (832)
|-.|+.-+|+ ++.. ..+..+|.|-|||+||+...+..++.. ...++|.++++. . -+.++.
T Consensus 169 yTP~~v~~liv~~l~----~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 169 YTPREVSELIVELLD----PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CChHHHHHHHHHHcC----CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 5566666655 3321 246779999999999998888877753 367999998752 1 122332
Q ss_pred EEEccCC-ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHH-----------h-----HHhHHHHHHHHHHHhh
Q 003302 86 SLEQDIT-KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEA-----------M-----SQNALVIDSVKLATQF 148 (832)
Q Consensus 86 ~i~gDIt-~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~-----------~-----~q~~L~~~aLk~A~~~ 148 (832)
...+|-. ++..-. ....+.||+|+++++.+.. .|.... + .... -...+..+...
T Consensus 245 i~~~dtl~~~~~~~-------~~~~~~~D~viaNPPf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~af~~h~~~~ 315 (489)
T COG0286 245 IRHGDTLSNPKHDD-------KDDKGKFDFVIANPPFSGK-GWGGDLLESEQDERFFFYGVFPTKNSA-DLAFLQHILYK 315 (489)
T ss_pred ccccccccCCcccc-------cCCccceeEEEeCCCCCcc-ccccccccccccccccccCCCCCCCch-HHHHHHHHHHh
Confidence 2233322 221000 0112678999999976622 232211 0 0011 14566778888
Q ss_pred cccCcEEEE
Q 003302 149 LAPKGTFVT 157 (832)
Q Consensus 149 LkpGG~fV~ 157 (832)
|+|||+..+
T Consensus 316 l~~~g~aai 324 (489)
T COG0286 316 LKPGGRAAI 324 (489)
T ss_pred cCCCceEEE
Confidence 999886554
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.12 Score=53.66 Aligned_cols=94 Identities=22% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--C------CC--CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--P------IR--GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--~------i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.+|||+|+|+|--+.+++... ...|++.|+.|.. . .. ++.+...|+... ...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~--------------~~~ 142 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS--------------PPA 142 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC--------------Ccc
Confidence 58999999999999888777652 4578888888731 1 11 244555665541 266
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
||+|+..-- .+++. . ....+. ....|+..|.-|+ ||.+.+
T Consensus 143 ~Dl~LagDl-----fy~~~--~----a~~l~~-~~~~l~~~g~~vl-vgdp~R 182 (218)
T COG3897 143 FDLLLAGDL-----FYNHT--E----ADRLIP-WKDRLAEAGAAVL-VGDPGR 182 (218)
T ss_pred eeEEEeece-----ecCch--H----HHHHHH-HHHHHHhCCCEEE-EeCCCC
Confidence 799997421 11111 1 112233 5566667777776 776654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.29 Score=54.80 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=64.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----API-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
|..-...+|+|+|.|..+-.+....| ....+=+|+..+ ..+ |+|.++-+|.... + ..-|+
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~-------------P~~da 239 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T-------------PKGDA 239 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhcCCcceeccccccc-C-------------CCcCe
Confidence 33457899999999999977777766 333333344332 134 8888888887652 1 12277
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+.- .+-++|.-+. |...|+.|...|.|||.++++-
T Consensus 240 I~mk---WiLhdwtDed------cvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 240 IWMK---WILHDWTDED------CVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred EEEE---eecccCChHH------HHHHHHHHHHhCCCCCEEEEEe
Confidence 7753 2334454333 5688999999999999999853
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.14 Score=55.14 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++..|||+|+|+|.||..|+... ..|++|++++. ...+++.++.+|+........+ ...
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~--------~~~ 97 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL--------KNQ 97 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC--------SSS
T ss_pred CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh--------cCC
Confidence 378999999999999999999985 59999999972 1246899999999886533211 123
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
..+|+++.+
T Consensus 98 ~~~vv~NlP 106 (262)
T PF00398_consen 98 PLLVVGNLP 106 (262)
T ss_dssp EEEEEEEET
T ss_pred ceEEEEEec
Confidence 467887754
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.14 Score=50.02 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVPI 78 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp~ 78 (832)
.+...|+|+|||-|.++++|+.++ ..+..|+|||.++-
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 567899999999999999999832 24679999999873
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.86 Score=48.07 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=74.9
Q ss_pred cCchhHHHHHHHhhhhhcCCCC-C-CCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCC-----------C------
Q 003302 20 HGYRSRASWKLVQLDSKFSFLR-S-SHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPI-----------A------ 79 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~-~-g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~-----------~------ 79 (832)
.+|--|-|-.|.| +-|.++. . .-.+-|-|||.|+...++.-..+. -..|+|-|+++- .
T Consensus 29 p~FPVRLAsEi~q--R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~ 106 (246)
T PF11599_consen 29 PAFPVRLASEIFQ--RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLE 106 (246)
T ss_dssp ----HHHHHHHHH--HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHH
T ss_pred CCccHHHHHHHHH--HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHH
Confidence 3456677777776 3466663 2 346999999999998888765432 235999999831 0
Q ss_pred ------------------------------------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCC
Q 003302 80 ------------------------------------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNV 123 (832)
Q Consensus 80 ------------------------------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv 123 (832)
+..-....+.|++++.....+. .. ...|+|+.|.+..-
T Consensus 107 ~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~---~~~diViTDlPYG~ 180 (246)
T PF11599_consen 107 ARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AG---FTPDIVITDLPYGE 180 (246)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT------SEEEEE--CCC
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cC---CCCCEEEecCCCcc
Confidence 0112557889999976543221 11 23499999986444
Q ss_pred CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEec
Q 003302 124 GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 124 ~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~K 183 (832)
...|.-+ .+..=+...|.....+| |++.+|+-+-++.-.. ...|..++.+|
T Consensus 181 ~t~W~g~--~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~~Ki~------~~~~r~~~rlK 231 (246)
T PF11599_consen 181 MTSWQGE--GSGGPVAQMLNSLAPVL-PERSVVAVSDKGRKIP------HDRFRRLERLK 231 (246)
T ss_dssp SSSTTS-----HHHHHHHHHHHHCCS--TT-EEEEEESSSS---------TTS--SEEEE
T ss_pred cccccCC--CCCCcHHHHHHHHHhhC-CCCcEEEEecCCcccc------cchhHHHHHHh
Confidence 4457553 11122356677788899 6666666454554321 24455555543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.11 Score=49.87 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITK 93 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~ 93 (832)
+|||+|||.|.++..++...+ .++|++||.+|-. .++++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999988765 5699999999721 23456666666654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.63 Score=52.94 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC-------------------------------CC-------EEEEEeCCC-CC--
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV-------------------------------GS-------LVLGLDLVP-IA-- 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~-------------------------------~~-------~ViGVDLsp-~~-- 79 (832)
.++..++|-=||+|.++.-+|...+. .+ .++|+|+++ +.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35578999999999999887765421 01 477999997 21
Q ss_pred --------CCCC-ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc
Q 003302 80 --------PIRG-AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA 150 (832)
Q Consensus 80 --------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk 150 (832)
.+.+ |+|.++|++++... ...+|+|+||++. |....+......|.......+.+.+.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~-----------~~~~gvvI~NPPY---GeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEP-----------LEEYGVVISNPPY---GERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCC-----------CCcCCEEEeCCCc---chhcCChhhHHHHHHHHHHHHHHHhc
Confidence 2333 78899999875321 1567999999852 33333332222244444455557777
Q ss_pred cCcEEEEE
Q 003302 151 PKGTFVTK 158 (832)
Q Consensus 151 pGG~fV~K 158 (832)
-.+.+|+.
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 77777663
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.1 Score=45.27 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=70.0
Q ss_pred EcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----C------------CCCceEE-EccCCChhHHHHHHHHHhhccCCc
Q 003302 49 LCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----P------------IRGAVSL-EQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 49 LGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~------------i~~V~~i-~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+|-|--+|+..|+...+.+..|+|.-+.... . .++|.++ ..|+|.+... + ......
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~------~-~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKH------F-RLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccc------c-cccCCc
Confidence 5666666778888887656678887665421 1 2345444 4488875422 1 011277
Q ss_pred ccEEEeCCCCCCCCC--c-hhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 112 FDLVLHDGSPNVGGA--W-AQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 112 FDlVlsDgapnv~g~--w-~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
||.|+-|- |.+|+. . .........|+...+..|..+|+++|.+.+.+..++.|
T Consensus 76 FDrIiFNF-PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 76 FDRIIFNF-PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CCEEEEeC-CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 89999996 444411 1 11111334778899999999999999999988877654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.63 Score=49.41 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=45.2
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC------chhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA------WAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~------w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.++++|..+ +...|++ +++|+|+.||+.+.+.. +..+ ........++..+.++|+|||.|++
T Consensus 3 ~l~~gD~le------~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~--~~~ew~~~~l~E~~RVLKpgg~l~i- 70 (227)
T PRK13699 3 RFILGNCID------VMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGD--KTDEWLQPACNEMYRVLKKDALMVS- 70 (227)
T ss_pred eEEechHHH------HHHhCCc---cccceEEeCCCcccccccCCCcccccc--cHHHHHHHHHHHHHHHcCCCCEEEE-
Confidence 455666543 2223444 66799999997664211 1111 1224456788999999999999986
Q ss_pred EcCCCC-HHHHHHHHHH
Q 003302 159 VFRSQD-YSSVLYCLKQ 174 (832)
Q Consensus 159 VFrs~d-~~~ll~~L~~ 174 (832)
|.+.. ...+...+..
T Consensus 71 -f~~~~~~~~~~~al~~ 86 (227)
T PRK13699 71 -FYGWNRVDRFMAAWKN 86 (227)
T ss_pred -EeccccHHHHHHHHHH
Confidence 33322 3344444443
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.9 Score=44.85 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCC--CC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVP--IA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp--~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
...|++.|...||-+...|..| +....|+|||++- .. ..|+|.|++++-+++.....++..-..-+ -=
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~---kI 146 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYP---KI 146 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCC---cE
Confidence 4689999999999766655543 3335899998873 32 36899999999999876665554322211 12
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.|. .+..+ .+++.|++...+|..|-++|+
T Consensus 147 fvilDs------dHs~~------hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 147 FVILDS------DHSME------HVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred EEEecC------CchHH------HHHHHHHHhhhHhhcCceEEE
Confidence 344442 22232 356778888889999999986
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.3 Score=47.62 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
|.+|| |.|-+-.+..++........|+-+|+.. +. .++ +.+++.|+..+ |+..-.+.
T Consensus 45 gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~---------LP~~~~~~ 112 (243)
T PF01861_consen 45 GKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP---------LPEELRGK 112 (243)
T ss_dssp T-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS------------TTTSS-
T ss_pred CCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc---------CCHHHhcC
Confidence 56776 4456666555554444456899999986 21 244 88899999885 22223388
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
||++++||+ |-.+.+ . -.+..+...|+.-|..++-.|...
T Consensus 113 fD~f~TDPP------yT~~G~---~---LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 113 FDVFFTDPP------YTPEGL---K---LFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp BSEEEE---------SSHHHH---H---HHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CCEEEeCCC------CCHHHH---H---HHHHHHHHHhCCCCceEEEEEecC
Confidence 999999985 222222 1 234567788887664443344433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.74 Score=58.73 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=54.6
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE-cCCCCHHHHHHHHHHc---ccceEEecCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV-FRSQDYSSVLYCLKQL---FEKVEVDKPA 185 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV-Frs~d~~~ll~~L~~~---F~~V~~~KP~ 185 (832)
|.|.+|.||.--...|.-...+. ..+....+..|+.+..+||.+|+|+ |.... -+-|+++++ |..+.++||.
T Consensus 568 Gtf~fVYSDVDQV~dg~~dl~As--~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~--vW~~if~~~s~~~~~~~ivKPl 643 (1289)
T PF06016_consen 568 GTFTFVYSDVDQVQDGGDDLVAS--NRAAISQLDVALQMTTAGGSTVVKINFPTRA--VWTQIFRQYSPRFTSYHIVKPL 643 (1289)
T ss_dssp --EEEEEEE-----SSTTTHHHH--HHHHHHHHHHHHHHEEEEEEEEEEESS--CC--HHHHHHHHCCCCECEEEEEEEE
T ss_pred CceEEEEecchhhccCCcchhhh--hHHHHHHHHHHHHhhcCCceEEEEEcCCChH--HHHHHHHHhccccceeeEecce
Confidence 88999999974333333334333 3455677889999999999999998 55544 234556655 8889999998
Q ss_pred CCCCCCcceeEEEeecc
Q 003302 186 ASRSASAEIYLLGIKYK 202 (832)
Q Consensus 186 sSR~~SaEiyvVc~gfk 202 (832)
-.. |.|+|+| .+.+
T Consensus 644 I~N--NvEvflv-~~~~ 657 (1289)
T PF06016_consen 644 IVN--NVEVFLV-FGGR 657 (1289)
T ss_dssp SSS--S--EEEE-ECEC
T ss_pred eec--ceEEEEE-EEee
Confidence 754 5799999 4444
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.76 Score=51.09 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhc-c
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEH-G 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~-~ 108 (832)
..++..+||.-.|.||.+..++..+|. +.|+|+|..|.. + -.++.++++++.+... .+... .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~------~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE------YLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH------HHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH------HHHHccC
Confidence 467889999999999999999999886 899999999731 2 2468999999887542 23333 3
Q ss_pred CCcccEEEeCC
Q 003302 109 VRAFDLVLHDG 119 (832)
Q Consensus 109 ~~~FDlVlsDg 119 (832)
...||-|+.|-
T Consensus 91 ~~~~dgiL~DL 101 (310)
T PF01795_consen 91 INKVDGILFDL 101 (310)
T ss_dssp TS-EEEEEEE-
T ss_pred CCccCEEEEcc
Confidence 36789999985
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.59 Score=50.93 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=58.5
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||||+||.||++.-+... + -..|+++|+++.. ..++. ++++||++..... + ...||+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~-----~----~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKD-----F----IPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhh-----c----CCCCCEEEeC
Confidence 6999999999998877654 2 3468899999732 23443 5778988754321 1 1457999998
Q ss_pred CCCCCCC-Cc----hhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 119 GSPNVGG-AW----AQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 119 gapnv~g-~w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+++...+ .. ..+. ...|....++.+ ..++|- +|++
T Consensus 70 pPCq~fS~ag~~~~~~d~--r~~L~~~~~~~i-~~~~P~-~~v~ 109 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDT--RGTLFFEIIRIL-KEKKPK-YFLL 109 (275)
T ss_pred CCChhhhHHhhcCCCCCc--hHHHHHHHHHHH-HhcCCC-EEEE
Confidence 7644211 11 1111 224555555544 455776 4444
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.18 Score=57.26 Aligned_cols=95 Identities=22% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++..++|+|||-|+.+.+++..- .+.++|++.++.. .+.+ +.++.+|+-..+ +.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--------fed-- 176 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--------FED-- 176 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--------CCc--
Confidence 567789999999999999998874 4689999998632 1111 223334443321 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||.|-+.-+ +.+.++ ...++..+.++|+|||.++++.
T Consensus 177 -n~fd~v~~ld~----~~~~~~-------~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 177 -NTFDGVRFLEV----VCHAPD-------LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred -cccCcEEEEee----cccCCc-------HHHHHHHHhcccCCCceEEeHH
Confidence 45677665421 111122 2456778999999999999854
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.57 E-value=8.8 Score=40.65 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.+... ...+.++++|+++......+...+.. ..+.+|+|+++...
T Consensus 6 gk~vlItGas-~gIG~~ia~~l~~~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~-~~~~id~li~~Ag~ 82 (258)
T PRK06398 6 DKVAIVTGGS-QGIGKAVVNRLKEEGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVIS-KYGRIDILVNNAGI 82 (258)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEEECCCC
Confidence 5788888865 55555555444 245689988876532 23578899999997655444443322 12567999998753
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=6.1 Score=41.91 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhCC-CCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRVP-VGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~p-~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| |++..++..+- .+..|+.++.+.-. .+..+.++++|+++......+...+... ++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE-WG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH-cC
Confidence 4678999999984 77776665542 35677777766311 1234567899999987665555444322 26
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 88 ~ld~lv~nAg~ 98 (258)
T PRK07533 88 RLDFLLHSIAF 98 (258)
T ss_pred CCCEEEEcCcc
Confidence 78999999753
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=9.3 Score=40.42 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC--CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP--IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp--~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+..||=.|| +|+++..++..+ ..+..|++++.++ .....++.++++|+++......+...+.. ..+.+|+|+++.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~~g~~d~li~~a 81 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIA-RAGRIDVLVNNA 81 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHH-hCCCCCEEEECC
Confidence 456777775 577777766544 2356898888765 23455788999999997655444433322 236679999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
.+.
T Consensus 82 g~~ 84 (270)
T PRK06179 82 GVG 84 (270)
T ss_pred CCC
Confidence 653
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=9.6 Score=40.84 Aligned_cols=79 Identities=14% Similarity=-0.009 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCCC--------C-CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVPI--------A-PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp~--------~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++. +|++..++..+. .+..|+.++.+.- . ..+.+.++++|+++......+...+.. .++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~g 83 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK-VWP 83 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh-hcC
Confidence 367888899987 377665555442 3567777765421 0 124466789999998766555544432 236
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 84 ~iD~linnAg~ 94 (262)
T PRK07984 84 KFDGFVHSIGF 94 (262)
T ss_pred CCCEEEECCcc
Confidence 78999999853
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=86.63 E-value=3.7 Score=44.92 Aligned_cols=45 Identities=27% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHhhhhhcCC---CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 30 LVQLDSKFSF---LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 30 Liqi~~kf~f---l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+-+|...|.- -....+||=-|||-|.++--+|.+ +-.+.|++.|.
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~ 88 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSY 88 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchH
Confidence 3345554431 123578999999999999888876 56899999984
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.3 Score=46.26 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCC----CCCEEEEEeCCCCC--------CC---CCceEEEccCCC
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP----VGSLVLGLDLVPIA--------PI---RGAVSLEQDITK 93 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p----~~~~ViGVDLsp~~--------~i---~~V~~i~gDIt~ 93 (832)
.|++.....++|.+...+|++|||.|.++.+++..++ ....++.||..... .. +.+.-+..||.+
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeec
Confidence 4788888899999999999999999999999999884 34688999997532 11 246667889998
Q ss_pred hhH
Q 003302 94 PEC 96 (832)
Q Consensus 94 ~~~ 96 (832)
+..
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 753
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=14 Score=38.91 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++..+-. ...++.++++|+++......+...+.. ..+++|+|+++..
T Consensus 9 ~k~vlItG~s-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id~li~~Ag 86 (266)
T PRK06171 9 GKIIIVTGGS-SGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIE-KFGRIDGLVNNAG 86 (266)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEEECCc
Confidence 5678867755 45555554443 346789999887643 223578899999998765554444332 1257799999875
Q ss_pred C
Q 003302 121 P 121 (832)
Q Consensus 121 p 121 (832)
.
T Consensus 87 ~ 87 (266)
T PRK06171 87 I 87 (266)
T ss_pred c
Confidence 3
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.14 E-value=4 Score=45.63 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCCCCEEEEEcCCcCHH-HHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCC--Chh-HHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGW-MQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDIT--KPE-CRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~-sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt--~~~-~~~~l~~~L~~~~~~~ 111 (832)
+++|.+||=|||||=|. +..+++.++ .+.|+.+|+++.. ..-+++.+.-+-. ++. ....+...+.. ..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~---~~ 242 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGK---KQ 242 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccc---cC
Confidence 46789999999999665 556677776 5799999999742 1123333322111 122 22223333322 23
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+++. ++|. ...+..|...|++||++++-.+-
T Consensus 243 ~d~~~d-----CsG~------------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 243 PDVTFD-----CSGA------------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred CCeEEE-----ccCc------------hHHHHHHHHHhccCCEEEEeccC
Confidence 688774 3332 22345678899999997774443
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=12 Score=39.75 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCEEEEEcCC-cCHHHHHHHHhCC-CCCEEEEEeCCCC----C----CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAA-PGGWMQVAVQRVP-VGSLVLGLDLVPI----A----PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcG-PGg~sq~La~~~p-~~~~ViGVDLsp~----~----~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.|+| .+|++..++..+. .+..|+.++.+.. . .+ ..+.++++|+++......+...+... .+.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~-~g~ 85 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREH-VDG 85 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHH-cCC
Confidence 5789999996 5788777766543 3567888775531 1 12 24678899999987655554444322 267
Q ss_pred ccEEEeCCCCCCC-----CCc--hhHHhH---HhHH--HHHHHHHHHhhcccCcEEEE
Q 003302 112 FDLVLHDGSPNVG-----GAW--AQEAMS---QNAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 FDlVlsDgapnv~-----g~w--~~D~~~---q~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+++++...... ... ..+.+. ...+ ....++.+...|+++|.+|.
T Consensus 86 iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~ 143 (256)
T PRK07889 86 LDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVG 143 (256)
T ss_pred CcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEE
Confidence 8999998753311 011 112211 1111 12344556677788898775
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=9.2 Score=41.06 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=49.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++|=-|+ |+++..++..+..+..|+.++.++-. .. ..+.++++|+++......+...+.. .+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~--~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQT--LGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHh--cCCCCE
Confidence 4554554 68888888877667789999876411 11 2477889999998765555544432 367899
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9999753
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=6.4 Score=40.94 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|+ +|+++..++..+- .+..|+++..+... . -.++.++++|++++.....+...+.. ..+
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 83 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE-EFG 83 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-hCC
Confidence 567887775 4567766665442 35578887664321 0 12467889999997655444433322 124
Q ss_pred cccEEEeCCCCCCCCCchhHH-hH-HhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEA-MS-QNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~-~~-q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++.+........... +. ...-...+++.+...+..+|.||+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 679999887432111101110 00 001122344555666666787775
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.9 Score=52.67 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCCchHHHHHHhcCchhHHHHHHHh---hhhhcCCC-CCCCEEEEEcCCcCHHHHHHHHhC-------CC----CCEEEE
Q 003302 8 HRLDKYYRLAKEHGYRSRASWKLVQ---LDSKFSFL-RSSHAVLDLCAAPGGWMQVAVQRV-------PV----GSLVLG 72 (832)
Q Consensus 8 ~~~D~yy~~Ake~gyrsRaafKLiq---i~~kf~fl-~~g~~VLDLGcGPGg~sq~La~~~-------p~----~~~ViG 72 (832)
...|.||.. .|-..-+.++.++ |..+|... .+.-+|+|+|-|+|.-..++.+.+ +. .-++++
T Consensus 22 ~f~d~y~s~---~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s 98 (662)
T PRK01747 22 QFDDVYFSN---DNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFIS 98 (662)
T ss_pred cCCCcccCC---CCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEE
Confidence 455666652 3334444444433 33444322 233689999999999655554333 21 247999
Q ss_pred EeCCCCC---------------------------CCCCc------------eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 73 LDLVPIA---------------------------PIRGA------------VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 73 VDLsp~~---------------------------~i~~V------------~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
++..|+. .++++ +.+.+|+.+ .+.... ..||
T Consensus 99 ~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~---------~~~~~~-~~~d 168 (662)
T PRK01747 99 FEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANE---------LLPQLD-ARAD 168 (662)
T ss_pred EECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHH---------HHHhcc-cccc
Confidence 9986642 01232 123345432 122111 4579
Q ss_pred EEEeCC-CCCC-CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDG-SPNV-GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDg-apnv-~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.|| +|.. ...|..+ .+....++++|||+|++
T Consensus 169 ~~~lD~FsP~~np~~W~~~----------~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 169 AWFLDGFAPAKNPDMWSPN----------LFNALARLARPGATLAT 204 (662)
T ss_pred EEEeCCCCCccChhhccHH----------HHHHHHHHhCCCCEEEE
Confidence 999998 4432 2346654 34567789999999996
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=11 Score=39.72 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCCC-----CCC--CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVPI-----API--RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp~-----~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.++|=.|++. +|++..++..+- .+..|+.++.+.- ..+ ..+.++++|++++.....+...+.. .++++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKE-RVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH-HhCCC
Confidence 367899899885 677766666552 4668887765421 111 2477899999998765555444432 13678
Q ss_pred cEEEeCCC
Q 003302 113 DLVLHDGS 120 (832)
Q Consensus 113 DlVlsDga 120 (832)
|+++++..
T Consensus 85 D~lv~nAg 92 (252)
T PRK06079 85 DGIVHAIA 92 (252)
T ss_pred CEEEEccc
Confidence 99999874
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.31 E-value=17 Score=37.77 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.++|=.|++ |+++..++..+ ..+..|++++..+.... .++.++.+|+++......+...+.. ..+.+|+|+++..
T Consensus 8 ~k~vlItGas-~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~vi~~ag 85 (252)
T PRK08220 8 GKTVWVTGAA-QGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLA-ETGPLDVLVNAAG 85 (252)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHH-HcCCCCEEEECCC
Confidence 4667766665 45555555433 34678999988763222 2477889999998765554443322 1256799999875
Q ss_pred C
Q 003302 121 P 121 (832)
Q Consensus 121 p 121 (832)
.
T Consensus 86 ~ 86 (252)
T PRK08220 86 I 86 (252)
T ss_pred c
Confidence 3
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.24 E-value=4.7 Score=45.62 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+||.+|||+ |.++..+++.++. ..|++++.++-. ...++.++...-.+ .....+.....+ ..+|
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~l~~~~~~---~~~D 256 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGAETINFEEVD-DVVEALRELTGG---RGPD 256 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCcEEEcCCcch-HHHHHHHHHcCC---CCCC
Confidence 46788999999887 7777778888753 369999887621 12133333221111 122333333222 3579
Q ss_pred EEEeCCCCCC-CCCchhH--Hh-HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNV-GGAWAQE--AM-SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv-~g~w~~D--~~-~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+....... ...|..- +. ....-...++..+.++|++||+|++-
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 9987421110 0001000 00 00000123556778899999999873
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=13 Score=38.20 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||=.|| +|+++..++..+. .+..|++++.++.. .+.++.++.+|+++......+...+.. +.+|+|+++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---~~id~vi~~ 78 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQG---QRFDLLFVN 78 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhc---CCCCEEEEc
Confidence 4665665 4666665554442 35689999987632 234678889999997665555555543 457999998
Q ss_pred CC
Q 003302 119 GS 120 (832)
Q Consensus 119 ga 120 (832)
..
T Consensus 79 ag 80 (225)
T PRK08177 79 AG 80 (225)
T ss_pred Cc
Confidence 64
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=14 Score=40.06 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=61.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC-----------CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP-----------IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~-----------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++...... -.++.++.+|+++......+...+... .+
T Consensus 46 ~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~-~~ 123 (290)
T PRK06701 46 GKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE-LG 123 (290)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence 5678888864 45555554443 2356788887664210 124678899999977655444333221 25
Q ss_pred cccEEEeCCCCCC--CCCc--hhHHhH---Hh--HHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNV--GGAW--AQEAMS---QN--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv--~g~w--~~D~~~---q~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|++++.... .... ..+.+. +. .-...++..+...++++|.||+
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~ 179 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIIN 179 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEE
Confidence 6799999864211 1111 111111 01 1123344455566677888876
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=16 Score=38.40 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.+.+||-.||+ |+++..++..+ ..+..|++++.++-... .++.++++|+++......+...+... .+.+|+|+++.
T Consensus 8 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~vi~~a 85 (260)
T PRK06523 8 AGKRALVTGGT-KGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLER-LGGVDILVHVL 85 (260)
T ss_pred CCCEEEEECCC-CchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHH-cCCCCEEEECC
Confidence 46789988865 44555554433 23568999987653333 24778999999987655444433221 25679999987
Q ss_pred C
Q 003302 120 S 120 (832)
Q Consensus 120 a 120 (832)
.
T Consensus 86 g 86 (260)
T PRK06523 86 G 86 (260)
T ss_pred c
Confidence 5
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=83.34 E-value=8.6 Score=42.51 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+++||=.|+ +|+++.+++..+-. ...|++++..+.. ..+++.++.+|+++.... ...+ ..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l---~~~~-----~~ 74 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERL---TRAL-----RG 74 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHH---HHHH-----hc
Confidence 677887776 57888777765422 2478888765421 113588899999997543 2333 23
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|.++.
T Consensus 75 iD~Vih~Ag~ 84 (324)
T TIGR03589 75 VDYVVHAAAL 84 (324)
T ss_pred CCEEEECccc
Confidence 5999998764
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=18 Score=38.47 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCC-----CC----CC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVP-----IA----PI--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp-----~~----~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.++|=.|+++ +|++..++..+- .+..|+.++.+. +. .+ .++.++++|+++......+...+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~- 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE- 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh-
Confidence 467899999984 777777666543 456787775432 10 11 24778899999987666555554432
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
++.+|+++++..
T Consensus 85 ~g~ld~lv~nag 96 (257)
T PRK08594 85 VGVIHGVAHCIA 96 (257)
T ss_pred CCCccEEEECcc
Confidence 367899999864
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.36 E-value=23 Score=38.51 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=61.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|+ +|+++..++..+ ..+..|+.+.+.... . -..+.++.+|+++......+...+.. ..
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~ 132 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK-EL 132 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH-Hh
Confidence 567887885 555666555544 235567766554210 0 12467889999997654444333222 12
Q ss_pred CcccEEEeCCCCCCC-C-Cc--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVG-G-AW--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~-g-~w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++...... . .+ ..+.+.. . .-....++.+...|++||.||+
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 567999999864321 1 11 1111111 1 1112345556667788888876
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.25 E-value=0.61 Score=46.81 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.++|+|++. +..+|+.-.+. ..++++++++|+|||++-|.|...
T Consensus 46 ns~d~iyae--------HvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 46 NSVDAIYAE--------HVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchHHHHHH--------HHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcCCc
Confidence 455887763 45666654333 578999999999999999977444
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=81.96 E-value=1.2 Score=48.27 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=55.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||||+||-||++.-+.... --.|.++|+++.. ..+ ....+||+..... .++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~~----~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLPK----DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHHH----T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccc-----cccc----cceEEEec
Confidence 69999999999998877652 2378999999742 234 7789999987543 2332 24999887
Q ss_pred CCCCCCC-Cc----hhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 119 GSPNVGG-AW----AQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 119 gapnv~g-~w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
+++...+ .. ..|. ...|....++. ...++|--.|+
T Consensus 69 pPCQ~fS~ag~~~~~~d~--r~~L~~~~~~~-v~~~~Pk~~~~ 108 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDP--RNSLFFEFLRI-VKELKPKYFLL 108 (335)
T ss_dssp ---TTTSTTSTHHCCCCH--TTSHHHHHHHH-HHHHS-SEEEE
T ss_pred cCCceEeccccccccccc--cchhhHHHHHH-HhhccceEEEe
Confidence 6543211 11 1121 12455555554 45678855443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=19 Score=38.03 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++|=.|++ |+++..++..+ ..+..|+.++.++-. .+ ..+.++++|+++......+...+... .+.+|+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR-FGRVDI 83 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH-hCCCCE
Confidence 5678877754 55665555443 235688888877521 11 24788999999976554444333221 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|++++..
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9998753
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=19 Score=38.76 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=66.0
Q ss_pred CCCEEEEEcCC-cCHHHHHHHHhC-CCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAA-PGGWMQVAVQRV-PVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcG-PGg~sq~La~~~-p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++ .+|++..++..+ ..++.|+.+..+.. ..+..+.++++|++++.....+...+... ++
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g 87 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK-WG 87 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh-cC
Confidence 35688888987 477887776655 24567776643310 11233567899999987666665554332 36
Q ss_pred cccEEEeCCCCCC-----CCCc--hhHHhHH---hHH--HHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNV-----GGAW--AQEAMSQ---NAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv-----~g~w--~~D~~~q---~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+++++..... +..+ ..+.+.. ..+ ....++.+...|+.+|.+|+
T Consensus 88 ~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~ 146 (272)
T PRK08159 88 KLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILT 146 (272)
T ss_pred CCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7899999975321 1111 1112211 111 12334455667777888775
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.42 E-value=2.8 Score=47.21 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+++||+|+|||.-..++...+|.--.++-++.+|
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp 148 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP 148 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH
Confidence 5699999999987666666666433455555655
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=13 Score=39.87 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=49.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|| +|+++..++..+ ..+..|++++.++-. . ..++.++.+|+++......+...+.....+.+|+|++
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 457887776 577777766554 345689998876521 1 1357889999999765544443332211246799999
Q ss_pred CCCC
Q 003302 118 DGSP 121 (832)
Q Consensus 118 Dgap 121 (832)
++..
T Consensus 83 ~Ag~ 86 (277)
T PRK05993 83 NGAY 86 (277)
T ss_pred CCCc
Confidence 8753
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=81.02 E-value=22 Score=37.26 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.|.+||=.|++ |+++..++..+ ..+..|+.++.++-. .+ ..+.++.+|+++......+...+.. ..+.+|
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG-QFGRLD 86 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH-HhCCCC
Confidence 46788877775 56666555554 345689998876421 12 2477899999997644333222221 125679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99999753
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.90 E-value=17 Score=38.65 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC--CC--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI--AP--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~--~~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|| +|+++..++..+ ..+..|++++.++- .. -.++.++.+|+++......+...+... .+.+|+|++
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~~~id~li~ 80 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAE-EGRIDVLVN 80 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHh-cCCCCEEEE
Confidence 457776674 566777776654 34568998877642 11 135888999999987655444433221 256799999
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
+..+.
T Consensus 81 ~ag~~ 85 (273)
T PRK06182 81 NAGYG 85 (273)
T ss_pred CCCcC
Confidence 97543
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=80.71 E-value=2.2 Score=43.54 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccEEEeCCCCCCCCC------c--hhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 112 FDLVLHDGSPNVGGA------W--AQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 112 FDlVlsDgapnv~g~------w--~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+|+|+.|++.+++.. + ......-...+...+..+.++|+|||.+++-+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 499999998765543 0 01111123446778899999999999998754
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.29 E-value=0.94 Score=47.40 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=28.4
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV 76 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs 76 (832)
--+.|+|||-||++..|+...| ...|+|++|.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR 93 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIR 93 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhh
Confidence 4599999999999999999988 5699999886
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=19 Score=38.27 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhCC-CCCEEEEEeCCCC-----C----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRVP-VGSLVLGLDLVPI-----A----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~p-~~~~ViGVDLsp~-----~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| |++..++..+. .++.|+.++.+.. . .+....++++|++++.....+...+.. .++
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~-~~g 85 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE-KWG 85 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 3567888888774 55555544332 3567877765421 0 112234568999998766555554433 236
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+++++..
T Consensus 86 ~iDilVnnag 95 (260)
T PRK06603 86 SFDFLLHGMA 95 (260)
T ss_pred CccEEEEccc
Confidence 7899999864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.07 E-value=8.6 Score=43.44 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCcCH--HHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGG--WMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg--~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.||.+|+=.|+| |. .+.-+++.++ +.|+++|.++-. .+-.-.++.+. +......+. +.|
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~--------~~~ 230 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK--------EIA 230 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH--------hhC
Confidence 4689999999998 32 3444455553 799999999742 22122233322 322222222 226
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|+.-.. . ..+..++.+|++||++|+-
T Consensus 231 d~ii~tv~-~-----------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 231 DAIIDTVG-P-----------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred cEEEECCC-h-----------------hhHHHHHHHHhcCCEEEEE
Confidence 99997532 1 1234578999999999983
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.07 E-value=18 Score=44.58 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.+||=.|++ |+++..++..+ ..+..|++++.++-. .+ .++.++.+|+++......+...+.. ..+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~-~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL-AFGG 498 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH-HcCC
Confidence 35788877764 55555554433 235689999987521 11 2678899999997655444333221 1256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 499 iDvvI~~AG~ 508 (681)
T PRK08324 499 VDIVVSNAGI 508 (681)
T ss_pred CCEEEECCCC
Confidence 7999998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.05 E-value=14 Score=39.26 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=47.7
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+||=.|| +|+++..++..+ ..+..|++++.++-. ...++.++.+|+++......+...+.. ..+.+|+|+++.
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~id~vi~~a 80 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEA-EHGGLDVLINNA 80 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHH-hcCCCCEEEECC
Confidence 4665665 566666665544 335689998876421 113577889999997655544443322 125679999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
...
T Consensus 81 g~~ 83 (274)
T PRK05693 81 GYG 83 (274)
T ss_pred CCC
Confidence 643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 832 | ||||
| 2nyu_A | 196 | Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) | 1e-22 | ||
| 1eiz_A | 180 | Ftsj Rna Methyltransferase Complexed With S- Adenos | 4e-20 | ||
| 2plw_A | 201 | Crystal Structure Of A Ribosomal Rna Methyltransfer | 1e-15 | ||
| 3dou_A | 191 | Crystal Structure Of Methyltransferase Involved In | 2e-12 |
| >pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196 | Back alignment and structure |
|
| >pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180 | Back alignment and structure |
|
| >pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201 | Back alignment and structure |
|
| >pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell Division From Thermoplasma Volcanicum Gss1 Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 832 | |||
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 3e-81 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 2e-78 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 3e-75 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 9e-74 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 6e-40 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 3e-24 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 4e-07 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 6e-07 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 2e-04 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 3e-04 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 4e-04 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 7e-04 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 9e-04 |
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 3e-81
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 3/190 (1%)
Query: 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP 80
RSRA++KL L ++ +R AV+++ ++PGGW QV ++ +DL +
Sbjct: 4 QLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEMEE 60
Query: 81 IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVID 140
I G + DI K + + + E G+ D V+ D V G +++ +
Sbjct: 61 IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQR 120
Query: 141 SVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIK 200
+++A ++L G + K F+ + + ++ F ++ KP ASR +S+EIY++
Sbjct: 121 VMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFG 180
Query: 201 YKAPAKIDPR 210
+KA
Sbjct: 181 FKAEGHHHHH 190
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 2e-78
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP 80
G RSRA +KL ++ + V+DL AAPGGW Q V ++ ++ DL+P+ P
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP 60
Query: 81 IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVID 140
I G L+ D K ++E G +V+ D +PN+ G A + LV
Sbjct: 61 IVGVDFLQGDFRDELVM---KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVEL 117
Query: 141 SVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIK 200
++++ LAP G+FV KVF+ + + L ++ LF KV+V KP +SR+ S E+Y++
Sbjct: 118 ALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177
Query: 201 YK 202
K
Sbjct: 178 RK 179
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 3e-75
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRV--------PVGSLVLGL 73
YRSR+++KL++++ + LR VLD AAPG W QVAVQ+V VLG+
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61
Query: 74 DLVPIAPIRGAVSLEQ-DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM 132
DL+ I P+ GA L D+T P R+ +V+ R D++L D +PN G +
Sbjct: 62 DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPG---RRADVILSDMAPNATGFRDLDHD 118
Query: 133 SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASA 192
+L + + + L P GTF+ K + + L + F+ V + KP ASR S+
Sbjct: 119 RLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESS 178
Query: 193 EIYLLGIKYKAPAKIDP 209
E+Y L +Y
Sbjct: 179 EVYFLATQYHGRKGTVK 195
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 9e-74
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP 80
YRSRA++KL++LD+K+ FL+ + +LD+ PG W QV ++R + ++G+D + P
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP 61
Query: 81 IRGAVSLEQDITKPECRARV--------------KKVMEEHGVRAFDLVLHDGSPNVGGA 126
I ++ +I K K+ E + D++L D + G
Sbjct: 62 IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN 121
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
+ ++ L + Q++ GT++ K++ +++ LK +F+ V KP A
Sbjct: 122 KIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKA 181
Query: 187 SRSASAEIYLLGIKYKAPAK 206
SR+ S EIYL+ + K
Sbjct: 182 SRNESREIYLVCKNFLGRKK 201
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-40
Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 23/242 (9%)
Query: 5 KGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRV 64
+ R SR + KL + +++ V+DL GGW A +
Sbjct: 38 RDTARRHLAEGKVDTGVAVSRGTAKLRWFHERG-YVKLEGRVIDLGCGRGGWCYYAAAQK 96
Query: 65 PVGS---LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
V LG D SL +I + + + ++ D +L D
Sbjct: 97 EVSGVKGFTLGRDGHE--KPMNVQSLGWNIITFKDKTDIHRLEPV----KCDTLLCDIGE 150
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTKVFR--SQDYSSVLYCLKQLFEK 178
+ + + + + ++LA F KV D L L++ F
Sbjct: 151 SSSSSVTEG-----ERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG 205
Query: 179 VEVDKPAASRSASAEIYLLGIKYK----APAKIDPRLLDVKYLFQGSVEPRKVVDVLRGT 234
+ P SR+++ E+Y + + L+ G V V + GT
Sbjct: 206 TVIRNP-LSRNSTHEMYYVSGARSNVTFTVNQTSRLLMRRMRRPTGKVTLEADVILPIGT 264
Query: 235 KQ 236
+
Sbjct: 265 RS 266
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-24
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 21/200 (10%)
Query: 7 KHRLDKYYRLAKEHG--YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRV 64
+ +Y + + SR + K+ L + +LR + VLDL GGW A +
Sbjct: 45 RTAARRYLKEGRTDVGISVSRGAAKIRWLHERG-YLRITGRVLDLGCGRGGWSYYAAAQK 103
Query: 65 PVGS---LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
V S LG++ PI +L +I K + ++ V + E D +L D
Sbjct: 104 EVMSVKGYTLGIEG-HEKPIHM-QTLGWNIVKFKDKSNVFTMPTE----PSDTLLCDIGE 157
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTKVFR--SQDYSSVLYCLKQLFEK 178
+ + + + ++ ++ F KV D L L+ F
Sbjct: 158 SSSNPLVERDRT-----MKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGG 212
Query: 179 VEVDKPAASRSASAEIYLLG 198
V P SR+++ E+Y +
Sbjct: 213 GIVRVP-FSRNSTHEMYYIS 231
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 5e-09
Identities = 77/568 (13%), Positives = 152/568 (26%), Gaps = 158/568 (27%)
Query: 279 DPACSAIKDHE---LTTEEVKA-------------LCDDLRVLGKQDFKHLLKWRMQIKK 322
+ C ++D L+ EE+ L L ++ + ++ ++I
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 323 AFSSAEKATVPASASAPTEGENEEDADNRVLNEMEEL-KYAMDQRKKREKKLLAKKRAKD 381
F + T S T E+ +R+ N+ + KY + R + L ++A
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNV----SRLQPYLKLRQALL 145
Query: 382 KARKATGMQIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAED-------SED 434
+ R A + ID + L S GK +A V +
Sbjct: 146 ELRPAKNVLIDGV-----------LGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 435 ERPNR--DTQEHVSSDIDSD-EERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAY 491
P + + + ID + R + ++ + R ++ K +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---ELR--RLLKSKPYENCL 247
Query: 492 AQEDQLSEGDEDED------TMHTSYDS---DKDQGDLDANPLMVPLDDGIRPTQ-EEIT 541
+ + T+ D + + + P + + +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 542 NKWFSQEIF---AEAVQNGDL-----GKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAG 593
K+ E + + + D KH +K +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTII------ 359
Query: 594 PKSTHNQVSEVEG-----DFEIVPAPGADSSDDS------------SSDESEDEEVDTKA 636
+S+ N + E + P + +S+ V K
Sbjct: 360 -ESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILLSLIWFDVIKSDVMVVVNK- 410
Query: 637 EILACAKKMLRKKQREQ----ILD--------------------DAYN--RYMFDDDGLP 670
K L +KQ ++ I D YN + DD +P
Sbjct: 411 ----LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 671 D-------WFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMR 723
+ H + I E + + F +D R E K R A
Sbjct: 467 PYLDQYFYSHIG---HHLKNIEHP--ERMTLFRMVF--LDFR----FLEQKIRHDSTAWN 515
Query: 724 K-------LEKVRKKANVISDQADISDR 744
L++++ I D +R
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 58/457 (12%), Positives = 126/457 (27%), Gaps = 115/457 (25%)
Query: 389 MQIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNA-AAEDSED--ERPNRDTQEHV 445
M + + Y ++ S+ + + D + + E+ + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 446 SSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDED 505
++ + +EEVL Y+ ++ E +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYK-FLMSP-------------IKTEQRQPSMMTRM- 111
Query: 506 TMHTSYDS--DKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLG 563
Y D+ D N + + ++ + +G LG G
Sbjct: 112 -----YIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SG 162
Query: 564 SEDETQVDKQ--AEKHSIPEKAKQKMANDA----AGPKSTHNQVSEVEGDFEIVPAPGAD 617
K A + K + KM ++ V E+ P
Sbjct: 163 --------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 618 SSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQ---ILDDAYNRY---MFD------ 665
S D SS+ +AE+ +++L+ K E +L + N F+
Sbjct: 215 SRSDHSSNIKLRIH-SIQAEL----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 666 ----DDGLPDWFLEEERRHR---QAIRPVTKEEIAAMKAQFKEIDAR----------P-- 706
+ D+ H +T +E+ ++ ++ + + P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 707 ----AKKVAEAKARK---KRVAMRKLEKVRKKA---------------------NV-ISD 737
A+ + + A K V KL + + + + I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 738 Q------ADISDRSKRKQIEQLY-KSAVPKRPKKEYV 767
D+ + +L+ S V K+PK+ +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 8e-08
Identities = 66/474 (13%), Positives = 132/474 (27%), Gaps = 140/474 (29%)
Query: 11 DKYYR----LAKEHGYRSRASWK----LVQLDS-------------KFSFLRSSHAVLD- 48
D+ Y AK + R + K L++L K +++ L
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALD-VCLSY 174
Query: 49 --LCAAPGG--WMQVAVQRVPVG------SLVLGLDLVPIAPIRGAVSLEQDITKPECRA 98
C W+ + P L+ +D + + +++ I +A
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQA 232
Query: 99 RVKKVMEEHG-VRAFDLVLHDGSPNVGGAWAQEAM---------SQNALVIDSVKLATQF 148
++++++ LVL NV A A A ++ V D + AT
Sbjct: 233 ELRRLLKSKPYENCL-LVL-L---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-- 285
Query: 149 LAPKGTFVTKVFRSQDYSSVLYC--LKQLFEK-VEVDKPAASRSASA----EIYLLGIKY 201
T +S L +K L K ++ R + ++
Sbjct: 286 --------TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 202 K-APAKIDPRLLDVKY-----LFQGSVEPRKVVDVLRGTKQKRHRDGYED-----GDTTL 250
+ A D V + + S+ VL + ++ ++
Sbjct: 338 RDGLATWD-NWKHVNCDKLTTIIESSLN------VLEPAEYRKM---FDRLSVFPPSA-- 385
Query: 251 RKVSLAT-DFIWSNNPLEILGSVT------SITFGDPACSAIKDHELTTEEVKALCDDLR 303
+ IW + + V S+ P S I + E +K ++
Sbjct: 386 -HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEY 443
Query: 304 VLGKQDFKH--LLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELKY 361
L H ++ I K F ++ D + + +
Sbjct: 444 AL------HRSIVD-HYNIPKTF--------------DSDDLIPPYLDQYFYSH---IGH 479
Query: 362 AMDQRKKREKKLL------------AKKRAKDKARKATGMQIDVMQD--DYTDH 401
+ + E+ L K R A A+G ++ +Q Y +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 8e-08
Identities = 79/550 (14%), Positives = 159/550 (28%), Gaps = 141/550 (25%)
Query: 155 FVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL----------GIK---- 200
F + D V K + K E+D S+ A + L ++
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 201 ------YK------APAKIDPRLLDVKYLFQ-----GSVEPRKVVDVLRGTKQKRHRDG- 242
YK + P ++ Y+ Q + +V R + R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 243 YED--------------GDTTL-------RKVSLATDF--IW-----SNNPLEILGSVTS 274
E G T + KV DF W N+P +L +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 275 ITFG-DPACSAIKDH----ELTTEEVKALCDDLRVLGKQDFKH-LLK----WRMQIKKAF 324
+ + DP ++ DH +L ++A + R+L + +++ LL + AF
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 325 SSAEKATVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKK---RAKD 381
+ + K + T + A ++ + + + LL K R +D
Sbjct: 263 NLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQD 317
Query: 382 KARKATG---MQIDV----MQD-----DYTDHELFS-LSSIKGKKDLAAVE-------YD 421
R+ ++ + ++D D H L++I + L +E +D
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFD 376
Query: 422 D-----DDVNAAAE-------DSEDERPNRDTQE-HVSSDIDSDEERRKY---DEQLEEV 465
+ D + H S ++ + LE
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 466 LDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDT---MHTSYD-SDKDQGDLD 521
+ E + + + K + +D D H + + + +
Sbjct: 437 VKLENEYALHRS---IVDHYNIPKTFDSDD---LIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 522 ANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPE 581
MV LD ++ Q+I ++ G + + Q K + +
Sbjct: 491 TLFRMVFLDF-----------RFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDN 537
Query: 582 KAK-QKMAND 590
K +++ N
Sbjct: 538 DPKYERLVNA 547
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-07
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 18/119 (15%)
Query: 13 YYRLAKEHGYRSRASWKLVQLDSKFSF-------LRSSHAVLDLCAAPGGWMQVAVQRVP 65
RL SR++ KL + F L + +DL A PGGW V+R
Sbjct: 175 IPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-- 232
Query: 66 VGSLVLGLDLVPIAP----IRGAVSLEQDITKPECRARVKKV----MEEHGVRAFDLVL 116
V +D P+A L +D K M E + L+
Sbjct: 233 -NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMA 290
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* Length = 305 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 24/192 (12%)
Query: 15 RLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLD 74
R +H SR S KL + + V+DL GGW V V GL
Sbjct: 56 RGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLT 113
Query: 75 LVP---IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD---GSPNVGGAWA 128
PI + + ++ + + V + E D +L D SPN
Sbjct: 114 KGGPGHEEPIPMS-TYGWNLVRLQSGVDVFFIPPE----RCDTLLCDIGESSPN----PT 164
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK--QLFEKVEVDKPAA 186
EA + + L +L+ F KV + SSV+ ++ Q + +
Sbjct: 165 VEA----GRTLRVLNLVENWLSNNTQFCVKVL-NPYMSSVIEKMEALQRKHGGALVRNPL 219
Query: 187 SRSASAEIYLLG 198
SR+++ E+Y +
Sbjct: 220 SRNSTHEMYWVS 231
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDL 75
SR + KL +D + + V+DL G W A + V V L
Sbjct: 63 AVSRGTAKLAWIDERG-GVELKGTVVDLGCGRGSWSYYAASQPNVRE-VKAYTL 114
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 15 RLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLD 74
+ SR S KL ++ + +++ + V+DL GGW A V V+
Sbjct: 64 NGIQNGIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFT 121
Query: 75 L 75
L
Sbjct: 122 L 122
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDL 75
SR + KL L + F++ V+DL GGW A V V G
Sbjct: 54 PVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQE-VRGYTK 105
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Length = 321 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDL 75
SR + KL L + FL V+DL GGW + V V G
Sbjct: 75 PVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTK 126
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} PDB: 3p97_A* 2xbm_A* 3evg_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 15 RLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLD 74
R H SR S KL + + V+DL GGW V V G
Sbjct: 52 RGETTHHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYT 109
Query: 75 L 75
Sbjct: 110 K 110
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 100.0 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 99.97 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 99.97 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.97 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.97 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 99.96 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.96 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.91 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.9 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 99.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.9 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 99.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.88 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 99.86 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.83 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.56 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 99.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.51 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 99.47 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.41 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.25 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.24 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.19 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.19 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.19 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.19 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.18 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.17 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.17 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.16 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.16 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.16 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.12 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.11 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.11 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.1 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.08 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.08 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.07 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.07 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.04 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.04 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.03 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.03 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.03 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.02 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.01 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.01 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.01 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.0 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.0 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.0 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.0 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.0 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.99 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.99 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.98 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.98 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.97 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.97 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.96 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.96 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.96 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.96 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.95 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.95 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.94 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.94 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.94 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.93 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.93 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.93 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.92 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.92 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.92 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.92 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.92 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.92 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.91 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.91 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.91 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.91 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.91 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.91 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.91 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.9 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.9 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.9 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.9 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.9 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.89 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.89 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.88 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.88 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.87 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.87 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.87 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.86 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.86 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.86 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.86 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.86 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.86 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.86 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.86 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.85 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.85 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.85 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.85 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.84 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.84 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.83 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.83 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.83 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.83 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.82 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.82 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.82 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.82 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.82 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.82 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.82 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.81 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.81 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.81 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.8 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.8 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.8 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.79 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.79 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.79 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.78 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.78 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.77 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.77 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.77 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.77 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.76 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.76 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.76 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.76 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.75 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.75 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.74 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.74 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.74 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.74 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.74 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.73 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.72 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.72 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.71 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.71 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.71 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.71 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.71 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.7 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.7 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.7 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.7 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.7 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.7 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.69 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.69 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.69 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.69 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.68 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.68 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.68 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.68 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.68 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.67 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.67 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.67 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.67 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.67 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.66 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.66 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.66 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.65 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.65 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.65 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.62 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.62 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.62 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.62 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.62 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.59 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.59 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.59 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.59 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.58 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.58 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.58 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.57 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.56 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.56 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.56 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.55 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.55 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.54 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.53 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.53 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.52 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.5 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.5 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.48 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.47 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.47 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.46 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.45 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.44 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.43 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.43 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.42 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.42 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.41 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.41 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.4 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.36 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.36 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.36 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.36 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.35 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.35 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.34 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.33 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.3 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.3 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.28 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.25 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.25 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.24 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.24 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.21 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.17 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.13 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.13 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.12 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.07 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.07 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.02 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.99 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.98 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 97.95 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.95 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 97.94 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.86 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.83 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.74 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.71 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.66 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.66 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.61 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.52 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.5 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.49 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.49 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.45 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.44 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.44 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.43 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.4 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.36 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 97.33 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.32 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.3 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.26 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.21 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.2 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.12 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.1 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.08 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.08 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 97.06 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.03 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.84 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.39 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.05 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.6 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.4 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.85 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.19 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.01 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 92.67 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.35 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.77 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 91.69 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 91.6 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.45 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 90.83 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 90.64 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.6 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 90.52 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 90.45 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.21 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 90.2 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 90.15 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 90.09 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.93 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 89.93 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.89 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 89.81 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 89.7 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.43 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.41 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 89.39 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.38 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.32 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.26 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 89.11 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 88.99 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.98 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 88.87 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 88.78 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 88.48 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 88.35 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 88.15 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 88.12 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 88.02 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.02 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.86 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.8 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 87.76 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 87.69 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 87.6 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 87.47 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 87.43 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 87.33 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 87.21 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 87.16 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.16 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 87.16 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 87.13 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 87.1 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 87.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 86.84 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.78 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 86.72 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 86.72 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 86.6 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.44 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 86.23 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.2 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 86.19 | |
| 1vpt_A | 348 | VP39; RNA CAP, poly(A) polymerase, methyltransfera | 86.18 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 86.11 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 86.0 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.97 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 85.97 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.79 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 85.78 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 85.71 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 85.49 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 85.24 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 85.23 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 85.1 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 85.04 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 85.03 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 84.72 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 84.68 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 84.67 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 84.61 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 84.6 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 84.41 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 84.36 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 84.34 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 84.19 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 84.15 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 84.11 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 84.04 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 83.97 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 83.63 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 83.51 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 83.47 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 83.47 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 83.3 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.28 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 83.28 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 83.28 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 83.26 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 83.21 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 83.14 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 83.04 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 83.01 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.01 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 82.91 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 82.89 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 82.8 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 82.8 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 82.78 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 82.55 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 82.51 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 82.32 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 82.21 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 82.08 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 82.07 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 81.99 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 81.95 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 81.81 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 81.78 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 81.76 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.68 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 81.68 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 81.65 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 81.65 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 81.64 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 81.46 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 81.44 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 81.42 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 81.3 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 81.26 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 81.21 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 81.06 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 80.94 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 80.85 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 80.81 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 80.75 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 80.68 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 80.62 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 80.4 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 80.35 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.15 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 80.06 |
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=306.89 Aligned_cols=184 Identities=26% Similarity=0.437 Sum_probs=161.2
Q ss_pred hcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHH
Q 003302 19 EHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 19 e~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~ 98 (832)
++|||+|++|||++|+.+|.++.++.+|||||||||+|+++++++ .+.|+|||++++.++++|.++++|+++..+..
T Consensus 2 ~~~yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~ 78 (191)
T 3dou_A 2 SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEMEEIAGVRFIRCDIFKETIFD 78 (191)
T ss_dssp --CTTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCCCCTTCEEEECCTTSSSHHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccccCCCeEEEEccccCHHHHH
Confidence 589999999999999999999999999999999999999999987 67999999999999999999999999988777
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccc
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~ 178 (832)
.+...+.....+.||+|+||++|++.|.|..++..+..++..+|..|.++|+|||+||+++|.+..+..+++.|..+|..
T Consensus 79 ~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~ 158 (191)
T 3dou_A 79 DIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSS 158 (191)
T ss_dssp HHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEE
T ss_pred HHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCE
Confidence 66665541111368999999999999999999998889999999999999999999999999999989999999999999
Q ss_pred eEEecCCCCCCCCcceeEEEeeccCCC
Q 003302 179 VEVDKPAASRSASAEIYLLGIKYKAPA 205 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~gfk~p~ 205 (832)
|.++||.+||..|+|+|+||+||++..
T Consensus 159 v~~~kP~asR~~s~E~y~v~~~~~~~~ 185 (191)
T 3dou_A 159 YKISKPPASRGSSSEIYIMFFGFKAEG 185 (191)
T ss_dssp EEEECC------CCEEEEEEEEECCC-
T ss_pred EEEECCCCccCCCceEEEEEeeecccc
Confidence 999999999999999999999999853
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=279.58 Aligned_cols=166 Identities=23% Similarity=0.204 Sum_probs=140.5
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC---CCCCC------CceEEEcc
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP---IAPIR------GAVSLEQD 90 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp---~~~i~------~V~~i~gD 90 (832)
..|||||+|||+||+++| +|.++.+|||||||||+|+|+++..++. ..|+|+|+.. +.+++ ++.++..+
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv-~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~ 146 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNV-KKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDK 146 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTSCCCCCCCBTTGGGEEEECS
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCC-CeeeeEEeccCccccccccccCCCceEEeeCC
Confidence 469999999999999999 8899999999999999999999987763 4788999973 44444 34555544
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC--cEEEEEEcC--CCCHH
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK--GTFVTKVFR--SQDYS 166 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG--G~fV~KVFr--s~d~~ 166 (832)
+... .+.. ..||+|+||++|| +|.+..|++.++.| |..|..+|+|| |+||+|||+ +.++.
T Consensus 147 ~dv~--------~l~~---~~~DvVLSDmApn-sG~~~~D~~rs~~L----L~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~ 210 (282)
T 3gcz_A 147 TDVF--------NMEV---IPGDTLLCDIGES-SPSIAVEEQRTLRV----LNCAKQWLQEGNYTEFCIKVLCPYTPLIM 210 (282)
T ss_dssp CCGG--------GSCC---CCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHHHHCCCEEEEEESCCCSHHHH
T ss_pred cchh--------hcCC---CCcCEEEecCccC-CCChHHHHHHHHHH----HHHHHHHcCCCCCCcEEEEEecCCCccHH
Confidence 3211 1222 5679999999999 88988999987665 78899999999 999999999 77889
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
.+++.|+++|..|.++|| +||+.|+|+|+||.+..++
T Consensus 211 ~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~ 247 (282)
T 3gcz_A 211 EELSRLQLKHGGGLVRVP-LSRNSTHEMYWVSGTRTDV 247 (282)
T ss_dssp HHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCCS
T ss_pred HHHHHHHHhcCCEEEEcC-CCcccCcceeEEEecCCCc
Confidence 999999999999999999 9999999999999987665
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=278.39 Aligned_cols=164 Identities=20% Similarity=0.173 Sum_probs=137.4
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEe--CCCCCCC-CCceE---EEc-
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLD--LVPIAPI-RGAVS---LEQ- 89 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVD--Lsp~~~i-~~V~~---i~g- 89 (832)
-+|||||+|||++|+++| ||+||++|||||||||||+|+++...+. .+.|+|+| +.||.++ +++.+ +++
T Consensus 52 g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~ 130 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGV 130 (269)
T ss_dssp SCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSC
T ss_pred CCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccC
Confidence 379999999999999998 9999999999999999999999998433 46788889 5556555 67643 447
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc-EEEEEEcCC--CCHH
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG-TFVTKVFRS--QDYS 166 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG-~fV~KVFrs--~d~~ 166 (832)
|++++. . .+||+|+||++|| +|.+..|+..++. +|..|.++|+||| .|++|||.+ ..+.
T Consensus 131 Df~~~~----------~---~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~ 192 (269)
T 2px2_A 131 DVFYKP----------S---EISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILCPYMPKVI 192 (269)
T ss_dssp CGGGSC----------C---CCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESCTTSHHHH
T ss_pred CccCCC----------C---CCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECCCCchHHH
Confidence 998732 2 4679999999999 8999999887654 8899999999999 999999996 4466
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
.++..|+++|..|.+ +|++||..|+|+|+||..--+
T Consensus 193 ~~l~~lk~~F~~vkv-k~paSR~~S~E~YlVa~~~~n 228 (269)
T 2px2_A 193 EKLESLQRRFGGGLV-RVPLSRNSNHEMYWVSGASGN 228 (269)
T ss_dssp HHHHHHHHHHCCEEE-CCTTSCTTCCCEEEETTCCSC
T ss_pred HHHHHHHHHcCCEEE-ECCCCCCCCccEEEEecccCc
Confidence 667899999999996 666999999999999876543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=273.28 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=138.7
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC---CCCCCC------CceEEEccC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV---PIAPIR------GAVSLEQDI 91 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs---p~~~i~------~V~~i~gDI 91 (832)
.|||||||||++|+++ .++.++.+|||||||||+|+|+++...+. ..|+|+|+. ++.+++ ++.++++++
T Consensus 54 ~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~-~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 54 VAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEV-SGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT 131 (277)
T ss_dssp BCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC
T ss_pred CccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCC-CcceeEEEeccCcccccccCcCCCCeEEEeccc
Confidence 4999999999999999 68899999999999999999999987653 355555555 444544 567777765
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEEEEcC--CCCHHHH
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTKVFR--SQDYSSV 168 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~KVFr--s~d~~~l 168 (832)
... .+.+ ..||+|+||++|| +|.+..|++.++.| |..|.++|+|| |+||+|||+ +.++..+
T Consensus 132 dv~--------~l~~---~~~DlVlsD~apn-sG~~~~D~~rs~~L----L~~a~~~LkpG~G~FV~KVf~pyg~~~~~l 195 (277)
T 3evf_A 132 DIH--------RLEP---VKCDTLLCDIGES-SSSSVTEGERTVRV----LDTVEKWLACGVDNFCVKVLAPYMPDVLEK 195 (277)
T ss_dssp CTT--------TSCC---CCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHTTCCSEEEEEESCTTSHHHHHH
T ss_pred eeh--------hcCC---CCccEEEecCccC-cCchHHHHHHHHHH----HHHHHHHhCCCCCeEEEEecCCCCccHHHH
Confidence 321 1222 5679999999999 88888899887665 78999999999 999999999 6788999
Q ss_pred HHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 169 LYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 169 l~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
++.|+++|..|.++|| +||+.|+|+|+||.+..++
T Consensus 196 ~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~ 230 (277)
T 3evf_A 196 LELLQRRFGGTVIRNP-LSRNSTHEMYYVSGARSNV 230 (277)
T ss_dssp HHHHHHHHCCEEECCT-TSCTTCCCEEEESSCCCCH
T ss_pred HHHHHHhcCCEEEEeC-CCCCCCCceEEEEecCCCc
Confidence 9999999999999999 9999999999999887654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=253.35 Aligned_cols=183 Identities=28% Similarity=0.539 Sum_probs=154.6
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCCCCCCceEEEccCCChh----
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIAPIRGAVSLEQDITKPE---- 95 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~~i~~V~~i~gDIt~~~---- 95 (832)
|||+|++|||+++..+|.++.++.+|||||||||+|+..++..++. .+.|+|||++++...+++.++++|+++..
T Consensus 1 ~~~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~ 80 (201)
T 2plw_A 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNI 80 (201)
T ss_dssp -CCSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhh
Confidence 7999999999999999999999999999999999999999999874 57999999999888889999999998764
Q ss_pred -------------HHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 96 -------------CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 96 -------------~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
+...+...+.. +.||+|++++++++.|.|..++.....++..++..+.++|+|||+|++.+|..
T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~---~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 81 KNINYIDNMNNNSVDYKLKEILQD---KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp -----------CHHHHHHHHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccccchhhHHHHHhhcCC---CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 22223222332 57899999999888787778887777777889999999999999999999998
Q ss_pred CCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCC
Q 003302 163 QDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAK 206 (832)
Q Consensus 163 ~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~ 206 (832)
.+...+++.+..+|..+.+++|.++|..++|.|+||.+|+++++
T Consensus 158 ~~~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~~~~~~ 201 (201)
T 2plw_A 158 SQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGRKK 201 (201)
T ss_dssp TTHHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEEECCC--
T ss_pred CCHHHHHHHHHHHHheEEEECCcccCCcCceEEEEEecCccCCC
Confidence 88888999999999999999999999999999999999998754
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-30 Score=273.34 Aligned_cols=166 Identities=23% Similarity=0.224 Sum_probs=140.0
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---CCCC------CceEEEcc
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---APIR------GAVSLEQD 90 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---~~i~------~V~~i~gD 90 (832)
.+|||||+|||+|++++ +++.++.+|||||||||||+|++++.++. ..|+|+|+... .|++ ++.++..+
T Consensus 60 g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv-~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~ 137 (300)
T 3eld_A 60 GISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEV-MSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK 137 (300)
T ss_dssp CCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTSCCCCCCCBTTGGGEEEECS
T ss_pred CCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCC-ceeeeEEeccccccccccccccCCceEEeecC
Confidence 47999999999999999 99999999999999999999999987653 47889999742 2322 33444432
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEEEEcC--CCCHHH
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTKVFR--SQDYSS 167 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~KVFr--s~d~~~ 167 (832)
+.-. .+.+ ..||+|+||++|| +|.|..|++.+..| |..|..+|+|| |+||+|||+ +.++..
T Consensus 138 ~di~--------~l~~---~~~DlVlsD~APn-sG~~~~D~~rs~~L----L~~A~~~LkpG~G~FV~KvF~~yG~~~~~ 201 (300)
T 3eld_A 138 SNVF--------TMPT---EPSDTLLCDIGES-SSNPLVERDRTMKV----LENFERWKHVNTENFCVKVLAPYHPDVIE 201 (300)
T ss_dssp CCTT--------TSCC---CCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHHHCCTTCCEEEEEESSTTSHHHHH
T ss_pred ceee--------ecCC---CCcCEEeecCcCC-CCCHHHHHHHHHHH----HHHHHHHhcCCCCcEEEEeccccCccHHH
Confidence 2110 1222 5679999999999 89999999988776 78899999999 999999999 778999
Q ss_pred HHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 168 VLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 168 ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+++.|+++|..|.++|| +||+.|+|+|+||.++.++
T Consensus 202 ll~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~ 237 (300)
T 3eld_A 202 KLERLQLRFGGGIVRVP-FSRNSTHEMYYISGARNNI 237 (300)
T ss_dssp HHHHHHHHHCCEEECCT-TSCTTCCCEEEESSCCCCH
T ss_pred HHHHHHHhCCcEEEEeC-CCCCCChHHeeeccCCCCc
Confidence 99999999999999999 9999999999999998664
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=239.27 Aligned_cols=184 Identities=35% Similarity=0.586 Sum_probs=154.7
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCC--------CEEEEEeCCCCCCCCCceEE-EccC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVG--------SLVLGLDLVPIAPIRGAVSL-EQDI 91 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~--------~~ViGVDLsp~~~i~~V~~i-~gDI 91 (832)
|||+|++|+|+++...|.++.++.+|||||||||.|+..++..++.. +.|+|||++++..++++.++ ++|+
T Consensus 1 ~~~~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~ 80 (196)
T 2nyu_A 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADV 80 (196)
T ss_dssp CCSSTHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCT
T ss_pred CchhHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccC
Confidence 79999999999999999999999999999999999999999998643 79999999998878899999 9999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHH
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYC 171 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~ 171 (832)
+.......+...+.+ ..||+|+|++++++.+.|..++.....++..++..+.++|+|||+|++.+|.......++..
T Consensus 81 ~~~~~~~~~~~~~~~---~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (196)
T 2nyu_A 81 TDPRTSQRILEVLPG---RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRR 157 (196)
T ss_dssp TSHHHHHHHHHHSGG---GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHH
T ss_pred CCHHHHHHHHHhcCC---CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHH
Confidence 987665555444443 46899999999998888888887777777889999999999999999999988888888999
Q ss_pred HHHcccceEEecCCCCCCCCcceeEEEeeccCCCCC
Q 003302 172 LKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKI 207 (832)
Q Consensus 172 L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~i 207 (832)
+..+|..+.+++|.++|..+.|.|+||.||+++..+
T Consensus 158 l~~~f~~v~~~~~~~~~~~~~e~~~v~~g~~~~~~~ 193 (196)
T 2nyu_A 158 LTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGT 193 (196)
T ss_dssp HHHHEEEEEEECCC--------EEEEEEEECCC---
T ss_pred HHHHhcceEEECCcccCccCceEEEEeeecCCcccc
Confidence 999999999999999999999999999999987653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=198.40 Aligned_cols=180 Identities=32% Similarity=0.518 Sum_probs=156.1
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHH
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARV 100 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l 100 (832)
+|++|++++|.++...|.++.++.+|||+|||+|.++..++..+++++.|+|+|++++..++++.++++|+.+......+
T Consensus 1 ~y~~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~ 80 (180)
T 1ej0_A 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhh
Confidence 69999999999999999988999999999999999999999986556799999999976778899999999987644444
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~ 180 (832)
...+.. +.||+|++++++.+.+.+..++.....+...++..+.++|+|||+|++.++.......+...+..+|..+.
T Consensus 81 ~~~~~~---~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
T 1ej0_A 81 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 157 (180)
T ss_dssp HHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE
T ss_pred hccCCC---CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhhEE
Confidence 433433 67899999998777667666666666666788999999999999999999988888888889999999999
Q ss_pred EecCCCCCCCCcceeEEEeeccC
Q 003302 181 VDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 181 ~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
+.+|.++|..+.++|+||.+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T 1ej0_A 158 VRKPDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp EECCTTSCTTCCEEEEEEEEECC
T ss_pred eecCCcccccCceEEEEEccCCC
Confidence 99999999999999999999973
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=226.86 Aligned_cols=159 Identities=21% Similarity=0.288 Sum_probs=134.9
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------CCCC------CceEE-
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------APIR------GAVSL- 87 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------~~i~------~V~~i- 87 (832)
.|++|++|||.++..+ .++.++.+|||||||||+|++++++. +.|+|||+++| .+++ +|.++
T Consensus 54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~ 128 (265)
T 2oxt_A 54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFK 128 (265)
T ss_dssp BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEE
T ss_pred CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECchhhhhhhhhhhhhhccCCCeEEEe
Confidence 5999999999999888 77889999999999999999999986 58999999997 3444 68999
Q ss_pred -EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc--EEEEEEcCCCC
Q 003302 88 -EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG--TFVTKVFRSQD 164 (832)
Q Consensus 88 -~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG--~fV~KVFrs~d 164 (832)
++|+++++ . ..||+|+||++ ++.+.|..++..+ ..+|..+.++|+||| +|++++|. ..
T Consensus 129 ~~~D~~~l~----------~---~~fD~V~sd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~fv~kv~~-~~ 189 (265)
T 2oxt_A 129 SRVDIHTLP----------V---ERTDVIMCDVG-ESSPKWSVESERT----IKILELLEKWKVKNPSADFVVKVLC-PY 189 (265)
T ss_dssp CSCCTTTSC----------C---CCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHCTTCEEEEEESC-TT
T ss_pred cccCHhHCC----------C---CCCcEEEEeCc-ccCCccchhHHHH----HHHHHHHHHHhccCCCeEEEEEeCC-CC
Confidence 99998732 1 67899999988 7777777666543 227788999999999 99999999 44
Q ss_pred HH---HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 165 YS---SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 165 ~~---~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
.. .++..+..+|..+.+++ .+||+.|+|+|+||.++..+
T Consensus 190 ~~~~~~~l~~l~~~f~~v~~~k-~~sR~~s~E~y~v~~~~~~~ 231 (265)
T 2oxt_A 190 SVEVMERLSVMQRKWGGGLVRN-PYSRNSTHEMYFTSRAGGNI 231 (265)
T ss_dssp SHHHHHHHHHHHHHHCCEEECC-TTSCTTCCCEEEESSCCSCH
T ss_pred ChhHHHHHHHHHHHcCCEEEEE-ecccCCCccEEEEecCCCCc
Confidence 45 67788889999999999 88999999999999887654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=216.18 Aligned_cols=156 Identities=22% Similarity=0.200 Sum_probs=132.6
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCC----------CCceEEEc
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPI----------RGAVSLEQ 89 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i----------~~V~~i~g 89 (832)
.+||||++|||.+|+++| +|.++++|||||||||||+|+++...++ ..|+|+|+.++... +.|+|.++
T Consensus 57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~g 134 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSG 134 (267)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCCCCCCCCTTTTSEEEECS
T ss_pred CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccCcchhhhcCcCceEEEec
Confidence 379999999999999999 7899999999999999999999988764 48999999975322 56889999
Q ss_pred -cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC--HH
Q 003302 90 -DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD--YS 166 (832)
Q Consensus 90 -DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d--~~ 166 (832)
|+.... . .+||+|+||.+| .++.+..++... +.+|.++.++|++ |.|+||||.+.. ..
T Consensus 135 vDv~~~~----------~---~~~DtllcDIge-Ss~~~~vE~~Rt----lrvLela~~wL~~-~~fc~KVl~py~p~v~ 195 (267)
T 3p8z_A 135 KDVFYLP----------P---EKCDTLLCDIGE-SSPSPTVEESRT----IRVLKMVEPWLKN-NQFCIKVLNPYMPTVI 195 (267)
T ss_dssp CCGGGCC----------C---CCCSEEEECCCC-CCSCHHHHHHHH----HHHHHHHGGGCSS-CEEEEEESCCCSHHHH
T ss_pred cceeecC----------C---ccccEEEEecCC-CCCChhhhhhHH----HHHHHHHHHhccc-CCEEEEEccCCChhHH
Confidence 975422 2 567999999998 566666666543 3488899999999 899999999988 55
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEE
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLL 197 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvV 197 (832)
..+..|+..|..+.+.+|. ||++|.|+|+|
T Consensus 196 e~l~~lq~~fgg~lVR~P~-SRnsThEMY~V 225 (267)
T 3p8z_A 196 EHLERLQRKHGGMLVRNPL-SRNSTHEMYWI 225 (267)
T ss_dssp HHHHHHHHHHCCEEECCTT-SCTTCCCEEEE
T ss_pred HHHHHHHHHhCCEeEeCCC-CCCCcceEEEE
Confidence 6788889999999999999 99999999999
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-24 Score=228.66 Aligned_cols=161 Identities=20% Similarity=0.168 Sum_probs=134.6
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeC----CC--CC-----CC--CCceE
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDL----VP--IA-----PI--RGAVS 86 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDL----sp--~~-----~i--~~V~~ 86 (832)
.+||+|++|||.+++.+ .++.++.+|||||||||+|+++|+++ +.|+|||+ ++ +. +. ++|.+
T Consensus 61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~ 135 (305)
T 2p41_A 61 HHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRL 135 (305)
T ss_dssp SCCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEE
T ss_pred CCccccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHHhhhcCCCCeEE
Confidence 47899999999999888 77889999999999999999999987 37999999 33 21 22 56888
Q ss_pred EEc-cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC-
Q 003302 87 LEQ-DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD- 164 (832)
Q Consensus 87 i~g-DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d- 164 (832)
+++ |++.++ ...||+|+||++++ .+.|..++..+ +.+|..+.++|+|||+|++++|.+..
T Consensus 136 ~~~~D~~~l~-------------~~~fD~V~sd~~~~-~g~~~~d~~~~----l~~L~~~~~~LkpGG~~v~kv~~~~~~ 197 (305)
T 2p41_A 136 QSGVDVFFIP-------------PERCDTLLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFCVKVLNPYMS 197 (305)
T ss_dssp ECSCCTTTSC-------------CCCCSEEEECCCCC-CSSHHHHHHHH----HHHHHHHHHHCCTTCEEEEEESCCCSH
T ss_pred EeccccccCC-------------cCCCCEEEECCccc-cCcchhhHHHH----HHHHHHHHHHhCCCCEEEEEeCCCCCc
Confidence 898 888642 15789999999987 67777766543 24778889999999999999998854
Q ss_pred -HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 165 -YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 165 -~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
...++..+..+|..|.+.+| +||..++|+|+||.||...
T Consensus 198 ~~~~~l~~l~~~f~~v~~~kP-~sR~~s~E~y~v~~~~~~~ 237 (305)
T 2p41_A 198 SVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGNI 237 (305)
T ss_dssp HHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCCH
T ss_pred hHHHHHHHHHHHcCCEEEecC-CCCCccHHHHHHHhccCCc
Confidence 45788888999999999999 9999999999999999753
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=219.60 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=137.9
Q ss_pred CCCCEEEEEcC------CcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCA------APGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGc------GPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.|++|||||| +||+| ++.+..|.++.||++||.++...+++ +++||+++... .++||+
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~-~IqGD~~~~~~------------~~k~DL 172 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADS-TLIGDCATVHT------------ANKWDL 172 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSE-EEESCGGGEEE------------SSCEEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCe-EEEcccccccc------------CCCCCE
Confidence 46899999996 99995 67777665579999999999877774 59999876321 167899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcce
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEI 194 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEi 194 (832)
|+||++||.+|.-..+......|+..++..|.++|+|||.|++|||.+... ..+..+.++|..|+++| .+||..|+|+
T Consensus 173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~-~~L~~lrk~F~~VK~fK-~ASRa~SsEv 250 (344)
T 3r24_A 173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN-ADLYKLMGHFSWWTAFV-TNVNASSSEA 250 (344)
T ss_dssp EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC-HHHHHHHTTEEEEEEEE-EGGGTTSSCE
T ss_pred EEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH-HHHHHHHhhCCeEEEEC-CCCCCCCeeE
Confidence 999999999998666666677899999999999999999999999999884 55666778999999997 5999999999
Q ss_pred eEEEeeccCC--CCCCCCccchhhhcc
Q 003302 195 YLLGIKYKAP--AKIDPRLLDVKYLFQ 219 (832)
Q Consensus 195 yvVc~gfk~p--~~id~~~ldp~~vf~ 219 (832)
|+||.||+++ ..||...+...|||=
T Consensus 251 YLVG~gfKg~~~~~idg~~~hanyifw 277 (344)
T 3r24_A 251 FLIGANYLGKPKEQIDGYTMHANYIFW 277 (344)
T ss_dssp EEEEEEECSSCSSCCCHHHHHHHHHHH
T ss_pred EEEeeeccCCCceeeccceeeeeeEEe
Confidence 9999999997 348888999999993
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-23 Score=218.67 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=130.1
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------CCCC------CceEE-
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------APIR------GAVSL- 87 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------~~i~------~V~~i- 87 (832)
.|++|++|||.++... .++.++.+|||||||||+|+++++++ +.|+|||+++| .+++ ++.++
T Consensus 62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~ 136 (276)
T 2wa2_A 62 HAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYTLGTSGHEKPRLVETFGWNLITFK 136 (276)
T ss_dssp ---CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEE
T ss_pred CcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECchhhhhhhhchhhhhhcCCCeEEEe
Confidence 5999999999999887 67789999999999999999999986 48999999997 3444 68899
Q ss_pred -EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc--EEEEEEcCCCC
Q 003302 88 -EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG--TFVTKVFRSQD 164 (832)
Q Consensus 88 -~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG--~fV~KVFrs~d 164 (832)
++|+++++ . +.||+|+||.+ ++.+.|..++..+ ..+|..+.++|+||| .|++++|.+..
T Consensus 137 ~~~D~~~l~----------~---~~fD~Vvsd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~~v~~~~~~~~ 198 (276)
T 2wa2_A 137 SKVDVTKME----------P---FQADTVLCDIG-ESNPTAAVEASRT----LTVLNVISRWLEYNQGCGFCVKVLNPYS 198 (276)
T ss_dssp CSCCGGGCC----------C---CCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHSTTCEEEEEESCCCS
T ss_pred ccCcHhhCC----------C---CCcCEEEECCC-cCCCchhhhHHHH----HHHHHHHHHHhccCCCcEEEEEeCCCCc
Confidence 99998632 1 67899999988 7777776665543 237788899999999 99999999543
Q ss_pred HH---HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 165 YS---SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 165 ~~---~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
. .++..+..+|..+.++ |.+||..|+|+|+||.++..
T Consensus 199 -~~~~~~l~~l~~~f~~v~v~-P~~sR~~s~E~y~v~~~~~~ 238 (276)
T 2wa2_A 199 -CDVLEALMKMQARFGGGLIR-VPLSRNSTHEMYFVSGIKNN 238 (276)
T ss_dssp -HHHHHHHHHHHHHHCCEEEC-CTTSCTTCCCEEEESSCCCC
T ss_pred -hhHHHHHHHHHHHcCCEEEE-cCCCCCcchheEEecccCCC
Confidence 4 6677888899999998 99999999999999987654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=205.98 Aligned_cols=158 Identities=21% Similarity=0.206 Sum_probs=130.2
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---CCC-------CCceEEEc-
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---API-------RGAVSLEQ- 89 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---~~i-------~~V~~i~g- 89 (832)
.||||++|||.+++++|. |.++.+|||||||||||+|+++...++ ..|+|+|+... .|. +.|+++++
T Consensus 74 ~y~SR~~~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~ 151 (321)
T 3lkz_A 74 HPVSRGTAKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGV 151 (321)
T ss_dssp CCSSTHHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCCCCCCCBTTGGGEEEECSC
T ss_pred CccchHHHHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccCcchhhhcCCcceEEEecc
Confidence 399999999999999964 578889999999999999999887664 48999999875 221 23777877
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEEEEcCCC--CHH
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTKVFRSQ--DYS 166 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~KVFrs~--d~~ 166 (832)
|+..+. . .+||+|+||.+ ..++.+..++... +.+|.++.++|++| |.|+||||.+. .+.
T Consensus 152 Dv~~l~----------~---~~~D~ivcDig-eSs~~~~ve~~Rt----l~vLel~~~wL~~~~~~f~~KVl~pY~~~v~ 213 (321)
T 3lkz_A 152 DVFYRP----------S---ECCDTLLCDIG-ESSSSAEVEEHRT----IRVLEMVEDWLHRGPREFCVKVLCPYMPKVI 213 (321)
T ss_dssp CTTSSC----------C---CCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHTTCCCEEEEEESCTTSHHHH
T ss_pred CHhhCC----------C---CCCCEEEEECc-cCCCChhhhhhHH----HHHHHHHHHHhccCCCcEEEEEcCCCChHHH
Confidence 886643 1 45799999998 6667766666543 34888999999999 99999999994 555
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEEEe
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGI 199 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~ 199 (832)
..+..|+..|..+.+.+|. ||+++.|+|+|.-
T Consensus 214 e~l~~lq~~fgg~lvr~P~-SRnst~EmY~vsG 245 (321)
T 3lkz_A 214 EKMELLQRRYGGGLVRNPL-SRNSTHEMYWVSR 245 (321)
T ss_dssp HHHHHHHHHHCCEEECCTT-SCTTCCCEEEETT
T ss_pred HHHHHHHHHhCCEeEeCCC-CCCCcceEEEEec
Confidence 6788899999999999999 9999999999853
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-21 Score=206.75 Aligned_cols=164 Identities=22% Similarity=0.278 Sum_probs=137.7
Q ss_pred cCCCCCCCEEEEEcC------CcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceE-EEccCCChhHHHHHHHHHhhccC
Q 003302 37 FSFLRSSHAVLDLCA------APGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVS-LEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 37 f~fl~~g~~VLDLGc------GPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~-i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+..+.++.+|||||| |||+ ++++.+++.++.|+|||+++. +++|.+ +++|++++.+ .
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--v~~v~~~i~gD~~~~~~------------~ 121 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--VSDADSTLIGDCATVHT------------A 121 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--BCSSSEEEESCGGGCCC------------S
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--CCCCEEEEECccccCCc------------c
Confidence 334688999999999 7788 777888887789999999998 678999 9999987431 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecCCCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKPAASR 188 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP~sSR 188 (832)
+.||+|+||++++..+.|..++..+..++..+|..+.++|+|||+|++++|.......+...|+.+ |..|.++ +||
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~---asr 198 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT---NVN 198 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE---GGG
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE---EcC
Confidence 578999999988877777766665566777899999999999999999999988888899999998 9888877 899
Q ss_pred CCCcceeEEEeeccCC--CCCCCCccchhhhcc
Q 003302 189 SASAEIYLLGIKYKAP--AKIDPRLLDVKYLFQ 219 (832)
Q Consensus 189 ~~SaEiyvVc~gfk~p--~~id~~~ldp~~vf~ 219 (832)
..++|+|+||.+|+++ ..+++.++++.|+|.
T Consensus 199 ~~s~e~~lv~~~~~~~~~~~i~~~~~h~~~i~~ 231 (290)
T 2xyq_A 199 ASSSEAFLIGANYLGKPKEQIDGYTMHANYIFW 231 (290)
T ss_dssp TTSSCEEEEEEEECSSCSSCCCHHHHHHHHHHH
T ss_pred CCchheEEecCCccCCCcccCCccccccceEEE
Confidence 9999999999999987 346788889999993
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=152.59 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=125.2
Q ss_pred cCCCC-CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHH
Q 003302 37 FSFLR-SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 37 f~fl~-~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~ 103 (832)
|.-+. ++.+|||||||+|.++..++.+.+ +.|+|||+++.. .+. ++.++++|+.+... .
T Consensus 43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~------~ 114 (259)
T 3lpm_A 43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD------L 114 (259)
T ss_dssp HCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG------T
T ss_pred HhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh------h
Confidence 33356 789999999999999999998854 399999999721 333 58999999987431 0
Q ss_pred HhhccCCcccEEEeCCCCCCC---CCchhHH------hHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 104 MEEHGVRAFDLVLHDGSPNVG---GAWAQEA------MSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~---g~w~~D~------~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
+ ..+.||+|++|++.... +....+. ......+..++..+.++|+|||+|++ ++++.....++..+..
T Consensus 115 ~---~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~l~~ 190 (259)
T 3lpm_A 115 I---PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF-VHRPERLLDIIDIMRK 190 (259)
T ss_dssp S---CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE-EECTTTHHHHHHHHHH
T ss_pred h---ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE-EEcHHHHHHHHHHHHH
Confidence 1 12678999999864332 1111111 11112345788899999999999999 7788888888888888
Q ss_pred cccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 175 LFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 175 ~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
+.-.+..+.|.+++..+...++++.+.++... ...+.+|+++++.-
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~~~-~~~~~~~l~i~~~~ 236 (259)
T 3lpm_A 191 YRLEPKRIQFVHPRSDREANTVLVEGIKDGKP-GVKYVPPVIVYDEL 236 (259)
T ss_dssp TTEEEEEEEEEESSTTSCCSEEEEEEEETCCS-CCEEEEEEECBCTT
T ss_pred CCCceEEEEEeecCCCCCcEEEEEEEEeCCCC-CCeecCCEEEECCC
Confidence 75566667788899999899999999987654 57889999998753
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=151.80 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=115.2
Q ss_pred EcCCcCHHHHHHHHhCCCCCEEEEEeCCC---------CCCCCCceEE-EccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 49 LCAAPGGWMQVAVQRVPVGSLVLGLDLVP---------IAPIRGAVSL-EQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 49 LGcGPGg~sq~La~~~p~~~~ViGVDLsp---------~~~i~~V~~i-~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
-.+++|-+...+.+.- +..|+-|+-.- |.|+++++++ ++|++.+... +.+|+|++|
T Consensus 148 ~~~~~~~~~~~~~k~~--g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~------------~k~DvV~SD 213 (320)
T 2hwk_A 148 NEHPQSDFSSFVSKLK--GRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDV------------PKYDIIFVN 213 (320)
T ss_dssp CCCCCCCCHHHHHTSS--CSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTS------------CCEEEEEEE
T ss_pred hccCCCCHHHHHhhCC--CcEEEEEecccccCCceeEeeccCCCceeecccccCCcccc------------CcCCEEEEc
Confidence 3456676777777663 45777775221 2367888888 8899986532 567999999
Q ss_pred CCCCCCCCc-h--hHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC--CHHHHHHHHHHcccceEEecCCCCCCCCcc
Q 003302 119 GSPNVGGAW-A--QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ--DYSSVLYCLKQLFEKVEVDKPAASRSASAE 193 (832)
Q Consensus 119 gapnv~g~w-~--~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~--d~~~ll~~L~~~F~~V~~~KP~sSR~~SaE 193 (832)
++|+..|++ . .||...+.| ++..|+.+|+|||+||+|+|... ....++..|.+.|..|.++||.+||. |+|
T Consensus 214 MApn~sGh~yqQC~DHarii~L---al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP~ASR~-StE 289 (320)
T 2hwk_A 214 VRTPYKYHHYQQCEDHAIKLSM---LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLE-ETE 289 (320)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHH---THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTCCS-TTC
T ss_pred CCCCCCCccccccchHHHHHHH---HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeCCCCccc-cce
Confidence 999999998 5 677776665 88999999999999999999998 57889999999999999999999999 999
Q ss_pred eeEEEeeccCCCC
Q 003302 194 IYLLGIKYKAPAK 206 (832)
Q Consensus 194 iyvVc~gfk~p~~ 206 (832)
+|+|+.||+++..
T Consensus 290 vf~La~gf~g~~r 302 (320)
T 2hwk_A 290 VLFVFIGYDRKAR 302 (320)
T ss_dssp EEEEEEEECCCCC
T ss_pred EEEEEEeecCCcc
Confidence 9999999999643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=149.33 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------------CCCC-CceEEEccCCChhHHHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------------APIR-GAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------------~~i~-~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+.++.+|||||||+|.++..++.+.+ ...|+|||+++. ..+. ++.++++|+.+.... .+...+
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~-~~~~~~ 111 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA-RVEAGL 111 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH-HHHTTC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh-hhhhcc
Confidence 45678999999999999999999976 579999999962 1222 388999999885210 000011
Q ss_pred hhccCCcccEEEeCCCCCCCC-CchhHHhHHh------HHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGG-AWAQEAMSQN------ALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g-~w~~D~~~q~------~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
. .+.||+|++|++....+ ....+..... ..+..++..+.++|+|||+|++ +++......++..+...|.
T Consensus 112 ~---~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~l~~~~~ 187 (260)
T 2ozv_A 112 P---DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL-ISRPQSVAEIIAACGSRFG 187 (260)
T ss_dssp C---TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE-EECGGGHHHHHHHHTTTEE
T ss_pred C---CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE-EEcHHHHHHHHHHHHhcCC
Confidence 1 26789999997643321 1111111111 1135678889999999999998 7777777788888877777
Q ss_pred ceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhccc
Q 003302 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQG 220 (832)
Q Consensus 178 ~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~ 220 (832)
.+.+. +..++......+++..+.+++.. ...+++|++++++
T Consensus 188 ~~~i~-~v~~~~~~~~~~~lv~~~k~~~~-~~~~~~~l~i~~~ 228 (260)
T 2ozv_A 188 GLEIT-LIHPRPGEDAVRMLVTAIKGSRA-RLTFRAPLIMHET 228 (260)
T ss_dssp EEEEE-EEESSTTSCCCEEEEEEEETCCC-CCEECCCEESSCT
T ss_pred ceEEE-EEcCCCCCCceEEEEEEEeCCCC-CceecCCEEEECC
Confidence 66655 45556666666666677766544 4688899999864
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=152.68 Aligned_cols=89 Identities=26% Similarity=0.255 Sum_probs=75.0
Q ss_pred cCchhHHHHHHHhhhhhcC-------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEE
Q 003302 20 HGYRSRASWKLVQLDSKFS-------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLE 88 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~-------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~ 88 (832)
.++-|||+|||.++...|. +|.+|++||||||+|||||++|+++ ++.|+|||+.+|.+ .++|++++
T Consensus 182 ~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~~~l~~~~~V~~~~ 258 (375)
T 4auk_A 182 ADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMAQSLMDTGQVTWLR 258 (375)
T ss_dssp TTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCCHHHHTTTCEEEEC
T ss_pred CCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcChhhccCCCeEEEe
Confidence 4577999999999887774 4789999999999999999999987 57999999999874 58999999
Q ss_pred ccCCChhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 89 QDITKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 89 gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
+|+..... . .+.||+|+||++++
T Consensus 259 ~d~~~~~~--------~---~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 259 EDGFKFRP--------T---RSNISWMVCDMVEK 281 (375)
T ss_dssp SCTTTCCC--------C---SSCEEEEEECCSSC
T ss_pred CccccccC--------C---CCCcCEEEEcCCCC
Confidence 99877431 1 15789999999764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=138.79 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=97.5
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDI 91 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDI 91 (832)
.|+++.+-.|++....+. +++|.+|||||||||+|+.+++..+++.+.|+|||+++.. ..+++.++++|+
T Consensus 56 ~~~skla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da 134 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADA 134 (232)
T ss_dssp TTTCHHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCT
T ss_pred hHHHHHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccc
Confidence 467777777776554433 5789999999999999999999998878899999999821 236899999999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---------
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--------- 162 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--------- 162 (832)
+.+.... ...+.||+|++|+++ .+.. ..++..+.++|+|||+|++.+...
T Consensus 135 ~~~~~~~--------~~~~~~D~I~~d~a~-------~~~~------~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~ 193 (232)
T 3id6_C 135 RFPQSYK--------SVVENVDVLYVDIAQ-------PDQT------DIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPK 193 (232)
T ss_dssp TCGGGTT--------TTCCCEEEEEECCCC-------TTHH------HHHHHHHHHHEEEEEEEEEEEC-------CCSS
T ss_pred ccchhhh--------ccccceEEEEecCCC-------hhHH------HHHHHHHHHhCCCCeEEEEEEccCCcccCCCHH
Confidence 8754211 012578999999763 1111 122345666999999999865322
Q ss_pred CCHHHHHHHHHHc-ccceEEe
Q 003302 163 QDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 163 ~d~~~ll~~L~~~-F~~V~~~ 182 (832)
..+....+.|... |.-+..+
T Consensus 194 e~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 194 EIYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp SSTTHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 1234556666653 6655544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=132.41 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=104.2
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC-----CCCceEE-EccCC
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP-----IRGAVSL-EQDIT 92 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~-----i~~V~~i-~gDIt 92 (832)
..|.||++|||..+...|.+..++.+|||||||||+|+.+|++. + .+.|+|||+++ |.. .+++..+ ..|+.
T Consensus 63 ~~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~ 140 (291)
T 3hp7_A 63 LRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFR 140 (291)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGG
T ss_pred cccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHhCcccceecccCce
Confidence 46999999999999999998778899999999999999999886 2 46999999998 432 2455443 23554
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE---cCCCC-----
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV---FRSQD----- 164 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV---Frs~d----- 164 (832)
.... ..+. ...||+|++|.++. +. ..+|..+.++|+|||+||+.+ |....
T Consensus 141 ~l~~-----~~l~---~~~fD~v~~d~sf~-----sl---------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~ 198 (291)
T 3hp7_A 141 YAEP-----VDFT---EGLPSFASIDVSFI-----SL---------NLILPALAKILVDGGQVVALVKPQFEAGREQIGK 198 (291)
T ss_dssp GCCG-----GGCT---TCCCSEEEECCSSS-----CG---------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-
T ss_pred ecch-----hhCC---CCCCCEEEEEeeHh-----hH---------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCC
Confidence 3221 0111 13489999997532 11 245678899999999999963 32110
Q ss_pred -------------HHHHHHHHHHc-ccceEE-ecCCCCCCCCcceeEEEee
Q 003302 165 -------------YSSVLYCLKQL-FEKVEV-DKPAASRSASAEIYLLGIK 200 (832)
Q Consensus 165 -------------~~~ll~~L~~~-F~~V~~-~KP~sSR~~SaEiyvVc~g 200 (832)
...+...+... |.-..+ .-|.....++-|.++.+..
T Consensus 199 ~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 199 NGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhhh
Confidence 01122233333 543333 3466666777787776643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=133.71 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||||+++.+++..++..+.|+|+|+++.. .++++.++++|+++... +
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~-------~---- 184 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-------L---- 184 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-------G----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-------c----
Confidence 4678999999999999999999998767899999999721 34678999999987431 1
Q ss_pred CCcccEEEeCCCCCCCCCch----------hHH-hHHhHHHHHHHHHHHhhcccCcEEEEEEcC---CCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWA----------QEA-MSQNALVIDSVKLATQFLAPKGTFVTKVFR---SQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~----------~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr---s~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+. ... .....++..+|..+.++|+|||+||+.+.. ..+...+.+++..
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~ 264 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhc
Confidence 15789999998755444322 111 112344568889999999999999985542 3344445566665
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 265 ~ 265 (315)
T 1ixk_A 265 F 265 (315)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-11 Score=115.28 Aligned_cols=109 Identities=9% Similarity=0.086 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++.. ++.|+|||+++.. .++++.++++++.... ...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~----------~~~ 86 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD----------HYV 86 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG----------GTC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH----------hhc
Confidence 578999999999999999999987 5799999999721 3467888887776532 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
.++||+|+++......+. ............+|..+.++|+|||+|++.+|.+.
T Consensus 87 ~~~fD~v~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 139 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSAD--KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH 139 (185)
T ss_dssp CSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred cCCcCEEEEeCCCCCCcc--hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 267999999842110000 00001112235678899999999999999887643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=137.45 Aligned_cols=124 Identities=20% Similarity=0.249 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+|.+|||||||||+++.+++..++..+.|+|+|+++.. .+.+|.++++|++.... .+ .+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~------~~----~~ 186 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA------AV----PE 186 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH------HS----TT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh------hc----cc
Confidence 88999999999999999999998777899999999721 35678999999987431 01 15
Q ss_pred cccEEEeCCCCCCCCC----------chhHHh-HHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHHHc
Q 003302 111 AFDLVLHDGSPNVGGA----------WAQEAM-SQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLKQL 175 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~----------w~~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~~~ 175 (832)
.||+|++|+++...|. |..... ....++..+|..|.++|+|||+||+.+. ...+...+.+++..+
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~ 265 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHC
Confidence 7899999987643333 222221 2234567889999999999999998653 334444556777765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=138.72 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||||||||+++.+++..++..+.|+|||+++.. .+.+|.++++|+.... ..+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~------~~~---- 172 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV------PHF---- 172 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH------HHH----
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh------hhc----
Confidence 4678999999999999999999998877899999999721 3567888888876532 112
Q ss_pred CCcccEEEeCCCCCCCCCchhHH----------h-HHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEA----------M-SQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~----------~-~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+..++ . ....++..+|..|.++|+|||+||+.+. ...+...+.+++..
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~ 252 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN 252 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHh
Confidence 16789999998765555432211 1 1224556889999999999999997433 33455556677776
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 253 ~ 253 (456)
T 3m4x_A 253 Y 253 (456)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=128.25 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||+|||||+++.+++..++..+.|+|||+++.. .++++.++++|++.... .+.. .
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~------~~~~-~ 153 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD------YLLK-N 153 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH------HHHH-T
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch------hhhh-c
Confidence 3678999999999999999999988755899999999721 34578999999875421 1100 1
Q ss_pred CCcccEEEeCCCCCCCCCc------hhHHhH-HhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHHHc
Q 003302 109 VRAFDLVLHDGSPNVGGAW------AQEAMS-QNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLKQL 175 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w------~~D~~~-q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~~~ 175 (832)
.+.||+|++|+++...|.+ ...... ...++..+|..+.++|+|||+||+.+. ...+...+.+.+..+
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~ 230 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR 230 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence 2678999999875543432 222211 113346778899999999999998653 234444455666554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=122.80 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++..+| ...|+|||+++.. .++++.++++|+.+.. . .
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~---~ 174 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------A---G 174 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------T---T
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------c---c
Confidence 4678999999999999999998876 6799999999721 3457999999997631 1 1
Q ss_pred CcccEEEeCCCCCCCCCch-------hHH-------hHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWA-------QEA-------MSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~-------~D~-------~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
+.||+|+++++....+... .++ .........++..+.++|+|||+|++.+ .......+...+...
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~l~~~ 253 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQQGEAVRQAFILA 253 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSSCHHHHHHHHHHT
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CchHHHHHHHHHHHC
Confidence 6789999997533211100 000 0011334677888999999999999843 444456676777655
Q ss_pred -ccceEEecCCCCCCCCcceeEEEeec
Q 003302 176 -FEKVEVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 176 -F~~V~~~KP~sSR~~SaEiyvVc~gf 201 (832)
|..+.+.+..+.+ .++++++.|
T Consensus 254 Gf~~v~~~~d~~g~----~r~~~~~~~ 276 (276)
T 2b3t_A 254 GYHDVETCRDYGDN----ERVTLGRYY 276 (276)
T ss_dssp TCTTCCEEECTTSS----EEEEEEECC
T ss_pred CCcEEEEEecCCCC----CcEEEEEEC
Confidence 8888888776655 477777644
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=138.77 Aligned_cols=125 Identities=21% Similarity=0.194 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||||||||+++.+++..++..+.|+|||+++.. .+. |.++++|++... ..+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~------~~~---- 167 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA------EAF---- 167 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH------HHH----
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh------hhc----
Confidence 4678999999999999999999999877899999999721 345 888888876532 111
Q ss_pred CCcccEEEeCCCCCCCCCch----------hHHh-HHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWA----------QEAM-SQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~----------~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+. .+.. ....++..+|..|.++|+|||+||+.+. ...+...+.+++..
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~ 247 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA 247 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHH
Confidence 16789999998765434321 1111 2234567889999999999999997443 33455556677776
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 248 ~ 248 (464)
T 3m6w_A 248 H 248 (464)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=117.07 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=96.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++..+++.+.|+|||+++.. .+ +++.++++|+.+... .
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 89 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK----------Y 89 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG----------T
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh----------h
Confidence 4688999999999999999999987656799999999721 22 578999999876431 1
Q ss_pred cCCcccEEEeCCCCCCCC-CchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC-----HHHHHHHHHHcc---cc
Q 003302 108 GVRAFDLVLHDGSPNVGG-AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD-----YSSVLYCLKQLF---EK 178 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g-~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d-----~~~ll~~L~~~F---~~ 178 (832)
..+.||+|+++++....+ .+.... ......++..+.++|+|||+|++.+|.+.. ...+...+..+- -.
T Consensus 90 ~~~~fD~v~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (197)
T 3eey_A 90 IDCPVKAVMFNLGYLPSGDHSISTR---PETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFI 166 (197)
T ss_dssp CCSCEEEEEEEESBCTTSCTTCBCC---HHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEE
T ss_pred ccCCceEEEEcCCcccCcccccccC---cccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEE
Confidence 126789999996431111 111111 112345788999999999999998765431 122222222221 12
Q ss_pred eEEecCCCCCCCCcceeEEEeeccCCC
Q 003302 179 VEVDKPAASRSASAEIYLLGIKYKAPA 205 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~gfk~p~ 205 (832)
+..+.. ..+...+..++|+++...|.
T Consensus 167 v~~~~~-~~~~~~pp~~~~~~~~~~~~ 192 (197)
T 3eey_A 167 VQRTDF-INQANCPPILVCIEKISEGH 192 (197)
T ss_dssp EEEEEE-TTCCSCCCEEEEEEECCSSC
T ss_pred EEEEEe-ccCccCCCeEEEEEEccccc
Confidence 222222 23445667777777766553
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.3e-11 Score=116.76 Aligned_cols=151 Identities=14% Similarity=0.012 Sum_probs=90.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC-----CC----CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP-----IR----GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~-----i~----~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
..++.+|||+|||+|.++..++...+ ++.|+|||+++. .. +. ++.++++|+.++ +.... ...
T Consensus 28 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~--~~~ 99 (215)
T 4dzr_A 28 MPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW-----LIERA--ERG 99 (215)
T ss_dssp CCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHH-----HHHHH--HTT
T ss_pred cCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh-----hhhhh--hcc
Confidence 36788999999999999999999875 679999999973 21 11 355566665541 11100 012
Q ss_pred CcccEEEeCCCCCCCCCchh-H-Hh-------------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH-
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-E-AM-------------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK- 173 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-D-~~-------------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~- 173 (832)
+.||+|++|++......+.. . .. ........++..+.++|+|||+|++..+.......+...+.
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~ 179 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAP 179 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGG
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHH
Confidence 67899999986433221110 0 00 00112256778889999999995444555555666666665
Q ss_pred --HcccceEEecCCCCCCCCcceeEEEeecc
Q 003302 174 --QLFEKVEVDKPAASRSASAEIYLLGIKYK 202 (832)
Q Consensus 174 --~~F~~V~~~KP~sSR~~SaEiyvVc~gfk 202 (832)
..|..+.+++....+ ..++++....
T Consensus 180 ~~~gf~~~~~~~~~~~~----~r~~~~~~~~ 206 (215)
T 4dzr_A 180 WRERGFRVRKVKDLRGI----DRVIAVTREP 206 (215)
T ss_dssp GGGGTEECCEEECTTSC----EEEEEEEECC
T ss_pred hhcCCceEEEEEecCCC----EEEEEEEEcC
Confidence 347777777665544 5666665443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=123.55 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCC-CC-----------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVP-IA-----------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp-~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
++++|.+|||||||+|.++..+++..+ +++.|+|||+++ |. ...+|.++++|+++.+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~---------- 136 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------- 136 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC----------
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc----------
Confidence 368999999999999999999998864 466999999997 21 1246899999998743
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
...||+|++.... +|..+. -...+|+.+.++|+|||+|++..+.
T Consensus 137 ---~~~~d~v~~~~~l----~~~~~~-----~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 137 ---IENASMVVLNFTL----QFLEPS-----ERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp ---CCSEEEEEEESCG----GGSCHH-----HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ---ccccccceeeeee----eecCch-----hHhHHHHHHHHHcCCCcEEEEEecc
Confidence 2568999997531 222221 1245788999999999999986443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=122.01 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C--------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I--------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++||.+|||||||+|.++.++|..+++.++|+|||+++ | ...+|+.++.+|+.++... . ....
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~-------~-~~~~ 146 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKY-------R-HLVE 146 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGG-------T-TTCC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccc-------c-cccc
Confidence 68999999999999999999999998899999999997 2 1357899999999886421 1 1236
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+++.+. .|. ...++..+.++|+|||.|++.+
T Consensus 147 ~vDvVf~d~~~----~~~---------~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 147 GVDGLYADVAQ----PEQ---------AAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CEEEEEECCCC----TTH---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEEeccC----Chh---------HHHHHHHHHHhccCCCEEEEEE
Confidence 78999998531 111 1346778999999999999854
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=112.94 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC--ceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG--AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~--V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||+|||+|.++..++.. +..|+|+|+++.. .+++ +.++++|+.+.. .
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------~-- 116 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---------K-- 116 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---------T--
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc---------c--
Confidence 47889999999999999999887 5699999999721 3455 899999998732 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
.+.||+|+++++.. |.. .....++..+.++|+|||+|++.++.......+...|...|..+.++
T Consensus 117 -~~~~D~v~~~~~~~----~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (194)
T 1dus_A 117 -DRKYNKIITNPPIR----AGK------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp -TSCEEEEEECCCST----TCH------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred -cCCceEEEECCCcc----cch------hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEE
Confidence 16789999986422 211 12346778889999999999997777666566788888888888876
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.8e-11 Score=123.60 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=85.5
Q ss_pred CchHHHHHHhc-CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----CCCCC
Q 003302 10 LDKYYRLAKEH-GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----APIRG 83 (832)
Q Consensus 10 ~D~yy~~Ake~-gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----~~i~~ 83 (832)
.|+|...|... -||....-.|++....+ ...+.+|||||||+|.++..|+.. ...|+|||+++ | ...++
T Consensus 8 ~d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~--~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~~~ 82 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRPRYPRALFRWLGEV--APARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRHPR 82 (257)
T ss_dssp ------------CCCCCCCHHHHHHHHHH--SSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHh--cCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhcCC
Confidence 46666655432 23432111233322222 245678999999999999999876 45899999997 2 24678
Q ss_pred ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 84 AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 84 V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
|.++++|+.+.+ +. .++||+|+|..+. +|. +. ..++..+.++|+|||+|++-.+...
T Consensus 83 v~~~~~~~e~~~--------~~---~~sfD~v~~~~~~----h~~-~~-------~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 83 VTYAVAPAEDTG--------LP---PASVDVAIAAQAM----HWF-DL-------DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEEECCTTCCC--------CC---SSCEEEEEECSCC----TTC-CH-------HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ceeehhhhhhhc--------cc---CCcccEEEEeeeh----hHh-hH-------HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 999999998754 22 2789999997653 343 21 2467789999999999998666443
Q ss_pred C-HHHHHHHHHHcc
Q 003302 164 D-YSSVLYCLKQLF 176 (832)
Q Consensus 164 d-~~~ll~~L~~~F 176 (832)
. ...+..++.+++
T Consensus 140 ~~~~~~~~~~~~~~ 153 (257)
T 4hg2_A 140 RVDPEVDAVVDRLY 153 (257)
T ss_dssp BCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 2 244445555544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-10 Score=115.35 Aligned_cols=135 Identities=11% Similarity=-0.013 Sum_probs=88.9
Q ss_pred CCCCCCEEEEEcCC-cCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAA-PGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcG-PGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
++.++.+||||||| +|.++..++... ++.|+|||+++.. .+ ++.++++|+..... +.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~-------~~- 120 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG-------VV- 120 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT-------TC-
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh-------cc-
Confidence 35788999999999 999999999875 5699999999721 23 78999999754321 11
Q ss_pred ccCCcccEEEeCCCCCCCCCchh-HHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHHccc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQ-EAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQLFE 177 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~-D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~~F~ 177 (832)
.+.||+|++|++......... ... ....+...++..+.++|+|||+|++.+... .....+...+..+.-
T Consensus 121 --~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 121 --EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY 198 (230)
T ss_dssp --CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred --cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC
Confidence 267899999976432111000 000 011223577889999999999999854333 234566677776644
Q ss_pred ceEEecCCC
Q 003302 178 KVEVDKPAA 186 (832)
Q Consensus 178 ~V~~~KP~s 186 (832)
.+..+....
T Consensus 199 ~~~~~~~~~ 207 (230)
T 3evz_A 199 SVKDIKFKV 207 (230)
T ss_dssp EEEEEEECC
T ss_pred ceEEEEecC
Confidence 666655433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=132.84 Aligned_cols=127 Identities=19% Similarity=0.260 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||+|||||+++.+++..++..+.|+|+|+++.. .+++|.++++|++.... .+.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~------~~~--- 327 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE------IIG--- 327 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS------SSC---
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch------hhc---
Confidence 4678999999999999999999998755899999999721 35678999999987421 011
Q ss_pred CCcccEEEeCCCCCCCCCchh--H---------HhHHhHHHHHHHHHHHhhcccCcEEEEEEcC---CCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQ--E---------AMSQNALVIDSVKLATQFLAPKGTFVTKVFR---SQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~--D---------~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr---s~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+.. + ......++..+|..+..+|+|||+||+.++. ..+...+.+.+..
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~ 407 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 156899999987655444221 1 1112234467889999999999999975543 3344455666666
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 408 ~ 408 (450)
T 2yxl_A 408 H 408 (450)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=117.66 Aligned_cols=98 Identities=24% Similarity=0.221 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----C----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----A----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|.+|||||||||.++..++..++ .+.|+|||+++. . ..+++.++++|++.+... .. ..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~-------~~-~~~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY-------SG-IVE 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT-------TT-TCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh-------cc-ccc
Confidence 46889999999999999999999987 679999999972 1 235788899999874210 00 116
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+++.+. .+. ...++..+.++|+|||+|++.+
T Consensus 126 ~fD~V~~~~~~-------~~~------~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIAQ-------KNQ------IEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEeccC-------hhH------HHHHHHHHHHHhCCCCEEEEEE
Confidence 78999998421 111 1234678899999999999964
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=126.02 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||||+++.+++..++..+.|+|+|+++.. .+.+|.++++|++..... .. .
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~------~~--~ 171 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS------DP--R 171 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT------CG--G
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc------cc--c
Confidence 4678999999999999999999988767899999999721 356789999998764210 00 0
Q ss_pred CCcccEEEeCCCCCCCCCchh--HH-----------hHHhHHHHHHHHHHHhhcccCcEEEEEE---cCCCCHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQ--EA-----------MSQNALVIDSVKLATQFLAPKGTFVTKV---FRSQDYSSVLYCL 172 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~--D~-----------~~q~~L~~~aLk~A~~~LkpGG~fV~KV---Frs~d~~~ll~~L 172 (832)
...||+|++|+++...|.+.. +. .....++..+|..|..+|+ ||+||+.+ +...+...+.+.|
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l 250 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDAL 250 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHH
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHH
Confidence 146899999987765554322 21 1122445677888888886 99999753 3445555566666
Q ss_pred HHc
Q 003302 173 KQL 175 (832)
Q Consensus 173 ~~~ 175 (832)
..+
T Consensus 251 ~~~ 253 (309)
T 2b9e_A 251 QQN 253 (309)
T ss_dssp TTS
T ss_pred HhC
Confidence 654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=114.40 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++...| .+.|+|||+++.. .++++.++++|+.... ..
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~-- 105 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL---------DD-- 105 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC---------TT--
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh---------hc--
Confidence 46789999999999999999999865 6799999999721 3467999999986531 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
...||+|+++++.. ....++..+.++|+|||+|++..+.......+...+... | .+.+.
T Consensus 106 ~~~~D~i~~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~ 165 (204)
T 3e05_A 106 LPDPDRVFIGGSGG--------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVEVA 165 (204)
T ss_dssp SCCCSEEEESCCTT--------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCCCCEEEECCCCc--------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-ceeEE
Confidence 15689999987531 123567789999999999999766555555666666655 5 55544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=118.02 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=85.9
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----C----CCCCceEEEccC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----A----PIRGAVSLEQDI 91 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~----~i~~V~~i~gDI 91 (832)
.++++.+..+......+. +.++.+|||||||+|.++..++...++.+.|+|||+++. . ..+++.++++|+
T Consensus 57 ~~~~~~~~~~~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~ 135 (233)
T 2ipx_A 57 PFRSKLAAAILGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDA 135 (233)
T ss_dssp TTTCHHHHHHHTTCSCCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCT
T ss_pred ccchhHHHHHHhHHheec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEccc
Confidence 467787777776444443 567899999999999999999998755679999999952 1 126899999999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+... +.. ..+.||+|+++.+ . .+. ...++..+.++|+|||+|++.++.
T Consensus 136 ~~~~~-------~~~-~~~~~D~V~~~~~----~---~~~------~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 136 RHPHK-------YRM-LIAMVDVIFADVA----Q---PDQ------TRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp TCGGG-------GGG-GCCCEEEEEECCC----C---TTH------HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CChhh-------hcc-cCCcEEEEEEcCC----C---ccH------HHHHHHHHHHHcCCCeEEEEEEcc
Confidence 87431 111 1267899999864 1 111 123456689999999999996653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-11 Score=124.92 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=99.2
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..+.++.+|||||||+|.|+..++...+ .+.|+|||+++. ..+.++.++++|+.+.. .
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~--------- 183 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L--------- 183 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C---------
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c---------
Confidence 3467889999999999999999999875 579999999962 23567899999998641 0
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-----CCHHHHHHHHHHc-ccceE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-----QDYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-----~d~~~ll~~L~~~-F~~V~ 180 (832)
...||+|++|++.. . ...+..+.++|+|||+|++..+.. .....++..+... ...+.
T Consensus 184 --~~~~D~Vi~d~p~~------~---------~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 184 --KDVADRVIMGYVHK------T---------HKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp --TTCEEEEEECCCSS------G---------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred --cCCceEEEECCccc------H---------HHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 15789999997631 1 124556789999999999877654 2334445555543 34566
Q ss_pred EecCCCCCCCCcceeEEEeecc
Q 003302 181 VDKPAASRSASAEIYLLGIKYK 202 (832)
Q Consensus 181 ~~KP~sSR~~SaEiyvVc~gfk 202 (832)
+..+...|..+...|.+|..|+
T Consensus 247 ~~~~~~v~~~~p~~~~~~~d~~ 268 (272)
T 3a27_A 247 DYEVRKIKKYAPGVWHVVVDAK 268 (272)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE
T ss_pred EeEEEEEEEECCCCCEEEEEEE
Confidence 6656666666667888888776
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9e-10 Score=124.13 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||||+++.+++..++. +.|+|+|+++.. .+ ++.++++|++.... .+..
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~------~~~~--- 313 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQ------WCGE--- 313 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHH------HHTT---
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchh------hccc---
Confidence 67899999999999999999999874 899999999842 12 47889999987531 1222
Q ss_pred CcccEEEeCCCCCCCCCchh--H---------HhHHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ--E---------AMSQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~--D---------~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~~~ 175 (832)
+.||+|++|+++...|.+.. + ......++..+|..+.++|+|||+||+.+. ...+...+.+.+..+
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~ 393 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 393 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence 57899999987654443211 1 111224456788999999999999998653 333444455666654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=105.42 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||+|||+|.++..++.. +..|+|||+++.. ..+++.++++|+.+.. +. .+.||
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~--------~~---~~~~D 109 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQ--------IS---ETDFD 109 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSC--------CC---CCCEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCC--------CC---CCcee
Confidence 568899999999999999999886 4699999999721 2467899999998743 11 26789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC--CHHHHHHHHHHc-ccceEEecCCCCC
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ--DYSSVLYCLKQL-FEKVEVDKPAASR 188 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~--d~~~ll~~L~~~-F~~V~~~KP~sSR 188 (832)
+|++++... .+... .....+|..+.++|+|||.|++.+.... ....+...+... |..+........+
T Consensus 110 ~i~~~~~~~---~~~~~-----~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 179 (195)
T 3cgg_A 110 LIVSAGNVM---GFLAE-----DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLK 179 (195)
T ss_dssp EEEECCCCG---GGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCC
T ss_pred EEEECCcHH---hhcCh-----HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccC
Confidence 999984311 11110 1134677888999999999999765443 566777777655 7777665554333
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-10 Score=114.22 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . ..+++.++++|+.+... .+.||+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~------------~~~fD~ 113 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL------------GRRFSA 113 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC------------SCCEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc------------cCCcCE
Confidence 56789999999999999998876 458999999972 1 24589999999987531 267899
Q ss_pred EEeCC-CCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDG-SPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDg-apnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|.+ ... |..+ ......+|..+.++|+|||+|++.
T Consensus 114 v~~~~~~l~----~~~~----~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 114 VTCMFSSIG----HLAG----QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp EEECTTGGG----GSCH----HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEEcCchhh----hcCC----HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99975 321 1111 122356788899999999999984
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-10 Score=114.93 Aligned_cols=95 Identities=23% Similarity=0.223 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
++.+|||||||+|.++..++...+ ..|+|||+++. ...+++.++++|+.+.+ +. .+.||
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~---~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA--------IE---PDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC--------CC---TTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC--------CC---CCCeE
Confidence 688999999999999999988732 38999999972 12467999999997643 11 26789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+|++..... +..+ ...+|..+.++|+|||+|++.++
T Consensus 111 ~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 111 VVLSSLALH----YIAS-------FDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEchhhh----hhhh-------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999976421 1111 24677889999999999999643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-10 Score=115.51 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=79.5
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC-----CCCceEEE-ccCC
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP-----IRGAVSLE-QDIT 92 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~-----i~~V~~i~-gDIt 92 (832)
..|.+|+.+||..+...|.+..++.+|||||||||+++..+++. + ...|+|||+++ |.. .+.+.... .++.
T Consensus 15 ~~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~ 92 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFR 92 (232)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGG
T ss_pred CCccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCccccccccceEE
Confidence 46999999999999999887667889999999999999999987 2 34999999998 432 23332221 1222
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.... ..+. ...||.+.+|..... . ..+|..+.++|+|||+|++.+
T Consensus 93 ~~~~-----~~~~---~~~~d~~~~D~v~~~-----l---------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 93 NAVL-----ADFE---QGRPSFTSIDVSFIS-----L---------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GCCG-----GGCC---SCCCSEEEECCSSSC-----G---------GGTHHHHHHHSCTTCEEEEEE
T ss_pred EeCH-----hHcC---cCCCCEEEEEEEhhh-----H---------HHHHHHHHHhccCCCEEEEEE
Confidence 1100 0011 123577777754221 1 246778899999999999853
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=113.39 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||+|||+|.++..++...| ++.|+|||+++. ..++++.++++|+.+.. ..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~ 131 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------------SEP 131 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------------CCS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC------------ccC
Confidence 478999999999999999998876 679999999972 13456899999998742 126
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~ 190 (832)
.||+|++++.. . ...++..+.++|+|||+|++.. .......+..++. .|..+.+.....+...
T Consensus 132 ~~D~i~~~~~~------~---------~~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 194 (207)
T 1jsx_A 132 PFDGVISRAFA------S---------LNDMVSWCHHLPGEQGRFYALK-GQMPEDEIALLPE-EYQVESVVKLQVPALD 194 (207)
T ss_dssp CEEEEECSCSS------S---------HHHHHHHHTTSEEEEEEEEEEE-SSCCHHHHHTSCT-TEEEEEEEEEECC--C
T ss_pred CcCEEEEeccC------C---------HHHHHHHHHHhcCCCcEEEEEe-CCCchHHHHHHhc-CCceeeeeeeccCCCC
Confidence 78999987421 0 1356778899999999999843 3333344333333 3444442211222223
Q ss_pred CcceeEEEe
Q 003302 191 SAEIYLLGI 199 (832)
Q Consensus 191 SaEiyvVc~ 199 (832)
....++++.
T Consensus 195 ~~~~~~~~~ 203 (207)
T 1jsx_A 195 GERHLVVIK 203 (207)
T ss_dssp CEEEEEEEE
T ss_pred CceEEEEEE
Confidence 334555554
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.2e-10 Score=110.02 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.+|||||||+|.++..++.. +..|+|||+++. . ..+++.++++|+.+.. +. .+.||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~~---~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLS--------DS---PKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG--------GS---CCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc--------cC---CCCeEEEE
Confidence 789999999999999999887 458999999972 1 2568999999998743 11 26789999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC---------------CHHHHHHHHHHc-ccceE
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ---------------DYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~---------------d~~~ll~~L~~~-F~~V~ 180 (832)
+...... +..+ ....+|..+.++|+|||+|++.++... +...+..+|... |..+.
T Consensus 108 ~~~~l~~---~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 108 AWYSLIH---MGPG------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp EESSSTT---CCTT------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred ehhhHhc---CCHH------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEE
Confidence 9864321 1111 124577889999999999999775442 245677777765 76666
Q ss_pred EecCCCCCCCCcceeEEEeeccCC
Q 003302 181 VDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 181 ~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+..- .. ..-.+++...+.++
T Consensus 179 ~~~~-~~---~p~~~l~~~~~~~~ 198 (203)
T 3h2b_A 179 SHWD-PR---FPHAYLTAEASLEH 198 (203)
T ss_dssp EEEC-TT---SSEEEEEEEECC--
T ss_pred EEec-CC---Ccchhhhhhhhhhh
Confidence 5422 11 33455555555544
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=124.03 Aligned_cols=125 Identities=22% Similarity=0.139 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------------CCCCceEEEccCCChhHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------------PIRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------------~i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
.++|.+|||+||||||.+.+++..++ ++.|+++|+++-. ...+|.+.+.|.+.+..
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~------ 218 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE------ 218 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH------
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch------
Confidence 36899999999999999999998775 5689999998521 11356777788776421
Q ss_pred HHhhccCCcccEEEeCCCCCCCCC----------c--hhHHhH-HhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHH
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGA----------W--AQEAMS-QNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYS 166 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~----------w--~~D~~~-q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~ 166 (832)
...+.||.||+|+++...|. | ...... ...++..+|..|..+|+|||++|.. ++..++-.
T Consensus 219 ----~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~ 294 (359)
T 4fzv_A 219 ----LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY 294 (359)
T ss_dssp ----HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHH
T ss_pred ----hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHH
Confidence 12267899999987654211 1 111111 2356678899999999999999964 34455655
Q ss_pred HHHHHHHHc
Q 003302 167 SVLYCLKQL 175 (832)
Q Consensus 167 ~ll~~L~~~ 175 (832)
.+.++|..+
T Consensus 295 vV~~~L~~~ 303 (359)
T 4fzv_A 295 VVQGAIELL 303 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 566777654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-10 Score=112.04 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++...| ++.|+|||+++.. .++++.++++|+.+... .+. .
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------~~~---~ 109 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD------YFE---D 109 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG------TSC---T
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh------hcC---C
Confidence 4578999999999999999999986 6799999999621 34689999999987431 121 2
Q ss_pred CcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 110 RAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
+.||+|+++.+. .|... +.........++..+.++|+|||+|++.+-.......++..|... |..+.+.
T Consensus 110 ~~~D~i~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 110 GEIDRLYLNFSD----PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp TCCSEEEEESCC----CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEEECCC----CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 568999998542 12111 111001124567788999999999998542211123344445433 5444444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-10 Score=108.45 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
.++.+|||||||+|.++..++... .|+|||+++. ...+++.++++|+.++. .. +.||+|+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~~~~~~~~~~d~~~~~---------~~---~~fD~i~~n 85 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALESHRGGNLVRADLLCSI---------NQ---ESVDVVVFN 85 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHTCSSSCEEECSTTTTB---------CG---GGCSEEEEC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhcccCCeEEECChhhhc---------cc---CCCCEEEEC
Confidence 356799999999999999998763 9999999972 12567999999998731 11 678999998
Q ss_pred CCCCCCCCc---hhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecCCCCCCCCcce
Q 003302 119 GSPNVGGAW---AQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKPAASRSASAEI 194 (832)
Q Consensus 119 gapnv~g~w---~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEi 194 (832)
++....... ... ... ...+..+.+.| |||+|++..........+...+... |..+.+..-.. .-+.
T Consensus 86 ~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~----~~e~ 155 (170)
T 3q87_B 86 PPYVPDTDDPIIGGG-YLG----REVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKI----LGET 155 (170)
T ss_dssp CCCBTTCCCTTTBCC-GGG----CHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEEC----SSSE
T ss_pred CCCccCCccccccCC-cch----HHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeecc----CCce
Confidence 753311100 000 000 12344556666 9999999766666667777777765 76666553322 2345
Q ss_pred eEEEeeccC
Q 003302 195 YLLGIKYKA 203 (832)
Q Consensus 195 yvVc~gfk~ 203 (832)
+++...++.
T Consensus 156 ~~~~~~~~~ 164 (170)
T 3q87_B 156 VYIIKGEKS 164 (170)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 556555554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=106.28 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=79.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++...| ++.|+|+|+++. ..++ ++ ++++|+... +...
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~---------~~~~ 91 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA---------FDDV 91 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG---------GGGC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh---------hhcc
Confidence 46788999999999999999998875 679999999972 1344 67 888887542 2211
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F 176 (832)
.+.||+|++++... + ..++..+.++|+|||+|++..+.......+...+..+.
T Consensus 92 -~~~~D~i~~~~~~~----~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 92 -PDNPDVIFIGGGLT----A-----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFG 144 (178)
T ss_dssp -CSCCSEEEECC-TT----C-----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred -CCCCCEEEECCccc----H-----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcC
Confidence 15689999986432 1 23566788999999999997766555556666666653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-09 Score=109.36 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||||||+|.++..++... ++.|+|||+++.. ..+++.++++|+.+.+ +. .+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--------~~---~~ 119 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE--------FP---EN 119 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC--------CC---TT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC--------CC---CC
Confidence 4678899999999999999999875 4699999999721 1268999999998753 11 26
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.||+|++..... +... .....+|..+.++|+|||+|++..+.
T Consensus 120 ~fD~v~~~~~l~----~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 120 NFDLIYSRDAIL----ALSL-----ENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp CEEEEEEESCGG----GSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cEEEEeHHHHHH----hcCh-----HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 789999975421 1100 12346788899999999999987653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=108.60 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..++.+|||||||+|.++..++.. +..|+|||+++. ...+++.++++|+.+.. ..+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------------~~~ 113 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS------------TAE 113 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC------------CSC
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC------------CCC
Confidence 456789999999999999999887 358999999962 12357999999998753 127
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---------CCHHHHHHHHHHcccceEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---------QDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---------~d~~~ll~~L~~~F~~V~~ 181 (832)
.||+|++..... |..+. ..+..+|..+.++|+|||+|++.++.. .....+...+...|..+..
T Consensus 114 ~fD~v~~~~~l~----~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 185 (216)
T 3ofk_A 114 LFDLIVVAEVLY----YLEDM----TQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEVER 185 (216)
T ss_dssp CEEEEEEESCGG----GSSSH----HHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEEE
T ss_pred CccEEEEccHHH----hCCCH----HHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhhccceEE
Confidence 789999985421 22211 223467888999999999999865322 2233445556555666654
Q ss_pred ec
Q 003302 182 DK 183 (832)
Q Consensus 182 ~K 183 (832)
+.
T Consensus 186 ~~ 187 (216)
T 3ofk_A 186 VQ 187 (216)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=108.16 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . ...++.++++|+.+... ........||+|
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~fD~v 120 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAE-------AKVPVGKDYDLI 120 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHT-------TCSCCCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcc-------cccccCCCccEE
Confidence 35689999999999999999877 458999999972 1 23567788887654310 001112459999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-------------------------------CC
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-------------------------------QD 164 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-------------------------------~d 164 (832)
++..... ..+ ...+|..+.++|+|||+|++.++.. .+
T Consensus 121 ~~~~~l~-----~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 121 CANFALL-----HQD-------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEESCCC-----SSC-------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECC
T ss_pred EECchhh-----hhh-------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEec
Confidence 9986533 111 1356778899999999999976521 13
Q ss_pred HHHHHHHHHHc-ccceEEecCCCCCCC-CcceeEEEe
Q 003302 165 YSSVLYCLKQL-FEKVEVDKPAASRSA-SAEIYLLGI 199 (832)
Q Consensus 165 ~~~ll~~L~~~-F~~V~~~KP~sSR~~-SaEiyvVc~ 199 (832)
...+..+|... |..+.+..|..+... ....++|++
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~ 225 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAE 225 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEee
Confidence 46677777765 887777766554432 234566654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.8e-10 Score=112.27 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++...++.+.|+|||+++.. .++++.++++|+.+.. +.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--------~~--- 103 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--------LP--- 103 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--------SC---
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--------CC---
Confidence 4678899999999999999999987556799999999721 3457999999998743 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC------------CHHHHHHHHHHc-
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ------------DYSSVLYCLKQL- 175 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~------------d~~~ll~~L~~~- 175 (832)
.+.||+|++..... +..+ ...+|..+.++|+|||+|++..+... +...+...|...
T Consensus 104 ~~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 172 (219)
T 3dh0_A 104 DNTVDFIFMAFTFH----ELSE-------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAG 172 (219)
T ss_dssp SSCEEEEEEESCGG----GCSS-------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTT
T ss_pred CCCeeEEEeehhhh----hcCC-------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCC
Confidence 26789999986422 1111 24567889999999999999654322 245667777765
Q ss_pred ccceEEe
Q 003302 176 FEKVEVD 182 (832)
Q Consensus 176 F~~V~~~ 182 (832)
|..+.+.
T Consensus 173 f~~~~~~ 179 (219)
T 3dh0_A 173 IRVGRVV 179 (219)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 7766654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=110.47 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++.. ++.|+|||+++. ..++ ++.++++|+.+.. ..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------~~- 119 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL---------AD- 119 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG---------TT-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc---------cc-
Confidence 467889999999999999999987 569999999972 1345 7999999997621 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
...||+|++++.. . .. ++..+.++|+|||+|++..+...+...+...+..+
T Consensus 120 -~~~~D~v~~~~~~------~---------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 120 -LPLPEAVFIGGGG------S---------QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH 170 (204)
T ss_dssp -SCCCSEEEECSCC------C---------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred -CCCCCEEEECCcc------c---------HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence 1468999998631 0 12 56778899999999999777666666666666665
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=108.69 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..++.+|||||||+|.++..++...| +..|+|||+++. ...+++.++++|+.+... . +
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----------~-~ 108 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF-----------E-E 108 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCC-----------C-S
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCC-----------C-C
Confidence 46789999999999999999999875 679999999972 123479999999987531 1 6
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.||+|++..... +..+. ....+|..+.++|+|||+|++..+....
T Consensus 109 ~fD~v~~~~~l~----~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 109 KYDMVVSALSIH----HLEDE-----DKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp CEEEEEEESCGG----GSCHH-----HHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred CceEEEEeCccc----cCCHH-----HHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 789999985421 22211 1235778899999999999987654443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=8.3e-10 Score=112.41 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCC-CceEEEccCCChhHHHHHHHHHhh-c
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIR-GAVSLEQDITKPECRARVKKVMEE-H 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~-~ 107 (832)
.++.+|||||||+|.++..++..++.++.|+|||+++. . .+. +|.++++|+.... ..+.. .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l------~~~~~~~ 130 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI------PQLKKKY 130 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG------GGTTTTS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH------HHHHHhc
Confidence 36789999999999999999998877889999999972 1 232 4899999975421 01110 0
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..+.||+|++|+... +..+ ....+..+ ++|+|||+||+.-........+...+...
T Consensus 131 ~~~~fD~V~~d~~~~----~~~~-------~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 186 (221)
T 3u81_A 131 DVDTLDMVFLDHWKD----RYLP-------DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS 186 (221)
T ss_dssp CCCCCSEEEECSCGG----GHHH-------HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred CCCceEEEEEcCCcc----cchH-------HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence 115789999996421 1111 12344445 99999999998544444445555555543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=113.08 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++...+ ++.|+|||+++ +. .+++|.++++|+.+.. +.....
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~~ 139 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG--------QRKDVR 139 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT--------TCTTTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc--------cccccc
Confidence 5678999999999999999998655 67999999997 21 3457999999986532 000002
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|++++.. + ...++..+.++|+|||+|++.
T Consensus 140 ~~fD~V~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 140 ESYDIVTARAVA--------R-------LSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp TCEEEEEEECCS--------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEEeccC--------C-------HHHHHHHHHHhcCCCCEEEEE
Confidence 678999997521 0 235677889999999999873
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.1e-10 Score=113.08 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=77.0
Q ss_pred hcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 36 KFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 36 kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
....+.++.+|||||||+|.++..++.. +..|+|||+++.. ...++.++++|+.+.. ..+. .+.|
T Consensus 35 ~l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~------~~~~---~~~f 102 (240)
T 3dli_A 35 YIPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGKFNVVKSDAIEYL------KSLP---DKYL 102 (240)
T ss_dssp GGGGTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTTSEEECSCHHHHH------HTSC---TTCB
T ss_pred HHhhhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcceeeccHHHHh------hhcC---CCCe
Confidence 3445678899999999999999999887 4579999999721 1123788888876521 0122 2678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
|+|+|..... |..+. .+..+|..+.++|+|||+|++.++....+.
T Consensus 103 D~i~~~~~l~----~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 147 (240)
T 3dli_A 103 DGVMISHFVE----HLDPE-----RLFELLSLCYSKMKYSSYIVIESPNPTSLY 147 (240)
T ss_dssp SEEEEESCGG----GSCGG-----GHHHHHHHHHHHBCTTCCEEEEEECTTSHH
T ss_pred eEEEECCchh----hCCcH-----HHHHHHHHHHHHcCCCcEEEEEeCCcchhH
Confidence 9999975422 21111 124577889999999999999877665543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=120.85 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCC------cCHHHHHHHHhCCCCCEEEEEeCCCCC--CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 41 RSSHAVLDLCAA------PGGWMQVAVQRVPVGSLVLGLDLVPIA--PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 41 ~~g~~VLDLGcG------PGg~sq~La~~~p~~~~ViGVDLsp~~--~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.++.+||||||| +|+++..++..+.+++.|+|||+++.. ..++|.++++|+.+++....+... . ++|
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~--d---~sF 289 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARR--Y---GPF 289 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHH--H---CCE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcc--c---CCc
Confidence 456899999999 777776666543337899999999843 346899999999997654333221 1 678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+|+|+++ ++..+ ...+|..+.++|+|||+|++.-
T Consensus 290 DlVisdgs-----H~~~d-------~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 290 DIVIDDGS-----HINAH-------VRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp EEEEECSC-----CCHHH-------HHHHHHHHGGGEEEEEEEEEEC
T ss_pred cEEEECCc-----ccchh-------HHHHHHHHHHhcCCCeEEEEEe
Confidence 99999864 22222 2467889999999999999953
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-10 Score=118.42 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|+|+..++...+. .|+|||+++. ..+.+ +.++++|+.+...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----------- 189 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----------- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----------
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-----------
Confidence 467999999999999999999988542 8999999972 13444 8899999987531
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC------CCHHHHHHHHHHcccceEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS------QDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs------~d~~~ll~~L~~~F~~V~~ 181 (832)
.+.||+|++|+++.. ...+..+.++|+|||+|++..+.+ .....+...+......+..
T Consensus 190 -~~~fD~Vi~~~p~~~---------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 190 -ENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -CSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred -cCCccEEEECCchhH---------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 267899999875321 123456889999999999866642 2345555556655434444
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=110.95 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++...| +..|+|||+++- ..+++|.++++|+..+. ..+..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~------~~~~~--- 106 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT------DVFEP--- 106 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH------HHCCT---
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH------hhcCc---
Confidence 4678999999999999999999876 679999999962 13568999999998732 12322
Q ss_pred CcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||.|+++.+. .|... +.........+|..+.++|+|||.|++.+
T Consensus 107 ~~~d~v~~~~~~----p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 107 GEVKRVYLNFSD----PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp TSCCEEEEESCC----CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCcCEEEEECCC----CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 568999886531 12211 10000012456788999999999999855
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-09 Score=107.86 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++.+|||||||+|.++..++...+ .|+|||+++. .+..++.++++|+.++..... +... .
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~----~~~~--~ 123 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQ----IHSE--I 123 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHH----HHHH--H
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccc----cccc--c
Confidence 357888999999999999999999854 7999999972 133479999999999654321 1110 2
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.||+|+++..... .... ....+|..+.++|+|||+|++..+...+
T Consensus 124 ~~d~v~~~~~~~~----~~~~-----~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 124 GDANIYMRTGFHH----IPVE-----KRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp CSCEEEEESSSTT----SCGG-----GHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred CccEEEEcchhhc----CCHH-----HHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 4799999865322 1110 1245778889999999998887776543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=110.25 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.++.+|||||||+|.++..++.. +..|+|||+++. . ...++.++++|+.... ..+.||
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~------------~~~~fD 104 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD------------AIDAYD 104 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC------------CCSCEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC------------CCCcEE
Confidence 3567899999999999999999886 469999999972 1 1126777888887642 127899
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--------------CCHHHHHHHHHHc--cc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--------------QDYSSVLYCLKQL--FE 177 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--------------~d~~~ll~~L~~~--F~ 177 (832)
+|++..... +... .....+|..+.++|+|||+|++.+... .+...+..+|... |.
T Consensus 105 ~v~~~~~l~----~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~ 175 (211)
T 3e23_A 105 AVWAHACLL----HVPR-----DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWA 175 (211)
T ss_dssp EEEECSCGG----GSCH-----HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCS
T ss_pred EEEecCchh----hcCH-----HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcE
Confidence 999976421 1110 123467888999999999999975532 2456677777754 77
Q ss_pred ceEEecCCCC-CCCCcceeEEEeeccC
Q 003302 178 KVEVDKPAAS-RSASAEIYLLGIKYKA 203 (832)
Q Consensus 178 ~V~~~KP~sS-R~~SaEiyvVc~gfk~ 203 (832)
.+.+...... -......++.+....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~wl~~~~~~~ 202 (211)
T 3e23_A 176 SVAVESSEGKGFDQELAQFLHVSVRKP 202 (211)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEEeccCCCCCCCCceEEEEEEecC
Confidence 7665432222 2233345555555444
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=108.43 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=78.2
Q ss_pred hhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-------CCCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 35 SKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-------APIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 35 ~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
..+..+.++.+|||||||+|.++..++.. +..|+|||+++. ...+++.++++|+.+..
T Consensus 39 ~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~------------ 103 (218)
T 3ou2_A 39 ERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWT------------ 103 (218)
T ss_dssp HHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCC------------
T ss_pred HHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCC------------
Confidence 33444667889999999999999999988 469999999972 13467999999998741
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
..+.||+|++.... .+..+ ..+..+|..+.++|+|||.|++..+...
T Consensus 104 ~~~~~D~v~~~~~l----~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 104 PDRQWDAVFFAHWL----AHVPD-----DRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp CSSCEEEEEEESCG----GGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred CCCceeEEEEechh----hcCCH-----HHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 12788999997532 12222 1235678889999999999999766543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=113.25 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|+|+++.. .+++ +.++++|+.+. +.
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~-- 159 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG---------IE-- 159 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC---------CC--
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc---------cC--
Confidence 4678999999999999999999986557899999999621 3455 89999998753 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc---ccceEEe
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL---FEKVEVD 182 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~---F~~V~~~ 182 (832)
.+.||+|+++.+. . ..++..+.++|+|||+|++..........+...+... |..+.++
T Consensus 160 -~~~~D~v~~~~~~----~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 160 -EENVDHVILDLPQ----P------------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp -CCSEEEEEECSSC----G------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred -CCCcCEEEECCCC----H------------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEE
Confidence 2568999998531 1 1245678899999999998654444445566666654 7777665
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=109.28 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++.. + .+.|+|||+++.. .+.++.++++|+....
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------- 122 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV------------- 122 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-------------
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-------------
Confidence 467899999999999999998875 3 4699999999721 3445899999997631
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
.+.||+|++++.. . .+..++..+.++|+|||+|++..+.......+...+... |..+.+.
T Consensus 123 ~~~fD~i~~~~~~--------~------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 123 DGKFDLIVANILA--------E------ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp CSCEEEEEEESCH--------H------HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred CCCceEEEECCcH--------H------HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 1678999998531 1 124567788999999999999766666667777777755 6655543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=121.71 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C-------------CCCceEEEccCCChhHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P-------------IRGAVSLEQDITKPECRARV 100 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~-------------i~~V~~i~gDIt~~~~~~~l 100 (832)
+.++.+|||||||+|.++..++...++++.|+|||+++.. . .+++.++++|+.++....
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~-- 158 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE-- 158 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB--
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc--
Confidence 4578899999999999999999987667899999999721 1 168999999998752100
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
......+.||+|+++.... |..+ ...+|..+.++|+|||+|++..
T Consensus 159 ---~~~~~~~~fD~V~~~~~l~----~~~d-------~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 159 ---PEGVPDSSVDIVISNCVCN----LSTN-------KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp ---SCCCCTTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cCCCCCCCEEEEEEccchh----cCCC-------HHHHHHHHHHHcCCCCEEEEEE
Confidence 0001126799999986432 2222 2367788999999999999854
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=107.98 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-----CCceEEEccCCChhHHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-----RGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-----~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
+.++.+|||||||+|.++..++.. +..|+|||+++.. .+ .++.++++|+....
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-------- 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC--------
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC--------
Confidence 568899999999999999999887 5699999999621 11 14688899998743
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+. .+.||+|++..... +..+. .....+|..+.++|+|||+|++..+.
T Consensus 97 ~~---~~~~D~v~~~~~l~----~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 97 FH---DSSFDFAVMQAFLT----SVPDP----KERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp SC---TTCEEEEEEESCGG----GCCCH----HHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CC---CCceeEEEEcchhh----cCCCH----HHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 11 26789999975321 11121 11246788899999999999987653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=119.43 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC---CceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR---GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~---~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++.+|||||||+|.++..++...| +..|+|||+++.. .+. ++.++++|+.+. +.
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~---------~~-- 289 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---------VE-- 289 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT---------CC--
T ss_pred CCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc---------CC--
Confidence 458999999999999999999875 6799999999731 122 477899999873 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
.+.||+|++|+++..+ .+..+. ....++..+.++|+|||+|++...+...|.. .+..+|..+.++
T Consensus 290 -~~~fD~Ii~nppfh~~-~~~~~~-----~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~---~l~~~fg~~~~~ 354 (375)
T 4dcm_A 290 -PFRFNAVLCNPPFHQQ-HALTDN-----VAWEMFHHARRCLKINGELYIVANRHLDYFH---KLKKIFGNCTTI 354 (375)
T ss_dssp -TTCEEEEEECCCC--------CC-----HHHHHHHHHHHHEEEEEEEEEEEETTSCHHH---HHHHHHSCCEEE
T ss_pred -CCCeeEEEECCCcccC-cccCHH-----HHHHHHHHHHHhCCCCcEEEEEEECCcCHHH---HHHHhcCCEEEE
Confidence 2678999999865432 122111 1235678899999999999997666666654 456667777765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=113.23 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CC--------------------CCCceEEEccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------AP--------------------IRGAVSLEQDIT 92 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~--------------------i~~V~~i~gDIt 92 (832)
.++.+|||+|||+|..+..|+.. +..|+|||+++. .. .++|.++++|++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 47889999999999999999986 569999999962 11 146899999999
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++.. . ..+.||+|++.++... .... ....++..+.++|+|||+|++
T Consensus 144 ~l~~--------~--~~~~FD~V~~~~~l~~----l~~~-----~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 144 DLPR--------A--NIGKFDRIWDRGALVA----INPG-----DHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp TGGG--------G--CCCCEEEEEESSSTTT----SCGG-----GHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCc--------c--cCCCEEEEEEhhhhhh----CCHH-----HHHHHHHHHHHHcCCCeEEEE
Confidence 8541 1 1167999999865322 1111 123567789999999999964
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-09 Score=107.46 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHh---CCCCCEEEEEeCCCC-CC-----CCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQR---VPVGSLVLGLDLVPI-AP-----IRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~---~p~~~~ViGVDLsp~-~~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
++.+|||||||+|+++..++.. +.+++.|+|||+++. .. .++|.++++|+.+.... ..+. ..+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l----~~~~---~~~f 153 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF----EHLR---EMAH 153 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG----GGGS---SSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHH----Hhhc---cCCC
Confidence 4679999999999999999987 455789999999983 22 25799999999874210 0111 1368
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh-hcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ-FLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~-~LkpGG~fV~KV 159 (832)
|+|+++++. . + ...+|..+.+ +|+|||+||+..
T Consensus 154 D~I~~d~~~------~-~-------~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 154 PLIFIDNAH------A-N-------TFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SEEEEESSC------S-S-------HHHHHHHHHHHTCCTTCEEEECS
T ss_pred CEEEECCch------H-h-------HHHHHHHHHHhhCCCCCEEEEEe
Confidence 999998741 0 1 1346677886 999999999854
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=111.73 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||||||+|.++..++..+++.+.|+|||+++. ...+++.++++|+.+.... ... ..
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~-~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY-------RAL-VP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-------TTT-CC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh-------hcc-cC
Confidence 467889999999999999999988765679999999972 1236899999999874311 111 15
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.||+|+++.+. .+. ...++..+.++|+|||+|++.
T Consensus 143 ~~D~v~~~~~~-------~~~------~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVAQ-------PTQ------AKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCCC-------HhH------HHHHHHHHHHhcCCCCEEEEE
Confidence 78999998641 111 123367889999999999986
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=115.09 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||||||+|.++..++. .++.|+|||+++. . ..+++.++++|+...+ + .+.||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~----~~~fD 119 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFR--------V----DKPLD 119 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC--------C----SSCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCC--------c----CCCcC
Confidence 35788999999999999999988 3579999999972 1 2468999999998743 1 16789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
+|++.... .|..+. ..+|..+.++|+|||+|++.++.......+...+.
T Consensus 120 ~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 168 (279)
T 3ccf_A 120 AVFSNAML----HWVKEP-------EAAIASIHQALKSGGRFVAEFGGKGNIKYILEALY 168 (279)
T ss_dssp EEEEESCG----GGCSCH-------HHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHH
T ss_pred EEEEcchh----hhCcCH-------HHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHH
Confidence 99997642 232221 35678899999999999997765544444444433
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-09 Score=105.92 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----C----CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----P----IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . . -.++.++++|+.+.. + . +
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~---~-~ 100 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN--------I---N-R 100 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC--------C---S-C
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC--------c---c-C
Confidence 36789999999999999999887 458999999972 1 0 116889999987642 1 1 6
Q ss_pred cccEEEeCC-CCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 111 AFDLVLHDG-SPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 111 ~FDlVlsDg-apnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.||+|++.. ... +..+ ......+|..+.++|+|||+|++.++
T Consensus 101 ~fD~v~~~~~~l~----~~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 101 KFDLITCCLDSTN----YIID----SDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CEEEEEECTTGGG----GCCS----HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CceEEEEcCcccc----ccCC----HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 789999974 321 1111 11235678889999999999998543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=106.09 Aligned_cols=100 Identities=23% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.. + ...|+|||+++. . .+.++.++++|+.+.. ..+ ..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~---~~ 111 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV------AAG---TT 111 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH------HHC---CS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH------hhc---cC
Confidence 46789999999999999977764 2 458999999972 1 3467999999987532 111 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh--hcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ--FLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~--~LkpGG~fV~KVFr 161 (832)
+.||+|++|++.. +.. .....++..+.+ +|+|||.|++....
T Consensus 112 ~~fD~i~~~~p~~----~~~------~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 112 SPVDLVLADPPYN----VDS------ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp SCCSEEEECCCTT----SCH------HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCccEEEECCCCC----cch------hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 6789999997532 111 123456667777 99999999996543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=106.42 Aligned_cols=115 Identities=18% Similarity=0.335 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++... ..|+|+|+++. ..+ +++.++++|+.+. +..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 97 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---------LCK- 97 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---------HTT-
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---------ccc-
Confidence 4678899999999999999998875 69999999962 123 5788889887541 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEec
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDK 183 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~K 183 (832)
.+.||+|++++... + ...++..+.++|+|||+|++..+.......+...+..+ | .+....
T Consensus 98 -~~~~D~v~~~~~~~--------~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~ 158 (192)
T 1l3i_A 98 -IPDIDIAVVGGSGG--------E------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-DVNITE 158 (192)
T ss_dssp -SCCEEEEEESCCTT--------C------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-CCEEEE
T ss_pred -CCCCCEEEECCchH--------H------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-ceEEEE
Confidence 14689999986421 0 13567788999999999999776655566667777765 6 555543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=108.85 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------C---------------CCCceEEEccCCChhH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------P---------------IRGAVSLEQDITKPEC 96 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~---------------i~~V~~i~gDIt~~~~ 96 (832)
+.++.+|||+|||+|..+..|+.. +..|+|||+++ |. . .+++.++++|++++..
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 96 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 96 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence 357889999999999999999987 46999999997 21 1 2579999999998652
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.. . ++||+|++.++.. +... .....++..+.++|+|||++++
T Consensus 97 ~~-------~---~~fD~v~~~~~l~----~l~~-----~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 97 RD-------I---GHCAAFYDRAAMI----ALPA-----DMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp HH-------H---HSEEEEEEESCGG----GSCH-----HHHHHHHHHHHHHSCSEEEEEE
T ss_pred cc-------C---CCEEEEEECcchh----hCCH-----HHHHHHHHHHHHHcCCCcEEEE
Confidence 10 0 4689999876421 1111 1234577889999999999444
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-10 Score=113.63 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++...| +..|+|||+++- ..+.+|.++++|+.+. +...+..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-----l~~~~~~--- 103 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-----LHKMIPD--- 103 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-----HHHHSCT---
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-----HHHHcCC---
Confidence 3678999999999999999999876 679999999962 1356899999998752 1112332
Q ss_pred CcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+++.++. |... +..........+..+.++|+|||+|++.+
T Consensus 104 ~~~d~v~~~~~~p----~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 104 NSLRMVQLFFPDP----WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp TCEEEEEEESCCC----CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChheEEEeCCCC----ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 6789999975321 2111 10000001246778899999999999844
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=108.62 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|+++.+++..+|.++.|+|||+++. ..+. ++.++++|+.+.. ..+....
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 130 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL------QQIENEK 130 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH------HHHHHTT
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH------HHHHhcC
Confidence 46789999999999999999999886789999999972 1333 4899999986421 1122111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++|+... . ....+..+.++|+|||+|++.
T Consensus 131 ~~~fD~v~~d~~~~--------~------~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 131 YEPFDFIFIDADKQ--------N------NPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp CCCCSEEEECSCGG--------G------HHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCcCEEEEcCCcH--------H------HHHHHHHHHHhcCCCcEEEEe
Confidence 14689999996411 1 124567788999999999874
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-09 Score=108.98 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
-+.++.+|||||||+|.++..++...+ +.|+|||+++.. .++ ++.++++|+.+.+ +.
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~- 111 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP--------FQ- 111 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS--------SC-
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC--------CC-
Confidence 356788999999999999999999875 399999999721 233 3899999997753 11
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|++.+.... . + ...+|..+.++|+|||+|++..
T Consensus 112 --~~~fD~v~~~~~l~~----~-~-------~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 112 --NEELDLIWSEGAIYN----I-G-------FERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp --TTCEEEEEEESCSCC----C-C-------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CCCEEEEEecChHhh----c-C-------HHHHHHHHHHHcCCCcEEEEEE
Confidence 267899999875322 1 2 1356788999999999999865
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-09 Score=111.87 Aligned_cols=105 Identities=16% Similarity=0.096 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++...+ +.|+|||+++.. .++ ++.++++|+.+. .
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~- 135 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------D- 135 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------C-
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------C-
Confidence 47889999999999999999998865 689999999721 233 688999998753 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhH--HhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMS--QNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~--q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+.||+|++..... +..+... .......+|..+.++|+|||+|++..+....
T Consensus 136 --~~fD~v~~~~~~~----~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 136 --EPVDRIVSLGAFE----HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp --CCCSEEEEESCGG----GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred --CCccEEEEcchHH----hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 7789999986432 1111000 0012346778899999999999997765544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=115.84 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|.|+..++...|.++.|+|||+++.. .. +++.++++|+.+.. + .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--------~----~ 87 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE--------L----N 87 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--------C----S
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC--------c----C
Confidence 4678899999999999999999988766899999999731 12 27999999998743 1 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+.||+|++..... +..+ ...+|..+.++|+|||+|++..+.
T Consensus 88 ~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHAFLL----HMTT-------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEESCGG----GCSS-------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECChhh----cCCC-------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 6789999986422 1111 135678899999999999985543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=108.90 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||||||+|.++..++...+ .+.|+|||+++. ...+++.++++|+..+... +. .. +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~------~~-~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY------AN-IV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG------TT-TS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccc------cc-cC-c
Confidence 46789999999999999999999987 679999999972 1236899999999874210 01 11 5
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+++.+. .. ....++..+.++|+|||+|++.+
T Consensus 143 ~~D~v~~~~~~-------~~------~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 143 KVDVIYEDVAQ-------PN------QAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CEEEEEECCCS-------TT------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEecCC-------hh------HHHHHHHHHHHhCCCCcEEEEEE
Confidence 78999987421 11 12345778899999999999863
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-09 Score=108.44 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++... ++.|+|||+++- . .+ +++.++++|+.+.. +
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--- 100 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--------A--- 100 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--------C---
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC--------c---
Confidence 5788999999999999999999886 458999999972 1 23 47999999998743 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|++.++.. +..+ ...+|..+.++|+|||+|++..
T Consensus 101 -~~~fD~V~~~~~~~----~~~~-------~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 101 -NEKCDVAACVGATW----IAGG-------FAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp -SSCEEEEEEESCGG----GTSS-------SHHHHHHHTTSEEEEEEEEEEE
T ss_pred -CCCCCEEEECCChH----hcCC-------HHHHHHHHHHHcCCCeEEEEec
Confidence 16789999965421 1111 2456788999999999999854
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.9e-09 Score=105.28 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||||||+|.++..++.. ..|+|||+++. . .-.++.++++|+.+.. + .
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~----~ 94 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE--------L----P 94 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC--------C----S
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC--------C----C
Confidence 456789999999999999888765 58999999972 1 1246889999987642 1 1
Q ss_pred CcccEEEeCC-CCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 110 RAFDLVLHDG-SPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 110 ~~FDlVlsDg-apnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||+|++.+ ..+ |..+ ......+|..+.++|+|||+|++.++
T Consensus 95 ~~fD~v~~~~~~~~----~~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 95 EPVDAITILCDSLN----YLQT----EADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp SCEEEEEECTTGGG----GCCS----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchh----hcCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 6789999864 211 1111 12235678889999999999998553
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.4e-10 Score=115.02 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=77.9
Q ss_pred hhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHH
Q 003302 32 QLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARV 100 (832)
Q Consensus 32 qi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l 100 (832)
++......+.++.+|||||||+|.++..++...| ++.|+|||+++. ..++++.++++|+....
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----- 100 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP----- 100 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-----
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-----
Confidence 3333344567899999999999999999999865 579999999972 13467999999998643
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+. .+.||+|++..... +..+. ..+|..+.++|+|||+|++..
T Consensus 101 ---~~---~~~fD~v~~~~~l~----~~~~~-------~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 101 ---FE---DSSFDHIFVCFVLE----HLQSP-------EEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ---SC---TTCEEEEEEESCGG----GCSCH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CC---CCCeeEEEEechhh----hcCCH-------HHHHHHHHHHcCCCcEEEEEE
Confidence 11 26789999976421 22221 256778899999999999854
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=113.91 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||||||+|.++..++..++..+.|+|||+++.. ..+++.++++|+.+..... ....
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG-----ADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC-----TTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc-----cccc
Confidence 578999999999999999999877457899999999721 1468999999998854210 0000
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+.||+|++.... +|. + ...+|..+.++|+|||+|++.
T Consensus 110 ~~~~fD~V~~~~~l----~~~-~-------~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 110 DKQKIDMITAVECA----HWF-D-------FEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TSSCEEEEEEESCG----GGS-C-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCeeEEeHhhHH----HHh-C-------HHHHHHHHHHhcCCCcEEEEE
Confidence 01578999998642 222 2 235678899999999999883
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-09 Score=113.46 Aligned_cols=134 Identities=10% Similarity=0.108 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCC-ceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRG-AVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||||||+|.++..++.. | ++.|+|||+++- ..+.+ +.++++|+.+.. .
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---------~---- 187 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---------K---- 187 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---------G----
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---------c----
Confidence 5679999999999999999998 4 679999999962 13443 899999998631 1
Q ss_pred Ccc---cEEEeCCCCCCCCC-------chhHHh-HHhHHHHHHHHHHH-hhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 110 RAF---DLVLHDGSPNVGGA-------WAQEAM-SQNALVIDSVKLAT-QFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 110 ~~F---DlVlsDgapnv~g~-------w~~D~~-~q~~L~~~aLk~A~-~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
+.| |+|++|++....+. |.+... ....--+..++.+. +.|+|||+|++.+ .......+.. +|.
T Consensus 188 ~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~-~~~q~~~v~~----~~~ 262 (284)
T 1nv8_A 188 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GEDQVEELKK----IVS 262 (284)
T ss_dssp GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTTCHHHHTT----TST
T ss_pred cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE-CchHHHHHHH----HHH
Confidence 356 99999975321111 111100 00000124567778 9999999999854 3333333333 343
Q ss_pred ceEEecCCCCCCCCcceeEEEe
Q 003302 178 KVEVDKPAASRSASAEIYLLGI 199 (832)
Q Consensus 178 ~V~~~KP~sSR~~SaEiyvVc~ 199 (832)
...+.++.+.+ +++|++.
T Consensus 263 ~~~~~~D~~g~----~R~~~~~ 280 (284)
T 1nv8_A 263 DTVFLKDSAGK----YRFLLLN 280 (284)
T ss_dssp TCEEEECTTSS----EEEEEEE
T ss_pred hCCeecccCCC----ceEEEEE
Confidence 33667777766 3666654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=112.71 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++... +.|+|||+++ +. .++++.++++|+...+ +. .
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~--------~~---~ 101 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--------FT---D 101 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--------SC---T
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC--------CC---C
Confidence 578899999999999999998874 3999999997 21 2467999999998753 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+.||+|++.... .|..+. ..+|..+.++|+|||+|++..+.
T Consensus 102 ~~fD~V~~~~~l----~~~~d~-------~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 102 ERFHIVTCRIAA----HHFPNP-------ASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp TCEEEEEEESCG----GGCSCH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEEEhhhh----HhcCCH-------HHHHHHHHHHcCCCCEEEEEEcC
Confidence 678999998542 233332 35678899999999999986543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=104.72 Aligned_cols=98 Identities=15% Similarity=0.267 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||||||+|.++..++.. +..|+|||+++. ...+++.++++|+.+.+ +. .+.
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~---~~~ 116 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP--------FE---NEQ 116 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS--------SC---TTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC--------CC---CCC
Confidence 468899999999999999999987 569999999972 12467999999998753 11 267
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
||+|++..... +..+ ...+|..+.++|+|||.|++.++..
T Consensus 117 fD~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 117 FEAIMAINSLE----WTEE-------PLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp EEEEEEESCTT----SSSC-------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ccEEEEcChHh----hccC-------HHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 89999976432 2222 1356788999999999999977544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-09 Score=104.74 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++ +|||||||+|.++..++.. ++..|+|||+++.. . .+++.++++|+.+.+ +.
T Consensus 43 ~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~--- 108 (219)
T 3dlc_A 43 TAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--------IE--- 108 (219)
T ss_dssp CEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--------SC---
T ss_pred CCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--------CC---
Confidence 445 9999999999999999988 35799999999621 2 246899999998743 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|++..... +..+ ...+|..+.++|+|||.|++..
T Consensus 109 ~~~~D~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 109 DNYADLIVSRGSVF----FWED-------VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp TTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccEEEECchHh----hccC-------HHHHHHHHHHhCCCCCEEEEEe
Confidence 26789999986422 1111 2357788999999999999853
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=112.33 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.++.+|||||||+|.++..++.. ..+.|+|||+++.. .+ +++.++++|+.+.+ +.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 111 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--------FR- 111 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CC-
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--------CC-
Confidence 3568899999999999999999987 35699999999731 23 45999999998743 11
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++.+.... . + ...+|..+.++|+|||+|++..+
T Consensus 112 --~~~fD~i~~~~~~~~----~-~-------~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 112 --NEELDLIWSEGAIYN----I-G-------FERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp --TTCEEEEEESSCGGG----T-C-------HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred --CCCEEEEEEcCCcee----c-C-------HHHHHHHHHHHcCCCCEEEEEEe
Confidence 267899999875321 1 1 13567889999999999998653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=110.78 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCC-CceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIR-GAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.++.+|||||||+|.++..++... ..|+|||+++.. ..+ ++.++++|+.+.. ..+.||
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~------------~~~~fD 105 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ------------LPRRYD 105 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC------------CSSCEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC------------cCCccc
Confidence 366789999999999999998763 379999999731 122 8999999987631 126789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHH-hhcccCcEEEEEEcCCCCHH
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLAT-QFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~-~~LkpGG~fV~KVFrs~d~~ 166 (832)
+|++..... +..+ ...+|+.+. ++|+|||+|++.++......
T Consensus 106 ~v~~~~~l~----~~~~-------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~ 148 (250)
T 2p7i_A 106 NIVLTHVLE----HIDD-------PVALLKRINDDWLAEGGRLFLVCPNANAVS 148 (250)
T ss_dssp EEEEESCGG----GCSS-------HHHHHHHHHHTTEEEEEEEEEEEECTTCHH
T ss_pred EEEEhhHHH----hhcC-------HHHHHHHHHHHhcCCCCEEEEEcCChHHHH
Confidence 999976421 2222 135778899 99999999999776655443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=103.54 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++. ....|+|+|+++.. .++++.++++|+.+. +..
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---------~~~-- 98 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---------LDK-- 98 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---------GGG--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---------ccC--
Confidence 35778999999999999999987 36799999999721 236788999998651 222
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~s 186 (832)
+.||+|++++. .. ...++..+.++ |||.|++..+.......+...|..+...+..+.+..
T Consensus 99 -~~~D~i~~~~~------~~---------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 158 (183)
T 2yxd_A 99 -LEFNKAFIGGT------KN---------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVNVFI 158 (183)
T ss_dssp -CCCSEEEECSC------SC---------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -CCCcEEEECCc------cc---------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEEeee
Confidence 56899999864 01 12345555666 999999977666666677777777654555554433
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=111.70 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=82.7
Q ss_pred hhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhH
Q 003302 23 RSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 23 rsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~ 96 (832)
+.+.+..|+.. +. +.++.+|||||||+|.++..++...| ++.|+|||+++.. ..+++.++++|+.+..
T Consensus 18 ~~~~~~~l~~~---~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~- 91 (259)
T 2p35_A 18 RTRPARDLLAQ---VP-LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK- 91 (259)
T ss_dssp GGHHHHHHHTT---CC-CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-
T ss_pred HHHHHHHHHHh---cC-CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-
Confidence 44555555542 22 35678999999999999999998875 5689999999721 2568999999998742
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
..+.||+|++.... .|..+ ...+|..+.++|+|||+|++.++...
T Consensus 92 -----------~~~~fD~v~~~~~l----~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 136 (259)
T 2p35_A 92 -----------PAQKADLLYANAVF----QWVPD-------HLAVLSQLMDQLESGGVLAVQMPDNL 136 (259)
T ss_dssp -----------CSSCEEEEEEESCG----GGSTT-------HHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred -----------ccCCcCEEEEeCch----hhCCC-------HHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence 12678999997542 23322 23567889999999999999776543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=110.07 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--C-------C------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--I-------A------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~-------~------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||||||+|.++..++...+ ++.|+|||+++ | . .++++.++++|+.+++.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--------- 92 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--------- 92 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG---------
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh---------
Confidence 5788999999999999999987654 67999999994 4 1 24678999999987531
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.....||+|.++.+ |.............+|..+.++|+|||.|++
T Consensus 93 -~~~d~v~~i~~~~~------~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 93 -ELKNIADSISILFP------WGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp -GGTTCEEEEEEESC------CHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred -hccCeEEEEEEeCC------CcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 11244577766542 2221110000113567889999999999998
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=106.16 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . .. .++.++++|+..... . +.||
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~-----------~-~~fD 108 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV-----------P-TSID 108 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCC-----------C-SCCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCC-----------C-CCeE
Confidence 47889999999999999999886 569999999972 1 12 379999999987531 1 6789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+|++..... +..+.. ...+|..+.++|+|||.|++..+.
T Consensus 109 ~v~~~~~l~----~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 109 TIVSTYAFH----HLTDDE-----KNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp EEEEESCGG----GSCHHH-----HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEECcchh----cCChHH-----HHHHHHHHHHhcCCCCEEEEEecc
Confidence 999986421 222211 134678899999999999997643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-09 Score=111.65 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++.+|||||||+|.|+..++. .++.|+|||+++. ...+++.++++|+.+.+ +. .+.||+
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~--------~~---~~~fD~ 97 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA--------LP---DKSVDG 97 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCC--------SC---TTCBSE
T ss_pred CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCC--------CC---CCCEeE
Confidence 36788999999999999999987 3679999999972 12348999999998743 11 267899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
|++..... +..+ ...+|..+.++|+ ||++++..+.
T Consensus 98 v~~~~~l~----~~~~-------~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 98 VISILAIH----HFSH-------LEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEEESCGG----GCSS-------HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEEcchHh----hccC-------HHHHHHHHHHHhC-CcEEEEEEcC
Confidence 99986421 1112 2457788999999 9988886654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=110.53 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||||+++..++...+ ++.|+|||+++- . .+.+|.++++|+.+.+ .
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d-- 186 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------G-- 186 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------G--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------C--
Confidence 57899999999999998865554544 679999999972 1 3467999999997632 2
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|++.+.. .+ ...++..+.++|+|||+|++..
T Consensus 187 -~~FDvV~~~a~~-------~d-------~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 187 -LEFDVLMVAALA-------EP-------KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -CCCSEEEECTTC-------SC-------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred -CCcCEEEECCCc-------cC-------HHHHHHHHHHHcCCCcEEEEEc
Confidence 678999986531 11 1356778999999999999854
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-09 Score=107.08 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=92.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C---CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P---IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|||||||+|.++..++. .+..|+|||+++.. . ..++.++++|+++.. ...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------~~~ 131 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR------------PTE 131 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC------------CSS
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC------------CCC
Confidence 35999999999999998875 36789999999721 1 134899999998743 125
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC----------CCHHHHHHHHHHc-ccce
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS----------QDYSSVLYCLKQL-FEKV 179 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs----------~d~~~ll~~L~~~-F~~V 179 (832)
.||+|++...... ... .....+|..+.++|+|||+|++..|.. .+...+..+|... |..+
T Consensus 132 ~fD~v~~~~~l~~----~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 132 LFDLIFDYVFFCA----IEP-----EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp CEEEEEEESSTTT----SCG-----GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEE
T ss_pred CeeEEEEChhhhc----CCH-----HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEE
Confidence 7899999764321 111 012456788999999999999876643 1345666777665 7766
Q ss_pred EEec---CCCCCCCCcceeEEEeeccC
Q 003302 180 EVDK---PAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 180 ~~~K---P~sSR~~SaEiyvVc~gfk~ 203 (832)
.+.. +...| ...|.+..++++.-
T Consensus 203 ~~~~~~~~~~~~-~g~e~~~~~~~~~~ 228 (235)
T 3lcc_A 203 SVEENPHAIPTR-KGKEKLGRWKKINL 228 (235)
T ss_dssp EEEECTTCCTTT-TTSCEEEEEEESCC
T ss_pred EEEecCCccccc-cCHHHHhhhhhccc
Confidence 5532 22233 34678877777643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-09 Score=109.15 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++..++.++.|+|||+++- . .+ .+|.++++|+.... ........
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l-----~~~~~~~~ 133 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL-----HSLLNEGG 133 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH-----HHHHHHHC
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH-----HHHhhccC
Confidence 35689999999999999999999877889999999983 2 22 36899999976521 11111101
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++|+.. .. ....+..+.++|+|||+||+.
T Consensus 134 ~~~fD~V~~d~~~--------~~------~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 134 EHQFDFIFIDADK--------TN------YLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp SSCEEEEEEESCG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEeEEEEcCCh--------HH------hHHHHHHHHHhcCCCeEEEEE
Confidence 2678999999641 11 123567788999999999984
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-09 Score=103.70 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.++.+|||||||+|.++..++ ..|+|||+++. ++.++++|+.+.+ +. .+.||+|++...
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----~~~~~~~d~~~~~--------~~---~~~fD~v~~~~~ 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR------NPVHCFDLASL----DPRVTVCDMAQVP--------LE---DESVDVAVFCLS 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----STTEEESCTTSCS--------CC---TTCEEEEEEESC
T ss_pred CCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----CceEEEeccccCC--------CC---CCCEeEEEEehh
Confidence 567899999999999987662 58999999987 6788999988743 11 267899999764
Q ss_pred CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--CCHHHHHHHHHHc-ccceEE
Q 003302 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--QDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 121 pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--~d~~~ll~~L~~~-F~~V~~ 181 (832)
.. | .+ ...+|..+.++|+|||+|++..+.. .+...+...|... |..+..
T Consensus 125 l~----~-~~-------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 125 LM----G-TN-------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp CC----S-SC-------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred cc----c-cC-------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 32 2 11 2356778899999999999966543 3456677777765 765554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-09 Score=111.60 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++....+++.|+|||+++.. .+. ++.++++|+.+.. +
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--- 184 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--------T--- 184 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--------C---
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--------c---
Confidence 5788999999999999999886333447799999999721 122 3889999998743 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. +.||+|++++.. .+..+. .....++..+.++|+|||+|++..+
T Consensus 185 ~-~~fD~v~~~~~~----~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 185 R-EGYDLLTSNGLN----IYEPDD----ARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp C-SCEEEEECCSSG----GGCCCH----HHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred c-CCeEEEEECChh----hhcCCH----HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 1 678999997632 122222 1123567889999999999998663
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-09 Score=116.84 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------------CC--CCceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------------PI--RGAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------------~i--~~V~~i~gDIt~~~~~~~ 99 (832)
+.++.+|||||||+|.++..++...+ ...|+|||+++. . .+ .+|.++++|+.+++...
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d- 248 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE- 248 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc-
Confidence 47899999999999999999988765 447999999961 0 12 56999999999875321
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+ ..||+|+++... +..+ ...+|..+++.|+|||.||+
T Consensus 249 ---~~-----~~aDVVf~Nn~~-----F~pd-------l~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 249 ---RI-----ANTSVIFVNNFA-----FGPE-------VDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp ---HH-----HTCSEEEECCTT-----CCHH-------HHHHHHHHHTTSCTTCEEEE
T ss_pred ---cc-----CCccEEEEcccc-----cCch-------HHHHHHHHHHcCCCCcEEEE
Confidence 11 346999998532 2222 23456778899999999998
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=110.63 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=87.7
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C---CCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P---IRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+|||||||+|+++..+++..| +..|++||+++.. + .+++.++++|+... +.....+.|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~---------l~~~~~~~f 160 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV---------AESFTPASR 160 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH---------HHTCCTTCE
T ss_pred CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH---------HhhccCCCC
Confidence 3899999999999999999776 5699999999721 1 35789999997642 111112679
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC---HHHHHHHHHHcccceEEec
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD---YSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d---~~~ll~~L~~~F~~V~~~K 183 (832)
|+|++|.....+. ..++. ....+..+.++|+|||+|++.+..... +..++..|...|..|.++.
T Consensus 161 DvIi~D~~~~~~~---~~~L~----t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~ 227 (317)
T 3gjy_A 161 DVIIRDVFAGAIT---PQNFT----TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIA 227 (317)
T ss_dssp EEEEECCSTTSCC---CGGGS----BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEECCCCcccc---chhhh----HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEE
Confidence 9999996422111 11111 135677889999999999997764443 3456778888999988874
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=109.88 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++...| ++.|+|||+++-. .+.+|.++++|+.+... .....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~--------~~~~~ 149 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR--------EAGHR 149 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT--------STTTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc--------ccccC
Confidence 4688999999999999999998876 6799999999721 35679999999865320 00011
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|+|....+ ...++..+.++|+|||+|++
T Consensus 150 ~~fD~I~s~a~~~---------------~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 150 EAYARAVARAVAP---------------LCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TCEEEEEEESSCC---------------HHHHHHHHGGGEEEEEEEEE
T ss_pred CCceEEEECCcCC---------------HHHHHHHHHHHcCCCeEEEE
Confidence 6789999975210 12456778999999999987
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-08 Score=110.32 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C-CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
.++.+|||+|||+|+++..++++++....|+|||+++.. . ..++.++++|+.+.. ..+.||+|++|
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~------------~~~~fD~Ii~N 105 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE------------PGEAFDLILGN 105 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC------------CSSCEEEEEEC
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcC------------ccCCCCEEEEC
Confidence 346799999999999999999886446799999999843 2 257889999987632 12678999999
Q ss_pred CCCCCCCC---c---hhHHhHH------------hHHHHHHHHHHHhhcccCcEEEEEEcCC----CCHHHHHHHHHH
Q 003302 119 GSPNVGGA---W---AQEAMSQ------------NALVIDSVKLATQFLAPKGTFVTKVFRS----QDYSSVLYCLKQ 174 (832)
Q Consensus 119 gapnv~g~---w---~~D~~~q------------~~L~~~aLk~A~~~LkpGG~fV~KVFrs----~d~~~ll~~L~~ 174 (832)
++....+. + ..+.... ..+....+..+.++|+|||.+++.+..+ .....+...+..
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~ 183 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAR 183 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHH
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 86443221 0 1111110 0133466888999999999999855432 234555544443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=105.08 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++...+ ..|+|||+++. ...+++.++++|+.+.. +. .+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~--------~~---~~ 106 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD--------FP---SA 106 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC--------SC---SS
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC--------CC---CC
Confidence 47788999999999999999988733 28999999962 12367999999998742 11 26
Q ss_pred cccEEEeCCCCC-----CCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 111 AFDLVLHDGSPN-----VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 111 ~FDlVlsDgapn-----v~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
.||+|++++... .+..|.... ........+|..+.++|+|||+|++..+...
T Consensus 107 ~fD~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 107 SFDVVLEKGTLDALLAGERDPWTVSS-EGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp CEEEEEEESHHHHHTTTCSCTTSCCH-HHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred cccEEEECcchhhhcccccccccccc-chhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 789999976321 111232211 1122346788899999999999999776654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.7e-09 Score=107.16 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------C---CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------P---IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++... ...|+|||+++. . . ..++.++++|+.+.. + ..
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--------~---~~ 144 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--------P---EP 144 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--------C---CS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC--------C---CC
Confidence 368899999999999999888764 458999999972 1 1 224788899987642 1 11
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC--------------CHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ--------------DYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~--------------d~~~ll~~L~~~ 175 (832)
+.||+|+++.... +..+ ..+..+|..+.++|+|||+|++..+... +...+..+|...
T Consensus 145 ~~fD~v~~~~~l~----~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 215 (241)
T 2ex4_A 145 DSYDVIWIQWVIG----HLTD-----QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSA 215 (241)
T ss_dssp SCEEEEEEESCGG----GSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHT
T ss_pred CCEEEEEEcchhh----hCCH-----HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHc
Confidence 5799999985421 1111 1124678889999999999998654211 345666677665
Q ss_pred -ccceEEe
Q 003302 176 -FEKVEVD 182 (832)
Q Consensus 176 -F~~V~~~ 182 (832)
|..+.+.
T Consensus 216 Gf~~~~~~ 223 (241)
T 2ex4_A 216 GLSLLAEE 223 (241)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEee
Confidence 7666654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=116.05 Aligned_cols=118 Identities=24% Similarity=0.275 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||||||+|.++..++.. +..|+|||+++.. .-..+.++++|+.+... . .+.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~--------~---~~~ 298 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT--------E---EAR 298 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC--------T---TCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc--------c---CCC
Confidence 6789999999999999999987 4699999999731 11248899999987421 1 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
||+|++|++...++.... .....++..+.++|+|||+|++.+.+...|.. .+...|..+..+
T Consensus 299 fD~Ii~npp~~~~~~~~~------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~---~l~~~f~~v~~l 360 (381)
T 3dmg_A 299 FDIIVTNPPFHVGGAVIL------DVAQAFVNVAAARLRPGGVFFLVSNPFLKYEP---LLEEKFGAFQTL 360 (381)
T ss_dssp EEEEEECCCCCTTCSSCC------HHHHHHHHHHHHHEEEEEEEEEEECTTSCHHH---HHHHHHSCCEEE
T ss_pred eEEEEECCchhhcccccH------HHHHHHHHHHHHhcCcCcEEEEEEcCCCChHH---HHHHhhccEEEE
Confidence 899999987654332211 22346778899999999999997666656553 455667777765
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-09 Score=109.38 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++... ..|+|||+++. . .++++.++++|+.+.+ +.
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~--- 84 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--------FP--- 84 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--------SC---
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC--------CC---
Confidence 4678999999999999999998874 48999999972 1 2467999999997643 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++..... |..+ ...+|..+.++|+|||+|++..+..
T Consensus 85 ~~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 85 DDSFDIITCRYAAH----HFSD-------VRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp TTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCcEEEEEECCchh----hccC-------HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 26789999985421 2222 2356788999999999999865543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=111.56 Aligned_cols=107 Identities=19% Similarity=0.077 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++..|||+|||+|.++..++...++...|+|+|+++. ..+.++.++++|+++... .
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~-----------~ 269 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR-----------F 269 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG-----------T
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc-----------c
Confidence 457889999999999999999987634679999999972 133478999999987531 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|++|++.. ....+......+...++..+.++|+|||++++.+.
T Consensus 270 ~~~~D~Ii~npPyg---~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 270 FPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCCSEEEECCCSC---C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cCCCCEEEECCCCc---CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 25579999998632 22222122234556788889999999999998543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-09 Score=109.08 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . .+ +++.++++|+.+... + .
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~---~ 133 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-------H---L 133 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-------G---C
T ss_pred CCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-------h---c
Confidence 34679999999999999999887 569999999972 1 22 578899999987531 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+.||+|++..... |..+. ..+|..+.++|+|||+|++.++.
T Consensus 134 ~~~fD~v~~~~~l~----~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 134 ETPVDLILFHAVLE----WVADP-------RSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp SSCEEEEEEESCGG----GCSCH-------HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCCceEEEECchhh----cccCH-------HHHHHHHHHHcCCCeEEEEEEeC
Confidence 27899999986422 22221 35778899999999999996654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-08 Score=102.07 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||||||+|.++..++... ...|+|||+++.. ..+++.++++|+.... + ..+.
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--------~---~~~~ 158 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT--------L---PPNT 158 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC--------C---CSSC
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC--------C---CCCC
Confidence 467899999999999999888774 4589999999721 1256889999987642 1 1267
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---------------CCHHHHHHHHHHc-
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---------------QDYSSVLYCLKQL- 175 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---------------~d~~~ll~~L~~~- 175 (832)
||+|++..... +..+ .-...+|..+.++|+|||+|++..+.. .+...+..+|...
T Consensus 159 fD~v~~~~~l~----~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 229 (254)
T 1xtp_A 159 YDLIVIQWTAI----YLTD-----ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESG 229 (254)
T ss_dssp EEEEEEESCGG----GSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHT
T ss_pred eEEEEEcchhh----hCCH-----HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCC
Confidence 89999975321 1111 113567888999999999999976311 1235566666654
Q ss_pred ccceEEe
Q 003302 176 FEKVEVD 182 (832)
Q Consensus 176 F~~V~~~ 182 (832)
|..+.+.
T Consensus 230 f~~~~~~ 236 (254)
T 1xtp_A 230 VRVVKEA 236 (254)
T ss_dssp CCEEEEE
T ss_pred CEEEEee
Confidence 7766654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=105.73 Aligned_cols=113 Identities=23% Similarity=0.251 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++... ..|+|||+++.. .+. +.++++|+... +..
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~---------~~~-- 182 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA---------LPF-- 182 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH---------GGG--
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc---------CcC--
Confidence 4678999999999999999888752 399999999832 223 78888887541 222
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
+.||+|+++... + .+..++..+.++|+|||+|++..+.......+...+... |..+.+.
T Consensus 183 -~~fD~Vv~n~~~--------~------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 183 -GPFDLLVANLYA--------E------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp -CCEEEEEEECCH--------H------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred -CCCCEEEECCcH--------H------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEe
Confidence 678999997531 1 124567788999999999999766655667777777766 7665553
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.82 E-value=8.4e-09 Score=106.14 Aligned_cols=96 Identities=25% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . .-.++.++++|+.+... .+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------------~~ 104 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------------KN 104 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------------CS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc------------CC
Confidence 56789999999999999999886 469999999972 1 11368899999986421 15
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|++..+.. ..+. ......+|..+.++|+|||.|++.+
T Consensus 105 ~fD~v~~~~~~~--~~~~------~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 105 EFDAVTMFFSTI--MYFD------EEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CEEEEEECSSGG--GGSC------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccEEEEcCCch--hcCC------HHHHHHHHHHHHHHcCCCeEEEEec
Confidence 789999864211 0111 1123567888999999999999855
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=107.62 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CC--------------------------------
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------AP-------------------------------- 80 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~-------------------------------- 80 (832)
++.+|||||||+|.++..++..++ ...|+|||+++. ..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 578999999999999999999986 469999999852 00
Q ss_pred ---------------------------C-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHh
Q 003302 81 ---------------------------I-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM 132 (832)
Q Consensus 81 ---------------------------i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~ 132 (832)
+ .+|.++++|+...... +.....+.||+|+|... ..|.+-..
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~------~~~~~~~~fD~I~~~~v----l~~ihl~~ 194 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD------LVEAQTPEYDVVLCLSL----TKWVHLNW 194 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHH------HHTTCCCCEEEEEEESC----HHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccc------cccccCCCcCEEEEChH----HHHhhhcC
Confidence 1 3799999999864311 11112278999999753 12322000
Q ss_pred HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 133 SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 133 ~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
....+..+|+.+.++|+|||.||+.
T Consensus 195 -~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 195 -GDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp -HHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1123467889999999999999984
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-09 Score=106.77 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------------CCCCCceEEEccCCChhHHHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------------APIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------------~~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+.++.+|||||||+|.++..++...| ++.|+|||+++- ..++++.++++|+.+++.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~-------- 95 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP-------- 95 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS--------
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC--------
Confidence 35788999999999999999999875 679999999983 124579999999987531
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .+. |.|+...+ |.........-...+|..+.++|+|||+|++.+
T Consensus 96 ~---~~~-d~v~~~~~------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 96 L---SGV-GELHVLMP------WGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp C---CCE-EEEEEESC------CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred C---CCC-CEEEEEcc------chhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 133 66664322 222210001011467888999999999999844
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=101.96 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-----CceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-----GAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-----~V~~i~gDIt~~~~~~~l~~~L 104 (832)
.++.+|||||||+|.++..++...+ ...|+|||+++.. .++ ++.++++|+.....
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 98 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK-------- 98 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------
Confidence 3678999999999999999998754 4699999999621 122 79999999875431
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. .+.||+|++..... +..+ .....+|..+.++|+|||.|++..+
T Consensus 99 ~---~~~fD~v~~~~~l~----~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 99 R---FHGYDAATVIEVIE----HLDL-----SRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp G---GCSCSEEEEESCGG----GCCH-----HHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred c---CCCcCEEeeHHHHH----cCCH-----HHHHHHHHHHHHHcCCCEEEEEccC
Confidence 1 16789999975421 1111 1234677889999999998877543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-09 Score=109.79 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----------------CCCCCceEEEccCCChhHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----------------APIRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----------------~~i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
+.++.+|||||||+|.++..++...| ...|+|||+++ + ..+.+|.++++|+... +..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-----l~~ 117 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-----LPN 117 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-----HHH
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-----hhh
Confidence 45677899999999999999998876 67999999986 1 1356899999999862 111
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.. +.||+|++..+. .|... +.........+|..+.++|+|||.|++.+
T Consensus 118 ~~~~---~~~D~v~~~~~d----p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 118 FFYK---GQLTKMFFLFPD----PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp HCCT---TCEEEEEEESCC---------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCC---cCeeEEEEeCCC----chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 2322 678999876431 12111 00000001356778899999999999854
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-09 Score=108.80 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=69.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC--CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR--GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|||||||+|.++..++..+++++.|+|||+++-. .+. +|.++++|+.+. +.....
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~---------l~~~~~ 127 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV---------MSRLAN 127 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH---------GGGSCT
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH---------HHHhcC
Confidence 4599999999999999999998878999999999721 233 688999987642 111112
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|++|+... . ....+..+.++|+|||+|++
T Consensus 128 ~~fD~V~~d~~~~--------~------~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 128 DSYQLVFGQVSPM--------D------LKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp TCEEEEEECCCTT--------T------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCcCeEEEcCcHH--------H------HHHHHHHHHHHcCCCcEEEE
Confidence 6799999996421 0 12356678899999999997
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-09 Score=105.26 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||||||+|.++..++...+ .|+|||+++. . ..+++.++++|+.+.. + .+.||+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~----~~~~D~ 103 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFR--------L----GRKFSA 103 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC--------C----SSCEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc--------c----CCCCcE
Confidence 6788999999999999999998743 8999999972 1 2467999999998743 1 167899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+|.... ..|..+ ......+|..+.++|+|||+|++..+
T Consensus 104 v~~~~~~---~~~~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 104 VVSMFSS---VGYLKT----TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp EEECTTG---GGGCCS----HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCch---HhhcCC----HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9964310 011111 11235678889999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-09 Score=111.68 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC--------CC-----------------------------
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP--------IR----------------------------- 82 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~--------i~----------------------------- 82 (832)
.+|.+|||||||||.++..++... ...|+|+|+++- .. .+
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 467899999999998877665441 237999999961 10 00
Q ss_pred --Cce-EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHh-HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 83 --GAV-SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM-SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 83 --~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
++. ++++|++.... +.....++||+|++.... .+. ....-...+|..+.++|+|||+|++.
T Consensus 132 ~~~i~~~~~~D~~~~~~-------~~~~~~~~fD~V~~~~~l--------~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNP-------LAPAVLPLADCVLTLLAM--------ECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSST-------TTTCCCCCEEEEEEESCH--------HHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCC-------CCccccCCCCEeeehHHH--------HHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 122 77888887311 110112679999997531 111 00112346788999999999999997
Q ss_pred EcCC---------------CCHHHHHHHHHHc-ccceEEecC
Q 003302 159 VFRS---------------QDYSSVLYCLKQL-FEKVEVDKP 184 (832)
Q Consensus 159 VFrs---------------~d~~~ll~~L~~~-F~~V~~~KP 184 (832)
.... .+...+...|... |..+.+..+
T Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 197 VTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp EESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 5321 1345677777765 776666543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-09 Score=105.72 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++..+|.++.|+|||+++- ..+. ++.++++|+.... ........
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~~~ 137 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL-----AELIHAGQ 137 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-----HHHHTTTC
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH-----HHhhhccC
Confidence 36789999999999999999999886789999999962 1233 4899999976421 11111101
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++|+.. .. ....+..+.++|+|||+|++.
T Consensus 138 ~~~fD~v~~~~~~--------~~------~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 138 AWQYDLIYIDADK--------AN------TDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp TTCEEEEEECSCG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccEEEECCCH--------HH------HHHHHHHHHHhcCCCcEEEEe
Confidence 1578999998631 11 134567788999999999984
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-09 Score=107.90 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|+|+++.. ..+++.++++|+.+.. +..
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~--------~~~- 164 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE--------LEE- 164 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC--------CCT-
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--------CCC-
Confidence 4688999999999999999999986557899999998621 2357899999987641 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~ 180 (832)
+.||+|+++.+ + . ..+|..+.++|+|||+|++.+........++..|... |..+.
T Consensus 165 --~~~D~v~~~~~-~---~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 165 --AAYDGVALDLM-E---P------------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp --TCEEEEEEESS-C---G------------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEE
T ss_pred --CCcCEEEECCc-C---H------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEE
Confidence 56899999753 1 1 1345678899999999998654433344444445433 54443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-09 Score=111.07 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++... ++.|+|||+++.. .+ .++.++++|+.+.+ +.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-- 182 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--------FD-- 182 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CC--
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--------CC--
Confidence 5678999999999999999999875 4689999999721 23 36999999998743 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++..... +. + ...+|..+.++|+|||+|++..+
T Consensus 183 -~~~fD~V~~~~~l~----~~-~-------~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 183 -KGAVTASWNNESTM----YV-D-------LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp -TTCEEEEEEESCGG----GS-C-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCEeEEEECCchh----hC-C-------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 26789999975421 11 2 34677889999999999998654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-09 Score=110.62 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+|.+|||+|||+|..+..++...| ..|+|||++|- . ...++.++++|+... +.....+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~---------~~~~~~~ 127 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV---------APTLPDG 127 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH---------GGGSCTT
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh---------ccccccc
Confidence 5789999999999999999887654 47999999972 1 123577788876432 1112237
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.||.|++|..+.....+. ......++..+.++|+|||.|++
T Consensus 128 ~FD~i~~D~~~~~~~~~~------~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 128 HFDGILYDTYPLSEETWH------THQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp CEEEEEECCCCCBGGGTT------THHHHHHHHTHHHHEEEEEEEEE
T ss_pred CCceEEEeeeecccchhh------hcchhhhhhhhhheeCCCCEEEE
Confidence 799999997543322211 12234677889999999999986
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.2e-09 Score=108.41 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++.. + .+.|+|||+++.. .+ .++.++++|+.+.. +.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-- 129 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH--------MD-- 129 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--------CC--
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--------cC--
Confidence 478899999999999999988876 2 4599999999621 11 35889999998742 10
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..+.||+|++...+. +.. ........+|..+.++|+|||+|++.++.
T Consensus 130 ~~~~fD~v~~~~~l~----~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 130 LGKEFDVISSQFSFH----YAF---STSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CSSCEEEEEEESCGG----GGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCCcCEEEECchhh----hhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 126799999986432 110 11122456788999999999999996644
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=8e-09 Score=107.55 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|+++..++..+|.++.|+|||+++- ..+. +|.++++|+.... ..+. .
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l------~~~~--~ 133 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL------ESLG--E 133 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH------HTCC--S
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH------HhcC--C
Confidence 46789999999999999999999887789999999972 1333 6899999976421 1111 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++|+.. .. ....+..+.++|+|||+||+.
T Consensus 134 ~~~fD~V~~d~~~-------~~-------~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 134 CPAFDLIFIDADK-------PN-------NPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp CCCCSEEEECSCG-------GG-------HHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCeEEEEECCch-------HH-------HHHHHHHHHHhcCCCeEEEEe
Confidence 1478999998631 11 123567788999999999974
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=101.11 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++.. .++++.++++|+.+.. + .+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--------~----~~ 96 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT--------F----DR 96 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC--------C----CC
T ss_pred CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC--------C----CC
Confidence 5679999999999999999886 4599999999721 2457899999988643 1 26
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|++.+... +... .....++..+.++|+|||+|++..
T Consensus 97 ~~D~v~~~~~l~----~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 97 QYDFILSTVVLM----FLEA-----KTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CEEEEEEESCGG----GSCG-----GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEEcchhh----hCCH-----HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 789999986422 1110 012456788899999999987743
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=104.66 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++...+ ..|+|||+++.. . .+++.++++|+.+.+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------ 127 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------------ 127 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------------
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------------
Confidence 46788999999999999999986654 499999999621 1 247889999986521
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+.||+|++...... ... .....+|..+.++|+|||+|++..+....
T Consensus 128 --~~fD~v~~~~~l~~----~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 173 (287)
T 1kpg_A 128 --EPVDRIVSIGAFEH----FGH-----ERYDAFFSLAHRLLPADGVMLLHTITGLH 173 (287)
T ss_dssp --CCCSEEEEESCGGG----TCT-----TTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred --CCeeEEEEeCchhh----cCh-----HHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 56899999764221 100 01245678899999999999997665443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=109.76 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------------------CC----CCCceEEEccCCChhHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------------------AP----IRGAVSLEQDITKPECR 97 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------------------~~----i~~V~~i~gDIt~~~~~ 97 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|||+++. +. ..++.++++|+.+...
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~- 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE- 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence 468899999999999999999998655689999999872 11 2578999999987420
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
.+.. +.||+|+++++. .|. ++..+.++|+|||+|++.+........++..+..
T Consensus 182 -----~~~~---~~fD~V~~~~~~----~~~------------~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 234 (336)
T 2b25_A 182 -----DIKS---LTFDAVALDMLN----PHV------------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT 234 (336)
T ss_dssp --------------EEEEEECSSS----TTT------------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred -----ccCC---CCeeEEEECCCC----HHH------------HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 0111 568999998631 111 3457889999999999865543333344444443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.5e-09 Score=104.33 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++.++.+|||||||+|.++..++...+ .|+|||+++.. ..+++.++++|+.+.. +.
T Consensus 35 ~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~--- 100 (227)
T 1ve3_A 35 YMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--------FE--- 100 (227)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--------SC---
T ss_pred hcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC--------CC---
Confidence 345688999999999999999988743 89999999721 1267999999998743 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++++... .+... ....++..+.++|+|||+|++..+
T Consensus 101 ~~~~D~v~~~~~~~---~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 101 DKTFDYVIFIDSIV---HFEPL------ELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp TTCEEEEEEESCGG---GCCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcEEEEEEcCchH---hCCHH------HHHHHHHHHHHHcCCCcEEEEEec
Confidence 15789999985411 11111 124577889999999999998654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-08 Score=103.90 Aligned_cols=100 Identities=20% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++... ++.|+|||+++.. .+ +++.++++|+.+.+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 153 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------------ 153 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------------
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC------------
Confidence 4678899999999999999998875 4599999999721 22 35889999986531
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+.||+|++...... ... .....+|..+.++|+|||+|++..+....
T Consensus 154 --~~fD~v~~~~~l~~----~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 --EPVDRIVSIEAFEH----FGH-----ENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp --CCCSEEEEESCGGG----TCG-----GGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred --CCcCEEEEeChHHh----cCH-----HHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 56899999864321 110 11245678899999999999997765554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.5e-08 Score=96.66 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-----CceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-----GAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-----~V~~i~gDIt~~~~~~~l~~~L 104 (832)
.++.+|||||||+|.++..++...+ ...|+|||+++.. .++ ++.++++|+.....
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 98 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK-------- 98 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG--------
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc--------
Confidence 3578999999999999999998754 4699999999721 122 79999999976431
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. .+.||+|++..... +..+ .....+|..+.++|+|||.|++..+
T Consensus 99 ~---~~~fD~V~~~~~l~----~~~~-----~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 99 R---FSGYDAATVIEVIE----HLDE-----NRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp G---GTTCSEEEEESCGG----GCCH-----HHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred c---cCCCCEEEEHHHHH----hCCH-----HHHHHHHHHHHHhhCCCEEEEEccc
Confidence 1 16789999975421 1111 1134677889999999998877544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=105.49 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++... ++.|+|||+++.. .+ .++.++++|+...+ +.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~-- 126 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP--------FE-- 126 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC--------CC--
Confidence 4678999999999999999999875 4699999999621 22 35899999998743 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++..... |..+. ..+|..+.++|+|||+|++..+
T Consensus 127 -~~~fD~v~~~~~l~----~~~~~-------~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 127 -DASFDAVWALESLH----HMPDR-------GRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp -TTCEEEEEEESCTT----TSSCH-------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCCccEEEEechhh----hCCCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 26789999976532 22221 3567889999999999998665
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=111.05 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC--CceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR--GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||||||+|+++..++.. +..|+|||+++.. .+. ++.++++|+.+... .....
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~-----~~~~~- 222 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ-----REERR- 222 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH-----HHHHH-
T ss_pred CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH-----HHHhc-
Confidence 46789999999999999999885 3499999999721 234 38899999876321 11100
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC--CHHHHHHHHHHcc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ--DYSSVLYCLKQLF 176 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~--d~~~ll~~L~~~F 176 (832)
...||+|++|++....+.. ...+........++..+.++|+|||+|++....+. ....+..++...+
T Consensus 223 -~~~fD~Ii~dPP~~~~~~~-~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~ 291 (332)
T 2igt_A 223 -GSTYDIILTDPPKFGRGTH-GEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETM 291 (332)
T ss_dssp -TCCBSEEEECCCSEEECTT-CCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHT
T ss_pred -CCCceEEEECCccccCCch-HHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1578999999752211100 00001112234677888999999999777554433 3455566666544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=108.44 Aligned_cols=142 Identities=13% Similarity=0.027 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||||||+|+++..++...+ ...|+|||+++.. ..+++.++++|+.... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~---------~ 163 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV---------R 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH---------H
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH---------H
Confidence 5678999999999999999987643 5699999999621 1257899999976421 1
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHH-HHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHc-ccce
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNAL-VIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQL-FEKV 179 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L-~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~-F~~V 179 (832)
....+.||+|++|..... +.. ..| ...++..+.++|+|||+|++....+. ....+...|... |..|
T Consensus 164 ~~~~~~fDvIi~d~~~~~---~~~-----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 164 QTPDNTYDVVIIDTTDPA---GPA-----SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASV 235 (304)
T ss_dssp SSCTTCEEEEEEECC-----------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEE
T ss_pred hccCCceeEEEECCCCcc---ccc-----hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcE
Confidence 101267999999864211 110 011 14567889999999999998654332 234566777777 9887
Q ss_pred EEec-CCCCCCCCcceeEEEee
Q 003302 180 EVDK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 180 ~~~K-P~sSR~~SaEiyvVc~g 200 (832)
.++. +..+.+...-.|++|..
T Consensus 236 ~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 236 QYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp EEEECCCTTSTTSCCEEEEEES
T ss_pred EEEEeecccccCcceEEEEEeC
Confidence 7653 23344344456777754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=111.68 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||||||||+|+..++.. ++.|+|||+++.. .+. ..+.++|+.+. +...
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~---------l~~~- 277 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPT---------LRGL- 277 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHH---------HHTC-
T ss_pred hcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHH---------HHHh-
Confidence 457999999999999999999986 3459999999731 122 24567776542 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHHcc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQLF 176 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~~F 176 (832)
.+.||+|++|++....+. .+..........++..+.++|+|||+|++..... .....+...+...+
T Consensus 278 ~~~fD~Ii~dpP~f~~~~--~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~ 344 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRP--EELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAA 344 (393)
T ss_dssp CCCEEEEEECCCCCCSSG--GGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCcCCCCH--HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 134899999975322221 1222223344677888999999999999755543 34455555555443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.7e-09 Score=106.23 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.++.+|||||||+|.++..++.. ++.|+|||+++.. ..+++.++++|+.+.. +.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~--- 101 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP--------LP--- 101 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC--------SC---
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC--------CC---
Confidence 3577899999999999999999876 4699999999721 2467999999997743 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++.... +|..+ ...++..+.++|+|||+|++.
T Consensus 102 ~~~fD~v~~~~~l----~~~~~-------~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 102 DESVHGVIVVHLW----HLVPD-------WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TTCEEEEEEESCG----GGCTT-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEEECCch----hhcCC-------HHHHHHHHHHHCCCCcEEEEE
Confidence 2678999997542 23222 235678889999999999986
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-09 Score=111.00 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++..+.+++.|+|||+++.. ..+++.++++|+.++ +.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~---------~~-- 176 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---------IS-- 176 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---------CC--
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc---------Cc--
Confidence 4678999999999999999999885446799999998621 235789999999762 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
.+.||+|+++.+ + . ..+|..+.++|+|||+|++.+........+...+... |..+.+
T Consensus 177 -~~~fD~Vi~~~~-~------~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 177 -DQMYDAVIADIP-D------P---------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp -SCCEEEEEECCS-C------G---------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred -CCCccEEEEcCc-C------H---------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEE
Confidence 157899999742 1 1 1345678899999999998654332233344444332 444443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-09 Score=114.59 Aligned_cols=102 Identities=10% Similarity=0.171 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|+++.. +. + .+.|+|||+++. ..+ .++.++++|+.+..
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------------ 256 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------------ 256 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------------
T ss_pred cCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------------
Confidence 35789999999999999988 66 3 679999999972 133 46899999987631
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
+.||+|++|++... ...+..+.++|+|||+|++..+... ...+...+...
T Consensus 257 --~~fD~Vi~dpP~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~ 306 (336)
T 2yx1_A 257 --VKGNRVIMNLPKFA---------------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKK 306 (336)
T ss_dssp --CCEEEEEECCTTTG---------------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHH
T ss_pred --CCCcEEEECCcHhH---------------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHh
Confidence 56799999975321 1345567899999999998666555 56666666665
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-09 Score=107.11 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||+|||+|.++..++.. +..|+|||+++. . ..+++.++++|+.+... +. ..+.||
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-------~~--~~~~fD 113 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANAPHADVYEWNGKGELP-------AG--LGAPFG 113 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCC-------TT--CCCCEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccC-------Cc--CCCCEE
Confidence 467899999999999999999987 469999999972 1 25689999999964210 11 026799
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
+|+++..+ ..+|..+.++|+|||+|+. +........+...+... |..+.+
T Consensus 114 ~v~~~~~~-----------------~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 114 LIVSRRGP-----------------TSVILRLPELAAPDAHFLY-VGPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp EEEEESCC-----------------SGGGGGHHHHEEEEEEEEE-EESSSCCTHHHHHHHHTTCEEEEE
T ss_pred EEEeCCCH-----------------HHHHHHHHHHcCCCcEEEE-eCCcCCHHHHHHHHHHCCCeEEEE
Confidence 99997321 1234567899999999993 33333444555556543 544443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-09 Score=108.87 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------C--CCCceEEEccCCChhHHHHHHHHHh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------P--IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~--i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|+|+++.. . .+++.++++|+.... +.
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--------~~ 168 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--------LP 168 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--------CC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--------CC
Confidence 4678899999999999999999876557899999998621 1 357899999987642 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH--cccceEEec
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ--LFEKVEVDK 183 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~--~F~~V~~~K 183 (832)
.+.||+|+++++ ..| .+|..+.++|+|||+|++.+........++..+.. .|..+.++.
T Consensus 169 ---~~~~D~v~~~~~----~~~------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~ 229 (280)
T 1i9g_A 169 ---DGSVDRAVLDML----APW------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWE 229 (280)
T ss_dssp ---TTCEEEEEEESS----CGG------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred ---CCceeEEEECCc----CHH------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEE
Confidence 157899999753 111 24567889999999999966554444455555554 466666553
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=108.52 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CC-----CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PI-----RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i-----~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++.+|||||||+|.++..++.. +..|+|||+++. . .. .++.++++|+.+...
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----------- 147 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL----------- 147 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-----------
T ss_pred CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-----------
Confidence 3459999999999999999886 468999999972 1 11 468999999987531
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++.... -.|.. ......+|..+.++|+|||+|++.++..
T Consensus 148 -~~~fD~v~~~~~~---~~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 148 -DKRFGTVVISSGS---INELD-----EADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp -SCCEEEEEECHHH---HTTSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CCCcCEEEECCcc---cccCC-----HHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 2778999874210 01111 1223567888999999999999977654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-09 Score=110.47 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++... ++.|+|||+++.. .+ +++.++++|+.+.+ +.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~-- 147 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--------CE-- 147 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--------SC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC--------CC--
Confidence 4678999999999999999999875 3599999999721 12 46899999998753 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++..... +..+ ...+|..+.++|+|||+|++..+
T Consensus 148 -~~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 148 -DNSYDFIWSQDAFL----HSPD-------KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp -TTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCEeEEEecchhh----hcCC-------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 16789999976432 1122 24677889999999999998654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-09 Score=108.08 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-----CCCceEEEccCCChhHHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-----IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-----i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|||+++.. . ..++.++++|++...
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-------- 146 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC--------
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc--------
Confidence 5688999999999999999999887656799999999621 1 347889999987532
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.. .+.||+|++++.+. . ++..+.++|+|||+|++.+..
T Consensus 147 ~~---~~~fD~i~~~~~~~----~-------------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 147 AE---EAPYDAIHVGAAAP----V-------------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GG---GCCEEEEEECSBBS----S-------------CCHHHHHTEEEEEEEEEEESC
T ss_pred cc---CCCcCEEEECCchH----H-------------HHHHHHHhcCCCcEEEEEEec
Confidence 11 15789999986431 0 123567899999999996543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=111.96 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||||||+|.++..++...| ...|+|||+++.. .-..+.++++|+.... .+.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-------------~~~ 261 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-------------KGR 261 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-------------CSC
T ss_pred CCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-------------cCC
Confidence 467899999999999999998865 4689999999731 1123567888887531 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
||+|+++++...+..+.. .....++..+.++|+|||.|++...+...|.. .+..+|..+..+
T Consensus 262 fD~Iv~~~~~~~g~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~l~~~f~~~~~~ 323 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFLPYPD---VLDETFGFHEVI 323 (343)
T ss_dssp EEEEEECCCCCSSSHHHH------HHHHHHHHHHGGGEEEEEEEEEEEETTSSHHH---HHHHHHSCCEEE
T ss_pred eeEEEECCCcccCccCCH------HHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHH---HHHHhcCceEEE
Confidence 899999986543322221 22456788999999999999996666555554 455667666554
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-09 Score=108.42 Aligned_cols=102 Identities=13% Similarity=0.018 Sum_probs=69.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||||||+|.++..++... ...|+|||+++.. .-.++.++++|+.+.. ..+. .
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~------~~~~---~ 126 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA------PTLP---D 126 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG------GGSC---T
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh------cccC---C
Confidence 3578899999999999999997643 3489999999721 1146888999986531 0011 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|++|........+ .......++..+.++|+|||+|++.
T Consensus 127 ~~fD~V~~d~~~~~~~~~------~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 127 GHFDGILYDTYPLSEETW------HTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TCEEEEEECCCCCBGGGT------TTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CceEEEEECCcccchhhh------hhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 679999996321110111 1122345688899999999999874
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=96.27 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||+|||+|.++..++... ..|+|||+++.. ..+++.++++| .. +. .+.||
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~--------~~---~~~~D 77 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KE--------IP---DNSVD 77 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GG--------SC---TTCEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CC--------CC---CCceE
Confidence 4677899999999999999998874 389999999721 25689999988 11 11 26789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC------------CHHHHHHHHHHcccceEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ------------DYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~------------d~~~ll~~L~~~F~~V~~ 181 (832)
+|++..... +..+ ...++..+.++|+|||+|++..+... +...+...|. -|..+..
T Consensus 78 ~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~ 145 (170)
T 3i9f_A 78 FILFANSFH----DMDD-------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKR 145 (170)
T ss_dssp EEEEESCST----TCSC-------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEE
T ss_pred EEEEccchh----cccC-------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEc
Confidence 999986432 1111 23567788999999999999765432 2335555555 6666665
Q ss_pred e
Q 003302 182 D 182 (832)
Q Consensus 182 ~ 182 (832)
.
T Consensus 146 ~ 146 (170)
T 3i9f_A 146 F 146 (170)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=102.09 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++.. ++.|+|||+++- ..++++.++++|+..... .
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~--- 140 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------A--- 140 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------G---
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------c---
Confidence 467899999999999999999988 469999999972 135679999999876321 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+.||+|++++.+. +..+ .+.++|+|||+|++.+..
T Consensus 141 ~~~~D~i~~~~~~~----~~~~-------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPP----EIPT-------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCS----SCCT-------------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchh----hhhH-------------HHHHhcccCcEEEEEEcC
Confidence 16789999986532 2221 357899999999996644
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=104.86 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++...+ ++.|+|||+++- ..+ ++|.++++|+..... ..+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~---- 139 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE-----NVN---- 139 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH-----HHT----
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-----hhc----
Confidence 4678999999999999999998655 789999999972 123 379999999976321 011
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|++++.+.. ....+..+.++|+|||+||+
T Consensus 140 ~~~fD~V~~~~~~~~--------------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 140 DKVYDMIFIDAAKAQ--------------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TSCEEEEEEETTSSS--------------HHHHHHHHGGGEEEEEEEEE
T ss_pred cCCccEEEEcCcHHH--------------HHHHHHHHHHhcCCCeEEEE
Confidence 167899999864210 12456778899999999987
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=107.10 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------C--CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------P--IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~--i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
..+.+|||||||+|+++..++.+.+ ...|++||+++.. . .+++.++++|+... +.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---------l~ 158 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY---------VR 158 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---------GG
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---------Hh
Confidence 3457999999999999999988754 5799999999621 1 35789999987542 11
Q ss_pred hccCCcccEEEeCCCCC-CCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceE
Q 003302 106 EHGVRAFDLVLHDGSPN-VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVE 180 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapn-v~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~ 180 (832)
. ..+.||+|++|+... .+. .... .....+..+.++|+|||+|++.+..+. . +..++..|...|..|.
T Consensus 159 ~-~~~~fD~Ii~d~~~~~~~~---~~~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 230 (296)
T 1inl_A 159 K-FKNEFDVIIIDSTDPTAGQ---GGHL----FTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR 230 (296)
T ss_dssp G-CSSCEEEEEEEC-------------C----CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred h-CCCCceEEEEcCCCcccCc---hhhh----hHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceE
Confidence 1 126799999996421 110 0000 114567788999999999999643321 2 3455667777798877
Q ss_pred Eec-CCCCCCCCcceeEEEee
Q 003302 181 VDK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~g 200 (832)
.+. +..+-+...-.|++|..
T Consensus 231 ~~~~~vp~~p~g~~~f~~as~ 251 (296)
T 1inl_A 231 VYLGFMTTYPSGMWSYTFASK 251 (296)
T ss_dssp EEEEECTTSTTSEEEEEEEES
T ss_pred EEEeecCccCCCceEEEEecC
Confidence 653 22233344567778764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=104.82 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++.. .+ ++.++++|+.+... .+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------------~~ 183 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI------------QE 183 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC------------CS
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc------------cC
Confidence 6789999999999999999987 4599999999721 22 78999999987431 27
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|++++... |..+ .....+|..+.++|+|||.|++..
T Consensus 184 ~fD~i~~~~~~~----~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 184 NYDFIVSTVVFM----FLNR-----ERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CEEEEEECSSGG----GSCG-----GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEEccchh----hCCH-----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999986432 1111 112457788999999999988744
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=107.93 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=82.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++..+++.+.|+|+|+++.. .+ +++.++++|+.+. +..
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~- 179 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---------FDE- 179 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---------CSC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---------ccC-
Confidence 4678899999999999999999986657899999998721 22 4688889998753 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEec
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDK 183 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~K 183 (832)
+.||+|+++++ + . ..+|..+.++|+|||+|++.+........+...|... |..+.++.
T Consensus 180 --~~~D~V~~~~~-~---~------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 180 --KDVDALFLDVP-D---P------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp --CSEEEEEECCS-C---G------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred --CccCEEEECCc-C---H------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEE
Confidence 56899999853 1 1 1345677899999999998664333334455555543 66665553
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=105.10 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CC-----C-C----------------------
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PI-----R-G---------------------- 83 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i-----~-~---------------------- 83 (832)
++.+|||+|||+|.++..++..+ .+...|+|||+++.. .. . .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 56799999999999999999873 125689999999621 11 1 1
Q ss_pred ---ce-------------EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh
Q 003302 84 ---AV-------------SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ 147 (832)
Q Consensus 84 ---V~-------------~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~ 147 (832)
+. ++++|+.+..... .+.. ...||+|+|+++......|..+ ........++..+.+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~--~~~fD~Iv~npp~~~~~~~~~~--~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALS----AVLA--GSAPDVVLTDLPYGERTHWEGQ--VPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHH----HHHT--TCCCSEEEEECCGGGSSSSSSC--CCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccceeecccccccccc----cccC--CCCceEEEeCCCeecccccccc--ccccHHHHHHHHHHH
Confidence 56 8899998743110 0001 1378999999753332333210 112334567888999
Q ss_pred hcccCcEEEEEEcCC
Q 003302 148 FLAPKGTFVTKVFRS 162 (832)
Q Consensus 148 ~LkpGG~fV~KVFrs 162 (832)
+|+|||+|++ +..+
T Consensus 203 ~LkpgG~l~~-~~~~ 216 (250)
T 1o9g_A 203 ALPAHAVIAV-TDRS 216 (250)
T ss_dssp HSCTTCEEEE-EESS
T ss_pred hcCCCcEEEE-eCcc
Confidence 9999999998 5433
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-09 Score=102.75 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|.++..++... +..|+|||+++.. ..+++.++++|+.+.+ +. .
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~---~ 87 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP--------FK---D 87 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC--------SC---T
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC--------CC---C
Confidence 3567899999999999854443332 5699999999721 1246889999998743 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+.||+|++..... ++.. .....++..+.++|+|||+|++.++...
T Consensus 88 ~~fD~v~~~~~l~---~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 88 ESMSFVYSYGTIF---HMRK------NDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp TCEEEEEECSCGG---GSCH------HHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CceeEEEEcChHH---hCCH------HHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 6789999975321 1111 1235678889999999999999777543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=108.52 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C--------CCCceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P--------IRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~--------i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
..+.+|||||||+|+++..++++.+ ...|++||+++.. + .+++.++++|+... +
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~---------l 145 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---------L 145 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---------H
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH---------H
Confidence 4568999999999999999988654 5699999999621 1 35789999998642 1
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHH-HHHHHHHHHhhcccCcEEEEEEcC-----CCCHHHHHHHHHHcccc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNAL-VIDSVKLATQFLAPKGTFVTKVFR-----SQDYSSVLYCLKQLFEK 178 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L-~~~aLk~A~~~LkpGG~fV~KVFr-----s~d~~~ll~~L~~~F~~ 178 (832)
.. ..+.||+|++|+....+ .... . ..| ....+..+.++|+|||.|++.... ...+..+...+...|..
T Consensus 146 ~~-~~~~fD~Ii~d~~~~~~-~~~~--~--~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~ 219 (314)
T 1uir_A 146 ER-TEERYDVVIIDLTDPVG-EDNP--A--RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219 (314)
T ss_dssp HH-CCCCEEEEEEECCCCBS-TTCG--G--GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSE
T ss_pred Hh-cCCCccEEEECCCCccc-ccCc--c--hhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCc
Confidence 11 12679999999753220 0011 0 011 245677899999999999986432 22355666778888987
Q ss_pred eEEecC-CCCCCCCcceeEEEee
Q 003302 179 VEVDKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 179 V~~~KP-~sSR~~SaEiyvVc~g 200 (832)
+..+.- ..+. ...-.|++|..
T Consensus 220 v~~~~~~vP~~-~g~~~~~~as~ 241 (314)
T 1uir_A 220 VRSYKNHIPGF-FLNFGFLLASD 241 (314)
T ss_dssp EEEEEEEEGGG-TEEEEEEEEES
T ss_pred eEEEEEecCCC-CCeEEEEEEEC
Confidence 765421 1111 22345667653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.2e-09 Score=104.78 Aligned_cols=97 Identities=26% Similarity=0.335 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.++.+|||||||+|.++..++.. + ...|+|||+++. ....++.++++|+.... +. .+.|
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~---~~~f 108 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLH--------LP---QDSF 108 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC--------CC---TTCE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc--------CC---CCCc
Confidence 46789999999999999999886 2 238999999962 12246889999987642 11 2678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
|+|++..... +..+ ...+|..+.++|+|||+|++.++.
T Consensus 109 D~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALH----YVED-------VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEecccc----ccch-------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9999975321 1111 245678889999999999996643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=109.82 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCC------CceEEEccCCChhHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIR------GAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~------~V~~i~gDIt~~~~~~~l~~~ 103 (832)
.++.+|||||||+|+.+..++.. ..+.|+|||+++ |. ... ++.++++|+........+...
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 45789999999999866555443 246899999997 21 111 256778888553322222211
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+ ..++||+|+|..+.++. |...+ ...+|+.+.++|+|||+|++.+.
T Consensus 125 ~---~~~~FD~V~~~~~lhy~--~~~~~------~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 125 F---YFGKFNIIDWQFAIHYS--FHPRH------YATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp C---CSSCEEEEEEESCGGGT--CSTTT------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c---cCCCeeEEEECchHHHh--CCHHH------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 22689999997543211 11111 14678899999999999998654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.5e-09 Score=102.90 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||+|||+|.++..+ + ...|+|||+++.. ..+++.++++|+.+.+ +. .+.||+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~~---~~~fD~ 98 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP--------FP---GESFDV 98 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC--------SC---SSCEEE
T ss_pred CCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC--------CC---CCcEEE
Confidence 47889999999999998776 2 2389999999721 2367899999998743 11 267899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|++..... +..+ ...+|..+.++|+|||.|++.++....
T Consensus 99 v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 99 VLLFTTLE----FVED-------VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EEEESCTT----TCSC-------HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EEEcChhh----hcCC-------HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99986432 1111 235678899999999999998776654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.5e-08 Score=103.37 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=92.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------C--CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------P--IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~--i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.+|||||||+|+++..++.+.+ ...|++||+++.. . .+++.++++|+... +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~---------l~~ 144 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---------IAK 144 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---------HHT
T ss_pred CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---------Hhh
Confidence 468999999999999999887643 5799999999621 1 35789999998642 111
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceEEe
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~~~ 182 (832)
..+.||+|++|+....+. ..+.. ....+..+.++|+|||.|++.+..+. . +..+...++..|..|..+
T Consensus 145 -~~~~fD~Ii~d~~~~~~~---~~~l~----~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~ 216 (275)
T 1iy9_A 145 -SENQYDVIMVDSTEPVGP---AVNLF----TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLY 216 (275)
T ss_dssp -CCSCEEEEEESCSSCCSC---CCCCS----TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEE
T ss_pred -CCCCeeEEEECCCCCCCc---chhhh----HHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEE
Confidence 126799999997421111 00000 12456678899999999999654332 1 345566778889887765
Q ss_pred c-CCCCCCCCcceeEEEee
Q 003302 183 K-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 183 K-P~sSR~~SaEiyvVc~g 200 (832)
. +..+.+...-.|++|..
T Consensus 217 ~~~vp~~~~g~w~~~~ask 235 (275)
T 1iy9_A 217 TANIPTYPSGLWTFTIGSK 235 (275)
T ss_dssp EECCTTSGGGCEEEEEEES
T ss_pred EEecCcccCcceEEEEeeC
Confidence 3 22232233456777754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-08 Score=102.79 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++..++.++.|+|||+++.. .+ .++.++++|+.+. +........
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-----~~~~~~~~~ 142 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET-----LDELLAAGE 142 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH-----HHHHHHTTC
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH-----HHHHHhcCC
Confidence 467899999999999999999988767899999999721 22 4688999987642 111111101
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++|+... . ....+..+.++|+|||+|++.
T Consensus 143 ~~~~D~v~~d~~~~--------~------~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 143 AGTFDVAVVDADKE--------N------CSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp TTCEEEEEECSCST--------T------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccEEEECCCHH--------H------HHHHHHHHHHHcCCCeEEEEE
Confidence 14689999986411 0 124567788999999999983
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.5e-09 Score=109.56 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||||||+|.++..++.. +..|+|||+++.. ...++.+.++|+..... ..+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~- 126 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-----DVP- 126 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-----HSC-
T ss_pred cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-----ccc-
Confidence 36789999999999999999887 4599999999721 12457788899876431 011
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..+.||+|+|.|... .+..+..........+|..+.++|+|||+|++.+.
T Consensus 127 --~~~~fD~V~~~g~~l---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 127 --AGDGFDAVICLGNSF---AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp --CTTCEEEEEECTTCG---GGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --cCCCeEEEEEcChHH---hhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 126789999974210 11111000012235678899999999999998654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=100.37 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C----CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P----IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++ +|||||||+|.++..++.. +..|+|||+++.. . -.++.++++|+.+.. +. .
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~---~ 92 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD--------IV---A 92 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS--------CC---T
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC--------CC---c
Confidence 4567 9999999999999988876 4599999999721 0 127889999998753 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+.||+|++... ++... ....+|..+.++|+|||.|++.++...
T Consensus 93 ~~fD~v~~~~~-----~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 93 DAWEGIVSIFC-----HLPSS------LRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp TTCSEEEEECC-----CCCHH------HHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred CCccEEEEEhh-----cCCHH------HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 67899998521 22111 234677889999999999999876544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=102.28 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCC----CCCEEEEEeCCCCC-----------C-----CCCceEEEccCCChhHHH
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVP----VGSLVLGLDLVPIA-----------P-----IRGAVSLEQDITKPECRA 98 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p----~~~~ViGVDLsp~~-----------~-----i~~V~~i~gDIt~~~~~~ 98 (832)
.+.++.+|||||||+|.++..++..++ +.+.|+|||+++.. . ..++.++++|+.......
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 357889999999999999999999875 46799999999621 2 457999999987632100
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.... +.||+|+++++.. + ++..+.++|+|||+|++.+..
T Consensus 157 ----~~~~---~~fD~I~~~~~~~----~-------------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 ----KKEL---GLFDAIHVGASAS----E-------------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp ----HHHH---CCEEEEEECSBBS----S-------------CCHHHHHHEEEEEEEEEEEEE
T ss_pred ----CccC---CCcCEEEECCchH----H-------------HHHHHHHhcCCCcEEEEEEcc
Confidence 0111 6789999986532 1 123567899999999996543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-09 Score=103.69 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++.+|||||||+|.++..++... ...|+|||+++. ..+ +++.++++|+.+.. ....
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 121 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL---------KQPQ 121 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT---------TSCC
T ss_pred CCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH---------Hhhc
Confidence 57899999999999999876652 358999999962 133 57899999976421 1111
Q ss_pred CCc-ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHH--HhhcccCcEEEEEEc
Q 003302 109 VRA-FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLA--TQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~-FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A--~~~LkpGG~fV~KVF 160 (832)
.+. ||+|++|++.. + .. ...++..+ .++|+|||.|++...
T Consensus 122 ~~~~fD~I~~~~~~~----~--~~------~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 122 NQPHFDVVFLDPPFH----F--NL------AEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp SSCCEEEEEECCCSS----S--CH------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCC----C--cc------HHHHHHHHHhcCccCCCcEEEEEEC
Confidence 257 89999997522 1 00 12233444 568999999998553
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=104.19 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------C-------------CCCCceEEEccCCChhHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------A-------------PIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~-------------~i~~V~~i~gDIt~~~~~~~ 99 (832)
..+.+|||||||+|+++..++.+ + ...|++||+++. . ..+++.++++|+...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~----- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF----- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH-----
Confidence 45689999999999999999887 4 579999999962 1 125688889887542
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHc
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQL 175 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~ 175 (832)
+ .. .+.||+|++|+....+. .... .....+..+.++|+|||.|++...... . +..+...+...
T Consensus 147 l----~~--~~~fD~Ii~d~~~~~~~---~~~l----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 213 (281)
T 1mjf_A 147 I----KN--NRGFDVIIADSTDPVGP---AKVL----FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV 213 (281)
T ss_dssp H----HH--CCCEEEEEEECCCCC--------T----TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred h----cc--cCCeeEEEECCCCCCCc---chhh----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence 1 11 16789999997521110 0110 023567788999999999998643321 2 34455566677
Q ss_pred ccceEEec-CCCCCCCCcceeEEEee
Q 003302 176 FEKVEVDK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 176 F~~V~~~K-P~sSR~~SaEiyvVc~g 200 (832)
|..+..+. +..+. ...-.|++|..
T Consensus 214 f~~v~~~~~~vP~~-~g~~~~~~as~ 238 (281)
T 1mjf_A 214 FDRVYYYSFPVIGY-ASPWAFLVGVK 238 (281)
T ss_dssp CSEEEEEEECCTTS-SSSEEEEEEEE
T ss_pred CCceEEEEEecCCC-CceEEEEEeeC
Confidence 88777643 22222 33456777754
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=109.38 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|+++..++.. ...|+|||+++. +.+.++.++++|+.+.. .. +.. ...
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~-----~~-~~~-~~~ 278 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL-----RR-LEK-EGE 278 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH-----HH-HHH-TTC
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHH-----HH-HHh-cCC
Confidence 6789999999999999999987 468999999962 13556899999987532 11 110 115
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.||+|++|++....+. .............+..+.++|+|||+|++.....
T Consensus 279 ~fD~Ii~dpP~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGK--KDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CEEEEEECCCCSCCST--TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CeeEEEECCCCCCCCh--hHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7899999985322111 1112222344567888999999999999876543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-08 Score=108.42 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC--CceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR--GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||||||+|+++..++.. + ...|+|||+++.. .+. ++.++++|+.+.. .. +..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l-----~~-~~~- 281 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF-----KY-ARR- 281 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH-----HH-HHH-
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH-----HH-HHH-
Confidence 57889999999999999999875 2 3489999999832 344 7899999987521 11 111
Q ss_pred cCCcccEEEeCCCCCCCC-CchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGG-AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g-~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~~~ 175 (832)
....||+|++|++....+ ....+. ......++..+..+|+|||+|++...... ....+...+...
T Consensus 282 ~~~~fD~Ii~DPP~~~~~~~~~~~~---~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~ 348 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARNKKEVFSV---SKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKG 348 (385)
T ss_dssp TTCCEEEEEECCCCC-----CCCCH---HHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred hCCCccEEEECCCCCCCChhhHHHH---HHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHH
Confidence 014789999998542110 111111 12234567788999999999998665443 334444444443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=97.51 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. + ...|+|||+++.. .+ +++.++++|+.+.. .. .
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~-~ 97 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI---------DC-L 97 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH---------HH-B
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH---------Hh-h
Confidence 46789999999999999998876 3 4699999999621 22 35888999886521 11 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHH--HhhcccCcEEEEEEcCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLA--TQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A--~~~LkpGG~fV~KVFrs~ 163 (832)
...||+|+++++. .... ....+..+ .++|+|||+|++.+....
T Consensus 98 ~~~fD~i~~~~~~------~~~~------~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPY------AKET------IVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSS------HHHH------HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCC------Ccch------HHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 1568999998642 1111 12223333 489999999999665443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-08 Score=103.32 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||+|||+|.++..++..++ ++.|+|||+++.. ..+++.++++|+...+ +. .+.||+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~~---~~~fD~ 151 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP--------FS---DTSMDA 151 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS--------BC---TTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC--------CC---CCceeE
Confidence 5788999999999999999998874 5699999999721 2467889999987643 11 167899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|++...+. .+..+.++|+|||+|++.++....
T Consensus 152 v~~~~~~~------------------~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 152 IIRIYAPC------------------KAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp EEEESCCC------------------CHHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEEeCChh------------------hHHHHHHhcCCCcEEEEEEcCHHH
Confidence 99865421 245678999999999997766544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-08 Score=102.70 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCc---CHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHH---HHHHHHHhh
Q 003302 42 SSHAVLDLCAAP---GGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECR---ARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGP---Gg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~---~~l~~~L~~ 106 (832)
...+|||||||+ |.++..+....| ++.|+|||++|. . ..+++.++++|++++... ..+...+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d- 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID- 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC-
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC-
Confidence 347999999999 999888877765 679999999972 1 235799999999986421 00111222
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
...||+|++.+.. +|..+.. ...+|+.+.++|+|||+|++..+...
T Consensus 155 --~~~~d~v~~~~vl----h~~~d~~-----~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 155 --FSRPAAIMLVGML----HYLSPDV-----VDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp --TTSCCEEEETTTG----GGSCTTT-----HHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred --CCCCEEEEEechh----hhCCcHH-----HHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 2468999997642 2333321 24578889999999999999777653
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=102.56 Aligned_cols=98 Identities=10% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc-
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH- 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~- 107 (832)
.++.+|||||||+|.++..++..+|.++.|+|||+++-. .+ .+|.++++|+.+. +. .+...
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-----l~-~l~~~~ 151 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-----LD-EMIKDE 151 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-----HH-HHHHSG
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-----HH-HHHhcc
Confidence 356899999999999999999998877899999999721 22 3588999987642 11 11100
Q ss_pred -cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 108 -GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 108 -~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+.||+|++|+... + ....+..+.++|+|||+|++.
T Consensus 152 ~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 152 KNHGSYDFIFVDADKD-------N-------YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp GGTTCBSEEEECSCST-------T-------HHHHHHHHHHHBCTTCCEEEE
T ss_pred CCCCCEEEEEEcCchH-------H-------HHHHHHHHHHhCCCCeEEEEe
Confidence 026789999996411 1 124566788999999999974
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=102.74 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||||||+|.++..|+.. ++.|+|||+++ |. ..... ++++++.+.... +.....+.||
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~------~~~~~~~~fD 112 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE------IPKELAGHFD 112 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC------CCGGGTTCCS
T ss_pred CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc------cccccCCCcc
Confidence 467899999999999999999986 46999999997 32 11111 234444332110 0000116789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+|+++...+ ++..+. ...++..+.++| |||+|++.+..+.
T Consensus 113 ~Vv~~~~l~---~~~~~~------~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 113 FVLNDRLIN---RFTTEE------ARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp EEEEESCGG---GSCHHH------HHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred EEEEhhhhH---hCCHHH------HHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 999986422 111211 245677788999 9999999765543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-08 Score=107.50 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|.+|||||||+|+|+..++... .+.|+|||++|.. .+. .|.++++|..+.. .
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~---------~-- 189 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP---------G-- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC---------C--
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc---------c--
Confidence 5789999999999999999999873 4689999999731 333 4889999988742 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||.|+++.++.. . ..|..|+.+|++||++.+-.|
T Consensus 190 -~~~~D~Vi~~~p~~~-----~----------~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 190 -ENIADRILMGYVVRT-----H----------EFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -CSCEEEEEECCCSSG-----G----------GGHHHHHHHEEEEEEEEEEEE
T ss_pred -ccCCCEEEECCCCcH-----H----------HHHHHHHHHcCCCCEEEEEee
Confidence 167899999976432 1 123457789999999877444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=106.43 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||||||+|+++..++.+.+ ...|++||+++.. + .+++.++++|+... +.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---------l~ 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---------LE 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---------HH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH---------HH
Confidence 4568999999999999999987643 5799999999621 1 36788999997642 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~~ 181 (832)
.. .+.||+|++|+....+. .... .....+..+.++|+|||.|++...... .+..+...++..|..|..
T Consensus 147 ~~-~~~fD~Ii~d~~~~~~~---~~~l----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 218 (283)
T 2i7c_A 147 NV-TNTYDVIIVDSSDPIGP---AETL----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY 218 (283)
T ss_dssp HC-CSCEEEEEEECCCTTTG---GGGG----SSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred hC-CCCceEEEEcCCCCCCc---chhh----hHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEE
Confidence 11 26789999996421111 0000 014567789999999999998643221 234455667777987765
Q ss_pred ecC-CCCCCCCcceeEEEe
Q 003302 182 DKP-AASRSASAEIYLLGI 199 (832)
Q Consensus 182 ~KP-~sSR~~SaEiyvVc~ 199 (832)
+.. ..+.+..--.|++|.
T Consensus 219 ~~~~vP~y~~g~~g~~~~s 237 (283)
T 2i7c_A 219 ANISIPTYPCGCIGILCCS 237 (283)
T ss_dssp EEEECTTSGGGEEEEEEEE
T ss_pred EEEEcCCcCCCcEEEEEEe
Confidence 422 222222223577775
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=98.11 Aligned_cols=104 Identities=20% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. + ...|+|||+++.. .+ +++.++++|+.+... .+.. .
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~-~ 113 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE------QFYE-E 113 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH------HHHH-T
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH------HHHh-c
Confidence 46789999999999999988774 2 4699999999721 22 468899999875321 1110 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
.+.||+|+++++.. ...... ....+ .+.++|+|||+|++.+....
T Consensus 114 ~~~fD~i~~~~~~~---~~~~~~------~~~~l-~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 114 KLQFDLVLLDPPYA---KQEIVS------QLEKM-LERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp TCCEEEEEECCCGG---GCCHHH------HHHHH-HHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCEEEECCCCC---chhHHH------HHHHH-HHhcccCCCCEEEEEeCCcc
Confidence 26789999997521 011111 11222 24789999999998665443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=95.43 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++...+ .|+|||+++.. .+ ++.++++|+.+... .+.. ..
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------~~~~-~~ 108 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLP------EAKA-QG 108 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHH------HHHH-TT
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHH------hhhc-cC
Confidence 3678999999999999999998743 49999999721 22 78899999875211 1111 01
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
..||+|+++++.. .. ... +...+.. .++|+|||+|++.+.....
T Consensus 109 ~~~D~i~~~~~~~--~~-~~~-------~~~~~~~-~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 109 ERFTVAFMAPPYA--MD-LAA-------LFGELLA-SGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CCEEEEEECCCTT--SC-TTH-------HHHHHHH-HTCEEEEEEEEEEEETTSC
T ss_pred CceEEEEECCCCc--hh-HHH-------HHHHHHh-hcccCCCcEEEEEeCCccC
Confidence 3689999997532 11 111 1122222 5999999999997665443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-08 Score=101.52 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-------C----------CC-CCceEEEcc-CCChhHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-------A----------PI-RGAVSLEQD-ITKPECRARV 100 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-------~----------~i-~~V~~i~gD-It~~~~~~~l 100 (832)
+.++.+|||||||+|.++..++...++.+.|+|||+++. . .+ +++.++++| +.....
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---- 116 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG---- 116 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCG----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccC----
Confidence 467899999999999999999998655679999999983 1 12 468889998 432110
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+. .+.||+|++.+... +..+. ..++..+..+++|||+|++..+..
T Consensus 117 --~~~---~~~fD~v~~~~~l~----~~~~~-------~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 117 --PIA---DQHFDRVVLAHSLW----YFASA-------NALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp --GGT---TCCCSEEEEESCGG----GSSCH-------HHHHHHHHHHTTTCSEEEEEEECS
T ss_pred --CCC---CCCEEEEEEccchh----hCCCH-------HHHHHHHHHHhCCCCEEEEEEecC
Confidence 011 26789999986432 11111 123445566777799999866543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=107.97 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|+++..++.. + ...|+|||+++. ..+. ++.++++|+.+.. .. +.. .
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~-----~~-~~~-~ 286 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM-----EK-LQK-K 286 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-----HH-HHH-T
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH-----HH-HHh-h
Confidence 47899999999999999999986 2 459999999962 1344 6889999987532 11 110 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLK 173 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~ 173 (832)
...||+|++|++....+. .........+...+..+.++|+|||+|++...... ....+...+.
T Consensus 287 ~~~fD~Vi~dpP~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~ 350 (396)
T 2as0_A 287 GEKFDIVVLDPPAFVQHE--KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMII 350 (396)
T ss_dssp TCCEEEEEECCCCSCSSG--GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCH--HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 157899999975322111 11122223445678889999999999998665432 3333444443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=107.06 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------------CCCCceEEEccCCChhHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------------PIRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------------~i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
.++.+|||||||+|.++..++.. ....|+|||+++. . ...++.++++|+.+.....
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---- 106 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID---- 106 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT----
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh----
Confidence 46789999999999999988874 2569999999962 1 1236889999998753100
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.. ..+.||+|+|..+. +|.... ......+|..+.++|+|||.|++.++..
T Consensus 107 ~~~~-~~~~fD~V~~~~~l----~~~~~~---~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 107 KFRD-PQMCFDICSCQFVC----HYSFES---YEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCSS-TTCCEEEEEEETCG----GGGGGS---HHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred hccc-CCCCEEEEEEecch----hhccCC---HHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 0110 11479999997642 343111 1223467888999999999999976654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-08 Score=103.87 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CC------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------AP------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||||||+|+++..++.+.+ ...|+|||+++. .. .+++.++++|+... +.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~---------l~ 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---------LE 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---------HH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH---------Hh
Confidence 3567999999999999999987644 579999999962 11 25688999997642 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~~ 181 (832)
. ..+.||+|++|+....+. .... .....+..+.++|+|||+|++.+.... + +..+...+...|..+..
T Consensus 185 ~-~~~~fDvIi~d~~~p~~~---~~~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 256 (321)
T 2pt6_A 185 N-VTNTYDVIIVDSSDPIGP---AETL----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY 256 (321)
T ss_dssp H-CCSCEEEEEEECCCSSSG---GGGG----SSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred h-cCCCceEEEECCcCCCCc---chhh----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEE
Confidence 1 126789999997421110 0110 014567788999999999999654332 2 34455667777888765
Q ss_pred ec-CCCCCCCCcceeEEEee
Q 003302 182 DK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~K-P~sSR~~SaEiyvVc~g 200 (832)
+. +..+.+...-.|++|..
T Consensus 257 ~~~~vp~~~~g~w~f~~as~ 276 (321)
T 2pt6_A 257 ANISIPTYPCGCIGILCCSK 276 (321)
T ss_dssp EEEECTTSGGGEEEEEEEES
T ss_pred EEEEeccccCceEEEEEeeC
Confidence 53 22233222345777754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=105.29 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------------CCCCceEEEccCCChhHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------------PIRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------------~i~~V~~i~gDIt~~~~~~~l~ 101 (832)
.++.+|||||||+|+++..++...+ .+.|+|||+++.. .++++.++++|+.+.- .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l-----~ 121 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL-----P 121 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCG-----G
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHH-----H
Confidence 3678999999999999999999875 5799999999620 4568999999998621 0
Q ss_pred HHHhhccCCcccEEEeCCCCCCCCCchhHH-hHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 102 KVMEEHGVRAFDLVLHDGSPNVGGAWAQEA-MSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgapnv~g~w~~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..+. .+.||.|++..++ .|.... .....+...++..+.++|+|||.|++.+
T Consensus 122 ~~~~---~~~~d~v~~~~p~----p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 122 NFFE---KGQLSKMFFCFPD----PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp GTSC---TTCEEEEEEESCC----CC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhcc---ccccCEEEEECCC----cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 1122 2567888765421 121100 0000001356778899999999999843
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=108.28 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++...+..+.|+|||+++. ..++++.++++|+..... ..
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~-- 142 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EF-- 142 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GG--
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cC--
Confidence 468899999999999999999988664578999999972 134678999999876321 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+++++.. +.. ..+.++|+|||.|++.+
T Consensus 143 -~~fD~Iv~~~~~~----~~~-------------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 143 -SPYDVIFVTVGVD----EVP-------------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp -CCEEEEEECSBBS----CCC-------------HHHHHHEEEEEEEEEEB
T ss_pred -CCeEEEEEcCCHH----HHH-------------HHHHHhcCCCcEEEEEE
Confidence 6789999997532 111 24568999999999864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=101.62 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.++.+|||+|||+|.++..++.. + ..|+|||+++.. ......++++|+.+... .+ ..+.||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~------~~---~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM------PY---EEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCC------CS---CTTCEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCC------CC---CCCccCEEE
Confidence 57889999999999999999887 3 699999999721 11124678889875210 01 126789999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS 167 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ 167 (832)
+..... +..+ ...+|..+.++|+|||+|++.+.....+..
T Consensus 99 ~~~~l~----~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~ 138 (230)
T 3cc8_A 99 FGDVLE----HLFD-------PWAVIEKVKPYIKQNGVILASIPNVSHISV 138 (230)
T ss_dssp EESCGG----GSSC-------HHHHHHHTGGGEEEEEEEEEEEECTTSHHH
T ss_pred ECChhh----hcCC-------HHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 975321 1111 135677889999999999997766555443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=99.59 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++...++.+.|+|||+++-. .++++.++++|+.... ..
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~-- 143 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY---------EP-- 143 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC---------GG--
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---------CC--
Confidence 4678899999999999999999987555799999999621 2467889999985421 10
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|++++... +.. ..+.++|+|||+|++.+
T Consensus 144 ~~~fD~v~~~~~~~----~~~-------------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 144 LAPYDRIYTTAAGP----KIP-------------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp GCCEEEEEESSBBS----SCC-------------HHHHHTEEEEEEEEEEE
T ss_pred CCCeeEEEECCchH----HHH-------------HHHHHHcCCCcEEEEEE
Confidence 15789999986422 111 25678999999999855
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-08 Score=101.94 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++.. .+.|+|+|+++-. .+ +++.++++|+.... +..
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~- 156 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE--------VPE- 156 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC--------CCT-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc--------cCC-
Confidence 457889999999999999999988 5699999999621 23 57888999987631 011
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~ 181 (832)
+.||+|+++++ + . ..++..+.++|+|||+|++.+........+...+...|..+..
T Consensus 157 --~~~D~v~~~~~-~------~---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~~~~ 212 (248)
T 2yvl_A 157 --GIFHAAFVDVR-E------P---------WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEV 212 (248)
T ss_dssp --TCBSEEEECSS-C------G---------GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTTEEEEEE
T ss_pred --CcccEEEECCc-C------H---------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCcceE
Confidence 56899999753 1 1 1235677899999999998554332333444444333444433
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.2e-08 Score=99.93 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------CCCC-----------------------------
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------PIRG----------------------------- 83 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~i~~----------------------------- 83 (832)
.++.+|||||||+|.++..++...+ ..|+|||+++. . ...+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4578999999999999988876532 48999999962 1 1111
Q ss_pred ---c-eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 84 ---A-VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 84 ---V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+ .++++|+++... +.....+.||+|++...... ...+ ......+|..+.++|+|||+|++..
T Consensus 133 ~~~v~~~~~~d~~~~~~-------~~~~~~~~fD~v~~~~~l~~----~~~~---~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQP-------LGGVSLPPADCLLSTLCLDA----ACPD---LPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSST-------TTTCCCCCEEEEEEESCHHH----HCSS---HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCC-------CCccccCCccEEEEhhhhhh----hcCC---hHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 6 889999987431 11111157899999753110 0001 1223567888999999999999865
Q ss_pred cC---------------CCCHHHHHHHHHHc-ccceEEe
Q 003302 160 FR---------------SQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 160 Fr---------------s~d~~~ll~~L~~~-F~~V~~~ 182 (832)
+. ..+...+..+|... |..+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 199 ALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp ESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 22 12334666777655 7655543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-08 Score=102.94 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC-----C-------------------CC-------------
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP-----I-------------------RG------------- 83 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~-----i-------------------~~------------- 83 (832)
++.+|||||||||.++..++.. ....|+|||+++ |.. + .+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 6789999999999955444432 245999999997 210 0 01
Q ss_pred ---ceEEEccCCC-hhHHHHHHHHHhh--ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 84 ---AVSLEQDITK-PECRARVKKVMEE--HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 84 ---V~~i~gDIt~-~~~~~~l~~~L~~--~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.++++|+++ .+ +.. ...++||+|++.... .|.... ..-...+|..+.++|+|||+|++
T Consensus 149 ~~~~~~~~~D~~~~~~--------~~~~~~~~~~fD~V~~~~~l----~~~~~~---~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQP--------LGAGSPAPLPADALVSAFCL----EAVSPD---LASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp HHEEEEECCCTTSSST--------TCSSCSSCSSEEEEEEESCH----HHHCSS---HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhceEEecccCCCCC--------ccccccCCCCCCEEEehhhh----hhhcCC---HHHHHHHHHHHHHhcCCCCEEEE
Confidence 2355567765 21 000 111569999997531 121000 11235678899999999999998
Q ss_pred EEc---------------CCCCHHHHHHHHHHc-ccceEE
Q 003302 158 KVF---------------RSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 158 KVF---------------rs~d~~~ll~~L~~~-F~~V~~ 181 (832)
... ...+...+..+|... |..+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 421 122445666777655 765544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=96.45 Aligned_cols=136 Identities=7% Similarity=-0.002 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||||||+|.++..++...+ ++.|+|||+++. ..+. ++.++++|+.+.-. ..+.....
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM-----DALKEESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST-----TTSTTCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhh-----hhhhcccC
Confidence 577999999999999998888764 479999999972 1233 38999999765200 00111001
Q ss_pred CcccEEEeCCCCCCCCCc-h-----------hH-Hh-----------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 110 RAFDLVLHDGSPNVGGAW-A-----------QE-AM-----------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w-~-----------~D-~~-----------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
..||+|++|++....+.+ . .. .+ -.+.++...+..+..+|+++|++++.+-.....
T Consensus 139 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 218 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSL 218 (254)
T ss_dssp CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSH
T ss_pred CcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHH
Confidence 468999999754322200 0 00 00 112233445555677889999888755444444
Q ss_pred HHHHHHHHHc-ccceEEec
Q 003302 166 SSVLYCLKQL-FEKVEVDK 183 (832)
Q Consensus 166 ~~ll~~L~~~-F~~V~~~K 183 (832)
..+...|... |..|.+..
T Consensus 219 ~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 219 APLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHcCCCceEEEE
Confidence 5666666654 87777653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=117.59 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC--CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR--GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+|.+|||||||+|+|+.+++.. + ...|+|||+++. +.+. ++.++++|+.+. +.. .
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~---------l~~-~ 606 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW---------LRE-A 606 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH---------HHH-C
T ss_pred CCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH---------HHh-c
Confidence 6889999999999999998874 2 457999999962 1333 689999998752 111 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|++|++....+....+.+.........+..+.++|+|||+|++..-
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2679999999853221111011111123345678889999999999998653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-08 Score=105.59 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCC----CEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVG----SLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~----~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|||+|||+|+++..++..++.. ..|+|+|+++.. .+ ++.++++|.....
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------- 197 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------- 197 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC----------
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc----------
Confidence 356799999999999999998887532 689999999731 22 5788899987631
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhH----------HhHHHHHHHHHHHhhcccCcEEEEEE----cCCCCHHHHHHH
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMS----------QNALVIDSVKLATQFLAPKGTFVTKV----FRSQDYSSVLYC 171 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~----------q~~L~~~aLk~A~~~LkpGG~fV~KV----Frs~d~~~ll~~ 171 (832)
....||+|++|+++.+ |..+... ........+..+..+|+|||++++.+ |.+.....+...
T Consensus 198 --~~~~fD~Ii~NPPfg~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~ 272 (344)
T 2f8l_A 198 --LVDPVDVVISDLPVGY---YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKF 272 (344)
T ss_dssp --CCCCEEEEEEECCCSE---ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHH
T ss_pred --ccCCccEEEECCCCCC---cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHH
Confidence 1267899999987432 2111100 00012346778899999999999865 455555555444
Q ss_pred HH
Q 003302 172 LK 173 (832)
Q Consensus 172 L~ 173 (832)
|.
T Consensus 273 l~ 274 (344)
T 2f8l_A 273 IK 274 (344)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=104.07 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
..+.+|||||||+|+++..++.+.+ ...|++||+++.. + .+++.++++|+... +.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~---------l~ 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---------MK 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---------HH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH---------Hh
Confidence 4568999999999999999987744 5799999999621 1 35788899987541 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC----HHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD----YSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d----~~~ll~~L~~~F~~V~~ 181 (832)
. ..+.||+|++|+....+ ... .......+..+.++|+|||.|++....... ...+...++..|..+..
T Consensus 164 ~-~~~~fD~Ii~d~~~~~~----~~~---~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (304)
T 2o07_A 164 Q-NQDAFDVIITDSSDPMG----PAE---SLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY 235 (304)
T ss_dssp T-CSSCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred h-CCCCceEEEECCCCCCC----cch---hhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCcee
Confidence 1 12679999999642111 100 001235677889999999999986533221 23455667788987765
Q ss_pred ec-CCCCCCCCcceeEEEee
Q 003302 182 DK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~K-P~sSR~~SaEiyvVc~g 200 (832)
+- ...+.+...-.|++|..
T Consensus 236 ~~~~vP~~~~g~~g~~~as~ 255 (304)
T 2o07_A 236 AYCTIPTYPSGQIGFMLCSK 255 (304)
T ss_dssp EEEECTTSGGGEEEEEEEES
T ss_pred EEEEeccccCcceEEEEEeC
Confidence 42 12222222235777763
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-08 Score=100.89 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc-
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH- 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~- 107 (832)
.++.+|||+|||+|+++..++..+|.++.|++||+++.. .+. +|.++++|+.+. +. .+...
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-----l~-~l~~~~ 142 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA-----LD-NLLQGQ 142 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-----HH-HHHHST
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-----HH-HHHhcc
Confidence 356899999999999999999998878899999999721 232 488899987642 11 12110
Q ss_pred -cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 108 -GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 108 -~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+.||+|++|+.. . . ....+..+.++|+|||.|++.
T Consensus 143 ~~~~~fD~I~~d~~~-------~-~------~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 143 ESEGSYDFGFVDADK-------P-N------YIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp TCTTCEEEEEECSCG-------G-G------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCcCEEEECCch-------H-H------HHHHHHHHHHhcCCCeEEEEe
Confidence 02678999998631 1 1 134567788999999999984
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-08 Score=109.89 Aligned_cols=96 Identities=16% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCC-ceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRG-AVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.. + ...|+|||++++. .+.+ |.++++|+.+.. +. .
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~---~ 131 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE--------LP---V 131 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--------CS---S
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc--------CC---C
Confidence 46889999999999999999987 3 4699999999742 2333 899999998753 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|+++..... ..+.. ....++..+.++|+|||.|+.
T Consensus 132 ~~fD~Iis~~~~~~-l~~~~-------~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 132 EKVDIIISEWMGYC-LFYES-------MLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp SCEEEEEECCCBBT-BTBTC-------CHHHHHHHHHHHEEEEEEEES
T ss_pred CceEEEEEcccccc-ccCch-------hHHHHHHHHHHhCCCCCEEcc
Confidence 67899999853211 11111 123566778899999999974
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-09 Score=107.46 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||||||+|+++..++.. ++.|+|||+++.. .+ +++.++++|+.+.. ..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~--- 142 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SF--- 142 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GG---
T ss_pred CCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------cc---
Confidence 7889999999999999999986 4799999999721 23 47899999987632 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|+++++..... +.. ..+..+.++|+|||.+++
T Consensus 143 ~~~D~v~~~~~~~~~~----~~~-------~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 143 LKADVVFLSPPWGGPD----YAT-------AETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCSEEEECCCCSSGG----GGG-------SSSBCTTTSCSSCHHHHH
T ss_pred CCCCEEEECCCcCCcc----hhh-------hHHHHHHhhcCCcceeHH
Confidence 6789999997643211 110 122345678999998664
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-08 Score=97.90 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++... ...|+|||+++. ..++++.++++|+.+. +.. ..+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~---------~~~-~~~ 121 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---------LAQ-KGT 121 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---------HSS-CCC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---------Hhh-cCC
Confidence 57899999999999999877653 348999999972 1235789999997652 111 125
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHH--HhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLA--TQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A--~~~LkpGG~fV~KVFr 161 (832)
.||+|++|++... + . ...++..+ .++|+|||.|++....
T Consensus 122 ~fD~V~~~~p~~~-~--~---------~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 122 PHNIVFVDPPFRR-G--L---------LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CEEEEEECCSSST-T--T---------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCEEEECCCCCC-C--c---------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 7899999975221 1 0 11223333 3469999999985543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-08 Score=100.73 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++..+| ++.|+|||+++.. .+ .++.++++|+..... .+. .
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~--~ 123 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE------KLE--L 123 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH------HHT--T
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH------hcc--c
Confidence 4678999999999999999999987 6799999999621 23 358899999876311 110 0
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|++++... ....++..+.++|+|||+|++.
T Consensus 124 ~~~fD~I~~~~~~~--------------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 124 YPLFDVLFIDAAKG--------------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp SCCEEEEEEEGGGS--------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCccEEEECCCHH--------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 15789999986421 1235667888999999999985
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-07 Score=101.83 Aligned_cols=104 Identities=13% Similarity=0.281 Sum_probs=76.3
Q ss_pred HhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 31 VQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 31 iqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..+...|.-+.++.+|||||||+|.++..++...| ...++++|+..+ ...++|.++++|+.++ +
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~-- 265 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFAS---------V-- 265 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTC---------C--
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeChHHHHHhhhhcCCCEEEeCCcccC---------C--
Confidence 34455565356778999999999999999999986 579999998322 2346899999999762 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..||+|++.... .+|. +. .+..+|+.+.++|+|||+|++.
T Consensus 266 ---~~~D~v~~~~~l---h~~~-d~-----~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 266 ---PQGDAMILKAVC---HNWS-DE-----KCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp ---CCEEEEEEESSG---GGSC-HH-----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCCCEEEEeccc---ccCC-HH-----HHHHHHHHHHHhcCCCCEEEEE
Confidence 227999987432 1122 21 1346788999999999999985
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-08 Score=99.13 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||+|||+|.++..++..++.++.|+|||+++-. .+ +++.++++|+... +... .
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~-~ 125 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI---------AAGQ-R 125 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH---------HTTC-C
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH---------hccC-C
Confidence 56799999999999999999988767899999999721 22 2488899987542 1111 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+ ||+|++|+... + ....+..+.++|+|||.|++.
T Consensus 126 ~-fD~v~~~~~~~-------~-------~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 D-IDILFMDCDVF-------N-------GADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp S-EEEEEEETTTS-------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCEEEEcCChh-------h-------hHHHHHHHHHhcCCCeEEEEE
Confidence 5 89999985311 0 134567788999999999973
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.9e-08 Score=106.10 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++.. + ...|+|||++++. .+. +|.++++|+.+.. + .
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~---~ 127 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS--------L---P 127 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC--------C---S
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC--------c---C
Confidence 457889999999999999999987 2 3499999999652 233 4899999998743 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|+++..+.... +.. ....++..+.++|+|||.|++
T Consensus 128 -~~~D~Iv~~~~~~~l~-~e~-------~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 128 -EKVDVIISEWMGYFLL-RES-------MFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp -SCEEEEEECCCBTTBT-TTC-------THHHHHHHHHHHEEEEEEEES
T ss_pred -CcceEEEEcChhhccc-chH-------HHHHHHHHHHhhCCCCeEEEE
Confidence 6789999976432211 100 123456777899999999985
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=94.30 Aligned_cols=106 Identities=11% Similarity=-0.025 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++.. + ...|+|||+++.. .+ ++.++++|+.+.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-------------- 110 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-------------- 110 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--------------
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--------------
Confidence 46789999999999999999886 2 3489999999621 12 6899999987632
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
..||+|++|++...... . .....+..+.++| ||.+++.+-.......+...+..
T Consensus 111 ~~~D~v~~~~p~~~~~~---~------~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~ 164 (207)
T 1wy7_A 111 SRVDIVIMNPPFGSQRK---H------ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWE 164 (207)
T ss_dssp CCCSEEEECCCCSSSST---T------TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCccccC---C------chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHH
Confidence 46899999987543221 0 0123455667777 66665532232223334444443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-08 Score=106.77 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..+++. + ...|+|||++++. .+ +++.++++|+.+.. +.
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--- 128 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH--------LP--- 128 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--------CS---
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc--------CC---
Confidence 356889999999999999999886 3 4599999999742 22 57899999998743 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.+.||+|++++.+.. ..+. ..+..+|..+.++|+|||.|+
T Consensus 129 ~~~~D~Ivs~~~~~~-l~~~-------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYF-LLFE-------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTT-BTTT-------CHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhh-ccCH-------HHHHHHHHHHHhhcCCCcEEE
Confidence 257899999863221 1111 112356777889999999998
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.8e-08 Score=101.04 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||||||+|.++..++.. +..|+|||+++. . ...+ .++++|+.+.+ +. .+.||+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~--------~~---~~~fD~ 117 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLP--------FP---SGAFEA 117 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCC--------SC---TTCEEE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCC--------CC---CCCEEE
Confidence 47889999999999999999876 468999999972 1 1112 27888987743 11 267899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
|++.... .++..+ ...+|..+.++|+|||.|++.++.
T Consensus 118 v~~~~~~---~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 118 VLALGDV---LSYVEN-------KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp EEECSSH---HHHCSC-------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EEEcchh---hhcccc-------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9986421 011111 346788899999999999987654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-08 Score=100.28 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHH-----
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKV----- 103 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~----- 103 (832)
.++.+|||||||+|.++..++..++.++.|+|||+++.. .+. ++.++++|+.... ..+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~~~~~~~~ 136 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL--QVLIDSKSAPS 136 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH--HHHHHCSSCCG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHH--HHHHhhccccc
Confidence 467899999999999999999998767899999999721 233 3888899876421 001000
Q ss_pred -HhhccC--CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 104 -MEEHGV--RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 104 -L~~~~~--~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...... +.||+|++++. ... ....+..+.++|+|||+|++..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~--------~~~------~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDAD--------KEN------YPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSC--------GGG------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCC--------HHH------HHHHHHHHHHHcCCCeEEEEEc
Confidence 000001 46899999853 111 1245678889999999999853
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=101.66 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
..+.+|||||||+|+++..++.+.+ ...|++||+++.. + .+++.++++|+... +.
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~---------l~ 188 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF---------LK 188 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH---------HH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH---------HH
Confidence 4568999999999999999988744 5799999999621 1 25789999997642 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccc
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEK 178 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~ 178 (832)
....+.||+|++|+....+. .... .....+..+.++|+|||+|++..-... . +..++..++..|..
T Consensus 189 ~~~~~~fDlIi~d~~~p~~~---~~~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 258 (334)
T 1xj5_A 189 NAAEGSYDAVIVDSSDPIGP---AKEL----FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG 258 (334)
T ss_dssp TSCTTCEEEEEECCCCTTSG---GGGG----GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred hccCCCccEEEECCCCccCc---chhh----hHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence 11126789999997421111 1111 024567789999999999998532221 1 23445566777874
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=100.95 Aligned_cols=106 Identities=9% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHH----HHhCCCCCEE--EEEeCCC-CC-----------CCCCceEE--EccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVA----VQRVPVGSLV--LGLDLVP-IA-----------PIRGAVSL--EQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~L----a~~~p~~~~V--iGVDLsp-~~-----------~i~~V~~i--~gDIt~~~~~~~ 99 (832)
..++.+|||+|||+|.++..+ +...+ +..| +|||+++ |. .++++.+. ++++.+..
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~---- 124 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ---- 124 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH----
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh----
Confidence 356789999999999876533 33333 4544 9999996 21 23455443 33332110
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.........++||+|++... .+|..|. ..+|+.+.++|+|||+|++.++..
T Consensus 125 -~~~~~~~~~~~fD~V~~~~~----l~~~~d~-------~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 125 -SRMLEKKELQKWDFIHMIQM----LYYVKDI-------PATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp -HHHHTTTCCCCEEEEEEESC----GGGCSCH-------HHHHHHHHHTEEEEEEEEEEEECT
T ss_pred -hhhccccCCCceeEEEEeee----eeecCCH-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 00000011267999999753 2343332 357888999999999999965543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-08 Score=104.09 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CC------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------AP------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
..+.+|||||||+|+++..++.+.+ ...|++||+++. .. .+++.++++|+... +.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~---------l~ 176 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---------LK 176 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---------HH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH---------HH
Confidence 3567999999999999999987644 579999999962 11 25688889987642 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHH-HHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALV-IDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~-~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~ 180 (832)
. ..+.||+|++|+... +... ..|. ...+..+.++|+|||.|++..-... .+..+...+...|..+.
T Consensus 177 ~-~~~~fD~Ii~d~~~~----~~~~----~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~ 247 (314)
T 2b2c_A 177 N-HKNEFDVIITDSSDP----VGPA----ESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVT 247 (314)
T ss_dssp H-CTTCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred h-cCCCceEEEEcCCCC----CCcc----hhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcce
Confidence 1 126789999987411 1111 1111 4677889999999999998642221 13445566777898776
Q ss_pred EecC-CCCCCCCcceeEEEee
Q 003302 181 VDKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~KP-~sSR~~SaEiyvVc~g 200 (832)
++.- ..+.+..--.|++|..
T Consensus 248 ~~~~~iP~~~~g~~g~~~ask 268 (314)
T 2b2c_A 248 YAQSIVSTYPSGSMGYLICAK 268 (314)
T ss_dssp EEEEECTTSGGGEEEEEEEES
T ss_pred EEEEEecCcCCCceEEEEEeC
Confidence 5421 2222211124777754
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=96.59 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHHh
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++++|.+|||+|||+|.++..|+...| .+.|+|||+++- ..+. +|.++++|+... +.
T Consensus 11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~---------l~ 80 (225)
T 3kr9_A 11 SFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA---------FE 80 (225)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG---------CC
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh---------cc
Confidence 4568899999999999999999998754 568999999972 1344 488999998652 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH-Hcccce
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK-QLFEKV 179 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~-~~F~~V 179 (832)
.. ..||+|+..|. || .++...|..+...|+|||+||+.-. .....+...|. .-|.-+
T Consensus 81 ~~--~~~D~IviaG~---Gg----------~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 81 ET--DQVSVITIAGM---GG----------RLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp GG--GCCCEEEEEEE---CH----------HHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEE
T ss_pred cC--cCCCEEEEcCC---Ch----------HHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEE
Confidence 10 25899887542 22 2345567778899999999998544 34556654444 435443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-08 Score=99.82 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc-
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH- 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~- 107 (832)
.++.+|||+|||+|.++..++..++.++.|+|||+++.. .+ .++.++++|+.+. +. .+...
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-----l~-~l~~~~ 144 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT-----LE-QLTQGK 144 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-----HH-HHHTSS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-----HH-HHHhcC
Confidence 357899999999999999999988767899999999721 22 3588889987542 11 12110
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+.||+|++|+.. .. ....+..+.++|+|||+|++.
T Consensus 145 ~~~~fD~V~~d~~~--------~~------~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 145 PLPEFDLIFIDADK--------RN------YPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp SCCCEEEEEECSCG--------GG------HHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCcCEEEECCCH--------HH------HHHHHHHHHHHcCCCeEEEEe
Confidence 01568999998641 11 134567788999999999984
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=105.97 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-C-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-R-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||||||+|+|+..++... ...|+|||+++. +.+ . ++.++++|+.+.. .. +..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~-----~~-~~~- 289 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL-----RT-YRD- 289 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH-----HH-HHH-
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH-----HH-HHh-
Confidence 478899999999999999999862 459999999962 134 4 7889999987632 11 110
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
....||+|++|++....+.... ......+...+..+..+|+|||+|++....
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSS--SCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCCEEEECCCCCCCChhHH--HHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 0157899999975321110000 000112345677889999999999986554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=97.22 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----C--C---------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----A--P---------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~--~---------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
..+.+|||||||+|+++..++.+ + ..|++||+++. . . .+++.++.+|.....
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 35679999999999999988877 4 69999999962 0 1 246788888876521
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~~ 181 (832)
++||+|++|.+. +. ..+..+.++|+|||.|++....+. . +..+...+...|..+..
T Consensus 138 ----~~fD~Ii~d~~d-------p~---------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~ 197 (262)
T 2cmg_A 138 ----KKYDLIFCLQEP-------DI---------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP 197 (262)
T ss_dssp ----CCEEEEEESSCC-------CH---------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred ----hhCCEEEECCCC-------hH---------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE
Confidence 568999999531 11 145678999999999998653332 2 33445556777887766
Q ss_pred ecC-CCCCCCCcceeEEEee
Q 003302 182 DKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~KP-~sSR~~SaEiyvVc~g 200 (832)
+.. ..+ ..--.|++|..
T Consensus 198 ~~~~vP~--~g~~~~~~as~ 215 (262)
T 2cmg_A 198 FVAPLRI--LSNKGYIYASF 215 (262)
T ss_dssp ECCTTCT--TCCEEEEEEES
T ss_pred EEEccCC--CcccEEEEeeC
Confidence 432 222 22334666653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=98.05 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=75.7
Q ss_pred hhhhhcCC-CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCC-CceEEEccCCChhHHHH
Q 003302 32 QLDSKFSF-LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIR-GAVSLEQDITKPECRAR 99 (832)
Q Consensus 32 qi~~kf~f-l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~-~V~~i~gDIt~~~~~~~ 99 (832)
.+...+.+ +.++.+|||+|||+|.++..++...| +..|+|+|++.+. .+. +|.++++|+.+..
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 228 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD---- 228 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSC----
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 34444553 36778999999999999999999886 5799999998421 122 5899999998742
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+. ..||+|++..... .|..+ .+..+|+.+.++|+|||++++..+
T Consensus 229 ----~~----~~~D~v~~~~~l~---~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 229 ----YG----NDYDLVLLPNFLH---HFDVA------TCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp ----CC----SCEEEEEEESCGG---GSCHH------HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----CC----CCCcEEEEcchhc---cCCHH------HHHHHHHHHHHhCCCCcEEEEEee
Confidence 11 3489999964321 12111 234678889999999999887544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=95.51 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++... +.|+|||+++-. ...++.++++|+..... .. +
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--------~~---~ 133 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE--------EE---K 133 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG--------GG---C
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc--------cC---C
Confidence 4678899999999999999999874 699999999621 11278899999875210 11 6
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.||+|++++... +.. ..+.++|+|||+|++.+.
T Consensus 134 ~fD~v~~~~~~~----~~~-------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 134 PYDRVVVWATAP----TLL-------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CEEEEEESSBBS----SCC-------------HHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHH----HHH-------------HHHHHHcCCCcEEEEEEc
Confidence 789999986432 111 136789999999998653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-08 Score=99.42 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCC-----CCEEEEEeCCCCC-----------C-----CCCceEEEccCCChhHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPV-----GSLVLGLDLVPIA-----------P-----IRGAVSLEQDITKPECRA 98 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~-----~~~ViGVDLsp~~-----------~-----i~~V~~i~gDIt~~~~~~ 98 (832)
+.++.+|||+|||+|.++..++..++. .+.|+|||+++.. . .+++.++++|+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--- 158 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY--- 158 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC---
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC---
Confidence 578899999999999999999987642 3599999999721 1 457899999987521
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.. .+.||+|+++++.. +. +..+.++|+|||+|++.+..
T Consensus 159 ------~~--~~~fD~I~~~~~~~----~~-------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 159 ------PP--NAPYNAIHVGAAAP----DT-------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp ------GG--GCSEEEEEECSCBS----SC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred ------Cc--CCCccEEEECCchH----HH-------------HHHHHHHhcCCCEEEEEEec
Confidence 11 15789999987532 11 13567899999999997754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=105.70 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCC-CceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIR-GAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+|.+|||||||+|.++..+++. + ..+|+|||.++|. .+. .|+++++|+++.. ++ .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--------lp----e 148 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE--------LP----E 148 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC--------CS----S
T ss_pred CCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec--------CC----c
Confidence 5889999999999999887765 2 3589999999863 233 4889999998753 11 6
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.||+|+|...- ....+. .++..++....++|+|||.++
T Consensus 149 ~~DvivsE~~~-~~l~~e-------~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 149 QVDAIVSEWMG-YGLLHE-------SMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CEEEEECCCCB-TTBTTT-------CSHHHHHHHHHHHEEEEEEEE
T ss_pred cccEEEeeccc-cccccc-------chhhhHHHHHHhhCCCCceEC
Confidence 78999997431 111111 012344555678999999987
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-07 Score=103.56 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.. + ...|+|||++++. .+ .+|.++++|+.+.. + .
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------~----~ 114 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS--------L----P 114 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--------C----S
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC--------C----C
Confidence 46889999999999999998875 3 4699999999742 23 46899999998742 1 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|++++... ++..+. ....+..+.++|+|||.|++.
T Consensus 115 ~~~D~Ivs~~~~~---~~~~~~------~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 115 EQVDIIISEPMGY---MLFNER------MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp SCEEEEEECCCBT---TBTTTS------HHHHHHHGGGGEEEEEEEESC
T ss_pred CceeEEEEeCchh---cCChHH------HHHHHHHHHhhcCCCeEEEEe
Confidence 5689999986421 222111 134455678999999999853
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=91.22 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||||||+|.++..++.. + ...|+|||+++.. ..+++.++++|+.+.+ +.||+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~--------------~~~D~ 113 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS--------------GKYDT 113 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC--------------CCEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC--------------CCeeE
Confidence 46789999999999999999876 3 4589999999721 2337999999987631 57899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
|++|++.... ... .....+..+.++| ||.+++ +.+.....+...+..
T Consensus 114 v~~~~p~~~~----~~~-----~~~~~l~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~ 160 (200)
T 1ne2_A 114 WIMNPPFGSV----VKH-----SDRAFIDKAFETS--MWIYSI--GNAKARDFLRREFSA 160 (200)
T ss_dssp EEECCCC----------------CHHHHHHHHHHE--EEEEEE--EEGGGHHHHHHHHHH
T ss_pred EEECCCchhc----cCc-----hhHHHHHHHHHhc--CcEEEE--EcCchHHHHHHHHHH
Confidence 9999864321 111 1124566677777 554443 333334444444444
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-08 Score=96.80 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
++.+|||||||+|.++..++.. +|+|+++. . ...++.++++|+.+.. +. .+.||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~---~~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTAENLP--------LK---DESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBTTBCC--------SC---TTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEcccccCC--------CC---CCCeeEEEE
Confidence 3789999999999998877542 99999972 1 1127889999987643 11 257899999
Q ss_pred CCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 118 Dgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..... +..+ ...+|..+.++|+|||+|++.++..
T Consensus 109 ~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 109 VTTIC----FVDD-------PERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp ESCGG----GSSC-------HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cchHh----hccC-------HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 75421 1111 2356778899999999999976544
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.47 E-value=3e-07 Score=99.85 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=76.8
Q ss_pred hhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHH
Q 003302 32 QLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 32 qi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l 100 (832)
.+...+.+...+.+|||+|||+|.++..++...| +..++++|+..+. .+ .+|.++.+|+.+...
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 243 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN---- 243 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG----
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc----
Confidence 4445555433378999999999999999999887 5799999994331 22 358999999987531
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+ ....||+|++..... .|..+ .+..+|+.+.++|+|||+|++..
T Consensus 244 ---~---~~~~~D~v~~~~vlh---~~~~~------~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 244 ---F---EGGAADVVMLNDCLH---YFDAR------EAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp ---G---TTCCEEEEEEESCGG---GSCHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---c---CCCCccEEEEecccc---cCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 115689999965321 22221 13567889999999999998854
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=96.62 Aligned_cols=104 Identities=14% Similarity=0.270 Sum_probs=75.1
Q ss_pred hhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 33 LDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 33 i~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+...|.-+.++.+|||+|||+|.++..++...| +..++++|+..+ ...++|.++.+|+.++ ++
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p--- 260 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDLPHVIQDAPAFSGVEHLGGDMFDG---------VP--- 260 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTC---------CC---
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEehHHHHHhhhhcCCCEEEecCCCCC---------CC---
Confidence 344454356778999999999999999999986 678999999332 2346899999999862 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.. |+|++.... -.|..+ .+..+|+.+.++|+|||+|++.-+
T Consensus 261 -~~-D~v~~~~vl---h~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 261 -KG-DAIFIKWIC---HDWSDE------HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp -CC-SEEEEESCG---GGBCHH------HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred -CC-CEEEEechh---hcCCHH------HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 12 999986431 123222 234678899999999999988543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-07 Score=103.05 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=68.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------------C------C--CCCceEEEccCC-ChhHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------------A------P--IRGAVSLEQDIT-KPECRA 98 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------------~------~--i~~V~~i~gDIt-~~~~~~ 98 (832)
+.++.+|||||||+|.++..++...+ ...|+|||+++. . . +.+|.++++|.. .....
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~- 317 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV- 317 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH-
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccc-
Confidence 46789999999999999999998765 458999999962 1 2 357888887544 32110
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.. .. +.||+|+++... +..+ ...+|..+.++|+|||.||+.
T Consensus 318 --~~--~~---~~FDvIvvn~~l-----~~~d-------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 318 --AE--LI---PQCDVILVNNFL-----FDED-------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp --HH--HG---GGCSEEEECCTT-----CCHH-------HHHHHHHHHTTCCTTCEEEES
T ss_pred --cc--cc---CCCCEEEEeCcc-----cccc-------HHHHHHHHHHhCCCCeEEEEe
Confidence 00 01 568999987432 1111 234567888999999999983
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=96.97 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++...+ +.|+|||+++. ..+.++.++++|+... +..
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---------~~~-- 155 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG---------FPP-- 155 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---------CGG--
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC---------CCC--
Confidence 46788999999999999999999875 68999999962 1345788999997321 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
...||+|++++.+. +.. ..+.++|+|||+|++.+..
T Consensus 156 ~~~fD~Ii~~~~~~----~~~-------------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 156 KAPYDVIIVTAGAP----KIP-------------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GCCEEEEEECSBBS----SCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHH----HHH-------------HHHHHhcCCCcEEEEEEec
Confidence 14589999986431 111 1457899999999996643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-07 Score=100.82 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..+++. + ...|+|||++++. .+ .+|.++++|+.+.. +. .
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~---~ 103 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH--------LP---F 103 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--------CS---S
T ss_pred cCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc--------CC---C
Confidence 36789999999999999998876 3 4599999999742 22 35889999998743 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
+.||+|+++..... ..+.. .+..++..+.++|+|||.|+
T Consensus 104 ~~~D~Ivs~~~~~~-l~~~~-------~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYF-LLYES-------MMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTT-BSTTC-------CHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhh-cccHH-------HHHHHHHHHHhhcCCCeEEE
Confidence 57899999853111 11111 12345667789999999997
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=94.38 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L 104 (832)
..++++|.+|||+|||+|.++..|+...+ .+.|+|+|+++- ..+. +|.++++|+.+..
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~--------- 85 (230)
T 3lec_A 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF--------- 85 (230)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC---------
T ss_pred HHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---------
Confidence 34678899999999999999999998754 568999999972 1333 4899999987642
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH-HHHHHcccceE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL-YCLKQLFEKVE 180 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll-~~L~~~F~~V~ 180 (832)
.. ...||+|+.-| +|| .++...|..+...|+++|+||+.-.. ....+. |+...-|.-+.
T Consensus 86 ~~--~~~~D~IviaG---mGg----------~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 86 EE--ADNIDTITICG---MGG----------RLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAANDFEIVA 145 (230)
T ss_dssp CG--GGCCCEEEEEE---ECH----------HHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHTTEEEEE
T ss_pred cc--ccccCEEEEeC---Cch----------HHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHCCCEEEE
Confidence 11 02589987643 222 23455667778899999999986543 345554 44444465443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-07 Score=95.62 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=80.2
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~gDIt~~~~~~~l~~~L 104 (832)
..++.+|.+|||+|||+|.++..|+...+ .+.|+|+|+++- ..+. .|.++++|+....
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~--------- 85 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI--------- 85 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC---------
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc---------
Confidence 34678899999999999999999998754 568999999972 1343 4889999987632
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH-HHHHHcccc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL-YCLKQLFEK 178 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll-~~L~~~F~~ 178 (832)
... ..||+|+.-| +|| .++...|..+...|+++|+||+.-.. ....+. |+...-|.-
T Consensus 86 ~~~--~~~D~Iviag---mGg----------~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 86 EKK--DAIDTIVIAG---MGG----------TLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQNNWLI 143 (244)
T ss_dssp CGG--GCCCEEEEEE---ECH----------HHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHHTEEE
T ss_pred Ccc--ccccEEEEeC---Cch----------HHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHCCCEE
Confidence 110 2489988643 222 23456677788999999999985432 445555 444444653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=95.48 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++...| +..++|+|+ + +. .+ .+|.++++|+.+. +.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~-- 246 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---------LP-- 246 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---------CS--
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---------CC--
Confidence 35678999999999999999999886 679999999 6 21 23 3699999999762 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..||+|++..... .|... .+..+|+.+.++|+|||+|++..+
T Consensus 247 --~~~D~v~~~~vl~---~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 --VTADVVLLSFVLL---NWSDE------DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp --CCEEEEEEESCGG---GSCHH------HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --CCCCEEEEecccc---CCCHH------HHHHHHHHHHHhcCCCcEEEEEec
Confidence 2389999975321 12211 124678889999999999988555
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-08 Score=111.36 Aligned_cols=153 Identities=11% Similarity=0.011 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCC--ceEEEccCCChhHHHHHHHHHh-h
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRG--AVSLEQDITKPECRARVKKVME-E 106 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~--V~~i~gDIt~~~~~~~l~~~L~-~ 106 (832)
.+|.+|||||||+|+++..++..++....|++||+++. +.+.+ +.++++|+... +. .
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~---------l~~~ 121 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF---------LRKE 121 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH---------HHSC
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH---------HHHh
Confidence 36789999999999999999987643368999999962 23444 88888887542 21 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH--HHHHHHHHHcccceEEecC
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY--SSVLYCLKQLFEKVEVDKP 184 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~--~~ll~~L~~~F~~V~~~KP 184 (832)
. ...||+|++|+ + +.. ...+..|..+|+|||+|++...+.... ......++.|-..+..++.
T Consensus 122 ~-~~~fD~V~lDP-~--g~~------------~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~ 185 (392)
T 3axs_A 122 W-GFGFDYVDLDP-F--GTP------------VPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPLRNEF 185 (392)
T ss_dssp C-SSCEEEEEECC-S--SCC------------HHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTT
T ss_pred h-CCCCcEEEECC-C--cCH------------HHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCccccccc
Confidence 1 25789999997 2 110 124556788899999888754221100 1334556665444332221
Q ss_pred CCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 185 AASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 185 ~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
.+ +.+-+.++....+...+.+..+.+|++++...
T Consensus 186 ~~---e~~~r~~L~~~~~~a~~~~~~i~P~l~~~~~~ 219 (392)
T 3axs_A 186 KH---EVGIRILIKKVIELAAQYDIAMIPIFAYSHLH 219 (392)
T ss_dssp HH---HHHHHHHHHHHHHHHHTTTEEEEEEEEEEETT
T ss_pred cc---chhHHHHHHHHHHhcccCCCeEEeeEEEEeCc
Confidence 11 33445566666663344578888888777553
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.6e-07 Score=96.65 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=69.5
Q ss_pred CCEEEEEcCCc---CHHHHHHHHhCCCCCEEEEEeCCCC-C--------C--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAP---GGWMQVAVQRVPVGSLVLGLDLVPI-A--------P--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGP---Gg~sq~La~~~p~~~~ViGVDLsp~-~--------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
...|||||||+ |...+++....| .+.|+|||.+|. . . ..++.++++|++++... +......
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P-~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~--l~~~~~~-- 153 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAP-ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI--LDAPELR-- 153 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCT-TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH--HTCHHHH--
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh--hcccccc--
Confidence 36899999996 444555555555 789999999982 1 1 12489999999996421 0000001
Q ss_pred CCccc-----EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 109 VRAFD-----LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 109 ~~~FD-----lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+.|| .|++++. .+|..++.. ...+|..+.+.|+|||+|++..+...
T Consensus 154 -~~~D~~~p~av~~~av----LH~l~d~~~----p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 154 -DTLDLTRPVALTVIAI----VHFVLDEDD----AVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp -TTCCTTSCCEEEEESC----GGGSCGGGC----HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred -cccCcCCcchHHhhhh----HhcCCchhh----HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 2344 5777654 346555422 13567788999999999999877654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=7.9e-07 Score=96.98 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++.+|||+|||+|.++..++...| +..|+|+|+ + + ...++|.++++|+.+. + ..||+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~---------~-----p~~D~ 249 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS---------I-----PNADA 249 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC---------C-----CCCSE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccCCCcEEEeccccCC---------C-----CCccE
Confidence 45678999999999999999999886 569999999 5 2 2346799999999752 1 23799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhccc---CcEEEEEEc
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAP---KGTFVTKVF 160 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lkp---GG~fV~KVF 160 (832)
|++..... +|. +. .+..+|+.+.++|+| ||+|++..+
T Consensus 250 v~~~~~lh---~~~-d~-----~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 250 VLLKYILH---NWT-DK-----DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEESCGG---GSC-HH-----HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EEeehhhc---cCC-HH-----HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 99875321 222 21 134678899999999 999988543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.7e-07 Score=97.52 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCC-hhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITK-PECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~-~~~~~~l~~~L~~~~ 108 (832)
.++.+||||| |+|.++..++...+ .+.|+|||+++ +. .+.+|.++++|+.. ++ ...
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~----------~~~ 238 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLP----------DYA 238 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCC----------TTT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhch----------hhc
Confidence 3578999999 99999999987743 46999999996 21 23479999999987 22 000
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE-EEEEcC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF-VTKVFR 161 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f-V~KVFr 161 (832)
.+.||+|++|++.. .+ . ...++..+.++|+|||.+ ++.+..
T Consensus 239 ~~~fD~Vi~~~p~~---~~--------~-~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 239 LHKFDTFITDPPET---LE--------A-IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp SSCBSEEEECCCSS---HH--------H-HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred cCCccEEEECCCCc---hH--------H-HHHHHHHHHHHcccCCeEEEEEEec
Confidence 15789999997422 11 1 256778899999999954 554544
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-07 Score=98.66 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=74.1
Q ss_pred hhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-CCCceEEEccCCChhHHHHHHHH
Q 003302 33 LDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 33 i~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
+...|. +.++.+|||+|||+|.++..++...| +..++++|+.++. . .++|.++++|+.++.
T Consensus 176 ~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 245 (348)
T 3lst_A 176 LARAGD-FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV-------- 245 (348)
T ss_dssp HHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC--------
T ss_pred HHHhCC-ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCC--------
Confidence 334444 46678999999999999999999887 6789999996421 1 135899999997421
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..||+|++..... .|... .+..+|+.+.++|+|||+|++..+
T Consensus 246 ------p~~D~v~~~~vlh---~~~d~------~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 246 ------PHADVHVLKRILH---NWGDE------DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp ------CCCSEEEEESCGG---GSCHH------HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred ------CCCcEEEEehhcc---CCCHH------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2679999875321 12221 134678899999999999988543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=94.99 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=74.9
Q ss_pred hhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 33 LDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 33 i~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+...|.-+.++.+|||+|||+|.++..++...| +..++++|+..+ ...++|.++.+|+.++ ++ .
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~p--~ 259 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDLPHVISEAPQFPGVTHVGGDMFKE---------VP--S 259 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTC---------CC--C
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecCHHHHHhhhhcCCeEEEeCCcCCC---------CC--C
Confidence 444454356778999999999999999999887 678999999432 2346899999999862 11 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+ |+|++.... -.|..+ -+..+|+.+.++|+|||+|++.-
T Consensus 260 -~--D~v~~~~vl---h~~~d~------~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 260 -G--DTILMKWIL---HDWSDQ------HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -C--SEEEEESCG---GGSCHH------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -C--CEEEehHHh---ccCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 2 999986431 123222 23567889999999999998853
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=95.09 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=73.5
Q ss_pred hhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCC-CceEEEccCCChhHHHHHHH
Q 003302 35 SKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIR-GAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 35 ~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~-~V~~i~gDIt~~~~~~~l~~ 102 (832)
..+. +.++.+|||+|||+|.++..++...| +..|+|+|+ + +. .++ +|.++++|+.+..
T Consensus 184 ~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 253 (359)
T 1x19_A 184 EEAK-LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES------- 253 (359)
T ss_dssp HHCC-CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-------
T ss_pred HhcC-CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-------
Confidence 3444 46778999999999999999999976 679999999 6 31 234 4999999998742
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...+|+|++..... .|.. ..+..+|+.+.++|+|||+|++..+
T Consensus 254 ------~~~~D~v~~~~vlh---~~~d------~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 254 ------YPEADAVLFCRILY---SANE------QLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp ------CCCCSEEEEESCGG---GSCH------HHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ------CCCCCEEEEechhc---cCCH------HHHHHHHHHHHHhcCCCCEEEEEec
Confidence 12349999864321 1221 1235678899999999999977543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=4e-07 Score=109.07 Aligned_cols=97 Identities=12% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
++.+|||||||+|.++..|+...++...|+|||+++. . .++++.++++|+++...
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~-------- 792 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS-------- 792 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT--------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc--------
Confidence 6889999999999999999988654579999999962 1 23579999999988542
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .+.||+|++.... .|..+. ....++..+.++|+|| +|++.+
T Consensus 793 ~---d~sFDlVV~~eVL----eHL~dp-----~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 793 R---LHDVDIGTCLEVI----EHMEED-----QACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp T---SCSCCEEEEESCG----GGSCHH-----HHHHHHHHHHHTTCCS-EEEEEE
T ss_pred c---cCCeeEEEEeCch----hhCChH-----HHHHHHHHHHHHcCCC-EEEEEe
Confidence 1 2678999997542 122221 1235677899999999 666644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=92.42 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=73.2
Q ss_pred hhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC-----------CCCceEEEccCCChhHHHHHH
Q 003302 34 DSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP-----------IRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 34 ~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~-----------i~~V~~i~gDIt~~~~~~~l~ 101 (832)
...+.+ .+ .+|||+|||+|.++..++...| +..|+|+|+ + +.. ..+|.++++|+.++.
T Consensus 161 ~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 230 (334)
T 2ip2_A 161 PRLLDF-RG-RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV------ 230 (334)
T ss_dssp HHHSCC-TT-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC------
T ss_pred HHhCCC-CC-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC------
Confidence 334443 44 8999999999999999999886 569999999 6 321 146899999997621
Q ss_pred HHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 102 KVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+ ..||+|++.... -.|..+ .+..+|+.+.++|+|||+|++..+
T Consensus 231 ------~-~~~D~v~~~~vl---~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 231 ------P-SNGDIYLLSRII---GDLDEA------ASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp ------C-SSCSEEEEESCG---GGCCHH------HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ------C-CCCCEEEEchhc---cCCCHH------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1 458999986432 123222 134678899999999999998543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.6e-07 Score=98.28 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
....+|||+|||+|.++..++...| +..|+|+|+..+. .+ ++|.++.+|+.+... ..+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~p- 246 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDV---------PFP- 246 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC---------CCC-
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCC---------CCC-
Confidence 4568999999999999999999886 5799999993221 12 368999999987310 001
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|++.... -.|..+ .+..+|+.+.++|+|||+|++.-
T Consensus 247 ~~~D~v~~~~vl---h~~~~~------~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 247 TGFDAVWMSQFL---DCFSEE------EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp CCCSEEEEESCS---TTSCHH------HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCcCEEEEechh---hhCCHH------HHHHHHHHHHHhcCCCcEEEEEe
Confidence 568999987532 123322 13467889999999999998843
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-07 Score=102.53 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.++.+|||+|||+|.++..++.. +..|+|||+++. . ...++......+.. .....+. +.. ++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~l~--~~~---~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRVRTDFFEK-ATADDVR--RTE---GPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCEECSCCSH-HHHHHHH--HHH---CCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCcceeeech-hhHhhcc--cCC---CCEEEE
Confidence 467889999999999999999886 459999999972 1 11133333322211 1111111 222 678999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
++..... |..+ ...+|+.+.++|+|||+|++.+
T Consensus 176 ~~~~vl~----h~~d-------~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 176 YAANTLC----HIPY-------VQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp EEESCGG----GCTT-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECChHH----hcCC-------HHHHHHHHHHHcCCCeEEEEEe
Confidence 9985421 2222 3467888999999999999854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-07 Score=105.04 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.. + ...|+|||++++. .+ .+|.++++|+.+.. + .
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--------~----~ 222 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS--------L----P 222 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC--------C----S
T ss_pred cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc--------c----C
Confidence 46789999999999999988874 3 4699999999731 23 46899999998742 1 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|++++... ++..+ .....+..+.++|+|||.|++
T Consensus 223 ~~fD~Ivs~~~~~---~~~~e------~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 223 EQVDIIISEPMGY---MLFNE------RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp SCEEEEECCCCHH---HHTCH------HHHHHHHHGGGGEEEEEEEES
T ss_pred CCeEEEEEeCchH---hcCcH------HHHHHHHHHHHhcCCCCEEEE
Confidence 5789999975311 11111 123455577899999999985
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=89.31 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=68.9
Q ss_pred HHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeC-CC-CC---------------CC-----CCc
Q 003302 27 SWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDL-VP-IA---------------PI-----RGA 84 (832)
Q Consensus 27 afKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDL-sp-~~---------------~i-----~~V 84 (832)
+..|.+....+.-+.++.+|||||||+|.++..++.. + .+.|+|||+ ++ +. .+ .+|
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v 141 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP 141 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence 4445544333322346789999999999999988875 3 359999999 65 10 11 257
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc---c--CcEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA---P--KGTFVT 157 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk---p--GG~fV~ 157 (832)
.++..|+.+... .+...+. .+.||+|++...+. +..+ ...++..+.++|+ | ||.+++
T Consensus 142 ~~~~~~~~~~~~--~~~~~~~---~~~fD~Ii~~dvl~----~~~~-------~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 142 KVVPYRWGDSPD--SLQRCTG---LQRFQVVLLADLLS----FHQA-------HDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp EEEECCTTSCTH--HHHHHHS---CSSBSEEEEESCCS----CGGG-------HHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EEEEecCCCccH--HHHhhcc---CCCCCEEEEeCccc----ChHH-------HHHHHHHHHHHhcccCCCCCCEEEE
Confidence 777666655211 1111111 26789999832211 1111 2345677889999 9 998776
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=93.82 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=74.1
Q ss_pred hhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHH
Q 003302 33 LDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 33 i~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l 100 (832)
+...|. +.++.+|||+|||+|.++..++...| +..++++|+ + +. .+ ++|.++.+|+.++.
T Consensus 161 ~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 232 (332)
T 3i53_A 161 IAAKYD-WAALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL----- 232 (332)
T ss_dssp GGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----
T ss_pred HHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-----
Confidence 333443 35568999999999999999999887 579999999 5 21 22 56999999997421
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+ ..||+|++.... -.|..+ .+..+|+.+.++|+|||+|++..+
T Consensus 233 -------p-~~~D~v~~~~vl---h~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 233 -------P-AGAGGYVLSAVL---HDWDDL------SAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp -------C-CSCSEEEEESCG---GGSCHH------HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred -------C-CCCcEEEEehhh---ccCCHH------HHHHHHHHHHHhcCCCCEEEEEee
Confidence 1 267999996432 112221 235678899999999999998543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-07 Score=99.68 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
..++.+|||+|||+|+++..++...+ .+.|+|+|+++.. .+ .++.++++|+.+...
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~----------- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ----------- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG-----------
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc-----------
Confidence 46788999999999999999988754 4589999999721 23 468999999987531
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+.||+|++|++... ..........+...++..+.++| ||++++
T Consensus 283 ~~~~fD~Ii~npPyg~---r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~ 327 (373)
T 3tm4_A 283 YVDSVDFAISNLPYGL---KIGKKSMIPDLYMKFFNELAKVL--EKRGVF 327 (373)
T ss_dssp TCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHHHE--EEEEEE
T ss_pred ccCCcCEEEECCCCCc---ccCcchhHHHHHHHHHHHHHHHc--CCeEEE
Confidence 1267899999986432 11111111233456677788888 666665
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=93.96 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++...| ...++++|+ + +. .+ .+|.++++|+.+. +.
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~-- 247 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---------LP-- 247 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---------CS--
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---------CC--
Confidence 35678999999999999999999876 579999998 5 21 13 2699999999762 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|++..... .|. + ..+..+|+.+.++|+|||+|++..+.
T Consensus 248 --~~~D~v~~~~vl~---~~~-~-----~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 248 --RKADAIILSFVLL---NWP-D-----HDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp --SCEEEEEEESCGG---GSC-H-----HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --CCccEEEEccccc---CCC-H-----HHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 3489999875321 121 1 11346788899999999999986543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.4e-07 Score=101.92 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC------------CCCEEEEEeCCCC-----------CCCC--CceEEEccCCChh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVP------------VGSLVLGLDLVPI-----------APIR--GAVSLEQDITKPE 95 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p------------~~~~ViGVDLsp~-----------~~i~--~V~~i~gDIt~~~ 95 (832)
.++.+|||.|||+|+++..++.++. ....|+|+|+++. ..+. ++.++++|.....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 4678999999999999998887641 1357999999962 1232 5678899987632
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhH-H-----hH--HhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE-A-----MS--QNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D-~-----~~--q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. ...||+|++|++... .|..+ . +. ........+..++++|+|||++++-+
T Consensus 250 ~------------~~~fD~Iv~NPPf~~--~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 250 P------------STLVDVILANPPFGT--RPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp C------------SSCEEEEEECCCSSC--CCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c------------cCCcCEEEECCCCCC--cccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 1 147899999986442 22111 0 00 00112345677889999999998855
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-06 Score=93.21 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.++.+|||+|||+|.++..++...| +..++++|+..+ ...++|.++++|+.++ + ..||+|
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~-----~~~D~v 255 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQPQVVGNLTGNENLNFVGGDMFKS---------I-----PSADAV 255 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECHHHHSSCCCCSSEEEEECCTTTC---------C-----CCCSEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEeccHHHHhhcccCCCcEEEeCccCCC---------C-----CCceEE
Confidence 34668999999999999999999986 578999999533 1346799999999762 1 247999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhccc---CcEEEEEEc
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAP---KGTFVTKVF 160 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lkp---GG~fV~KVF 160 (832)
++..... .|. +. .+..+|+.+.++|+| ||+|++..+
T Consensus 256 ~~~~vlh---~~~-d~-----~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 256 LLKWVLH---DWN-DE-----QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp EEESCGG---GSC-HH-----HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred EEccccc---CCC-HH-----HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 9874321 122 21 234678899999999 999988543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-08 Score=101.90 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=67.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC--------CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP--------IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~--------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++... +.|+|||+++ +.. .+++.++++|+.+... .. .+
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~--------~~--~~ 93 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF--------PN--KQ 93 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC--------CC--SS
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCc--------cc--CC
Confidence 3578899999999999999999883 6999999997 221 2468889999987431 10 15
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHH----HHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSV----KLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aL----k~A~~~LkpGG~fV~ 157 (832)
.| +|++|++.+...........+.......+ ..+.++|+|||.|++
T Consensus 94 ~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 94 RY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred Cc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 68 88898765443210000000000001122 558899999998765
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.8e-06 Score=90.46 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCcCH----HHHHHHHhCCC---CCEEEEEeCCCC-C-----C---------C------------------
Q 003302 42 SSHAVLDLCAAPGG----WMQVAVQRVPV---GSLVLGLDLVPI-A-----P---------I------------------ 81 (832)
Q Consensus 42 ~g~~VLDLGcGPGg----~sq~La~~~p~---~~~ViGVDLsp~-~-----~---------i------------------ 81 (832)
++.+|+|+|||+|. ++..++..++. +..|+|+|+++- . . +
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35689999999998 55666666442 358999999951 0 0 0
Q ss_pred ---------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC
Q 003302 82 ---------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK 152 (832)
Q Consensus 82 ---------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG 152 (832)
..|.|.++|+.+++. . ..+.||+|+|.. +- .+. +. .....++..+.+.|+||
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~--------~--~~~~fDlI~crn---vl-iyf-~~----~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQY--------N--VPGPFDAIFCRN---VM-IYF-DK----TTQEDILRRFVPLLKPD 245 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSC--------C--CCCCEEEEEECS---SG-GGS-CH----HHHHHHHHHHGGGEEEE
T ss_pred ceeechhhcccCeEEecccCCCCC--------C--cCCCeeEEEECC---ch-HhC-CH----HHHHHHHHHHHHHhCCC
Confidence 147888899887321 0 026799999953 21 111 11 23467888999999999
Q ss_pred cEEEE
Q 003302 153 GTFVT 157 (832)
Q Consensus 153 G~fV~ 157 (832)
|+|++
T Consensus 246 G~L~l 250 (274)
T 1af7_A 246 GLLFA 250 (274)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99987
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=93.82 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++.. ++.|+|||+++ +. .. +++.++++|+....
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~------------ 90 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD------------ 90 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC------------
T ss_pred CCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc------------
Confidence 357889999999999999999987 35899999996 21 12 46899999998642
Q ss_pred cCCcccEEEeCCCCC
Q 003302 108 GVRAFDLVLHDGSPN 122 (832)
Q Consensus 108 ~~~~FDlVlsDgapn 122 (832)
...||+|++|.+.+
T Consensus 91 -~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 91 -LPFFDTCVANLPYQ 104 (285)
T ss_dssp -CCCCSEEEEECCGG
T ss_pred -chhhcEEEEecCcc
Confidence 14679999987643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-06 Score=93.06 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=74.0
Q ss_pred hhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------C-CCCceEEEccCCChhHHHHH
Q 003302 33 LDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------P-IRGAVSLEQDITKPECRARV 100 (832)
Q Consensus 33 i~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~-i~~V~~i~gDIt~~~~~~~l 100 (832)
+...|. +.++.+|||+|||+|.++..++...| +..++++|+ + +. . ..+|.++.+|+.++.
T Consensus 194 l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 265 (369)
T 3gwz_A 194 VAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI----- 265 (369)
T ss_dssp HHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC-----
T ss_pred HHHhCC-CccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC-----
Confidence 344454 35678999999999999999999876 679999999 5 21 1 246999999998421
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+ ..||+|++..... .|..+ .+..+|+.+.++|+|||+|++..
T Consensus 266 -------p-~~~D~v~~~~vlh---~~~d~------~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 266 -------P-DGADVYLIKHVLH---DWDDD------DVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp -------C-SSCSEEEEESCGG---GSCHH------HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred -------C-CCceEEEhhhhhc---cCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 2679999875321 12221 23467889999999999999854
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-07 Score=93.47 Aligned_cols=92 Identities=7% Similarity=-0.054 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+..+|||||||+|.++..++...| ...|+|+|+++ |. ... ++.+ +|.... .
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---------~--- 111 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---------V--- 111 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---------H---
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---------C---
Confidence 57788999999999999999988766 55999999997 21 122 2333 444321 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..++||+|++.-. .+..+. ...++..++..|+|||.||.
T Consensus 112 ~~~~~DvVLa~k~-----LHlL~~------~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 112 YKGTYDVVFLLKM-----LPVLKQ------QDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp TTSEEEEEEEETC-----HHHHHH------TTCCHHHHHHTCEEEEEEEE
T ss_pred CCCCcChhhHhhH-----HHhhhh------hHHHHHHHHHHhCCCCEEEE
Confidence 2278899998521 111111 12344578899999999996
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-06 Score=96.21 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------C---------------CCCCceEEEccCCChh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------A---------------PIRGAVSLEQDITKPE 95 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~---------------~i~~V~~i~gDIt~~~ 95 (832)
++.+|||||||+|+++..++..++ ...|++||+++- + .+.++.++++|+....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 578999999999999999999876 458999999962 1 2334778888876531
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
... ...||+|+.|+. . .. ...+..|.+.|+|||.+++.
T Consensus 126 ---------~~~-~~~fD~I~lDP~-~--~~------------~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 126 ---------AER-HRYFHFIDLDPF-G--SP------------MEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp ---------HHS-TTCEEEEEECCS-S--CC------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------Hhc-cCCCCEEEeCCC-C--CH------------HHHHHHHHHhcCCCCEEEEE
Confidence 111 156899999973 1 10 13455678899999988764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-06 Score=95.13 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc---
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG--- 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~--- 108 (832)
+.+|||||||+|.++..++.. ...|+|||+++- +.+.++.++++|+.+.. ..+....
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~------~~~~~~~~~~ 284 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT------QAMNGVREFN 284 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH------HHHSSCCCCT
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH------HHHhhccccc
Confidence 578999999999999999875 358999999972 23567999999986531 1111100
Q ss_pred --------CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 --------VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 --------~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
...||+|++|++.. |. ...+.++|++||.+|+....+
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~--g~---------------~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRS--GL---------------DSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTT--CC---------------CHHHHHHHTTSSEEEEEESCH
T ss_pred cccccccccCCCCEEEECcCcc--cc---------------HHHHHHHHhCCCEEEEEECCH
Confidence 02689999997521 21 113456677999998854443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-06 Score=90.40 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=73.5
Q ss_pred hhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHH
Q 003302 34 DSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 34 ~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
...|. +.+..+|||+|||+|.++..+++..| +..++.+|+..+. ...+|.++.+|+.+.+
T Consensus 172 ~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-------- 241 (353)
T 4a6d_A 172 LTAFD-LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-------- 241 (353)
T ss_dssp HHSSC-GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSC--------
T ss_pred HHhcC-cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCC--------
Confidence 33444 45667999999999999999999987 6789999985321 2357999999997642
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...+|+|++.... -.|..+ -+..+|+.+.+.|+|||+|++.-
T Consensus 242 -----~~~~D~~~~~~vl---h~~~d~------~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 242 -----LPEADLYILARVL---HDWADG------KCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp -----CCCCSEEEEESSG---GGSCHH------HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -----CCCceEEEeeeec---ccCCHH------HHHHHHHHHHhhCCCCCEEEEEE
Confidence 1345999985321 123322 24567899999999999998843
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=93.63 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC-----------------CCEEEEEeCCCC-----------CCCCC-----ceEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV-----------------GSLVLGLDLVPI-----------APIRG-----AVSL 87 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~-----------------~~~ViGVDLsp~-----------~~i~~-----V~~i 87 (832)
.++.+|||.|||+|+|+..++.++.. ...|+|+|+++. ..+.+ +.++
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 46789999999999999888876532 136999999962 12333 6778
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhH---Hh--HHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE---AM--SQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D---~~--~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
++|...... . ....||+|++||++.. .|..+ .+ .........+..++++|+|||++++-+
T Consensus 248 ~gDtL~~~~-------~---~~~~fD~Vv~NPPf~~--~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDG-------E---NLPKAHIVATNPPFGS--AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp ESCTTSHHH-------H---TSCCEEEEEECCCCTT--CSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCccccc-------c---cccCCeEEEECCCccc--ccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 999776421 1 1267899999986543 22110 00 000111245677889999999998854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-06 Score=91.00 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++.. ++.|+|||+++- ..++++.++++|+....
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~------------- 103 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV------------- 103 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-------------
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC-------------
Confidence 357889999999999999999876 469999999962 13467899999998742
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
...||+|++|.+.
T Consensus 104 ~~~~D~Vv~n~py 116 (299)
T 2h1r_A 104 FPKFDVCTANIPY 116 (299)
T ss_dssp CCCCSEEEEECCG
T ss_pred cccCCEEEEcCCc
Confidence 1468999999753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-07 Score=93.85 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=43.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C--------CCCCCceEEEccCCCh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I--------APIRGAVSLEQDITKP 94 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~--------~~i~~V~~i~gDIt~~ 94 (832)
+.++.+|||+|||+|.++..++... +.|+|||+++ + ...+++.++++|+...
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF 88 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC
Confidence 3578899999999999999999884 6999999996 2 1236799999999764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=89.87 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++.. .+.|+|||+++. ..+.++.++++|+.+... .+. ..
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~------~~~-~~ 353 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT------KQP-WA 353 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS------SSG-GG
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh------hhh-hh
Confidence 356789999999999999999987 469999999962 235689999999987310 000 11
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
.+.||+|++|++
T Consensus 354 ~~~fD~Vv~dPP 365 (433)
T 1uwv_A 354 KNGFDKVLLDPA 365 (433)
T ss_dssp TTCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 156899999975
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=93.06 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC--CCEEEEEeCCCCC-----------------CCCCceEEEccCCChhHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV--GSLVLGLDLVPIA-----------------PIRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~--~~~ViGVDLsp~~-----------------~i~~V~~i~gDIt~~~~~~~l~ 101 (832)
.++.+|||.|||+|+++..++..++. ...|+|+|+++.. .+....+...|+..+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~------ 393 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN------ 393 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC------
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc------
Confidence 46789999999999999999988751 3579999999731 0111233444554421
Q ss_pred HHHhhccCCcccEEEeCCCCCCCCCchhHH--hHH----------------hHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 102 KVMEEHGVRAFDLVLHDGSPNVGGAWAQEA--MSQ----------------NALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgapnv~g~w~~D~--~~q----------------~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
......||+|++||+......+.... +.. ..+....+..|..+|+|||++++-+
T Consensus 394 ----~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 394 ----PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp ----GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 01126789999998654322222111 000 0123456778999999999999844
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=91.52 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
.++.+|+|.|||+|+++..++.++. ....|+|+|+++.. .+ .++.+.++|...... +
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~--------p 291 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDW--------P 291 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCS--------C
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccc--------c
Confidence 4678999999999999998888863 25689999999731 23 345678898765310 0
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHH-------hHHh-------HHHHHHHHHHHhhcc-cCcEEEEEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEA-------MSQN-------ALVIDSVKLATQFLA-PKGTFVTKV 159 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~-------~~q~-------~L~~~aLk~A~~~Lk-pGG~fV~KV 159 (832)
......||+|++||+.. +.|..+. +... ..-...+..+..+|+ |||++++-+
T Consensus 292 ~~~~~~fD~IvaNPPf~--~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 292 TQEPTNFDGVLMNPPYS--AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp CSSCCCBSEEEECCCTT--CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred ccccccccEEEecCCcC--CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 01126789999998754 3342110 1100 001246778899999 999998744
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-06 Score=96.18 Aligned_cols=101 Identities=20% Similarity=0.123 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||.|.++..|++. ++.|+|||+++.. +..+|.|.++++.++. ..+ .
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~------~~~---~ 131 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI------AAL---E 131 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH------HHC---C
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh------hhc---c
Confidence 356679999999999999999986 6799999999721 2235788888876531 111 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+.||+|+|-... .|..+... +..+ ...+..|+++|..++..+.
T Consensus 132 ~~~fD~v~~~e~~----ehv~~~~~----~~~~-~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 132 EGEFDLAIGLSVF----HHIVHLHG----IDEV-KRLLSRLADVTQAVILELA 175 (569)
T ss_dssp TTSCSEEEEESCH----HHHHHHHC----HHHH-HHHHHHHHHHSSEEEEECC
T ss_pred CCCccEEEECcch----hcCCCHHH----HHHH-HHHHHHhccccceeeEEec
Confidence 2679999997531 23333211 1111 2245567777665543433
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=9.4e-06 Score=87.61 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=56.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|+++..++..+| ++.|+|||+++.. .. .++.++++|+.++.. .+.....
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~------~l~~~g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF------LLKTLGI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH------HHHHTTC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH------HHHhcCC
Confidence 35788999999999999999999987 6799999999721 11 579999999887431 1221112
Q ss_pred CcccEEEeCCC
Q 003302 110 RAFDLVLHDGS 120 (832)
Q Consensus 110 ~~FDlVlsDga 120 (832)
..||.|++|+.
T Consensus 97 ~~~D~Vl~D~g 107 (301)
T 1m6y_A 97 EKVDGILMDLG 107 (301)
T ss_dssp SCEEEEEEECS
T ss_pred CCCCEEEEcCc
Confidence 46899999964
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=88.58 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++.. ...|+|||+++.. .+. +.++++|+.+.. .
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~---------~--- 351 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS---------V--- 351 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC---------C---
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC---------c---
Confidence 467889999999999999999986 4599999999621 244 889999998742 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..||+|++|++. .|.. . .++ .+...|+|||.+++.
T Consensus 352 -~~fD~Vv~dPPr--~g~~--~---------~~~-~~l~~l~p~givyvs 386 (425)
T 2jjq_A 352 -KGFDTVIVDPPR--AGLH--P---------RLV-KRLNREKPGVIVYVS 386 (425)
T ss_dssp -TTCSEEEECCCT--TCSC--H---------HHH-HHHHHHCCSEEEEEE
T ss_pred -cCCCEEEEcCCc--cchH--H---------HHH-HHHHhcCCCcEEEEE
Confidence 257999999752 1211 0 111 122348999998874
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=89.48 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.+|.+|||||||+|+.+.+++.. ++.|+|||+++.. .+.++.++++|+.+.-. .+..
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~------~~~~ 161 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLP------LIKT 161 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHH------HHHH
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhh------hccC
Confidence 445899999999999999998876 4699999999721 23468999999987311 1112
Q ss_pred ccCCcccEEEeCCCCCCC--C-CchhHHhHHhHHHHHHHHHHHh-hcccCcEEEEEEcCCCCHHHHHHH
Q 003302 107 HGVRAFDLVLHDGSPNVG--G-AWAQEAMSQNALVIDSVKLATQ-FLAPKGTFVTKVFRSQDYSSVLYC 171 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~--g-~w~~D~~~q~~L~~~aLk~A~~-~LkpGG~fV~KVFrs~d~~~ll~~ 171 (832)
..||+|++|++...+ + .|..+.... -+..... ++..+..+++|+-+.-++...+..
T Consensus 162 ---~~fDvV~lDPPrr~~~~grv~~led~~P------~l~~~~~~l~~~~~~~~vK~sP~ld~~~~~~~ 221 (410)
T 3ll7_A 162 ---FHPDYIYVDPARRSGADKRVYAIADCEP------DLIPLATELLPFCSSILAKLSPMIDLWDTLQS 221 (410)
T ss_dssp ---HCCSEEEECCEEC-----CCCCGGGEES------CHHHHHHHHGGGSSEEEEEECTTSCHHHHHHH
T ss_pred ---CCceEEEECCCCcCCCCceEEehhhcCC------CHHHHHHHHHhhCCcEEEEcCCCCChHHHHhh
Confidence 467999999853321 1 244433221 1122333 455677888899888787654433
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.6e-05 Score=85.54 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..|+.. +..|+|||+++- . ..+++.++++|+..... .. .
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~--------~~---~ 113 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL--------NK---L 113 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG--------GG---S
T ss_pred CCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc--------cc---C
Confidence 457889999999999999999987 469999999983 2 23689999999987531 11 4
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.||+|++|.+.
T Consensus 114 ~fD~Iv~NlPy 124 (295)
T 3gru_A 114 DFNKVVANLPY 124 (295)
T ss_dssp CCSEEEEECCG
T ss_pred CccEEEEeCcc
Confidence 58999999754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.2e-05 Score=91.20 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=64.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCC--------------CCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHH
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPV--------------GSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRA 98 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~--------------~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~ 98 (832)
+|||.|||+|+|+..++.++.. ...|+|+|+++.. .+. ++.+.++|......
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-- 324 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-- 324 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS--
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc--
Confidence 8999999999998887665421 3589999999721 121 23235677554220
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhH-------------------HhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMS-------------------QNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~-------------------q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.....||+|++||+.+.. .|..+... ........+..+..+|+|||++++-+
T Consensus 325 --------~~~~~fD~Iv~NPPf~~~-~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 325 --------HPDLRADFVMTNPPFNMK-DWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp --------CTTCCEEEEEECCCSSCC-SCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------cccccccEEEECCCcCCc-cccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 112678999999875431 23221100 00011246778899999999988754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.3e-05 Score=82.76 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC-------------------------------------CCCEEEEEeCCCCC----
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVP-------------------------------------VGSLVLGLDLVPIA---- 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p-------------------------------------~~~~ViGVDLsp~~---- 79 (832)
.++..|||+|||+|+++..++.... ....|+|+|+++-.
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 5678999999999999988876532 12579999999721
Q ss_pred -------CCC-CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 80 -------PIR-GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 80 -------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
.+. .+.+.++|+.+... ...||+|++|++.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~------------~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKS------------EDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCC------------SCBSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChhhcCc------------CCCCcEEEECCCC
Confidence 233 58899999887431 1568999999863
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.8e-05 Score=82.43 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC-------------------------------------CCEEEEEeCCCC-----
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV-------------------------------------GSLVLGLDLVPI----- 78 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~-------------------------------------~~~ViGVDLsp~----- 78 (832)
.++..|||+|||+|.++..++..... ...|+|+|+++.
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 56789999999999999887765321 146999999972
Q ss_pred ------CCCC-CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 79 ------APIR-GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 79 ------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
..+. .+.++++|+.+... ...||+|++|++.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~------------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQT------------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCC------------CCCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHhCCC------------CCCCCEEEECCCC
Confidence 1343 48899999987431 1568999999863
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=78.63 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccC-Cc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGV-RA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~-~~ 111 (832)
+.+|.++||.+||.||.+..++..+++.++|+|+|.++.. ...+++++++++.+.. ..+..... +.
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~------~~L~~~g~~~~ 128 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALG------EYVAERDLIGK 128 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHH------HHHHHTTCTTC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHH------HHHHhcCCCCc
Confidence 4689999999999999999999998888999999999721 1246889999988743 22322211 25
Q ss_pred ccEEEeCC
Q 003302 112 FDLVLHDG 119 (832)
Q Consensus 112 FDlVlsDg 119 (832)
||.|+.|.
T Consensus 129 vDgILfDL 136 (347)
T 3tka_A 129 IDGILLDL 136 (347)
T ss_dssp EEEEEEEC
T ss_pred ccEEEECC
Confidence 79999885
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=81.89 Aligned_cols=69 Identities=7% Similarity=-0.018 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC-------------------------------------CCEEEEEeCCCC-----
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV-------------------------------------GSLVLGLDLVPI----- 78 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~-------------------------------------~~~ViGVDLsp~----- 78 (832)
.++..|||+|||+|+++..++..... ...|+|+|+++.
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 56789999999999999887764321 146999999972
Q ss_pred ------CCCC-CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 79 ------APIR-GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 79 ------~~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
..+. .+.++++|+++... ...||+|++|++.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~------------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKT------------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCC------------CCCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHHCCc------------cCCcCEEEECCch
Confidence 1344 38899999987431 1468999999864
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=8.8e-05 Score=78.84 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++ +|||+|||+|.++..++... +.|+|||+++ +. ...++.++++|+..... .. ...
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~--------~~--~~~ 110 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPW--------EE--VPQ 110 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCG--------GG--SCT
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCCh--------hh--ccC
Confidence 3567 99999999999999999873 5899999997 21 22469999999987532 11 125
Q ss_pred ccEEEeCCCCCC
Q 003302 112 FDLVLHDGSPNV 123 (832)
Q Consensus 112 FDlVlsDgapnv 123 (832)
||+|++|.+.+.
T Consensus 111 ~~~iv~NlPy~i 122 (271)
T 3fut_A 111 GSLLVANLPYHI 122 (271)
T ss_dssp TEEEEEEECSSC
T ss_pred ccEEEecCcccc
Confidence 699999986554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00041 Score=74.58 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
....+||=||.|.|+.+..++++.+ ...|+.|||.+.. .-|++.++.+|.... +
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~---------l 151 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF---------V 151 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT---------T
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH---------H
Confidence 4457899999999999998888755 4589999999731 136799999998763 2
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC----CCCHHHHHHHHHHcccceE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR----SQDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr----s~d~~~ll~~L~~~F~~V~ 180 (832)
.. ....||+|+.|..-..+..... + ....+..+.+.|+|||.||+-.-. ...+..++..++..|..|.
T Consensus 152 ~~-~~~~yDvIi~D~~dp~~~~~~L--~-----t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~ 223 (294)
T 3o4f_A 152 NQ-TSQTFDVIISDCTDPIGPGESL--F-----TSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVG 223 (294)
T ss_dssp SC-SSCCEEEEEESCCCCCCTTCCS--S-----CCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEE
T ss_pred hh-ccccCCEEEEeCCCcCCCchhh--c-----CHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCcee
Confidence 22 2268999999974222211110 1 123456788999999999985322 2234455666778898887
Q ss_pred EecC-CCCCCCCcceeEEEeec
Q 003302 181 VDKP-AASRSASAEIYLLGIKY 201 (832)
Q Consensus 181 ~~KP-~sSR~~SaEiyvVc~gf 201 (832)
.+.. +-+-++..-.|++|..-
T Consensus 224 ~~~~~vPty~~g~w~f~~as~~ 245 (294)
T 3o4f_A 224 FYQAAIPTYYGGIMTFAWATDN 245 (294)
T ss_dssp EEEECCTTSSSSCEEEEEEESC
T ss_pred eeeeeeccCCCcceeheeEECC
Confidence 6532 33344555567777643
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.49 E-value=2.5e-05 Score=76.01 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+|.+|||||||+.+ ||+++ |. ...++.++++|+.++.. .....+.|
T Consensus 10 ~~~g~~vL~~~~g~v~-----------------vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~--------~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSP-----------------VEALKGLVDKLQALTGNEGRVSVENIKQLLQ--------SAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTTSC-----------------HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGG--------GCCCSSCE
T ss_pred CCCCCEEEEecCCcee-----------------eeCCHHHHHHHHHhcccCcEEEEechhcCcc--------ccCCCCCE
Confidence 5789999999999743 34433 10 01248889999987531 00012679
Q ss_pred cEEEeCCCCCCCCCch-hHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWA-QEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~-~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|++..... |. .+. ..+|+.+.++|+|||+|++.
T Consensus 65 D~V~~~~~l~----~~~~~~-------~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 65 DIILSGLVPG----STTLHS-------AEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp EEEEECCSTT----CCCCCC-------HHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECChhh----hcccCH-------HHHHHHHHHHCCCCEEEEEE
Confidence 9999975432 22 221 35778899999999999984
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=77.47 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHh-------CCC----CCEEEEEeCCCCC-----------------------C------
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQR-------VPV----GSLVLGLDLVPIA-----------------------P------ 80 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~-------~p~----~~~ViGVDLsp~~-----------------------~------ 80 (832)
.++.+||++|+|+|.-+.+++.. .|. ...|++|+..|+. .
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35578999999999987776554 442 2489999998831 0
Q ss_pred ------C----CCceEEEccCCChhHHHHHHHHHhhcc---CCcccEEEeCCC-CCC-CCCchhHHhHHhHHHHHHHHHH
Q 003302 81 ------I----RGAVSLEQDITKPECRARVKKVMEEHG---VRAFDLVLHDGS-PNV-GGAWAQEAMSQNALVIDSVKLA 145 (832)
Q Consensus 81 ------i----~~V~~i~gDIt~~~~~~~l~~~L~~~~---~~~FDlVlsDga-pnv-~g~w~~D~~~q~~L~~~aLk~A 145 (832)
+ .++..+.+|+.+. +.... ...||+|+.||. |.. ...|.. ..|..+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~---------l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~----------~~l~~l 199 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINEL---------ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQ----------NLFNAM 199 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHH---------GGGSCGGGTTCEEEEEECSSCTTTCGGGCCH----------HHHHHH
T ss_pred chhheeccCCceEEEEEECcHHHH---------HhhcccccCCeEEEEEECCCCcccChhhcCH----------HHHHHH
Confidence 1 1244567776541 22211 136899999973 321 112443 345678
Q ss_pred HhhcccCcEEEEEEcCCCCHHHHHHHHHHc-cc
Q 003302 146 TQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FE 177 (832)
Q Consensus 146 ~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~ 177 (832)
.++|+|||+|++ |... ..+...|... |.
T Consensus 200 ~~~L~pGG~l~t--ysaa--~~vrr~L~~aGF~ 228 (257)
T 2qy6_A 200 ARLARPGGTLAT--FTSA--GFVRRGLQEAGFT 228 (257)
T ss_dssp HHHEEEEEEEEE--SCCB--HHHHHHHHHHTEE
T ss_pred HHHcCCCcEEEE--EeCC--HHHHHHHHHCCCE
Confidence 899999999995 5543 3455555554 65
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0005 Score=79.62 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC------------CCEEEEEeCCCCC-----------CCCCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV------------GSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~------------~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~ 97 (832)
.++.+|+|-|||+|+|...+..++.. ...++|+|+++.. .+....+.++|....+..
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 56789999999999998877765432 2369999999621 233334566776543211
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHH-------hHHHHHHHHHHHhhcc-------cCcEEEEEE
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQ-------NALVIDSVKLATQFLA-------PKGTFVTKV 159 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q-------~~L~~~aLk~A~~~Lk-------pGG~fV~KV 159 (832)
.......||+|++||+++ +.|..+.... .......+..+...|+ |||++++-+
T Consensus 296 -------~~~~~~~fD~Il~NPPf~--~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 296 -------EMGDKDRVDVILTNPPFG--GEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp -------GCCGGGCBSEEEECCCSS--CBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred -------hhcccccceEEEecCCCC--ccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 111125689999998753 3333222110 0011123344555554 799998854
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.44 E-value=5.6e-05 Score=79.86 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCC--CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------C----C-CCceEEEccCCChhHHH
Q 003302 41 RSS--HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------P----I-RGAVSLEQDITKPECRA 98 (832)
Q Consensus 41 ~~g--~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~----i-~~V~~i~gDIt~~~~~~ 98 (832)
.++ .+|||+|||+|..+..++.+ ++.|+|||+++.. . + .++.++++|..+.
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~---- 157 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---- 157 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH----
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH----
Confidence 456 89999999999999999987 4579999999820 1 2 3578889987642
Q ss_pred HHHHHHhhccCCcccEEEeCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.... ..||+|++|++.
T Consensus 158 -----L~~~~-~~fDvV~lDP~y 174 (258)
T 2oyr_A 158 -----LTDIT-PRPQVVYLDPMF 174 (258)
T ss_dssp -----STTCS-SCCSEEEECCCC
T ss_pred -----HHhCc-ccCCEEEEcCCC
Confidence 22111 368999999864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.44 E-value=4e-05 Score=80.80 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-------CC-----------CCCC-ceEEEccCCChhHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-------IA-----------PIRG-AVSLEQDITKPECRARVK 101 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-------~~-----------~i~~-V~~i~gDIt~~~~~~~l~ 101 (832)
.++.+|||||||+|.++..++.. ++.|+|||+++ .. .+.+ +.++++|+.+..
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l------ 152 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM------ 152 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH------
T ss_pred CCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH------
Confidence 46789999999999999999986 46899999998 21 1223 889999986531
Q ss_pred HHHhhccCCcccEEEeCCCC
Q 003302 102 KVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgap 121 (832)
..+.... ..||+|++|++.
T Consensus 153 ~~~~~~~-~~fD~V~~dP~~ 171 (258)
T 2r6z_A 153 PALVKTQ-GKPDIVYLDPMY 171 (258)
T ss_dssp HHHHHHH-CCCSEEEECCCC
T ss_pred HhhhccC-CCccEEEECCCC
Confidence 1111100 467999999753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8.8e-05 Score=78.56 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=70.1
Q ss_pred HHHhhhhhcC----CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCCceEEEccCCCh
Q 003302 29 KLVQLDSKFS----FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRGAVSLEQDITKP 94 (832)
Q Consensus 29 KLiqi~~kf~----fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~ 94 (832)
.|.-++.-|. .+.+..+|||||||+|-++..++...| ...|+|+|+++ +. .-.+..+.+.|....
T Consensus 115 RLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~ 193 (281)
T 3lcv_B 115 RLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED 193 (281)
T ss_dssp HGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred HhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc
Confidence 3444444444 345678999999999999988877544 78999999996 21 112366778887653
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
. +.+.||+||+.-. ....+.... ..++ ..+..|+|||.||.
T Consensus 194 ~------------p~~~~DvaL~lkt-----i~~Le~q~k----g~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 194 R------------LDEPADVTLLLKT-----LPCLETQQR----GSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp C------------CCSCCSEEEETTC-----HHHHHHHST----THHH-HHHHHSSCSEEEEE
T ss_pred C------------CCCCcchHHHHHH-----HHHhhhhhh----HHHH-HHHHHhCCCCEEEe
Confidence 2 2378899998642 122222111 1233 57889999999996
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=76.18 Aligned_cols=91 Identities=19% Similarity=0.004 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..+|||||||.|-++..+. +...|+|+|+++ +. .-+.+.+..+|..... ..+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~------------~~~ 167 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP------------PAE 167 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC------------CCC
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC------------CCC
Confidence 567899999999999887665 467999999997 21 1245677888887643 226
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.||+|++.-. .+..++... .++-.++..|+++|.||.
T Consensus 168 ~~DvvLllk~-----lh~LE~q~~-----~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 168 AGDLALIFKL-----LPLLEREQA-----GSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp BCSEEEEESC-----HHHHHHHST-----THHHHHHHHCBCSEEEEE
T ss_pred CcchHHHHHH-----HHHhhhhch-----hhHHHHHHHhcCCCEEEE
Confidence 7899988632 223333222 122256679999999885
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00099 Score=64.60 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCcC-HHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE-EeC
Q 003302 41 RSSHAVLDLCAAPG-GWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV-LHD 118 (832)
Q Consensus 41 ~~g~~VLDLGcGPG-g~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV-lsD 118 (832)
.++.+||++|||+| ..+.+|+... +..|+|+|++|..-. +++.|++++... .. ..||+| ..+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----~v~dDiF~P~~~-----~Y-----~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----IVRDDITSPRME-----IY-----RGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----EECCCSSSCCHH-----HH-----TTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----eEEccCCCCccc-----cc-----CCcCEEEEcC
Confidence 45679999999999 5899998753 568999999985422 899999986421 11 467999 555
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+++. |+..++.+|..+ |..|+++.+....
T Consensus 98 PP~E--------------l~~~i~~lA~~v---~adliI~pL~~E~ 126 (153)
T 2k4m_A 98 PPAE--------------IHSSLMRVADAV---GARLIIKPLTGED 126 (153)
T ss_dssp CCTT--------------THHHHHHHHHHH---TCEEEEECBTTBC
T ss_pred CCHH--------------HHHHHHHHHHHc---CCCEEEEcCCCCc
Confidence 5432 234455556544 8889987766554
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00071 Score=70.81 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=69.3
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAAS 187 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sS 187 (832)
++||+|++|..--+--++.++.......+..+-..|++.|+|||+|+++-+.--+ ...++..+.+.|..+.+.+|...
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~P~cv 289 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCV 289 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeecCccc
Confidence 8899999997533333333332222233345556789999999999999886544 56788999999999999999544
Q ss_pred CCCCcceeEEEeeccCCC
Q 003302 188 RSASAEIYLLGIKYKAPA 205 (832)
Q Consensus 188 R~~SaEiyvVc~gfk~p~ 205 (832)
- ++-|+|+|..+|-++.
T Consensus 290 ~-snTEv~~vF~~~Dng~ 306 (324)
T 3trk_A 290 T-SNTEMFFLFSNFDNGR 306 (324)
T ss_dssp C-BTTCEEEEEEEECCCC
T ss_pred c-ccceEEEEEEeccCCc
Confidence 4 3779999999998854
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=76.18 Aligned_cols=70 Identities=6% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++.. ++.|+|||+++ +. ..+++.++++|+....... .+. .+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~----~~~---~~ 96 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS----VKT---DK 96 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGG----SCC---SS
T ss_pred CCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHH----hcc---CC
Confidence 357889999999999999999876 36999999997 21 2468999999998864211 000 14
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.|| |++|.+
T Consensus 97 ~~~-vv~NlP 105 (255)
T 3tqs_A 97 PLR-VVGNLP 105 (255)
T ss_dssp CEE-EEEECC
T ss_pred CeE-EEecCC
Confidence 577 777764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=9.4e-05 Score=87.19 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCEEEEEcCCcCHH---HHHHHHhCCCCCEEEEEeCCCCC----------CCC-CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGW---MQVAVQRVPVGSLVLGLDLVPIA----------PIR-GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~---sq~La~~~p~~~~ViGVDLsp~~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|||+|||+|-+ +..+++......+|+||+-+|++ ... .|+++++|+++... +
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~L--------P--- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVA--------P--- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCC--------S---
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccC--------C---
Confidence 45899999999988 55555554444479999999864 122 38999999998642 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.++|+|+|--. |..-..+ +...+|..+-++|+|||.++
T Consensus 427 -EKVDIIVSEwM---G~fLl~E------~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 427 -EKADIIVSELL---GSFADNE------LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp -SCEEEEECCCC---BTTBGGG------CHHHHHHHHGGGEEEEEEEE
T ss_pred -cccCEEEEEcC---ccccccc------CCHHHHHHHHHhcCCCcEEc
Confidence 56799999753 1111111 11234556778999999986
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=67.60 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CC---CCCceEEEccCCCh------------
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------AP---IRGAVSLEQDITKP------------ 94 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~---i~~V~~i~gDIt~~------------ 94 (832)
.+..+||++|| |+-+.+++. ++ +++|+.||.++- .. ..+|.++.+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~-~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAE-LP-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHT-ST-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 45789999998 455555665 44 789999999962 12 23588889997542
Q ss_pred hHHHHHHHHH-hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE-EcCCCCHHHHH
Q 003302 95 ECRARVKKVM-EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK-VFRSQDYSSVL 169 (832)
Q Consensus 95 ~~~~~l~~~L-~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K-VFrs~d~~~ll 169 (832)
.....+...+ .....++||+|+.||... . ..+..+...|+|||.+|+- +.....|..+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~------~----------~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~ 165 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR------V----------GCALATAFSITRPVTLLFDDYSQRRWQHQVE 165 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH------H----------HHHHHHHHHCSSCEEEEETTGGGCSSGGGGH
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc------h----------hHHHHHHHhcCCCeEEEEeCCcCCcchHHHH
Confidence 1011111111 111126799999998521 1 1123466899999999873 23334555443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0006 Score=75.64 Aligned_cols=130 Identities=20% Similarity=0.189 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-----------CCCceEEEccCCChhHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-----------IRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-----------i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
+..+||=||.|-|+.+..+.++ ++ ..|+.|||.+.. + .+++.++.+|.... +..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f-----l~~ 277 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV-----LKR 277 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH-----HHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH-----HHh
Confidence 4579999999999999988876 43 689999999621 1 13467777776542 222
Q ss_pred HHhhccCCcccEEEeCCCCC-CCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC---CHHHHHHHHHHcccc
Q 003302 103 VMEEHGVRAFDLVLHDGSPN-VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ---DYSSVLYCLKQLFEK 178 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapn-v~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~---d~~~ll~~L~~~F~~ 178 (832)
.... ...||+|+.|.... .++..... .........+..+.+.|+|||.||+..-... .+..+...|+..|..
T Consensus 278 ~~~~--~~~yDvIIvDl~D~~~s~~p~g~--a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~ 353 (381)
T 3c6k_A 278 YAKE--GREFDYVINDLTAVPISTSPEED--STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCP 353 (381)
T ss_dssp HHHH--TCCEEEEEEECCSSCCCCC------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSC
T ss_pred hhhc--cCceeEEEECCCCCcccCcccCc--chHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCc
Confidence 2221 15789999996321 11111111 1111234567889999999999998432222 233444556677777
Q ss_pred eEEe
Q 003302 179 VEVD 182 (832)
Q Consensus 179 V~~~ 182 (832)
|...
T Consensus 354 v~~~ 357 (381)
T 3c6k_A 354 VEFS 357 (381)
T ss_dssp EEEE
T ss_pred ceEe
Confidence 7554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00026 Score=84.75 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---C--------------------------------------CCCEEEEEeCCCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---P--------------------------------------VGSLVLGLDLVPIA 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p--------------------------------------~~~~ViGVDLsp~~ 79 (832)
.++..|||+|||+|+++..++... + ....|+|+|+++..
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 467899999999999998877642 0 12579999999721
Q ss_pred -----------CCCC-ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh
Q 003302 80 -----------PIRG-AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ 147 (832)
Q Consensus 80 -----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~ 147 (832)
.+.+ +.+.++|+.+... ....+.||+|++||+.. ... .+... ..-+...|...++
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~---------~~~~~~~d~Iv~NPPYG--~Rl-g~~~~-l~~ly~~l~~~lk 335 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTN---------PLPKGPYGTVLSNPPYG--ERL-DSEPA-LIALHSLLGRIMK 335 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCC---------SCTTCCCCEEEECCCCC--C----CCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCcc---------ccccCCCCEEEeCCCcc--ccc-cchhH-HHHHHHHHHHHHH
Confidence 2333 7889999876421 00013689999998642 111 11111 1112345666777
Q ss_pred hcccCcEEEE
Q 003302 148 FLAPKGTFVT 157 (832)
Q Consensus 148 ~LkpGG~fV~ 157 (832)
.+.|||.+++
T Consensus 336 ~~~~g~~~~i 345 (703)
T 3v97_A 336 NQFGGWNLSL 345 (703)
T ss_dssp HHCTTCEEEE
T ss_pred hhCCCCeEEE
Confidence 7789999987
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00093 Score=74.18 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCcCHHHHHHH--------HhC------CCCCEEEEEeCCCCC------CCC-----------------Cc
Q 003302 42 SSHAVLDLCAAPGGWMQVAV--------QRV------PVGSLVLGLDLVPIA------PIR-----------------GA 84 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La--------~~~------p~~~~ViGVDLsp~~------~i~-----------------~V 84 (832)
.+.+|+|||||+|..+..+. ..+ ++.-.|+..||-... .++ +-
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 36889999999999988762 222 245688888886532 011 11
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC------------chhH-------------Hh-HHh-HH
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA------------WAQE-------------AM-SQN-AL 137 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~------------w~~D-------------~~-~q~-~L 137 (832)
.|+.+.-.+...+ .++ .++||+|+|+.+..+-.. |+.. +| .|. .-
T Consensus 132 ~f~~gvpgSFy~r-----lfP---~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D 203 (374)
T 3b5i_A 132 YFVAGVPGSFYRR-----LFP---ARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQAD 203 (374)
T ss_dssp SEEEEEESCTTSC-----CSC---TTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcc-----cCC---CcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHH
Confidence 2333322221100 122 278899999976443110 1000 11 111 11
Q ss_pred HHHHHHHHHhhcccCcEEEEEEcC
Q 003302 138 VIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 138 ~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
....|+...+.|+|||.||+.+..
T Consensus 204 ~~~fL~~ra~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 204 LAEFLRARAAEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEec
Confidence 345688889999999999997763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00048 Score=72.05 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.++.+|||+|||+|.++..++.. + .+.|+|||+++ + ....++.++++|+...... ... ..
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~--------~~~-~~- 96 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFC--------SLG-KE- 96 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGG--------GSC-SS-
T ss_pred CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChh--------Hcc-CC-
Confidence 356889999999999999999876 2 46999999996 1 1234689999999875421 111 23
Q ss_pred cEEEeCCCCC
Q 003302 113 DLVLHDGSPN 122 (832)
Q Consensus 113 DlVlsDgapn 122 (832)
.+|++|.+.+
T Consensus 97 ~~vv~NlPy~ 106 (249)
T 3ftd_A 97 LKVVGNLPYN 106 (249)
T ss_dssp EEEEEECCTT
T ss_pred cEEEEECchh
Confidence 3888887643
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00094 Score=71.32 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----CC--CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----PI--RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.++.++||++||.||.+..++.. +++|+|+|.+|.. .+ ++++++++|+.++.. .+.......|
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~------~L~~~g~~~v 90 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKR------HLAALGVERV 90 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHH------HHHHTTCSCE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHH------HHHHcCCCCc
Confidence 467899999999999999999987 5799999999721 12 579999999987542 2332223568
Q ss_pred cEEEeCC
Q 003302 113 DLVLHDG 119 (832)
Q Consensus 113 DlVlsDg 119 (832)
|.|++|.
T Consensus 91 DgIL~DL 97 (285)
T 1wg8_A 91 DGILADL 97 (285)
T ss_dssp EEEEEEC
T ss_pred CEEEeCC
Confidence 9999985
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00018 Score=85.15 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=62.5
Q ss_pred CCEEEEEcCCcCHHHHH---HHHhCC---------CCCEEEEEeCCCCC----------CCC-CceEEEccCCChhHHHH
Q 003302 43 SHAVLDLCAAPGGWMQV---AVQRVP---------VGSLVLGLDLVPIA----------PIR-GAVSLEQDITKPECRAR 99 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~---La~~~p---------~~~~ViGVDLsp~~----------~i~-~V~~i~gDIt~~~~~~~ 99 (832)
+.+|||+|||+|.++.. +++..+ ...+|+|||.+++. ... .|+++++|+++.....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~- 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA- 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc-
Confidence 45899999999999643 222111 23499999999742 233 3999999999865321
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.......+|+|+|--. |..-. .+|....|..+.++|+|||.++
T Consensus 489 -----~~~~~ekVDIIVSElm----Gsfl~-----nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 -----KDRGFEQPDIIVSELL----GSFGD-----NELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp -----HHTTCCCCSEEEECCC----BTTBG-----GGSHHHHHHTTGGGSCTTCEEE
T ss_pred -----ccCCCCcccEEEEecc----ccccc-----hhccHHHHHHHHHhCCCCcEEE
Confidence 1111256799999753 11111 1222334445578999999986
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00032 Score=74.76 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCC-CC-----C-CCCceEEEccCCChh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVP-IA-----P-IRGAVSLEQDITKPE 95 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp-~~-----~-i~~V~~i~gDIt~~~ 95 (832)
+.++.+|||+|||+|.++..|+...+. ++.|+|||+++ +. . .+++.++++|+....
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFD 103 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCC
Confidence 357889999999999999999988543 24599999997 21 1 357899999998754
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=73.17 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=70.6
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAAS 187 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sS 187 (832)
++||+|+.|...-+-.++.++-..+.-.+..+-..|+.+|+|||+||++-+.--+ ...++..+.+.|..+.+.+|..+
T Consensus 220 ~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~~p~~~ 299 (670)
T 4gua_A 220 ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCV 299 (670)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEECCTTC
T ss_pred CcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeeeCCCcc
Confidence 6899999997543333443333333333445567899999999999998886544 46788999999999999999665
Q ss_pred CCCCcceeEEEeeccCCC
Q 003302 188 RSASAEIYLLGIKYKAPA 205 (832)
Q Consensus 188 R~~SaEiyvVc~gfk~p~ 205 (832)
- ++.|+|+|..+|-.+.
T Consensus 300 ~-snTEv~~~f~~~Dn~r 316 (670)
T 4gua_A 300 S-SNTEMYLIFRQLDNSR 316 (670)
T ss_dssp S-BTTCEEEEEEEECCCS
T ss_pred c-cCceEEEEEEecCCCc
Confidence 5 3479999999998754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00062 Score=71.42 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++. ++ ..+ ...|+|||+++ +. ..+++.++++|+........ +. +. +
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~~-~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~----~~-~~-~ 89 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GER-LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL----AE-KM-G 89 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HTT-CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH----HH-HH-T
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hCC-CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh----hc-cc-C
Confidence 3578899999999999999 65 322 22399999996 21 12479999999987653321 11 00 2
Q ss_pred cccEEEeCCCCCC
Q 003302 111 AFDLVLHDGSPNV 123 (832)
Q Consensus 111 ~FDlVlsDgapnv 123 (832)
..++|++|.+.+.
T Consensus 90 ~~~~vvsNlPY~i 102 (252)
T 1qyr_A 90 QPLRVFGNLPYNI 102 (252)
T ss_dssp SCEEEEEECCTTT
T ss_pred CceEEEECCCCCc
Confidence 3489999986543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0023 Score=71.24 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQR 63 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~ 63 (832)
..+|+||||++|..+..+...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ 73 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRD 73 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHH
Confidence 578999999999999877765
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0057 Score=65.37 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC----CCCEEEEEeCCCCC-------------------------------------CC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP----VGSLVLGLDLVPIA-------------------------------------PI 81 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p----~~~~ViGVDLsp~~-------------------------------------~i 81 (832)
...||++|++.|+-+.+++..++ .+++|+++|...-. .+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 45899999999998888876653 36789999975210 11
Q ss_pred --CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 82 --RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 82 --~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+|.++.||+.+ .|.....++||+|+.|+. + ... +...|..+...|+|||.+|+-
T Consensus 187 ~~~~I~li~Gda~e---------tL~~~~~~~~d~vfIDaD------~-y~~------~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 187 LDEQVRFLPGWFKD---------TLPTAPIDTLAVLRMDGD------L-YES------TWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp CSTTEEEEESCHHH---------HSTTCCCCCEEEEEECCC------S-HHH------HHHHHHHHGGGEEEEEEEEES
T ss_pred CcCceEEEEeCHHH---------HHhhCCCCCEEEEEEcCC------c-ccc------HHHHHHHHHhhcCCCEEEEEc
Confidence 457788887743 122222267899999963 1 111 235667789999999999873
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0066 Score=67.00 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHh---------------CCCCCEEEEEeCCCCC------CCC------CceEEEccCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQR---------------VPVGSLVLGLDLVPIA------PIR------GAVSLEQDITK 93 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~---------------~p~~~~ViGVDLsp~~------~i~------~V~~i~gDIt~ 93 (832)
....+|+||||++|..+..+... .++.-.|+..||.... .++ +..|+.+.-.+
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877655443 2345679999987531 222 23455554333
Q ss_pred hhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC------------c--------hhHHh-HHh-HHHHHHHHHHHhhccc
Q 003302 94 PECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA------------W--------AQEAM-SQN-ALVIDSVKLATQFLAP 151 (832)
Q Consensus 94 ~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~------------w--------~~D~~-~q~-~L~~~aLk~A~~~Lkp 151 (832)
... ..++. ++||+|+|+.+..+... | ...+| .|. .-....|+.-.+.|+|
T Consensus 130 Fy~-----rlfp~---~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p 201 (359)
T 1m6e_X 130 FYG-----RLFPR---NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP 201 (359)
T ss_dssp SSS-----CCSCT---TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred hhh-----ccCCC---CceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 211 01222 67899999876432110 0 00011 111 1124557788899999
Q ss_pred CcEEEEEEc
Q 003302 152 KGTFVTKVF 160 (832)
Q Consensus 152 GG~fV~KVF 160 (832)
||.||+.++
T Consensus 202 GG~mvl~~~ 210 (359)
T 1m6e_X 202 GGRMVLTIL 210 (359)
T ss_dssp TCEEEEEEE
T ss_pred CceEEEEEe
Confidence 999999665
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.029 Score=62.20 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=64.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.+||||+||.||++.-+...- -..|+|||+++.. .++++.++++||++..... +.... .....||+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~-~~~~~--~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI-IKGFF--KNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHH-HHHHH--CSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHH-HHhhc--ccCCCeeEEEe
Confidence 579999999999998887762 2357799999742 4678888999998865332 21111 01256799999
Q ss_pred CCCCCCC---CCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 118 DGSPNVG---GAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 118 Dgapnv~---g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++++... |....+.. ...|....++ +...++|- +||+
T Consensus 78 gpPCQ~fS~ag~~~~~d~-r~~L~~~~~~-~v~~~~P~-~~v~ 117 (376)
T 3g7u_A 78 GPPCQGFSSIGKGNPDDS-RNQLYMHFYR-LVSELQPL-FFLA 117 (376)
T ss_dssp CCCCCTTC-------CHH-HHHHHHHHHH-HHHHHCCS-EEEE
T ss_pred cCCCCCcccccCCCCCCc-hHHHHHHHHH-HHHHhCCC-EEEE
Confidence 8764421 11111111 2245555554 34556885 3444
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.033 Score=60.12 Aligned_cols=118 Identities=24% Similarity=0.229 Sum_probs=68.6
Q ss_pred CCEEEEEcCCcCHHHHHHH---HhCCCCC--EEEEEeCCCCCCC------------------C-----C--ceEEEccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAV---QRVPVGS--LVLGLDLVPIAPI------------------R-----G--AVSLEQDIT 92 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La---~~~p~~~--~ViGVDLsp~~~i------------------~-----~--V~~i~gDIt 92 (832)
.-+|||+|-|+|--..++. ....+.. ++++++..++... | + +.++.+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 3579999999998543322 1222233 4677777654311 1 1 123445543
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCC-CCCCC-CCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHH
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDG-SPNVG-GAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY 170 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDg-apnv~-g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~ 170 (832)
. .+.......||+|+.|| +|... ..|..+ .+..+.++|+|||+|++ |.+. ..+..
T Consensus 177 ~---------~l~~l~~~~~Da~flDgFsP~kNPeLWs~e----------~f~~l~~~~~pgg~laT--Ytaa--g~VRR 233 (308)
T 3vyw_A 177 K---------RIKEVENFKADAVFHDAFSPYKNPELWTLD----------FLSLIKERIDEKGYWVS--YSSS--LSVRK 233 (308)
T ss_dssp H---------HGGGCCSCCEEEEEECCSCTTTSGGGGSHH----------HHHHHHTTEEEEEEEEE--SCCC--HHHHH
T ss_pred H---------HHhhhcccceeEEEeCCCCcccCcccCCHH----------HHHHHHHHhCCCcEEEE--EeCc--HHHHH
Confidence 2 23333224689999999 45432 246554 45567899999999986 6654 34556
Q ss_pred HHHHcccceEEec
Q 003302 171 CLKQLFEKVEVDK 183 (832)
Q Consensus 171 ~L~~~F~~V~~~K 183 (832)
.|+..=-.|...+
T Consensus 234 ~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 234 SLLTLGFKVGSSR 246 (308)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHHCCCEEEecC
Confidence 6666522455543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.041 Score=60.04 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=49.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.+||||+||.||++..+....-.-..|++||+++.. ..+++.++++||++..... +.. ..||+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~-----~~~---~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEE-----FDR---LSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHH-----HHH---HCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhH-----cCc---CCcCEEEE
Confidence 479999999999999887762111379999999732 3566678899998864221 221 24699999
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
++++.
T Consensus 75 gpPCq 79 (343)
T 1g55_A 75 SPPCQ 79 (343)
T ss_dssp CCC--
T ss_pred cCCCc
Confidence 88643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.053 Score=57.69 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+|..|||+|||+|..+.+++.. +..++|||+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~ 267 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVP 267 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCH
Confidence 57899999999999999888765 46899999987
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.59 Score=49.15 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=71.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHh------CCCCCEEEEEeCCCCC-------------------------------------
Q 003302 43 SHAVLDLCAAPGGWMQVAVQR------VPVGSLVLGLDLVPIA------------------------------------- 79 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~------~p~~~~ViGVDLsp~~------------------------------------- 79 (832)
...|+++|+..|+-+..++.. .+...+|+|+|.-.-.
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999977766543 1245789999843210
Q ss_pred ----C-C-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc
Q 003302 80 ----P-I-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG 153 (832)
Q Consensus 80 ----~-i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG 153 (832)
+ + .+|.++.|++.+ .+...+...+...||+|..|+- + ... +...+..+...|+|||
T Consensus 150 ~~~~g~~~~~i~li~G~~~d-----TL~~~l~~~~~~~~dlv~ID~D------~-Y~~------t~~~le~~~p~l~~GG 211 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRE-----TVPRYLAENPQTVIALAYFDLD------L-YEP------TKAVLEAIRPYLTKGS 211 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHH-----HHHHHHHHCTTCCEEEEEECCC------C-HHH------HHHHHHHHGGGEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHH-----HHHHHHHhCCCCceEEEEEcCc------c-cch------HHHHHHHHHHHhCCCc
Confidence 1 1 346777777643 2223333223356899999962 1 111 2456667889999999
Q ss_pred EEEEEEcCCCCHHHHHHHHHHccc
Q 003302 154 TFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 154 ~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
.+|+--+....+.....++..++.
T Consensus 212 vIv~DD~~~~~w~G~~~A~~ef~~ 235 (257)
T 3tos_A 212 IVAFDELDNPKWPGENIAMRKVLG 235 (257)
T ss_dssp EEEESSTTCTTCTHHHHHHHHHTC
T ss_pred EEEEcCCCCCCChHHHHHHHHHHh
Confidence 999855533333344455555554
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.76 Score=46.62 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.+||=.|++ ||++..++..+- .+..|+.++..+......+.++++|+++......+...+. .+.+|+|+++..
T Consensus 4 ~k~vlITGas-~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~---~~~id~lv~nAg 79 (244)
T 4e4y_A 4 MANYLVTGGS-KGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIK---NVSFDGIFLNAG 79 (244)
T ss_dssp CEEEEEETTT-SHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTT---TCCEEEEEECCC
T ss_pred CCeEEEeCCC-ChHHHHHHHHHHhcCCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHH---hCCCCEEEECCc
Confidence 5567777765 667777765543 3567888898876556678899999999876555554443 257799999986
Q ss_pred CCCCCC-c--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 121 PNVGGA-W--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 121 pnv~g~-w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+. + ..+.+.. . .-...+++.+...|+++|.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~ 124 (244)
T 4e4y_A 80 ILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVF 124 (244)
T ss_dssp CCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEE
T ss_pred cCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEE
Confidence 432221 1 1222211 0 1122344555666777888876
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.11 Score=55.43 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=61.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+..+|||-||+|.++..+... ...++.||+.+- ....++.++..|... .+...++. ..+||
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~-----~L~~l~~~--~~~fd 161 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVS-----KLNALLPP--PEKRG 161 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHH-----HHHHHCSC--TTSCE
T ss_pred CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHH-----HHHHhcCC--CCCcc
Confidence 456899999999999877652 469999999862 122457778887543 22222221 14689
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.||+....+ .+. -+..+|. ....+-|+|++++
T Consensus 162 LVfiDPPYe~k~-----~~~---~vl~~L~-~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 162 LIFIDPSYERKE-----EYK---EIPYAIK-NAYSKFSTGLYCV 196 (283)
T ss_dssp EEEECCCCCSTT-----HHH---HHHHHHH-HHHHHCTTSEEEE
T ss_pred EEEECCCCCCCc-----HHH---HHHHHHH-HhCccCCCeEEEE
Confidence 999998743221 111 1222332 3456789999997
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.15 Score=55.64 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=49.4
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.+||||+||.||++.-+....-..-.|.++|+++.. ..++..++++||++.... .+.. ..+|+|+.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~-----~~~~---~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQ-----VIKK---WNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHH-----HHHH---TTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHH-----Hhcc---CCCCEEEe
Confidence 379999999999998887652111358899999743 356677789999886432 1222 24699998
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
.+++.
T Consensus 76 gpPCQ 80 (333)
T 4h0n_A 76 SPPCQ 80 (333)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 77544
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.24 Score=53.80 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC-CCEE-EEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV-GSLV-LGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~-~~~V-iGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
..+||||+||.||++..+... +. .-.| .|+|+++.. ..++. ++++||++.... .+.. ..+|+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~-----~i~~---~~~Di 79 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIK-----QIES---LNCNT 79 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHH-----HHHH---TCCCE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHH-----Hhcc---CCCCE
Confidence 458999999999999887664 21 1356 799999732 23443 578899986532 1222 24699
Q ss_pred EEeCCCCC
Q 003302 115 VLHDGSPN 122 (832)
Q Consensus 115 VlsDgapn 122 (832)
|+..+++.
T Consensus 80 l~ggpPCQ 87 (327)
T 3qv2_A 80 WFMSPPCQ 87 (327)
T ss_dssp EEECCCCT
T ss_pred EEecCCcc
Confidence 99876543
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=1.2 Score=44.94 Aligned_cols=115 Identities=18% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhcc-CCcccEEEeCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHG-VRAFDLVLHDG 119 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~-~~~FDlVlsDg 119 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++......+.++.+|+++......+...+.... .+.+|+|+++.
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A 84 (241)
T 1dhr_A 6 EARRVLVYGGR-GALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA 84 (241)
T ss_dssp CCCEEEEETTT-SHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence 46778877754 56666665543 34678999998764333346677899998765444433332211 03679999998
Q ss_pred CCCCCCCc----hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 120 SPNVGGAW----AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 120 apnv~g~w----~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.....+.+ ..+.+.. . .-....++.+...|+.+|.+|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~ 131 (241)
T 1dhr_A 85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTL 131 (241)
T ss_dssp CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEE
Confidence 64322211 1111111 1 1122344556666777888876
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.22 Score=52.86 Aligned_cols=68 Identities=13% Similarity=-0.008 Sum_probs=41.5
Q ss_pred CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCch--------hHHhH-HhHHHHHHHHHHHhhcccCc
Q 003302 83 GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA--------QEAMS-QNALVIDSVKLATQFLAPKG 153 (832)
Q Consensus 83 ~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~--------~D~~~-q~~L~~~aLk~A~~~LkpGG 153 (832)
.+.++++|+++. ...+. .++||+|++|++.+....+. ...+. -...+..++..+.++|+|||
T Consensus 21 ~~~i~~gD~~~~------l~~l~---~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G 91 (297)
T 2zig_A 21 VHRLHVGDAREV------LASFP---EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGG 91 (297)
T ss_dssp CEEEEESCHHHH------HTTSC---TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred CCEEEECcHHHH------HhhCC---CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCc
Confidence 567889998652 11122 26789999998754322111 01111 11223567889999999999
Q ss_pred EEEEEE
Q 003302 154 TFVTKV 159 (832)
Q Consensus 154 ~fV~KV 159 (832)
+|++.+
T Consensus 92 ~l~i~~ 97 (297)
T 2zig_A 92 RLVIVV 97 (297)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998854
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.62 Score=57.40 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=61.9
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE-cCCCCH-HHHHHHHHHcccceEEecCCCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV-FRSQDY-SSVLYCLKQLFEKVEVDKPAAS 187 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV-Frs~d~-~~ll~~L~~~F~~V~~~KP~sS 187 (832)
|.|.+|.||.--...|.-...+. ..+....+..|+.+..+||.+|+|+ |..... ..+...+..+|..+.++||.-.
T Consensus 573 Gtf~fVYSDVDQV~d~~~Dl~As--~r~~~~~l~~~l~~ts~GG~~v~KiNFPT~~vw~~if~~~~~~~~~~~i~KPli~ 650 (1299)
T 3iyl_W 573 GTFGLVYADLDQVEDAGTDMPAA--NRAAIAMLGTALQMTTAGGVSVLKVNFPTRAFWTQVFNLYATHATTLHLVKPTIV 650 (1299)
T ss_dssp CCEEEEEECCCCC-----CCHHH--HHHHHHHHHHHHHHEEEEEEEEEEESCCCTTHHHHHHHHTTTTCSCEEEEECCSS
T ss_pred CceEEEEecchhhccCCcchhhh--hHHHHHHHHHHHHhhcCCceEEEEEcCCchHHHHHHHHHhcchhheeeeecceee
Confidence 88999999974333333233332 3455677888999999999999998 555542 2233334455899999999886
Q ss_pred CCCCcceeEEEeeccC
Q 003302 188 RSASAEIYLLGIKYKA 203 (832)
Q Consensus 188 R~~SaEiyvVc~gfk~ 203 (832)
. |.|+|||.-+...
T Consensus 651 N--nvEvf~v~~~r~~ 664 (1299)
T 3iyl_W 651 N--SSEVFLVFGGRQS 664 (1299)
T ss_dssp S--CCCEEEEESCCCT
T ss_pred c--ceEEEEEEeeecc
Confidence 5 5799999877763
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.64 E-value=0.22 Score=53.31 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSL-VLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~-ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
...+||||+||.||++..+... +-... |+++|+++.. ..++..++.+||++..... +... +.+|+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~-----i~~~--~~~Dl 86 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKH-----IQEW--GPFDL 86 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHH-----HHHT--CCCSE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHH-----hccc--CCcCE
Confidence 4568999999999999877664 32222 6899998732 3566778899999865321 2211 45799
Q ss_pred EEeCCCCCCC---C-Cc-hhHHhHHhHHHHHHHHHHHhhcccC-c-----EEEEE
Q 003302 115 VLHDGSPNVG---G-AW-AQEAMSQNALVIDSVKLATQFLAPK-G-----TFVTK 158 (832)
Q Consensus 115 VlsDgapnv~---g-~w-~~D~~~q~~L~~~aLk~A~~~LkpG-G-----~fV~K 158 (832)
|+..+++... | .. -.+. ....|....++ +...++|- | +|++.
T Consensus 87 l~ggpPCQ~fS~ag~~r~g~~d-~r~~L~~~~~r-ii~~~~P~~~~~~P~~~l~E 139 (295)
T 2qrv_A 87 VIGGSPCNDLSIVNPARKGLYE-GTGRLFFEFYR-LLHDARPKEGDDRPFFWLFE 139 (295)
T ss_dssp EEECCCCGGGBTTCTTCCTTTS-TTTTHHHHHHH-HHHHHSCCTTCCCCCEEEEE
T ss_pred EEecCCCccccccCcccccccc-ccchhHHHHHH-HHHHhCcccccCCccEEEEE
Confidence 9988754421 1 11 0111 11245555554 34567776 3 67663
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.31 Score=53.54 Aligned_cols=53 Identities=15% Similarity=-0.069 Sum_probs=42.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCCCCceEEEccCCChh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------APIRGAVSLEQDITKPE 95 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i~~V~~i~gDIt~~~ 95 (832)
++..||++|+|+|++|..|+.... ..+|++|++.+- ...+++.++.+|+....
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchh
Confidence 468999999999999999998632 348999999851 13467999999998765
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.4 Score=51.20 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=58.9
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
++||||.||.||++.-+... + --.|.++|+.+.. ..+ ..++.+||++... .....+|+|+.
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~~-~~~~~~DI~~i~~----------~~~~~~D~l~g 67 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNHS-AKLIKGDISKISS----------DEFPKCDGIIG 67 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHCC-SEEEESCGGGCCG----------GGSCCCSEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHCC-CCcccCChhhCCH----------hhCCcccEEEe
Confidence 47999999999999877654 3 2357799999854 233 3568899987532 11245698887
Q ss_pred CCCCCC---CCC-c-hhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 118 DGSPNV---GGA-W-AQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 118 Dgapnv---~g~-w-~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+++.. .|. . ..|. ...|....++ +...++|- +|++
T Consensus 68 gpPCQ~fS~ag~~~g~~d~--R~~L~~~~~r-~i~~~~Pk-~~~~ 108 (331)
T 3ubt_Y 68 GPPSQSWSEGGSLRGIDDP--RGKLFYEYIR-ILKQKKPI-FFLA 108 (331)
T ss_dssp CCCGGGTEETTEECCTTCG--GGHHHHHHHH-HHHHHCCS-EEEE
T ss_pred cCCCCCcCCCCCccCCCCc--hhHHHHHHHH-HHhccCCe-EEEe
Confidence 654321 111 1 1122 2345555555 44567886 4444
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=90.45 E-value=2 Score=44.50 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
..+.+||=.|++ ||++..++..+ ..+..|++++.+.......+.++++|+++......+...+... .+.+|+|+++.
T Consensus 12 ~~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD~lv~nA 89 (269)
T 3vtz_A 12 FTDKVAIVTGGS-SGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKK-YGRIDILVNNA 89 (269)
T ss_dssp TTTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHH-HSCCCEEEECC
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHH-cCCCCEEEECC
Confidence 357788877765 55665555433 2367899999887544446788999999987555444433221 25779999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
...
T Consensus 90 g~~ 92 (269)
T 3vtz_A 90 GIE 92 (269)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=2.8 Score=43.84 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.+.-. .-..+.++++|+++......+...+... .
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~ 123 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ-L 123 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH-c
Confidence 36788878865 55565554433 235689999887521 1235888999999976554444333221 2
Q ss_pred CcccEEEeCCCCCCC-C-Cc--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVG-G-AW--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~-g-~w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++...... + .. ..+.+.. ..-...+++.+...|+.+|.+|.
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~ 180 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN 180 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence 577999999653321 1 11 1122211 11123455667778888998876
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=90.20 E-value=0.17 Score=54.95 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=58.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.+||||+||.||++.-+... + -..|++||+++.. ..+... ++||++.... ....||+|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~----------~~~~~D~l~ 76 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEK----------TIPDHDILC 76 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGG----------GSCCCSEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHh----------hCCCCCEEE
Confidence 468999999999999888765 2 3468889999732 223332 6888864311 113579999
Q ss_pred eCCCCCCC---CCc-hhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 117 HDGSPNVG---GAW-AQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 117 sDgapnv~---g~w-~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.++++... |.. ..+. ....|....++. ...++|- +|++
T Consensus 77 ~gpPCQ~fS~ag~~~g~~d-~r~~L~~~~~r~-i~~~~P~-~~~~ 118 (327)
T 2c7p_A 77 AGFPCQAFSISGKQKGFED-SRGTLFFDIARI-VREKKPK-VVFM 118 (327)
T ss_dssp EECCCTTTCTTSCCCGGGS-TTSCHHHHHHHH-HHHHCCS-EEEE
T ss_pred ECCCCCCcchhcccCCCcc-hhhHHHHHHHHH-HHhccCc-EEEE
Confidence 98865421 111 1111 112344555543 4457886 4444
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=2.9 Score=44.64 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.|..|+=+|||||.....|+.+.+ ...+.+.+|..+.. +.++|+.++. ..+..+...+...+.... =+
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~-fvde~dl~~l~~~~~~~~----iL 134 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVDEEYLRSIKKQLHPSK----II 134 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCCHHHHHHHHHHHTTSC----EE
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEec-cCCHHHHHHHHHhccCCC----EE
Confidence 367999999999999999998765 34689999998854 6688887777 447666555554443211 34
Q ss_pred EEeCCCCCCCC-C-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCc
Q 003302 115 VLHDGSPNVGG-A-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASA 192 (832)
Q Consensus 115 VlsDgapnv~g-~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~Sa 192 (832)
.++|-...-++ . +..+...-. .+-...+..|+|-..++ | ||.+-......- .++-.-...=|+.....|+
T Consensus 135 LISDIRS~r~~~ep~t~~ll~Dy----~lQ~~w~~~LkP~aS~L-K-FR~P~p~~~~~~--~y~~dG~~~Lq~w~p~~St 206 (307)
T 3mag_A 135 LISDVRSKRGGNEPSTADLLSNY----ALQNVMISILNPVASSL-K-WRCPFPDQWIKD--FYIPHGNKMLQPFAPSYSA 206 (307)
T ss_dssp EEECCCC------CCHHHHHHHH----HHHHHHHHHHCCSEEEE-E-ECCCCGGGCCCC--EEEECCEEECCTTCCTTCC
T ss_pred EEEEecCCCCCCCccHHHHHHHH----HHHHHHHHHhhhHHHhc-c-ccCCCCcCCCcc--eEecCCCEEecccCCCCcc
Confidence 56665432111 1 111111111 12234567899987775 2 444322211100 0111222333666677888
Q ss_pred ceeEEEeeccCC
Q 003302 193 EIYLLGIKYKAP 204 (832)
Q Consensus 193 EiyvVc~gfk~p 204 (832)
|..+++.+..+|
T Consensus 207 E~RL~v~~~~~~ 218 (307)
T 3mag_A 207 EMRLLSIYTGEN 218 (307)
T ss_dssp CEEEEEECCTTC
T ss_pred eEEEEEecCCCc
Confidence 988887665554
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=90.09 E-value=1.4 Score=42.76 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=44.6
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
++||=.|+ +|+++..++..+-.+..|++++.++- ++.+|++++.....+...+ +.+|+|+++...
T Consensus 4 M~vlVtGa-sg~iG~~~~~~l~~g~~V~~~~r~~~-------~~~~D~~~~~~~~~~~~~~-----~~~d~vi~~ag~ 68 (202)
T 3d7l_A 4 MKILLIGA-SGTLGSAVKERLEKKAEVITAGRHSG-------DVTVDITNIDSIKKMYEQV-----GKVDAIVSATGS 68 (202)
T ss_dssp CEEEEETT-TSHHHHHHHHHHTTTSEEEEEESSSS-------SEECCTTCHHHHHHHHHHH-----CCEEEEEECCCC
T ss_pred cEEEEEcC-CcHHHHHHHHHHHCCCeEEEEecCcc-------ceeeecCCHHHHHHHHHHh-----CCCCEEEECCCC
Confidence 36787775 57777777665445678999987653 4788999976544333322 457999998764
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.93 E-value=3.2 Score=42.69 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------------------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------------------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+.+||=.|++. |++..++..+ ..+..|+.+|.+.-. .-.++.++++|+++.....
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 367888777764 5555544433 236789999886210 1135788999999986554
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCC-chhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGA-WAQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~-w~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+...+... .+.+|+|+++......+. ...+.+.. . .-...+++.+...|..+|.+|+
T Consensus 88 ~~~~~~~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 88 RELANAVAE-FGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp HHHHHHHHH-HSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHH-cCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence 444333221 256799999986432221 11111111 1 1123445566677788898876
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.93 E-value=3.2 Score=42.14 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++.....++.++.+|+++......+...+... .+.+|+|+++..
T Consensus 6 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~g~id~lv~~Ag 83 (250)
T 2fwm_X 6 SGKNVWVTGAG-KGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAE-TERLDALVNAAG 83 (250)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHH-CSCCCEEEECCC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHH-cCCCCEEEECCC
Confidence 35678877765 66666555433 2357899998876332224888999999976554444433221 257799999975
Q ss_pred C
Q 003302 121 P 121 (832)
Q Consensus 121 p 121 (832)
.
T Consensus 84 ~ 84 (250)
T 2fwm_X 84 I 84 (250)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.90 E-value=0.38 Score=51.85 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=43.7
Q ss_pred CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCC--Cchh-HHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 83 GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG--AWAQ-EAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 83 ~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g--~w~~-D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.++++|.... + ..+. .++||+|++||+.+.+. .|.. .+..-...+..+|..+.++|+|||.+++.+
T Consensus 14 ~~~ii~gD~~~~-----l-~~l~---~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 14 NGSMYIGDSLEL-----L-ESFP---EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SEEEEESCHHHH-----G-GGSC---SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEeCcHHHH-----H-hhCC---CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 466788886541 1 1222 26789999999866542 1211 111112345678889999999999999865
Q ss_pred c
Q 003302 160 F 160 (832)
Q Consensus 160 F 160 (832)
-
T Consensus 85 ~ 85 (323)
T 1boo_A 85 G 85 (323)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=2.9 Score=42.63 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++.| |++..++..+ ..+..|+.++.+.-. +..++.++++|+++......+...+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~- 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ- 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH-
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH-
Confidence 4678888888733 3444333322 236689998876421 1126899999999987655554444322
Q ss_pred CCcccEEEeCCCCCC-----CCCc--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNV-----GGAW--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv-----~g~w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.+|+|+++..... ...+ ..+.+.. ..-...+++.+...|+++|.+|+
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 145 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVT 145 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEE
Confidence 256799999975432 1111 1111111 01123445566777888999886
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.81 E-value=2.2 Score=42.44 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|+ +|+++..++..+- .+..|++++.++- ...+.++++|+++......+...+.. .+.+|+|+++...
T Consensus 2 ~k~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~d~li~~ag~ 76 (242)
T 1uay_A 2 ERSALVTGG-ASGLGRAAALALKARGYRVVVLDLRRE--GEDLIYVEGDVTREEDVRRAVARAQE--EAPLFAVVSAAGV 76 (242)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHHTCEEEEEESSCC--SSSSEEEECCTTCHHHHHHHHHHHHH--HSCEEEEEECCCC
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEccCcc--ccceEEEeCCCCCHHHHHHHHHHHHh--hCCceEEEEcccc
Confidence 456777775 4677666554431 2568999988765 45678999999998765544443321 2567999998754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=89.70 E-value=3.5 Score=42.37 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=49.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. -.++.++.+|+++......+...+... .+.+|+|+++...
T Consensus 8 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g~iD~lv~~Ag~ 84 (264)
T 2dtx_A 8 DKVVIVTGAS-MGIGRAIAERFVDEGSKVIDLSIHDPG-EAKYDHIECDVTNPDQVKASIDHIFKE-YGSISVLVNNAGI 84 (264)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSCCC-SCSSEEEECCTTCHHHHHHHHHHHHHH-HSCCCEEEECCCC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEecCccc-CCceEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEEECCCC
Confidence 5678877765 56665555433 235689999887643 245888999999976554443333221 2567999999764
Q ss_pred C
Q 003302 122 N 122 (832)
Q Consensus 122 n 122 (832)
.
T Consensus 85 ~ 85 (264)
T 2dtx_A 85 E 85 (264)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.29 Score=53.85 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhH-HHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPEC-RARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~-~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+|||+ |.++..+++.++ ...|+++|.++-. .--++.++ |..+... .+.+.....+ ..||
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g---~g~D 256 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGK---PEVD 256 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSS---SCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCC---CCCC
Confidence 57899999999877 666666666654 2389999988621 11244433 3332222 2334333322 2579
Q ss_pred EEEeCCCCCCCCCch---hHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWA---QEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~---~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+... ++.+. .++.. . -...++..+.++|++||++++
T Consensus 257 vvid~~----g~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 257 CGVDAV----GFEAHGLGDEANT-E-TPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp EEEECS----CTTCBCSGGGTTS-B-CTTHHHHHHHHHEEEEEEEEC
T ss_pred EEEECC----CCccccccccccc-c-ccHHHHHHHHHHHhcCCEEEE
Confidence 998643 12110 00000 0 000134567899999999986
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.41 E-value=0.78 Score=49.39 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC-hhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK-PECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~-~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+|||+ |.++..+++.++ ..|++++.++-. .--++..+ .|..+ ......+........-..||
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~-~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEE-EcCcccccHHHHHHHHhccccCCCCC
Confidence 57899999999765 444555566654 569999987521 01122211 12221 22233344333200003569
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... + . ..+..+..+|++||++|+
T Consensus 243 ~vid~~g----~---~----------~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 243 VTIDCSG----N---E----------KCITIGINITRTGGTLML 269 (352)
T ss_dssp EEEECSC----C---H----------HHHHHHHHHSCTTCEEEE
T ss_pred EEEECCC----C---H----------HHHHHHHHHHhcCCEEEE
Confidence 9996531 1 0 134567889999999987
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=89.39 E-value=0.82 Score=47.16 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCCEEEEEcC-CcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CC-CCceEEEccCCChhHHHHHHHHHhhccCC-
Q 003302 42 SSHAVLDLCA-APGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR- 110 (832)
Q Consensus 42 ~g~~VLDLGc-GPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~- 110 (832)
.+.+||=.|+ |+||++..++..+ ..+..|+.++.++.. .+ .++.++.+|+++......+...+... .+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~ 84 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA-IGA 84 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH-HCT
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHH-hCC
Confidence 3578888898 4788877766544 235689999877521 12 25788999999987554444433221 14
Q ss_pred --cccEEEeCCCCCC------CCCc--hhHHhHH-h----HHHHHHHHHHHhhcccCcEEEE
Q 003302 111 --AFDLVLHDGSPNV------GGAW--AQEAMSQ-N----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 --~FDlVlsDgapnv------~g~w--~~D~~~q-~----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++..... ...+ ..+.+.. + .-....++.+...|+++|.+|.
T Consensus 85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 146 (269)
T 2h7i_A 85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVG 146 (269)
T ss_dssp TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEE
Confidence 7899999975432 1111 1111111 1 1122345556667777888886
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.25 Score=51.46 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+|..|||++||+|..+.++... +..++|||+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~ 244 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNA 244 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCH
Confidence 67899999999999998887765 46999999987
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.32 E-value=2.6 Score=43.45 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++..... .-.++.++++|+++......+...+... .
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~ 94 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH-F 94 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence 36788877765 55665554433 235688887765321 1245889999999976554444333221 2
Q ss_pred CcccEEEeCCCCCCCCC-c--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGA-W--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~-w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+. + ..+.+.. ..-...+++.+...|+++|.+|+
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 150 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL 150 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence 56799999976443221 1 1122211 11123445667778888999886
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.26 E-value=0.38 Score=47.14 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCc--CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP--GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP--Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-.||+. |..+..++... ++.|++++.++-. ...++.. ..|.++......+...... ..||
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~---~~~D 109 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDG---YGVD 109 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTT---CCEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCC---CCCe
Confidence 57899999998532 32222233332 4689999987521 0112222 2355554444444443322 3579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.+.. + . .+..+.++|+|||++|+
T Consensus 110 ~vi~~~g----~----~----------~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 110 VVLNSLA----G----E----------AIQRGVQILAPGGRFIE 135 (198)
T ss_dssp EEEECCC----T----H----------HHHHHHHTEEEEEEEEE
T ss_pred EEEECCc----h----H----------HHHHHHHHhccCCEEEE
Confidence 9997642 1 1 23467789999999987
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.11 E-value=1.5 Score=44.09 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhcc-CCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHG-VRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~-~~~FDlVlsDga 120 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++......+.++.+|+++......+...+.... .+.+|+|+++..
T Consensus 3 ~k~vlITGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag 81 (236)
T 1ooe_A 3 SGKVIVYGGK-GALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG 81 (236)
T ss_dssp CEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 4567767754 56666555543 23568999988764333346677899998765444433332211 036799999986
Q ss_pred CCCCCC--ch--hHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 121 PNVGGA--WA--QEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 121 pnv~g~--w~--~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+. +. .+.+.. . .-....++.+...|+.+|.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 127 (236)
T 1ooe_A 82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQL 127 (236)
T ss_dssp CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEE
Confidence 432211 11 111111 0 1112345556666777888876
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.99 E-value=0.45 Score=51.66 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCce-EEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAV-SLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+|||+ |.++..+++.++ ...|+++|.++-. .--++. ++. ..+....+.+..... +.||
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~~~~----gg~D 260 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGATHVIN--SKTQDPVAAIKEITD----GGVN 260 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTCSEEEE--TTTSCHHHHHHHHTT----SCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCCEEec--CCccCHHHHHHHhcC----CCCc
Confidence 57899999999876 555555666553 2379999987521 001222 222 222222333333222 3579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... + ...+..+..+|++||++++
T Consensus 261 ~vid~~g----~-------------~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 261 FALESTG----S-------------PEILKQGVDALGILGKIAV 287 (371)
T ss_dssp EEEECSC----C-------------HHHHHHHHHTEEEEEEEEE
T ss_pred EEEECCC----C-------------HHHHHHHHHHHhcCCEEEE
Confidence 9986421 1 1234567899999999987
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.98 E-value=3.5 Score=42.68 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++..... .-..+.++++|+++......+...+... .
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA-L 107 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH-c
Confidence 46788888876 45555544433 236688888765411 1235788999999987554444333221 2
Q ss_pred CcccEEEeCCCCCCCCC-c--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGA-W--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~-w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+. + ..+.+.. ..-...+++.+...|+++|.+|+
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~ 163 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIIT 163 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEE
Confidence 57799999986432221 1 1122211 11123455667778888999886
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=2.6 Score=42.74 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCC-EEEEEeCCCCC----------CCCCceEEEccCCCh-hHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGS-LVLGLDLVPIA----------PIRGAVSLEQDITKP-ECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~-~ViGVDLsp~~----------~i~~V~~i~gDIt~~-~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|+ +|+++..++..+- .+. .|+.++.++-. +-.++.++.+|+++. .....+...+... .
T Consensus 5 ~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~ 82 (254)
T 1sby_A 5 NKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ-L 82 (254)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH-H
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh-c
Confidence 567887776 5788777766543 234 38888876521 112578899999986 4333333222211 1
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|+++...
T Consensus 83 g~id~lv~~Ag~ 94 (254)
T 1sby_A 83 KTVDILINGAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 567999999764
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.48 E-value=1.8 Score=44.34 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------CC---CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------AP---IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++- .. -.++.++.+|+++......+...+...
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~- 83 (267)
T 2gdz_A 6 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH- 83 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH-
Confidence 35678877764 56665555433 23568999987641 11 124788999999976554443333221
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 84 ~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 84 FGRLDILVNNAGVN 97 (267)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 25679999998643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=0.81 Score=49.09 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCce-EEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAV-SLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=+|||+ |.++..+++.++ +..|+++|.++-. .--++. ++.. .+ ...+.+.....+ ..||
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~lGa~~~i~~--~~-~~~~~v~~~t~g---~g~d 241 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAREVGADAAVKS--GA-GAADAIRELTGG---QGAT 241 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHHTTCSEEEEC--ST-THHHHHHHHHGG---GCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCCCEEEcC--CC-cHHHHHHHHhCC---CCCe
Confidence 57899999999865 445555565553 5699999988621 111222 2222 22 233445444433 3579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+-.. ++ ...+..+..+|++||++++
T Consensus 242 ~v~d~~----G~-------------~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 242 AVFDFV----GA-------------QSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp EEEESS----CC-------------HHHHHHHHHHEEEEEEEEE
T ss_pred EEEECC----CC-------------HHHHHHHHHHHhcCCEEEE
Confidence 999642 11 1234567899999999987
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=0.71 Score=49.44 Aligned_cols=93 Identities=15% Similarity=0.023 Sum_probs=57.1
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||-+|||+ |.++..+++.++ ..|++++.++-. .--+...+ .|..+......+.. .. +.+|+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~~-~~----g~~d~ 235 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAEVA-VNARDTDPAAWLQK-EI----GGAHG 235 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEE-EETTTSCHHHHHHH-HH----SSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCEE-EeCCCcCHHHHHHH-hC----CCCCE
Confidence 57899999999977 666777777764 599999987621 11122211 12333333333443 11 45799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+.... + ...+..+..+|++||++++
T Consensus 236 vid~~g----~-------------~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 236 VLVTAV----S-------------PKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp EEESSC----C-------------HHHHHHHHHHEEEEEEEEE
T ss_pred EEEeCC----C-------------HHHHHHHHHHhccCCEEEE
Confidence 886521 1 1234567899999999987
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=88.12 E-value=0.34 Score=55.40 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C---CCCceEEEccCCChhHH-------HHHHHHHhh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P---IRGAVSLEQDITKPECR-------ARVKKVMEE 106 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~---i~~V~~i~gDIt~~~~~-------~~l~~~L~~ 106 (832)
..+||||+||.||++.-+... + .-.|++||+++.. . .|+..++++||++.... ..+...+..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 357999999999999877653 2 2358999999732 1 26677888999875310 011111111
Q ss_pred ccCCcccEEEeCCCCC
Q 003302 107 HGVRAFDLVLHDGSPN 122 (832)
Q Consensus 107 ~~~~~FDlVlsDgapn 122 (832)
....+|+|+..++|.
T Consensus 166 -~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 166 -HIPEHDVLLAGFPCQ 180 (482)
T ss_dssp -HSCCCSEEEEECCCC
T ss_pred -cCCCCCEEEecCCCc
Confidence 114579999876543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.02 E-value=4.6 Score=41.47 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------------------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------------------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.+|.+.-. .-..+.++++|+++.....
T Consensus 12 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 12 TGKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 46788878865 55555544433 236789999886210 0135888999999987655
Q ss_pred HHHHHHhhccCCcccEEEeCCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
.+...+... ++.+|+|+++....
T Consensus 91 ~~~~~~~~~-~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 91 AALQAGLDE-LGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHH-HCCCCEEEECCCCC
T ss_pred HHHHHHHHH-cCCCCEEEECCCCC
Confidence 444433221 25679999998644
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.02 E-value=4.6 Score=41.15 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-CcCHHHHHHHHh-CCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCA-APGGWMQVAVQR-VPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGc-GPGg~sq~La~~-~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|+ |.|. +..++.. ...+..|+.++.+.-. ...++.++++|+++......+...+...
T Consensus 21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~- 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK- 98 (266)
T ss_dssp TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH-
Confidence 4678887887 4543 3333322 2236789999877411 1246889999999987655444433322
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 99 ~g~id~li~~Ag~~ 112 (266)
T 3o38_A 99 AGRLDVLVNNAGLG 112 (266)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCCcEEEECCCcC
Confidence 25679999998643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.86 E-value=0.99 Score=48.72 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCC--C-hhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDIT--K-PECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt--~-~~~~~~l~~~L~~~~~~~ 111 (832)
+++|.+||-+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|.. + ......+..... ..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~----~g 242 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLG----CK 242 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHT----SC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhC----CC
Confidence 57899999999865 555555666654 2389999987521 11122211 1222 1 222333333221 35
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
||+|+.... + . ..+..+.++|++||++++
T Consensus 243 ~D~vid~~g----~---~----------~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 243 PEVTIECTG----A---E----------ASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp CSEEEECSC----C---H----------HHHHHHHHHSCTTCEEEE
T ss_pred CCEEEECCC----C---h----------HHHHHHHHHhcCCCEEEE
Confidence 799996421 1 1 134467889999999987
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.59 Score=48.53 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=41.7
Q ss_pred ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCC-CCc----hhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 84 AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVG-GAW----AQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 84 V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~-g~w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..++++|... .+. .+.. ++||+|++||+.+.+ ..| ..+.+ ...+...|..+.++|+|||.+++.
T Consensus 5 ~~l~~gD~~~-----~l~-~l~~---~~vdlI~~DPPY~~~~~~~d~~~~~~~y--~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFD-----FLD-QVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEF--LAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHH-----HHH-HSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHH--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHH-----HHH-hccc---cccCEEEECCCCCCCcccccccCCHHHH--HHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3467787653 122 2332 678999999987655 222 11222 234567788889999999999885
Q ss_pred E
Q 003302 159 V 159 (832)
Q Consensus 159 V 159 (832)
+
T Consensus 74 ~ 74 (260)
T 1g60_A 74 N 74 (260)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.76 E-value=1.8 Score=42.30 Aligned_cols=100 Identities=18% Similarity=0.093 Sum_probs=64.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.-|||||-|.|----+|...+| +..|+.+|-.--. ..|.-.+++|||... .......++ ...-++.+|.
T Consensus 42 GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~t--L~~~~~r~g----~~a~LaHaD~ 114 (174)
T 3iht_A 42 GPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHPDSTPPEAQLILGDIRET--LPATLERFG----ATASLVHADL 114 (174)
T ss_dssp SCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCGGGCCCGGGEEESCHHHH--HHHHHHHHC----SCEEEEEECC
T ss_pred CceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCCCCCCchHheecccHHHH--HHHHHHhcC----CceEEEEeec
Confidence 4599999999999999999998 6789999987432 123356789998752 222222232 3336777774
Q ss_pred CCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 120 SPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 120 apnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
. ++....|.... .-+--++..+|.|||.+|.
T Consensus 115 G---~g~~~~d~a~a----~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 115 G---GHNREKNDRFA----RLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp C---CSCHHHHHHHH----HHHHHHHGGGEEEEEEEEE
T ss_pred C---CCCcchhHHHH----HhhhHHHHHHhcCCcEEEe
Confidence 2 23333333321 1122356789999999986
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=87.69 E-value=4.9 Score=41.26 Aligned_cols=114 Identities=9% Similarity=0.059 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++..... . -.++.++++|+++......+...+...
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788878876 55666555544 446788888765311 1 134788999999987655554443322
Q ss_pred cCCcccEEEeCCCCCCCCC-c--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGA-W--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~-w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.+|+|+++......+. + ..+.+.. . .-....++.+...|+++|.+|+
T Consensus 89 -~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 145 (262)
T 3ksu_A 89 -FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIIT 145 (262)
T ss_dssp -HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEE
Confidence 257899999986433222 1 1122211 1 1123445566677778888876
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=87.60 E-value=1.3 Score=45.38 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. . -.++.++++|+++......+...+... .+.+|
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~id 84 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQT-LGAID 84 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH-HSSEE
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHH-hCCCC
Confidence 36788878866 45555554433 236789999887521 1 135788999999987655444433221 26789
Q ss_pred EEEeCCCCCCCCC-c--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGA-W--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~-w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+++......+. + ..+.+.. . .-....++.+...|+.+|.+|.
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 136 (255)
T 4eso_A 85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVF 136 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999975432221 1 1121111 0 1123345556667778898876
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=3.1 Score=42.85 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=52.6
Q ss_pred CCEEEEEcCC-cCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAA-PGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcG-PGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ +||++..++..+ ..+..|+.++.++-. ...++.++.+|+++......+...+... .+.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g~ 84 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD-LGS 84 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-TSC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence 5788888986 477777666544 336789999887531 1234788999999987555444433321 267
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 85 id~lv~nAg~ 94 (275)
T 2pd4_A 85 LDFIVHSVAF 94 (275)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCcc
Confidence 8999999864
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.43 E-value=2.8 Score=42.61 Aligned_cols=116 Identities=9% Similarity=-0.017 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCC-cCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAA-PGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcG-PGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+||=.|++ +||++..++..+ ..+..|+.++.+.-. ..+.+.++.+|+++......+...+... .
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~ 90 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH-W 90 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-C
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH-c
Confidence 357889988985 466666555443 235689999877421 1345889999999987655555444332 2
Q ss_pred CcccEEEeCCCCCCC-----CCc---hhHHhHHh-----HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVG-----GAW---AQEAMSQN-----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~-----g~w---~~D~~~q~-----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++...... ..+ ..+.+... .-...+++.+...|+++|.+|+
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 151 (271)
T 3ek2_A 91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLT 151 (271)
T ss_dssp SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEE
Confidence 678999999864321 111 11212110 0123345556667777888876
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.33 E-value=3.5 Score=43.95 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCC------------C-----CCCCceEEEccCCChhHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPI------------A-----PIRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~------------~-----~i~~V~~i~gDIt~~~~~~~l~ 101 (832)
.+++||=.| |+|+++.+++..+- .+..|++++..+- . .-.++.++.+|+++......+
T Consensus 9 ~~~~vlVTG-atG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 86 (362)
T 3sxp_A 9 ENQTILITG-GAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL- 86 (362)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-
Confidence 467888666 67888887766553 3679999987542 1 113578999999997654332
Q ss_pred HHHhhccCCcccEEEeCCCC
Q 003302 102 KVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgap 121 (832)
. ...+|+|++.+++
T Consensus 87 ---~---~~~~D~vih~A~~ 100 (362)
T 3sxp_A 87 ---E---KLHFDYLFHQAAV 100 (362)
T ss_dssp ---T---TSCCSEEEECCCC
T ss_pred ---h---ccCCCEEEECCcc
Confidence 1 2567999999864
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=5.2 Score=41.32 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--------------------------CCCCceEEEccCCCh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--------------------------PIRGAVSLEQDITKP 94 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--------------------------~i~~V~~i~gDIt~~ 94 (832)
.+.+||=.|++. |++..++..+ ..+..|+.+|.++-. .-..+.++++|+++.
T Consensus 10 ~~k~~lVTGas~-gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 10 EGKVAFVTGAAR-GQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 367888788765 4554444433 236789999886210 113578899999998
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
.....+...+... .+.+|+|+++....
T Consensus 89 ~~v~~~~~~~~~~-~g~id~lv~nAg~~ 115 (286)
T 3uve_A 89 DALKAAVDSGVEQ-LGRLDIIVANAGIG 115 (286)
T ss_dssp HHHHHHHHHHHHH-HSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHH-hCCCCEEEECCccc
Confidence 7655444433221 25679999998643
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=3.3 Score=44.54 Aligned_cols=74 Identities=18% Similarity=0.037 Sum_probs=47.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCCC------------------------CCC---ceEEEccCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIAP------------------------IRG---AVSLEQDITK 93 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~~------------------------i~~---V~~i~gDIt~ 93 (832)
+++||=.| |+|+++.+++..+- .+..|++++..+-.. ..+ +.++.+|+++
T Consensus 2 ~m~vlVTG-atG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 46777666 56788777765442 456899998764221 124 8899999999
Q ss_pred hhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 94 PECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 94 ~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
..... ..+... +.+|+|+|.+++.
T Consensus 81 ~~~~~---~~~~~~--~~~d~vih~A~~~ 104 (397)
T 1gy8_A 81 EDFLN---GVFTRH--GPIDAVVHMCAFL 104 (397)
T ss_dssp HHHHH---HHHHHS--CCCCEEEECCCCC
T ss_pred HHHHH---HHHHhc--CCCCEEEECCCcc
Confidence 76433 333321 3369999997643
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.16 E-value=3.6 Score=42.47 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++. |++..++..+ ..+..|+.++..... .-..+.++++|+++......+...+... .
T Consensus 26 ~~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA-F 103 (267)
T ss_dssp -CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence 467888777665 4554444332 225678777543321 1235788999999987655444433322 2
Q ss_pred CcccEEEeCCCCCCCCC-c--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGA-W--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~-w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+. + ..+.+.. . .-....++.+...|+++|.+|.
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~ 159 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIIN 159 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEE
Confidence 67899999985432221 1 1111111 1 1123445566777888898876
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.16 E-value=2.1 Score=45.26 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+++||=.| |+|.++.+++..+- ....|++++..+.. ..+++.++.+|+++..... ..+..
T Consensus 23 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~-- 96 (346)
T 4egb_A 23 NAMNILVTG-GAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLE---HVIKE-- 96 (346)
T ss_dssp -CEEEEEET-TTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHH---HHHHH--
T ss_pred CCCeEEEEC-CccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHH---HHHhh--
Confidence 457888676 56777776665442 23689999876521 1257999999999976433 33433
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
..+|+|++.+++.
T Consensus 97 -~~~d~Vih~A~~~ 109 (346)
T 4egb_A 97 -RDVQVIVNFAAES 109 (346)
T ss_dssp -HTCCEEEECCCCC
T ss_pred -cCCCEEEECCccc
Confidence 2359999988653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.13 E-value=5 Score=41.18 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.+.+||=.|++ ||++..++..+ ..+..|++++.+.-. ....+.++++|++++.....+...+... .+.+|+|+++.
T Consensus 27 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD~lv~nA 104 (260)
T 3un1_A 27 QQKVVVITGAS-QGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIER-FGRIDSLVNNA 104 (260)
T ss_dssp TCCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHH-HSCCCEEEECC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHH-CCCCCEEEECC
Confidence 35678866654 66666555443 236789999987633 2346889999999987555444333221 25779999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
...
T Consensus 105 g~~ 107 (260)
T 3un1_A 105 GVF 107 (260)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=87.10 E-value=2.6 Score=44.18 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++. +|++..++..+ ..+..|+.++.+.-. ....+.++++|+++......+...+... .+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g 107 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE-WG 107 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence 367888889864 35554444332 236789999887521 1245788999999987655554443322 25
Q ss_pred cccEEEeCCCCCCC-----CCc--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVG-----GAW--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~-----g~w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++...... ..+ ..+.+.. ..-...+++.+...|+.+|.+|+
T Consensus 108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~ 166 (296)
T 3k31_A 108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILT 166 (296)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 77999999864321 111 1111111 11123445566677778999886
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.00 E-value=6.6 Score=39.87 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .+ ..+.++++|+++......+...+... ++.+|
T Consensus 6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~id 83 (257)
T 3tpc_A 6 KSRVFIVTGAS-SGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQE-FGHVH 83 (257)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCC
Confidence 35778877776 55555554433 236689999887632 11 25788999999976555444433221 25779
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 84 ~lv~nAg~~ 92 (257)
T 3tpc_A 84 GLVNCAGTA 92 (257)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998643
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=86.84 E-value=6.4 Score=39.92 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=65.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++.... ...+..|+++......+...+.. ..+.+|+|++++..
T Consensus 22 ~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~d~~d~~~v~~~~~~~~~-~~g~iD~li~~Ag~ 97 (251)
T 3orf_A 22 SKNILVLGGS-GALGAEVVKFFKSKSWNTISIDFRENPNA--DHSFTIKDSGEEEIKSVIEKINS-KSIKVDTFVCAAGG 97 (251)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCCTTS--SEEEECSCSSHHHHHHHHHHHHT-TTCCEEEEEECCCC
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCccccc--ccceEEEeCCHHHHHHHHHHHHH-HcCCCCEEEECCcc
Confidence 5678877766 55666555443 23678999998864321 24567788887665555444432 23678999999864
Q ss_pred CCCCC----chhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 122 NVGGA----WAQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 122 nv~g~----w~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
...+. ...+.+.. ..-...+++.+...++++|.||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 142 (251)
T 3orf_A 98 WSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVL 142 (251)
T ss_dssp CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEE
Confidence 32111 11121111 11123445666777888888886
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.78 E-value=0.95 Score=48.83 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=41.8
Q ss_pred ceEE-EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCC-CCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 84 AVSL-EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVG-GAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 84 V~~i-~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~-g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..++ ++|.... + ..+.. ++||+|++||+.+.+ +.|.. ...-...+...|..+.++|+|||.+++.+-
T Consensus 39 ~~l~i~gD~l~~-----L-~~l~~---~svDlI~tDPPY~~~~d~~~~-~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 39 RHVYDVCDCLDT-----L-AKLPD---DSVQLIICDPPYNIMLADWDD-HMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEEECCHHHH-----H-HTSCT---TCEEEEEECCCSBCCGGGGGT-CSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ceEEECCcHHHH-----H-HhCcc---CCcCEEEECCCCCCCCCCccC-HHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 3455 8886542 2 22332 578999999976654 22320 111123456777888999999999998653
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.72 E-value=0.79 Score=50.25 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChh-HHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPE-CRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~-~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+|||+ |.++..+++.++ ...|+++|.++-. .--++.++. .++.. ..+.+.....+ ..||
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~lGa~~i~--~~~~~~~~~~v~~~t~g---~g~D 256 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGFEIAD--LSLDTPLHEQIAALLGE---PEVD 256 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEE--TTSSSCHHHHHHHHHSS---SCEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHcCCcEEc--cCCcchHHHHHHHHhCC---CCCC
Confidence 57899999999866 555666666664 2379999988621 112444332 22211 23334433322 3579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+-.......+ +..+...+ .-...++..+.++|++||++++
T Consensus 257 vvid~~G~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 257 CAVDAVGFEARG-HGHEGAKH-EAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp EEEECCCTTCBC-SSTTGGGS-BCTTHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCCcccc-cccccccc-cchHHHHHHHHHHHhcCCEEEE
Confidence 998653210000 00000000 0001234567899999999986
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=5.1 Score=40.97 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCCC-CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIAP-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
++||=.| |+|+++.+++..+.. +..|++++.++... ..++.++.+|+++..... ..+ ..+|+|+|+++.
T Consensus 4 k~vlVTG-asg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~---~~~-----~~~D~vi~~Ag~ 74 (267)
T 3rft_A 4 KRLLVTG-AAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVN---AMV-----AGCDGIVHLGGI 74 (267)
T ss_dssp EEEEEES-TTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHH---HHH-----TTCSEEEECCSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHH---HHH-----cCCCEEEECCCC
Confidence 3566555 468888888877643 45799999887543 357899999999875433 333 245999999876
Q ss_pred CCCCCc
Q 003302 122 NVGGAW 127 (832)
Q Consensus 122 nv~g~w 127 (832)
.....|
T Consensus 75 ~~~~~~ 80 (267)
T 3rft_A 75 SVEKPF 80 (267)
T ss_dssp CSCCCH
T ss_pred cCcCCH
Confidence 433333
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=86.60 E-value=1.6 Score=46.98 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC-----CC-CCceEEEccCCC-hhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA-----PI-RGAVSLEQDITK-PECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~-----~i-~~V~~i~gDIt~-~~~~~~l~~~L~~~~~~~ 111 (832)
+++|.+||=+|||+ |.++..+++.++. ..|++++.++-. .+ ..+.....+-.+ ......+.....+ ..
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g---~g 252 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG---IE 252 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS---CC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC---CC
Confidence 57889999899865 4455566666542 249999987521 11 233333333222 2333344433322 45
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|+-.. ++ . ..+..+..+|++||++++-
T Consensus 253 ~Dvvid~~----g~---~----------~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 253 PAVALECT----GV---E----------SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CSEEEECS----CC---H----------HHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECC----CC---h----------HHHHHHHHHhcCCCEEEEE
Confidence 79999642 11 1 2345678899999999973
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.44 E-value=4.4 Score=41.29 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... +
T Consensus 6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g 82 (252)
T 3h7a_A 6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--A 82 (252)
T ss_dssp CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--S
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--C
Confidence 46778877776 45555554433 235689999887532 1135788999999987665555544433 6
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++....
T Consensus 83 ~id~lv~nAg~~ 94 (252)
T 3h7a_A 83 PLEVTIFNVGAN 94 (252)
T ss_dssp CEEEEEECCCCC
T ss_pred CceEEEECCCcC
Confidence 789999998644
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=86.23 E-value=0.5 Score=51.31 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||=+|||+ |.++..+++.+ ++.|++++.++-. .--++..+. |-......+.+.....+ ..||+
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~v~~~~~g---~g~D~ 260 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFALGADHGI-NRLEEDWVERVYALTGD---RGADH 260 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHHTT---CCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHHcCCCEEE-cCCcccHHHHHHHHhCC---CCceE
Confidence 57899999999776 44555566665 4589999987521 001222111 22212333444444433 35799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+.... +. .+..++.+|++||++++.
T Consensus 261 vid~~g----~~--------------~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 261 ILEIAG----GA--------------GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp EEEETT----SS--------------CHHHHHHHEEEEEEEEEE
T ss_pred EEECCC----hH--------------HHHHHHHHhhcCCEEEEE
Confidence 996532 11 123577899999999974
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=1.5 Score=44.49 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.| |+|+++..++..+- .+..|++++.++-. .-.++.++.+|+++......+...+... .
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE-Y 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh-c
Confidence 356777555 56778777766542 35689999876421 0135888999999976554444433221 2
Q ss_pred CcccEEEeCCCCCCCCCch---hHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWA---QEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~---~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++++....+... .+.+.. ..-...+++.+...++++|.||+
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 136 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 136 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEE
Confidence 5679999997543222110 111110 11123445556666777788775
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.19 E-value=4.1 Score=42.65 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=45.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCC-------CC---CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPI-------AP---IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~-------~~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+++||=.| |+|+++.+++..+-. +..|++++..+. .. .+++.++.+|+++..... ..+
T Consensus 3 ~m~vlVTG-atG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~----- 73 (336)
T 2hun_A 3 SMKLLVTG-GMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVK---ELV----- 73 (336)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHH---HHH-----
T ss_pred CCeEEEEC-CCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHH---HHh-----
Confidence 46677666 567887777655421 368999987531 11 246889999999975433 223
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
..+|+|+|.+++
T Consensus 74 ~~~d~vih~A~~ 85 (336)
T 2hun_A 74 RKVDGVVHLAAE 85 (336)
T ss_dssp HTCSEEEECCCC
T ss_pred hCCCEEEECCCC
Confidence 235999998764
|
| >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=10 Score=40.98 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+|..||=+|+|||.+..+|+...+ ...+.+.||..+. .+.++|++++. +++..+...++..+.+.. =+
T Consensus 75 ~g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le~~~ni~li~~-ffde~~i~~l~~~~~~~~----vL 149 (348)
T 1vpt_A 75 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVDEEYLRSIKKQLHPSK----II 149 (348)
T ss_dssp TTCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCCHHHHHHHHHHHTTSC----EE
T ss_pred CCCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhcCCCcEEeehh-hcCHHHHHHHHHHhcCCC----EE
Confidence 467999999999999999988654 4578999999984 35677776654 667666666766665422 24
Q ss_pred EEeCCCCC-CCCC-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH-cccceEEecCCCCCCCC
Q 003302 115 VLHDGSPN-VGGA-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ-LFEKVEVDKPAASRSAS 191 (832)
Q Consensus 115 VlsDgapn-v~g~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~-~F~~V~~~KP~sSR~~S 191 (832)
.+||-... .++. +..+...-. .+-...+.+|+|-..++ =||.+-..... .. +.-.-...=|+..+..|
T Consensus 150 fISDIRS~~~~~Ep~~~dll~Dy----~lQn~w~~iLkP~aSmL--KFRlPyp~~~~---~~~yi~dG~~~Lqvwap~tS 220 (348)
T 1vpt_A 150 LISDVASAAGGNEPSTADLLSNY----ALQNVMISILNPVASSL--KWRCPFPDQWI---KDFYIPHGNKMLQPFAPSYS 220 (348)
T ss_dssp EEECCCC------CCHHHHHHHH----HHHHHHHHHHCCSEEEE--EECCCCGGGCC---CCEEEECCEEECCTTCCTTC
T ss_pred EEEecccCCCCCCccHHHHHHHH----HHHHHHHHHhhhHHHhc--cccCCCCCCCC---CceEeeCCCEEecccCCCCc
Confidence 45665321 1111 222211111 22234568899987765 24433212110 11 11122333467777889
Q ss_pred cceeEEEeeccCC
Q 003302 192 AEIYLLGIKYKAP 204 (832)
Q Consensus 192 aEiyvVc~gfk~p 204 (832)
+|..+|+..-.+|
T Consensus 221 tE~RLvv~~~~~~ 233 (348)
T 1vpt_A 221 AEMRLLSIYTGEN 233 (348)
T ss_dssp CCEEEEEECCTTC
T ss_pred ceEEEEEecCCCC
Confidence 9998887665544
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.11 E-value=8.7 Score=39.22 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=49.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.++- ....+.++.+|+++......+...+.. ..+.+|+|+++...
T Consensus 21 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~-~~g~iD~lv~nAg~ 97 (253)
T 2nm0_A 21 SRSVLVTGGN-RGIGLAIARAFADAGDKVAITYRSGE-PPEGFLAVKCDITDTEQVEQAYKEIEE-THGPVEVLIANAGV 97 (253)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSSC-CCTTSEEEECCTTSHHHHHHHHHHHHH-HTCSCSEEEEECSC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCChH-hhccceEEEecCCCHHHHHHHHHHHHH-HcCCCCEEEECCCC
Confidence 5678877765 56665555433 23568999887653 234588899999997655444433322 13677999998754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=86.00 E-value=1.6 Score=46.63 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCC--cCHHHHHHHHhCCCCCEEEEEeCCCCCC--C--CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAA--PGGWMQVAVQRVPVGSLVLGLDLVPIAP--I--RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcG--PGg~sq~La~~~p~~~~ViGVDLsp~~~--i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+||| -|..+..+++.+ ++.|++++.++-.. . -+...+ .|..+......+.....+ ..||
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lga~~~-~~~~~~~~~~~~~~~~~~---~g~D 215 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRLGAAYV-IDTSTAPLYETVMELTNG---IGAD 215 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHTCSEE-EETTTSCHHHHHHHHTTT---SCEE
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhCCCcEE-EeCCcccHHHHHHHHhCC---CCCc
Confidence 5789999999987 354555555554 45899999886421 0 122211 233333344445444332 3679
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+.... + .. +..++.+|++||++|+.
T Consensus 216 vvid~~g----~----~~----------~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 216 AAIDSIG----G----PD----------GNELAFSLRPNGHFLTI 242 (340)
T ss_dssp EEEESSC----H----HH----------HHHHHHTEEEEEEEEEC
T ss_pred EEEECCC----C----hh----------HHHHHHHhcCCCEEEEE
Confidence 9997531 1 10 11234799999999973
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=0.8 Score=54.20 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-------CC----CCEEEEEeCCCCC---------------------------CCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-------PV----GSLVLGLDLVPIA---------------------------PIRG 83 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-------p~----~~~ViGVDLsp~~---------------------------~i~~ 83 (832)
+.-+|+|+|.|+|.-..++.+.. |. ..++|+|+..|+. ++++
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999999766554432 11 2479999997642 1123
Q ss_pred c------------eEEEccCCChhHHHHHHHHHhhcc---CCcccEEEeCC-CCCC-CCCchhHHhHHhHHHHHHHHHHH
Q 003302 84 A------------VSLEQDITKPECRARVKKVMEEHG---VRAFDLVLHDG-SPNV-GGAWAQEAMSQNALVIDSVKLAT 146 (832)
Q Consensus 84 V------------~~i~gDIt~~~~~~~l~~~L~~~~---~~~FDlVlsDg-apnv-~g~w~~D~~~q~~L~~~aLk~A~ 146 (832)
| +.+.||+.+ .|.... .+.||.++.|| +|.. ...|..+- +..+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~---------~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~----------~~~l~ 198 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNT---------LLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQL----------FNAMA 198 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHH---------HGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHH----------HHHHH
T ss_pred ceEEEecCCcEEEEEEccCHHH---------HHhhcccccCCceeEEEECCCCCCCChhhhhHHH----------HHHHH
Confidence 2 233455432 233221 25789999999 3332 23566543 33456
Q ss_pred hhcccCcEEEE
Q 003302 147 QFLAPKGTFVT 157 (832)
Q Consensus 147 ~~LkpGG~fV~ 157 (832)
++++|||+|.+
T Consensus 199 ~~~~~g~~~~t 209 (689)
T 3pvc_A 199 RMTRPGGTFST 209 (689)
T ss_dssp HHEEEEEEEEE
T ss_pred HHhCCCCEEEe
Confidence 79999999875
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.97 E-value=7.2 Score=40.18 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C---------------CCCceEEEccCCChhHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P---------------IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~---------------i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.+... . -.++.++++|+++......+...
T Consensus 5 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 5 SGKTLFITGAS-RGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788878877 55555444433 235689999887531 1 12477899999998765555444
Q ss_pred HhhccCCcccEEEeCCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapn 122 (832)
+... .+.+|+|+++....
T Consensus 84 ~~~~-~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 84 TVDT-FGGIDILVNNASAI 101 (274)
T ss_dssp HHHH-HSCCCEEEECCCCC
T ss_pred HHHH-cCCCCEEEECCCcc
Confidence 3322 25779999998643
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=85.79 E-value=2.8 Score=43.95 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++.| |++..++..+ ..+..|+.++.++-. ....+.++++|+++......+...+... ++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g 108 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK-WG 108 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH-TS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh-cC
Confidence 4678898998754 3444443322 235689888877310 1246888999999987655555444332 26
Q ss_pred cccEEEeCCCCCC-----CCCc--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNV-----GGAW--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv-----~g~w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++..... +..+ ..+.+.. ..-...+++.+...|+.+|.+|.
T Consensus 109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~ 167 (293)
T 3grk_A 109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILT 167 (293)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 7899999976432 1111 1111111 11123445666777788999886
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=5.9 Score=41.21 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.|.++|=-|++.| ++..++..+ ..++.|+.++.+.....+...++++|+++......+...+.. .++++|+++++..
T Consensus 10 ~GK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~G~iDilVnnAG 87 (261)
T 4h15_A 10 RGKRALITAGTKG-AGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQ-RLGGVDVIVHMLG 87 (261)
T ss_dssp TTCEEEESCCSSH-HHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHH-HTSSCSEEEECCC
T ss_pred CCCEEEEeccCcH-HHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHH-HcCCCCEEEECCC
Confidence 5788887776654 555444332 246799999998766666777899999998766555544433 2378899999864
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=85.71 E-value=8.2 Score=40.06 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C---------------CCCceEEEccCCChhHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P---------------IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~---------------i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.+.-. . -.++.++++|+++......+...
T Consensus 8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46788878876 45555554433 346789999887531 1 13578899999998765544443
Q ss_pred HhhccCCcccEEEeCCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapn 122 (832)
+... .+.+|+|+++....
T Consensus 87 ~~~~-~g~id~lvnnAg~~ 104 (285)
T 3sc4_A 87 TVEQ-FGGIDICVNNASAI 104 (285)
T ss_dssp HHHH-HSCCSEEEECCCCC
T ss_pred HHHH-cCCCCEEEECCCCC
Confidence 3322 25779999998643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.49 E-value=2.4 Score=46.03 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCC--ChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDIT--KPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt--~~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||=+|||+ |.++..+++.++ ...|+++|.++-. .--++..+ .|.. +....+.+..... +.|
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~i~~~~~----gg~ 264 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKKFGVNEF-VNPKDHDKPIQEVIVDLTD----GGV 264 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHTTTCCEE-ECGGGCSSCHHHHHHHHTT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCcEE-EccccCchhHHHHHHHhcC----CCC
Confidence 57889999999865 445555565554 2379999988732 11133221 1222 2223333443322 367
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+-.. ++ ..++..+..+|++| |++++
T Consensus 265 D~vid~~----g~-------------~~~~~~~~~~l~~g~G~iv~ 293 (378)
T 3uko_A 265 DYSFECI----GN-------------VSVMRAALECCHKGWGTSVI 293 (378)
T ss_dssp SEEEECS----CC-------------HHHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECC----CC-------------HHHHHHHHHHhhccCCEEEE
Confidence 9999642 11 12345688999997 99987
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=85.24 E-value=9.9 Score=39.70 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------------------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------------------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+.+||=.|++. |++..++..+ ..+..|+.+|.++-. .-.++.++++|+++.....
T Consensus 27 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 27 EGKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 367888888765 4554444332 236789999876310 0135788999999987555
Q ss_pred HHHHHHhhccCCcccEEEeCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgap 121 (832)
.+...+... .+.+|+|+++...
T Consensus 106 ~~~~~~~~~-~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 106 AAVDDGVTQ-LGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHH-HSCCCEEEECCCC
T ss_pred HHHHHHHHH-hCCCCEEEECCCC
Confidence 444433221 2577999999754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=7 Score=39.99 Aligned_cols=79 Identities=10% Similarity=0.012 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC------------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI------------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~------------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++. |++..++..+ ..+..|+.++.++- .+-.++.++++|+++......+...+...
T Consensus 7 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 84 (265)
T 3lf2_A 7 SEAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT- 84 (265)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH-
Confidence 467888788764 5555544433 23668999988742 11224888999999987555444433321
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 85 ~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 85 LGCASILVNNAGQG 98 (265)
T ss_dssp HCSCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 25679999998643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=85.10 E-value=1.1 Score=47.82 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCC----CCCCc-eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIA----PIRGA-VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~----~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=+|||+++ ++..++..+. ++.|+++|.++-. ..-+. .++ |..+....+.+.....+ ..+|
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~~Ga~~~i--~~~~~~~~~~v~~~t~g---~g~d 234 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKKIGADVTI--NSGDVNPVDEIKKITGG---LGVQ 234 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHHTTCSEEE--EC-CCCHHHHHHHHTTS---SCEE
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhhcCCeEEE--eCCCCCHHHHhhhhcCC---CCce
Confidence 4789999999999865 3344444443 5799999988632 11122 222 33333344455554433 3457
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+.+.. + ..++..+..+|++||++++.
T Consensus 235 ~~~~~~~----~-------------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 235 SAIVCAV----A-------------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEECCS----C-------------HHHHHHHHHTEEEEEEEEEC
T ss_pred EEEEecc----C-------------cchhheeheeecCCceEEEE
Confidence 7776531 1 12345678999999999873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.04 E-value=4.3 Score=43.94 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC--hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK--PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~--~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|..+ ......+..... +.|
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~----~g~ 263 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVLSKMTN----GGV 263 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHHHHHHT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHhCCceE-EeccccchhHHHHHHHHhC----CCC
Confidence 57889999999765 444455556653 2289999987632 11133221 12221 122333333222 357
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+... ++ ...+..+..+|++| |++|+
T Consensus 264 D~vid~~----g~-------------~~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 264 DFSLECV----GN-------------VGVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp SEEEECS----CC-------------HHHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECC----CC-------------HHHHHHHHHHhhcCCcEEEE
Confidence 9999642 11 12345678999999 99987
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=85.03 E-value=0.78 Score=51.11 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHH-HhCCCCCEEEEEeCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAV-QRVPVGSLVLGLDLVP 77 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La-~~~p~~~~ViGVDLsp 77 (832)
+.++.+|||+||+.|.++..++ ...+..++|++++.+|
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p 262 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR 262 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 3788999999999999999888 5665557999999987
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=1.2 Score=47.53 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCC--cCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC-hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAA--PGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK-PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcG--PGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~-~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-.||+ -|..+..++... ++.|++++.++-. ..-++. ...|.++ ......+..... +.+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~----~~~ 215 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFD-AAFNYKTVNSLEEALKKASP----DGY 215 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCS-EEEETTSCSCHHHHHHHHCT----TCE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcCCc-EEEecCCHHHHHHHHHHHhC----CCC
Confidence 5788999999983 333333344443 4689999987421 001222 1235554 333333333221 467
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+.+.. + ..+..+..+|++||++++
T Consensus 216 d~vi~~~g----~--------------~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 216 DCYFDNVG----G--------------EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp EEEEESSC----H--------------HHHHHHHTTEEEEEEEEE
T ss_pred eEEEECCC----h--------------HHHHHHHHHHhcCCEEEE
Confidence 99998642 1 123467899999999987
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=84.68 E-value=6.4 Score=40.81 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=47.6
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
|++..+.++||=.| |+|+++.+++..+- .+..|++++..+.....++.++.+|+++.... ...+.. +.+|+|
T Consensus 6 ~~~~~~~~~vlVTG-atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~---~~~~~~---~~~d~v 78 (321)
T 2pk3_A 6 HHHHHGSMRALITG-VAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRV---KKVISD---IKPDYI 78 (321)
T ss_dssp -------CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHH---HHHHHH---HCCSEE
T ss_pred cccccCcceEEEEC-CCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHH---HHHHHh---cCCCEE
Confidence 45566777888555 56888877765542 35689999887532111788899999986543 333333 235999
Q ss_pred EeCCCC
Q 003302 116 LHDGSP 121 (832)
Q Consensus 116 lsDgap 121 (832)
+|.+++
T Consensus 79 ih~A~~ 84 (321)
T 2pk3_A 79 FHLAAK 84 (321)
T ss_dssp EECCSC
T ss_pred EEcCcc
Confidence 998764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=84.67 E-value=2.9 Score=44.41 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.||+ ||++..++..+ ..+..|++++.++-. .-..+.++.+|+++......+...+...
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~- 84 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR- 84 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence 35688878876 55555554433 236789999887521 0126888999999987655554444322
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 85 ~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 85 FGPVSILCNNAGVN 98 (319)
T ss_dssp TCCEEEEEECCCCC
T ss_pred CCCCCEEEECCCcC
Confidence 26789999998654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.61 E-value=4.9 Score=42.02 Aligned_cols=114 Identities=16% Similarity=0.043 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++..... .-.++.++++|+++......+...+...
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~- 125 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA- 125 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence 36788888865 56665555443 235688888876210 1235788899999976554444433221
Q ss_pred CCcccEEEeCCCCCC-CC-Cc--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNV-GG-AW--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv-~g-~w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.+|+|+++..... .+ .+ ..+.+.. . .-...+++.+...|+.+|.+|+
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~ 183 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT 183 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 256799999986432 11 11 1111111 1 1123445666777888999886
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.60 E-value=4 Score=42.88 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.||+ ||++..++..+ ..+..|++++.++-. .-.++.++++|+++......+...+... .+
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL-LG 107 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh-CC
Confidence 46788878876 55665554433 235689999887421 1236888999999987655444433221 25
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++....
T Consensus 108 ~id~lvnnAg~~ 119 (301)
T 3tjr_A 108 GVDVVFSNAGIV 119 (301)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 679999998644
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.41 E-value=5 Score=41.55 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++. ||++..++..+ ..+..|+.++.++-. ..+++.++.+|+++......+...+... .+
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g 98 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN-WG 98 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-TS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence 367888888863 77776665543 235689999876520 1235788999999976555444433321 26
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 99 ~iD~lv~~Ag~ 109 (285)
T 2p91_A 99 SLDIIVHSIAY 109 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 77999999864
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=84.36 E-value=1 Score=45.63 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=47.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|++ ||++..++..+..++.|++++.++- ..+.++.++.+|+++......+...+. ..+.+|+|++
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~id~lv~ 81 (245)
T 3e9n_A 5 KKIAVVTGAT-GGMGIEIVKDLSRDHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLK--NLDHVDTLVH 81 (245)
T ss_dssp -CEEEEESTT-SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGT--TCSCCSEEEE
T ss_pred CCEEEEEcCC-CHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHH--hcCCCCEEEE
Confidence 5677767754 6677777766655788999987742 235678889999887532111111121 1257899999
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
+....
T Consensus 82 ~Ag~~ 86 (245)
T 3e9n_A 82 AAAVA 86 (245)
T ss_dssp CC---
T ss_pred CCCcC
Confidence 98543
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=84.34 E-value=2.5 Score=51.99 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=64.7
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE-cCCCCHHHHHHHHH---HcccceEEecCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV-FRSQDYSSVLYCLK---QLFEKVEVDKPA 185 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV-Frs~d~~~ll~~L~---~~F~~V~~~KP~ 185 (832)
|.|-+|.+|.--.+.|.-..++.. ......|..|+.+..+||.+|+|| |... .-+-.+++ .+|..++++||.
T Consensus 569 Gtf~fVYSDvDQV~dgg~Dl~Aas--r~~~~~l~~~l~~tt~GG~~VvKiNFPT~--~~W~~lf~~~~~~~~s~~lvKP~ 644 (1289)
T 1ej6_A 569 GDYQFVYSDVDQVVDGHDDLSISS--GLVESLLSSCMHATAPGGSFVVKINFPTR--PVWHYIEQKILPNITSYMLIKPF 644 (1289)
T ss_dssp CCEEEEEECCCCCCSSSTTHHHHH--HHHHHHHHHHHHHEEEEEEEEEEESSCCH--HHHHHHHHHTGGGEEEEEEEEEE
T ss_pred cceEEEEechhhhhcCCCcchhhH--HHHHHHHHHHHHhhccCceEEEEEcCCCh--HHHHHHHHhhccccceeeeecce
Confidence 889999999754444544455443 456678889999999999999998 4432 22233444 447889999998
Q ss_pred CCCCCCcceeEEEeeccCC
Q 003302 186 ASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 186 sSR~~SaEiyvVc~gfk~p 204 (832)
-. .|.|+|+||-|+...
T Consensus 645 Iv--NnvEvflv~~~r~~~ 661 (1289)
T 1ej6_A 645 VT--NNVELFFVAFGVHQH 661 (1289)
T ss_dssp SS--SSCCEEEEEEEESCC
T ss_pred ee--cceEEEEEEEeeecC
Confidence 75 467999999999843
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=84.19 E-value=5.1 Score=41.39 Aligned_cols=114 Identities=13% Similarity=0.027 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|+ +||++..++..+ ..+..|++++.++.. .-.++.++.+|+++......+...+... +
T Consensus 28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~ 105 (283)
T 1g0o_A 28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI-F 105 (283)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence 3567876665 466666665543 235689998876521 0135788999999976554443333221 2
Q ss_pred CcccEEEeCCCCCCCC-Cc--hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGG-AW--AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g-~w--~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+ .+ ..+.+.. ..-...+++.+...|+.+|.+|+
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 161 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL 161 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 5679999998643222 11 1111111 01123345566666777888886
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=84.15 E-value=4 Score=44.21 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC--hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK--PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~--~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||=+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|..+ ....+.+..... +.|
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~v~~~~~----~g~ 266 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDC-LNPRELDKPVQDVITELTA----GGV 266 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHHHHHHT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCcEE-EccccccchHHHHHHHHhC----CCc
Confidence 56899999999765 444455566653 2389999987632 11133221 12221 122333333222 357
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+-.. ++ ...+..+..+|++| |++|+
T Consensus 267 Dvvid~~----G~-------------~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 267 DYSLDCA----GT-------------AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp SEEEESS----CC-------------HHHHHHHHHTBCTTTCEEEE
T ss_pred cEEEECC----CC-------------HHHHHHHHHHhhcCCCEEEE
Confidence 9999642 11 12345678999999 99987
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=84.11 E-value=6.6 Score=40.68 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... .+
T Consensus 31 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-~g 108 (276)
T 3r1i_A 31 SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE-LG 108 (276)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence 46788877766 55665554433 236689999887521 1136888999999987555444433221 25
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++....
T Consensus 109 ~iD~lvnnAg~~ 120 (276)
T 3r1i_A 109 GIDIAVCNAGIV 120 (276)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 779999998644
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=84.04 E-value=8.8 Score=39.71 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC----------CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP----------IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~----------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-.. -..+.++++|+++......+...+... +
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g 108 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--A 108 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--S
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--C
Confidence 46778866755 56665555443 2366899999876321 245888999999987665555544332 5
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++....
T Consensus 109 ~iD~lvnnAg~~ 120 (275)
T 4imr_A 109 PVDILVINASAQ 120 (275)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 679999998643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=83.97 E-value=0.74 Score=49.58 Aligned_cols=96 Identities=13% Similarity=0.204 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||=+|||+ |.++..+++.++ ...|+++|.++-. .--++..+ .|..+....+.+.....+ ..||+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~v~~~t~g---~g~D~ 238 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEYGATDI-INYKNGDIVEQILKATDG---KGVDK 238 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHHTCCEE-ECGGGSCHHHHHHHHTTT---CCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCceE-EcCCCcCHHHHHHHHcCC---CCCCE
Confidence 57889999999866 445555666554 2379999987521 00122211 122233333444444332 35799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+... ++. .++..+..+|+|||++++
T Consensus 239 v~d~~----g~~-------------~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 239 VVIAG----GDV-------------HTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp EEECS----SCT-------------THHHHHHHHEEEEEEEEE
T ss_pred EEECC----CCh-------------HHHHHHHHHHhcCCEEEE
Confidence 99632 110 134467889999999987
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.63 E-value=4.7 Score=41.53 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++-. .++++.++++|+++......+...+... .+.+|+
T Consensus 8 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD~ 85 (270)
T 1yde_A 8 AGKVVVVTGGG-RGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR-FGRLDC 85 (270)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH-HSCCCE
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH-cCCCCE
Confidence 35778877765 56665555443 235689999887421 2346888999999976554444333221 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 86 lv~nAg~ 92 (270)
T 1yde_A 86 VVNNAGH 92 (270)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=83.51 E-value=6.6 Score=39.97 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+.+||=.|+ +|+++..++..+ ..+..|++++.++-. ...++.++.+|+++......+...+... .+.
T Consensus 15 ~~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~ 92 (278)
T 2bgk_A 15 QDKVAIITGG-AGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK-HGK 92 (278)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH-HSC
T ss_pred cCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence 3578887776 567776665543 235689999876411 1126889999999977554444333221 156
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 93 id~li~~Ag~ 102 (278)
T 2bgk_A 93 LDIMFGNVGV 102 (278)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 7999998754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.47 E-value=11 Score=39.88 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------------------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------------------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.+|.+.-. .-..+.++++|+++.....
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 36778867765 55555554433 236789999876211 0135788999999987555
Q ss_pred HHHHHHhhccCCcccEEEeCCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
.+...+... ++.+|+|+++....
T Consensus 124 ~~~~~~~~~-~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 124 AVVDEALAE-FGHIDILVSNVGIS 146 (317)
T ss_dssp HHHHHHHHH-HSCCCEEEECCCCC
T ss_pred HHHHHHHHH-cCCCCEEEECCCCC
Confidence 444433221 26779999998643
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=9.4 Score=38.47 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC-------CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP-------IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~-------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++-.. -.++.++.+|+++......+...+... .+.+|
T Consensus 11 ~~k~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g~id 88 (265)
T 2o23_A 11 KGLVAVITGGA-SGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGK-FGRVD 88 (265)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHH-CCCCC
Confidence 35778878775 66666665543 2356899998875321 135888999999976554444333221 25679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 89 ~li~~Ag~ 96 (265)
T 2o23_A 89 VAVNCAGI 96 (265)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=83.30 E-value=4.2 Score=43.97 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC--hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK--PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~--~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|..+ ....+.+..... +.|
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~----~g~ 262 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGATEC-VNPQDYKKPIQEVLTEMSN----GGV 262 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHHHHHTT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCceE-ecccccchhHHHHHHHHhC----CCC
Confidence 57889999999765 444455556653 2389999987632 11133221 12221 122233333221 357
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+.... + ...+..+..+|++| |++|+
T Consensus 263 D~vid~~g----~-------------~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 263 DFSFEVIG----R-------------LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp SEEEECSC----C-------------HHHHHHHHHHBCTTTCEEEE
T ss_pred cEEEECCC----C-------------HHHHHHHHHHhhcCCcEEEE
Confidence 99986421 1 12345678899999 99987
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=2.7 Score=49.39 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-------C----CCCEEEEEeCCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-------P----VGSLVLGLDLVPI 78 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-------p----~~~~ViGVDLsp~ 78 (832)
+.-+|||+|-|+|.-...+.+.. | ..-++++++.-|+
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~ 113 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPL 113 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCC
Confidence 34589999999999665554432 1 1236999999664
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=6.7 Score=40.48 Aligned_cols=80 Identities=9% Similarity=-0.028 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhC-CCCCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRV-PVGSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~-p~~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+.+||=.|++. +|++..++..+ ..+..|+.++.+... ..+++.++++|+++......+...+... .+.
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g~ 103 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV-WDG 103 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH-CSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH-cCC
Confidence 357888888652 34554444332 235689999887621 2346889999999987655555444332 267
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|+++....
T Consensus 104 id~li~nAg~~ 114 (280)
T 3nrc_A 104 LDAIVHSIAFA 114 (280)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCccC
Confidence 89999998643
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.28 E-value=11 Score=40.65 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C---------------CCCceEEEccCCChhHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P---------------IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~---------------i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
.+.+||=.|++. |++..++..+ ..+..|+.++.+... . -..+.++++|+++......+...
T Consensus 44 ~gk~vlVTGas~-GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 44 AGCTVFITGASR-GIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCh-HHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 467888777764 5555444433 346789999877532 1 12477889999998765544444
Q ss_pred HhhccCCcccEEEeCCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapn 122 (832)
+... ++.+|+|+++....
T Consensus 123 ~~~~-~g~iDilVnnAG~~ 140 (346)
T 3kvo_A 123 AIKK-FGGIDILVNNASAI 140 (346)
T ss_dssp HHHH-HSCCCEEEECCCCC
T ss_pred HHHH-cCCCCEEEECCCCC
Confidence 3322 25679999998643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=10 Score=39.74 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.+++||=.| |+|+++.+++..+- .+..|++++..+. ..++++.++.+|+++...... .+... .+|+
T Consensus 19 ~~~~vlVTG-asG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~---~~~~~---~~D~ 91 (330)
T 2pzm_A 19 SHMRILITG-GAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLER---AFDSF---KPTH 91 (330)
T ss_dssp TCCEEEEET-TTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHH---HHHHH---CCSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHH---HHhhc---CCCE
Confidence 467888777 45777777765442 3568999988542 223678899999999754332 23211 4599
Q ss_pred EEeCCCCC
Q 003302 115 VLHDGSPN 122 (832)
Q Consensus 115 VlsDgapn 122 (832)
|+|.+++.
T Consensus 92 vih~A~~~ 99 (330)
T 2pzm_A 92 VVHSAAAY 99 (330)
T ss_dssp EEECCCCC
T ss_pred EEECCccC
Confidence 99998654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=83.21 E-value=0.93 Score=49.39 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||=+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|..+......+..... ...+.||+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~i~~~~~-~~~gg~Dv 256 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEEVGATAT-VDPSAGDVVEAIAGPVG-LVPGGVDV 256 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHTCSEE-ECTTSSCHHHHHHSTTS-SSTTCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCCCEE-ECCCCcCHHHHHHhhhh-ccCCCCCE
Confidence 57899999999865 445555666654 2389999987621 00122211 13333332233322100 11146799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+-.. ++ ...+..+..+|++||++|+.
T Consensus 257 vid~~----G~-------------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 257 VIECA----GV-------------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEECS----CC-------------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEECC----CC-------------HHHHHHHHHHhccCCEEEEE
Confidence 99642 11 12345678999999999973
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=3.6 Score=42.10 Aligned_cols=78 Identities=12% Similarity=-0.022 Sum_probs=51.3
Q ss_pred CCEEEEEcCCc-CHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAP-GGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGP-Gg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++. |+++..++..+ ..+..|+.++.++-. ..+++.++++|+++......+...+.. ..+.
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~g~ 87 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK-VWPK 87 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT-TCSS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHH-HcCC
Confidence 56788888763 77776665543 235689999887610 113457889999998755544443332 2367
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 88 iD~lv~~Ag~ 97 (265)
T 1qsg_A 88 FDGFVHSIGF 97 (265)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999999864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=1.3 Score=47.23 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCC--cCHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAA--PGGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcG--PGg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-.||+ -|..+..++... ++.|++++.++-. .--++.. ..|..+......+.... . +.|
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~-~---~~~ 219 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVEELGFDG-AIDYKNEDLAAGLKREC-P---KGI 219 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCCSE-EEETTTSCHHHHHHHHC-T---TCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHcCCCE-EEECCCHHHHHHHHHhc-C---CCc
Confidence 5789999988883 344444455554 4599999987521 1112221 12444444444444433 1 467
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+.... + ..+..+..+|++||++|+
T Consensus 220 d~vi~~~g----~--------------~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 220 DVFFDNVG----G--------------EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp EEEEESSC----H--------------HHHHHHHTTEEEEEEEEE
T ss_pred eEEEECCC----c--------------chHHHHHHHHhhCCEEEE
Confidence 99997532 1 134567899999999987
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.01 E-value=7.1 Score=40.22 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|++ ||++..++..+ ..+..|+.++.+.- ....++.++++|+++......+...+... .+.+|+|++
T Consensus 16 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD~lvn 93 (266)
T 3p19_A 16 KKLVVITGAS-SGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKI-YGPADAIVN 93 (266)
T ss_dssp CCEEEEESTT-SHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHH-HCSEEEEEE
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHH-CCCCCEEEE
Confidence 5678877765 56665555443 23568999988741 12346888999999976555444433221 257899999
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
+....
T Consensus 94 nAg~~ 98 (266)
T 3p19_A 94 NAGMM 98 (266)
T ss_dssp CCCCC
T ss_pred CCCcC
Confidence 98644
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.01 E-value=5.6 Score=40.52 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. . -..+.++++|+++......+...+... .+.+|
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g~id 84 (259)
T 4e6p_A 7 EGKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEH-AGGLD 84 (259)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH-SSSCC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHH-cCCCC
Confidence 35778877755 66666555443 235689999876421 1 135788999999987554444433222 36789
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 85 ~lv~~Ag~~ 93 (259)
T 4e6p_A 85 ILVNNAALF 93 (259)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCcC
Confidence 999998643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=3.7 Score=44.44 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCC--hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITK--PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~--~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||=+|||+ |.++..+++.++ ...|++++.++-. .--++..+ .|..+ ....+.+..... +.|
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~i~~~t~----gg~ 262 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELGATEC-LNPKDYDKPIYEVICEKTN----GGV 262 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHHHHHTT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCcEE-EecccccchHHHHHHHHhC----CCC
Confidence 57899999999765 334444555543 2389999987632 11133221 12221 122233333222 357
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+-.. ++ ...+..+..+|++| |++|+
T Consensus 263 Dvvid~~----g~-------------~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 263 DYAVECA----GR-------------IETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp SEEEECS----CC-------------HHHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECC----CC-------------HHHHHHHHHHHhcCCCEEEE
Confidence 9999642 11 12345678999999 99987
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.89 E-value=11 Score=38.83 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC----------C-------------CCCCceEEEccCCChhHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI----------A-------------PIRGAVSLEQDITKPECR 97 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~----------~-------------~i~~V~~i~gDIt~~~~~ 97 (832)
.+.+||=.|++. |++..++..+ ..+..|+.+|...- . .-..+.++++|+++....
T Consensus 10 ~~k~~lVTGas~-GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 10 EGRVAFITGAAR-GQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCcc-HHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 367888788665 4554444332 23678999987421 0 113578899999998755
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
..+...+... .+.+|+|+++....
T Consensus 89 ~~~~~~~~~~-~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 89 RKVVDDGVAA-LGRLDIIVANAGVA 112 (277)
T ss_dssp HHHHHHHHHH-HSCCCEEEECCCCC
T ss_pred HHHHHHHHHH-cCCCCEEEECCCCC
Confidence 5444433221 25679999998644
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=82.80 E-value=2.4 Score=45.31 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||-+|||+ |..+..+++.+ +..|++++.++-. .--++..+ .|..+......+.... +.||+
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~-----~~~d~ 233 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKV-----GGVHA 233 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHH-----SSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHh-----CCCCE
Confidence 57899999999965 33444455555 4599999987521 01122221 2444333333333322 35799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+.... + . ..+..+..+|++||+|++
T Consensus 234 vid~~g----~---~----------~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 234 AVVTAV----S---K----------PAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp EEESSC----C---H----------HHHHHHHHHEEEEEEEEE
T ss_pred EEECCC----C---H----------HHHHHHHHHhhcCCEEEE
Confidence 997532 1 0 234567889999999987
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.80 E-value=11 Score=37.28 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=49.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CC--CEEEEEeCCCCC-----C--CCCceEEEccCCChhHHHHHHHHHhhccCC--
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VG--SLVLGLDLVPIA-----P--IRGAVSLEQDITKPECRARVKKVMEEHGVR-- 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~--~~ViGVDLsp~~-----~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~-- 110 (832)
+.+||=.|+ +|+++..++..+- .+ ..|++++.++.. . -.++.++.+|+++......+...+... .+
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g~~ 80 (250)
T 1yo6_A 3 PGSVVVTGA-NRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEI-VGSD 80 (250)
T ss_dssp CSEEEESSC-SSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHH-HGGG
T ss_pred CCEEEEecC-CchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHh-cCCC
Confidence 456776665 5777777666542 34 689999887521 1 236889999999976554444333221 12
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|++++...
T Consensus 81 ~id~li~~Ag~~ 92 (250)
T 1yo6_A 81 GLSLLINNAGVL 92 (250)
T ss_dssp CCCEEEECCCCC
T ss_pred CCcEEEECCccc
Confidence 579999997543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=82.78 E-value=9.9 Score=39.33 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.|+++|=-|++.|. +..++..+ ..++.|+.+|++.-. .-.++.++++|+++....+.+... ++++|+++
T Consensus 10 ~GK~alVTGas~GI-G~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~-----~g~iDiLV 83 (242)
T 4b79_A 10 AGQQVLVTGGSSGI-GAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEA-----LPRLDVLV 83 (242)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHH-----CSCCSEEE
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHh-----cCCCCEEE
Confidence 58899988887664 44333322 246799999988632 234688899999997655444332 37789999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
+|...
T Consensus 84 NNAGi 88 (242)
T 4b79_A 84 NNAGI 88 (242)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.55 E-value=6.4 Score=40.86 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++. |++..++..+ ..+..|+.++.++-. . -..+.++++|+++......+...+... .+.+|
T Consensus 28 ~gk~vlVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD 105 (277)
T 3gvc_A 28 AGKVAIVTGAGA-GIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAA-FGGVD 105 (277)
T ss_dssp TTCEEEETTTTS-THHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHH-HSSCC
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHH-cCCCC
Confidence 367788777664 4554444332 236789999887421 1 135788999999987655444433221 25679
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 106 ~lvnnAg~~ 114 (277)
T 3gvc_A 106 KLVANAGVV 114 (277)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=82.51 E-value=9.1 Score=39.61 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=50.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.+||=-|++.| ++..++..+ ..++.|+.+|++.- ...+++.++++|+++......+....... +++.|+++
T Consensus 3 K~vlVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~-~g~iDiLV 80 (247)
T 3ged_A 3 RGVIVTGGGHG-IGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEK-LQRIDVLV 80 (247)
T ss_dssp CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHH-HSCCCEEE
T ss_pred CEEEEecCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEE
Confidence 45676677655 444443332 24679999998852 23567889999999987655544433222 27789999
Q ss_pred eCCCCC
Q 003302 117 HDGSPN 122 (832)
Q Consensus 117 sDgapn 122 (832)
++....
T Consensus 81 NNAG~~ 86 (247)
T 3ged_A 81 NNACRG 86 (247)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998544
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=82.32 E-value=3.4 Score=42.22 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCCEEEEEcCC-cCHHHHHHHHhCC-CCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAA-PGGWMQVAVQRVP-VGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcG-PGg~sq~La~~~p-~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ +|+++..++..+- .+..|++++.++-. ...++.++.+|+++......+...+... .+
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g 85 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA-FG 85 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence 35788888986 3777766655432 25689999876520 1234788999999976554444333221 25
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 86 ~iD~lv~~Ag~ 96 (261)
T 2wyu_A 86 GLDYLVHAIAF 96 (261)
T ss_dssp SEEEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 77999999864
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.21 E-value=6 Score=40.46 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++.| ++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... ++
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g 87 (264)
T 3ucx_A 10 TDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA-YG 87 (264)
T ss_dssp TTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-TS
T ss_pred CCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence 4678888887665 444333322 236789999887421 1236888999999987655554443322 26
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+|+++..
T Consensus 88 ~id~lv~nAg 97 (264)
T 3ucx_A 88 RVDVVINNAF 97 (264)
T ss_dssp CCSEEEECCC
T ss_pred CCcEEEECCC
Confidence 7899999974
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=82.08 E-value=2 Score=45.92 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCCCCC-EEEEEeCCCC-----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVPVGS-LVLGLDLVPI-----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p~~~-~ViGVDLsp~-----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+|.+||-+|||+ |.++..+++.+ +. .|++++.++- ..+ ... ..|..+....+.+.... . ..||+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l--a~~-v~~~~~~~~~~~~~~~~-~---~g~D~ 234 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY--ADR-LVNPLEEDLLEVVRRVT-G---SGVEV 234 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT--CSE-EECTTTSCHHHHHHHHH-S---SCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh--HHh-ccCcCccCHHHHHHHhc-C---CCCCE
Confidence 889999999854 33444455554 34 7999998752 122 211 12333333333343322 2 45799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+.... + ...+..+..+|++||++|+
T Consensus 235 vid~~g----~-------------~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 235 LLEFSG----N-------------EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp EEECSC----C-------------HHHHHHHHHHEEEEEEEEE
T ss_pred EEECCC----C-------------HHHHHHHHHHHhcCCEEEE
Confidence 996421 1 1234567889999999987
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=82.07 E-value=6.2 Score=40.25 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++.+|+++......+...+... .+
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g 105 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA-HG 105 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh-cC
Confidence 46788877765 66666655543 235689999887521 1235788999999987655444433221 25
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 67999999864
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=81.99 E-value=4.1 Score=42.86 Aligned_cols=69 Identities=20% Similarity=0.111 Sum_probs=45.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCC-------CC--CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIA-------PI--RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~-------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++||=.| |+|+++.+++..+- .+..|++++..+.. .+ +++.++.+|+++.... ...+ ..
T Consensus 5 ~~vlVTG-atG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~---~~~~-----~~ 75 (348)
T 1oc2_A 5 KNIIVTG-GAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELV---DKLA-----AK 75 (348)
T ss_dssp SEEEEET-TTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHH---HHHH-----TT
T ss_pred cEEEEeC-CccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHH---HHHh-----hc
Confidence 3567555 56888777665442 24689999876421 11 4788999999986533 3333 23
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|.+++
T Consensus 76 ~d~vih~A~~ 85 (348)
T 1oc2_A 76 ADAIVHYAAE 85 (348)
T ss_dssp CSEEEECCSC
T ss_pred CCEEEECCcc
Confidence 4999998764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.95 E-value=9.5 Score=38.92 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEE-eCCCC---------C-CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGL-DLVPI---------A-PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGV-DLsp~---------~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.+ +...- . .-..+.++++|+++......+...+... +
T Consensus 7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~ 84 (259)
T 3edm_A 7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK-F 84 (259)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-h
Confidence 46788877765 45555554433 235688887 43321 0 1235889999999987655444433321 2
Q ss_pred CcccEEEeCCCCC-CCC-C--chhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPN-VGG-A--WAQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapn-v~g-~--w~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++.... ..+ . ...+.+.. . .-...+++.+...|+++|.+|.
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~ 141 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVT 141 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5789999997532 111 1 11121111 1 1123445566667777888876
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.81 E-value=6.6 Score=39.58 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC-----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI-----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~-----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++- ..++++.++.+|+++......+... .+.+|+|+
T Consensus 6 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~~~id~lv 79 (246)
T 2ag5_A 6 GKVIILTAAA-QGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANE-----VERLDVLF 79 (246)
T ss_dssp TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHH-----CSCCSEEE
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHH-----hCCCCEEE
Confidence 5677766654 56665555433 23568999988641 1234788899999997654433222 25679999
Q ss_pred eCCCCC
Q 003302 117 HDGSPN 122 (832)
Q Consensus 117 sDgapn 122 (832)
++....
T Consensus 80 ~~Ag~~ 85 (246)
T 2ag5_A 80 NVAGFV 85 (246)
T ss_dssp ECCCCC
T ss_pred ECCccC
Confidence 997643
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.78 E-value=4.2 Score=41.74 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=47.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------C--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------P--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. . -.++.++.+|+++......+...+...
T Consensus 6 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~- 83 (278)
T 1spx_A 6 EKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK- 83 (278)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH-
Confidence 5677766654 66766665543 235689999877410 1 124788999999976554443333221
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|+|+++...
T Consensus 84 ~g~id~lv~~Ag~ 96 (278)
T 1spx_A 84 FGKLDILVNNAGA 96 (278)
T ss_dssp HSCCCEEEECCC-
T ss_pred cCCCCEEEECCCC
Confidence 2567999999754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.76 E-value=1.7 Score=47.45 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCce-EEEccCC-ChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAV-SLEQDIT-KPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~-~i~gDIt-~~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-+|||+ |.++..+++.++ ...|++++.++-. .--++. ++....+ +....+.+.....+ ..|
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g---~g~ 268 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG---RGA 268 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT---SCE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCC---CCC
Confidence 57899999999654 333444555543 1489999987521 111222 2222111 22223334333222 257
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+.... +. ..+..+..+|++||++|+
T Consensus 269 Dvvid~~g----~~-------------~~~~~~~~~l~~~G~iv~ 296 (380)
T 1vj0_A 269 DFILEATG----DS-------------RALLEGSELLRRGGFYSV 296 (380)
T ss_dssp EEEEECSS----CT-------------THHHHHHHHEEEEEEEEE
T ss_pred cEEEECCC----CH-------------HHHHHHHHHHhcCCEEEE
Confidence 99996431 10 123467889999999987
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.68 E-value=4.6 Score=41.66 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCCh-hHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKP-ECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~-~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++ ||++..++..+ ..+..|++++.+.-. ...++.++.+|+++. .....+...+...
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~- 88 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH- 88 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH-
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh-
Confidence 45678866665 66666555443 236689999887421 123688999999997 6555555444322
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 89 ~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 89 FGKLDILVNNAGVA 102 (311)
T ss_dssp HSSCCEEEECCCCC
T ss_pred CCCCCEEEECCccc
Confidence 25679999998643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.68 E-value=1.8 Score=46.74 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCC--cCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAA--PGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcG--PGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-+||+ -|..+..++... ++.|++++.++-. .--++.. ..|..+......+...... ..||
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~ga~~-~~d~~~~~~~~~~~~~~~~---~~~D 241 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHE-VFNHREVNYIDKIKKYVGE---KGID 241 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSE-EEETTSTTHHHHHHHHHCT---TCEE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHHcCCCE-EEeCCCchHHHHHHHHcCC---CCcE
Confidence 5789999999973 233333444444 4689999987521 0012221 2244444444444443332 3579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... + ..+..++.+|++||++|+
T Consensus 242 ~vi~~~G----~--------------~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 242 IIIEMLA----N--------------VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp EEEESCH----H--------------HHHHHHHHHEEEEEEEEE
T ss_pred EEEECCC----h--------------HHHHHHHHhccCCCEEEE
Confidence 9997531 1 123456789999999987
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.65 E-value=11 Score=38.68 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. . -.++.++++|+++......+...+... ++.+|
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~id 87 (271)
T 3tzq_B 10 ENKVAIITGAC-GGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDT-FGRLD 87 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHH-cCCCC
Confidence 36788877765 55555554433 235689999987632 1 135888999999976555444433221 25779
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 88 ~lv~nAg~~ 96 (271)
T 3tzq_B 88 IVDNNAAHS 96 (271)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998643
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=81.65 E-value=14 Score=37.66 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.++|=-|++.+ |++..++..+ ..++.|+.++.+.-. .-+++.++++|+++......+...+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD- 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 4788888898652 4444433322 236789999887421 1246889999999976554444333221
Q ss_pred CCcccEEEeCCCCCCCC----C---chhHHhHHh-----HHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGG----A---WAQEAMSQN-----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g----~---w~~D~~~q~-----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++.+|+++++....... . ...+.+... ..+....+.+..+++.||.+|.
T Consensus 84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVn 144 (256)
T 4fs3_A 84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVA 144 (256)
T ss_dssp HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEE
T ss_pred hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 27789999986532111 0 011222110 1112334456677888999886
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=7.2 Score=40.40 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... .+.+|
T Consensus 4 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD 81 (281)
T 3zv4_A 4 TGEVALITGGA-SGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAA-FGKID 81 (281)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHh-cCCCC
Confidence 35778878876 45555554433 235789999877421 1135888999999976554444433221 26779
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 82 ~lvnnAg~ 89 (281)
T 3zv4_A 82 TLIPNAGI 89 (281)
T ss_dssp EEECCCCC
T ss_pred EEEECCCc
Confidence 99999754
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.46 E-value=3.9 Score=41.49 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeC-CCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDL-VPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDL-sp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|+ +|+++..++..+- .+..|++++. ++-. .-.++.++.+|+++......+...+... .
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~ 97 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH-F 97 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH-c
Confidence 4667885664 5777776665442 3568998887 3210 0235788999999976554443333221 2
Q ss_pred CcccEEEeCCCCCCCCCc---hhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAW---AQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w---~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+.. ..+.+.. ..-...+++.+...++.||.||+
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~ 153 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIIL 153 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 567999998754322211 1111110 01122334455566666788876
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.44 E-value=3.2 Score=42.92 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=48.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CC---CceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IR---GAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~---~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+||=.|+ +|+++..++..+ ..+..|++++.++-. . -. ++.++.+|+++......+...+...
T Consensus 6 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 83 (280)
T 1xkq_A 6 NKTVIITGS-SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ- 83 (280)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh-
Confidence 567776675 456665555433 235689999887421 1 11 5788999999986554444333221
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|+|+++...
T Consensus 84 ~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 84 FGKIDVLVNNAGA 96 (280)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2567999999854
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.42 E-value=14 Score=37.72 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .+ .++.++++|+++......+...+... .+.+|+
T Consensus 6 ~k~vlITGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g~iD~ 83 (263)
T 2a4k_A 6 GKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE-FGRLHG 83 (263)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH-HSCCCE
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHH-cCCCcE
Confidence 5678877764 56666555443 235689999887421 12 36788999999976554443333221 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 84 lvnnAg~ 90 (263)
T 2a4k_A 84 VAHFAGV 90 (263)
T ss_dssp EEEGGGG
T ss_pred EEECCCC
Confidence 9999753
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=81.30 E-value=5.2 Score=41.13 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+||=.| |+|+++.+++..+ ..+..|++++.++-. . -.++.++++|+++......+...+... .+.+|+
T Consensus 5 ~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~g~id~ 82 (281)
T 3m1a_A 5 AKVWLVTG-ASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLAR-YGRVDV 82 (281)
T ss_dssp CCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHH-HSCCSE
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHh-CCCCCE
Confidence 45677555 4577776665543 235689999887522 1 246889999999976554444333221 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++++.
T Consensus 83 lv~~Ag~ 89 (281)
T 3m1a_A 83 LVNNAGR 89 (281)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9999864
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.26 E-value=4.4 Score=41.59 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... .
T Consensus 19 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~ 96 (266)
T 4egf_A 19 DGKRALITGAT-KGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA-F 96 (266)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH-c
Confidence 46778866665 55665555443 236689999887421 1235889999999987555444433221 2
Q ss_pred CcccEEEeCCCCC
Q 003302 110 RAFDLVLHDGSPN 122 (832)
Q Consensus 110 ~~FDlVlsDgapn 122 (832)
+.+|+|+++....
T Consensus 97 g~id~lv~nAg~~ 109 (266)
T 4egf_A 97 GGLDVLVNNAGIS 109 (266)
T ss_dssp TSCSEEEEECCCC
T ss_pred CCCCEEEECCCcC
Confidence 5679999998643
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.21 E-value=7.4 Score=39.58 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. ...++.++.+|+++......+...+...
T Consensus 6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 35678877776 45554444332 225689999887421 1256889999999976554444433221
Q ss_pred cCCcccEEEeCCCCC
Q 003302 108 GVRAFDLVLHDGSPN 122 (832)
Q Consensus 108 ~~~~FDlVlsDgapn 122 (832)
.+.+|+|+++....
T Consensus 85 -~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 85 -YGAVDILVNAAAMF 98 (250)
T ss_dssp -HCCEEEEEECCCCC
T ss_pred -cCCCCEEEECCCcC
Confidence 26789999998654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.06 E-value=7 Score=40.52 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.+||=.|+ +|+++..++..+ ..+..|++++.++-. .-.++.++++|+++......+...+..
T Consensus 18 ~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 96 (303)
T 1yxm_A 18 GQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 96 (303)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence 578887775 577776665543 235689999876410 123588999999997655444333322
Q ss_pred ccCCcccEEEeCCCC
Q 003302 107 HGVRAFDLVLHDGSP 121 (832)
Q Consensus 107 ~~~~~FDlVlsDgap 121 (832)
. .+.+|+|++++..
T Consensus 97 ~-~g~id~li~~Ag~ 110 (303)
T 1yxm_A 97 T-FGKINFLVNNGGG 110 (303)
T ss_dssp H-HSCCCEEEECCCC
T ss_pred H-cCCCCEEEECCCC
Confidence 1 1567999999864
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=80.94 E-value=6 Score=40.32 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+... .+
T Consensus 11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g 88 (256)
T 3gaf_A 11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ-FG 88 (256)
T ss_dssp TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence 46788877765 45555444432 225689999887421 1246888999999986555444433221 25
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++....
T Consensus 89 ~id~lv~nAg~~ 100 (256)
T 3gaf_A 89 KITVLVNNAGGG 100 (256)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 679999998543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.85 E-value=15 Score=37.64 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC----------C-------------CCCCceEEEccCCChhHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI----------A-------------PIRGAVSLEQDITKPECR 97 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~----------~-------------~i~~V~~i~gDIt~~~~~ 97 (832)
.+.+||=.|++. |++..++..+ ..+..|+++|...- . .-..+.++++|+++....
T Consensus 14 ~gk~~lVTGas~-gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 14 QGRVAFITGAAR-GQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 467888788764 5555444433 23678999987420 0 113578899999998655
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
..+...+... .+.+|+|+++....
T Consensus 93 ~~~~~~~~~~-~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 93 RELVADGMEQ-FGRLDVVVANAGVL 116 (280)
T ss_dssp HHHHHHHHHH-HCCCCEEEECCCCC
T ss_pred HHHHHHHHHH-cCCCCEEEECCCCC
Confidence 5444433221 25779999998643
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=80.81 E-value=5.7 Score=40.79 Aligned_cols=78 Identities=19% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-.++.++.+|+++......+...+... .+.+|+|+
T Consensus 27 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD~lv 104 (260)
T 3gem_A 27 SAPILITGAS-QRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQ-TSSLRAVV 104 (260)
T ss_dssp CCCEEESSTT-SHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHH-CSCCSEEE
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHh-cCCCCEEE
Confidence 5677766755 66666555443 235689999887632 1125788999999987655554444322 26789999
Q ss_pred eCCCCC
Q 003302 117 HDGSPN 122 (832)
Q Consensus 117 sDgapn 122 (832)
++....
T Consensus 105 ~nAg~~ 110 (260)
T 3gem_A 105 HNASEW 110 (260)
T ss_dssp ECCCCC
T ss_pred ECCCcc
Confidence 998643
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=9.5 Score=38.53 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++ -. .-.++.++++|+++......+...+... .+.+
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~i 83 (249)
T 2ew8_A 6 KDKLAVITGGA-NGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST-FGRC 83 (249)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-HSCC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH-cCCC
Confidence 35678877755 56666555443 2356899998876 11 1135788999999976554443333221 2567
Q ss_pred cEEEeCCCCC
Q 003302 113 DLVLHDGSPN 122 (832)
Q Consensus 113 DlVlsDgapn 122 (832)
|+|+++....
T Consensus 84 d~lv~nAg~~ 93 (249)
T 2ew8_A 84 DILVNNAGIY 93 (249)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999998643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=4.2 Score=43.93 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEEccCCC--hhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLEQDITK--PECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~gDIt~--~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||-+|||+ |.++..+++.++ ...|++++.++-.. --++..+ .|..+ ....+.+..... +.|
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~v~~~~~----~g~ 261 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFGATEC-INPQDFSKPIQEVLIEMTD----GGV 261 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHTCSEE-ECGGGCSSCHHHHHHHHTT----SCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCceE-eccccccccHHHHHHHHhC----CCC
Confidence 57899999999754 334444455543 23899999876321 0122211 12221 122233333222 357
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~ 157 (832)
|+|+... ++ ...+..+..+|++| |++|+
T Consensus 262 D~vid~~----g~-------------~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 262 DYSFECI----GN-------------VKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp SEEEECS----CC-------------HHHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECC----Cc-------------HHHHHHHHHhhccCCcEEEE
Confidence 9999642 11 12345678999999 99987
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.62 E-value=14 Score=38.02 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------------------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------------------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .-..+.++++|+++.....
T Consensus 9 ~~k~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 9 EGKTALITGGA-RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE 87 (281)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 36788878866 55665555443 236789999886311 1135788999999986555
Q ss_pred HHHHHHhhccCCcccEEEeCCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
.+...+... .+.+|+|+++....
T Consensus 88 ~~~~~~~~~-~g~id~lv~nAg~~ 110 (281)
T 3s55_A 88 SFVAEAEDT-LGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHH-HTCCCEEEECCCCC
T ss_pred HHHHHHHHh-cCCCCEEEECCCCC
Confidence 444433221 25679999998643
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=80.40 E-value=12 Score=37.26 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC----------CC-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI----------AP-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~----------~~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++- .. -.++.++.+|++++.....+...+... .+
T Consensus 2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~ 79 (250)
T 2cfc_A 2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ-FG 79 (250)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH-hC
Confidence 3567767754 67776665543 23568999987641 11 134788999999976554444333221 15
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 80 ~id~li~~Ag~ 90 (250)
T 2cfc_A 80 AIDVLVNNAGI 90 (250)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 67999999754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.35 E-value=8 Score=39.74 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. .+ .++.++++|+++......+...+. ..+.+|
T Consensus 29 ~~k~vlVTGas-~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~id 105 (281)
T 3ppi_A 29 EGASAIVSGGA-GGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAAN--QLGRLR 105 (281)
T ss_dssp TTEEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHT--TSSEEE
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH--HhCCCC
Confidence 35678877865 55555544433 236689999887421 11 358899999999876655555552 236789
Q ss_pred EEEeC
Q 003302 114 LVLHD 118 (832)
Q Consensus 114 lVlsD 118 (832)
+|+++
T Consensus 106 ~lv~~ 110 (281)
T 3ppi_A 106 YAVVA 110 (281)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 99998
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.15 E-value=9 Score=38.40 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. .-..+.++++|+++......+...+... .+.
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~ 82 (247)
T 3lyl_A 5 EKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAE-NLA 82 (247)
T ss_dssp TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH-cCC
Confidence 5677766754 66665554433 235689999887521 1246888999999987655554444332 367
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|+++....
T Consensus 83 id~li~~Ag~~ 93 (247)
T 3lyl_A 83 IDILVNNAGIT 93 (247)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998643
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.06 E-value=7 Score=40.49 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ ||++..++..+ ..+..|+.++.++-. . -..+.++++|+++......+...+... .+.+|
T Consensus 26 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD 103 (277)
T 4dqx_A 26 NQRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAK-WGRVD 103 (277)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH-cCCCC
Confidence 46788877866 55665554433 236689999887521 1 135788999999986555444433221 25679
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 104 ~lv~nAg~~ 112 (277)
T 4dqx_A 104 VLVNNAGFG 112 (277)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCcC
Confidence 999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 832 | ||||
| d1ej0a_ | 180 | c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric | 3e-42 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 3e-28 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Score = 149 bits (377), Expect = 3e-42
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP 80
G RSRA +KL ++ + V+DL AAPGGW Q V ++ ++ DL+P+ P
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP 60
Query: 81 IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVID 140
I G L+ D K ++E G +V+ D +PN+ G A + LV
Sbjct: 61 IVGVDFLQGDFRDELVM---KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVEL 117
Query: 141 SVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIK 200
++++ LAP G+FV KVF+ + + L ++ LF KV+V KP +SR+ S E+Y++
Sbjct: 118 ALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177
Query: 201 YK 202
K
Sbjct: 178 RK 179
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 111 bits (280), Expect = 3e-28
Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 18/191 (9%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGS-- 68
+ R +H SR S KL + + V+DL GGW V
Sbjct: 36 EGIKRGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVK 94
Query: 69 -LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAW 127
L G PI + + ++ + + V + E D +L D +
Sbjct: 95 GLTKGGPG-HEEPIPMS-TYGWNLVRLQSGVDVFFIPPER----CDTLLCDIGESSPNPT 148
Query: 128 AQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR--SQDYSSVLYCLKQLFEKVEVDKPA 185
+ + + L +L+ F KV + L++ V P
Sbjct: 149 VEA-----GRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP- 202
Query: 186 ASRSASAEIYL 196
SR+++ E+Y
Sbjct: 203 LSRNSTHEMYW 213
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 100.0 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 99.92 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.28 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.21 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.21 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.18 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.14 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.12 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.11 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.09 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.06 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.06 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.05 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.04 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.04 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.03 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.03 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.02 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.01 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.0 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.0 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.98 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.98 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.96 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.94 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.94 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.94 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.93 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.92 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.92 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.92 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.9 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.9 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.89 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.89 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.87 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.86 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.85 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.85 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.84 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.83 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.78 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.78 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.75 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.75 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.74 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.74 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.72 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.72 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.7 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.68 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.67 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.58 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.56 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.54 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.53 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.52 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.5 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.49 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.46 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.42 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.4 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.39 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.38 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.3 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.3 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.28 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.27 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.25 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.2 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.14 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.13 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.12 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.11 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.93 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.88 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.8 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.72 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.69 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.61 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.6 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.59 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.58 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.57 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.54 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.47 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.28 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.18 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.14 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.06 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.99 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.88 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.75 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.63 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.3 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.09 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.82 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.73 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.65 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.34 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.08 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.47 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 92.57 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.44 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.23 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.04 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.85 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.43 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.9 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.65 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.09 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.98 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.83 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 89.73 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.62 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.58 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 88.82 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 88.25 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.89 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.84 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.74 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 87.68 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.12 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 86.64 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 86.08 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.94 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 85.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 84.93 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.79 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 84.7 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.45 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 84.38 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.98 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 83.9 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 83.88 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.86 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.82 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.37 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.31 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.99 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.81 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.69 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 81.56 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.56 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 81.13 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.94 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.74 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.44 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-41 Score=337.74 Aligned_cols=180 Identities=32% Similarity=0.518 Sum_probs=171.0
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHH
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARV 100 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l 100 (832)
||||||||||+||+.+|++++++.+|||||||||||+|+++++++..+.|+|||+.||.+++++.++++|+++..+...+
T Consensus 1 GyrsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~ 80 (180)
T d1ej0a_ 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhh
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999998777666
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~ 180 (832)
...+.. +.||+|+|||+|+++|.+..|+..+..|+..+|..|.++|++||+||+|+|.+..+..|++.|..+|..|+
T Consensus 81 ~~~~~~---~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~ 157 (180)
T d1ej0a_ 81 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 157 (180)
T ss_dssp HHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE
T ss_pred hhhccC---cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEE
Confidence 655544 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCcceeEEEeeccC
Q 003302 181 VDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 181 ~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
++||.+||+.|+|+|+||+||++
T Consensus 158 ~~KP~aSR~~SsE~Ylv~~g~Kp 180 (180)
T d1ej0a_ 158 VRKPDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp EECCTTSCTTCCEEEEEEEEECC
T ss_pred EECCCCcccCCceEEEEEecCCC
Confidence 99999999999999999999985
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=99.92 E-value=2.4e-26 Score=236.75 Aligned_cols=172 Identities=21% Similarity=0.180 Sum_probs=131.5
Q ss_pred chHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC---CCCCCCC----
Q 003302 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV---PIAPIRG---- 83 (832)
Q Consensus 11 D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs---p~~~i~~---- 83 (832)
+.|.+.+...+|+||++|||.+|+++| ++.++..|||||||||||+++++...+ ...|.|+++- .+.|++.
T Consensus 36 ~~~~~~~~~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~P~~~~~~~ 113 (257)
T d2p41a1 36 EGIKRGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEEPIPMSTYG 113 (257)
T ss_dssp HHHHTTCCSSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCCCCSTT
T ss_pred HHHHhccccCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccCCccccccc
Confidence 334444445679999999999999998 778888999999999999999998854 3466677663 2233332
Q ss_pred --c-eEEEc-cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 84 --A-VSLEQ-DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 84 --V-~~i~g-DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+ .+... |++. + ..+.+|+|+||++|+ ++.|..++... +.+|.+|..+|+|||.|||||
T Consensus 114 ~ni~~~~~~~dv~~----------l---~~~~~D~vlcDm~es-s~~~~vd~~Rt----l~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 114 WNLVRLQSGVDVFF----------I---PPERCDTLLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp GGGEEEECSCCTTT----------S---CCCCCSEEEECCCCC-CSSHHHHHHHH----HHHHHHHHHHCCTTCEEEEEE
T ss_pred cccccchhhhhHHh----------c---CCCcCCEEEeeCCCC-CCCchhhhhhH----HHHHHHHHHHcccCCEEEEEE
Confidence 2 22222 3322 1 126679999999998 67788877654 456788999999999999999
Q ss_pred cCCCC--HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 160 FRSQD--YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 160 Frs~d--~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
|.+.. +...++.|++.|....+.+| +||+.++|+|+||.+..+
T Consensus 176 l~py~~~v~e~le~lq~~fgg~lVR~P-~SRnst~EmY~Vs~~~~n 220 (257)
T d2p41a1 176 LNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGN 220 (257)
T ss_dssp SCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCC
T ss_pred CCCCChHHHHHHHHHHHHhCCeeEcCC-CCccccceeEEeeccccc
Confidence 99654 66778899999999888888 999999999999887654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.28 E-value=1.9e-12 Score=130.86 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++||++|||||||+|.++..++.+. +.|+|||+++ | ..++++.++++|+.+.+ +.+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~--------~~~-- 80 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--------FPD-- 80 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--------SCT--
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc--------ccc--
Confidence 6899999999999999999999873 5899999996 2 13578999999998753 222
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
++||+|+|..+. .|..+ ...+|+.+.++|+|||+|++..+....
T Consensus 81 -~~fD~v~~~~~l----~~~~d-------~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 81 -DSFDIITCRYAA----HHFSD-------VRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp -TCEEEEEEESCG----GGCSC-------HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred -cccceeeeecee----ecccC-------HHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 789999997653 23333 246788999999999999987664443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.1e-11 Score=126.31 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
..+.+|||||||+|..+..++...| ...|+|+|+++.+ .+.+|.++++|+.+.- .+
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~---------~~--- 173 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AG--- 173 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TT---
T ss_pred ccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc---------CC---
Confidence 3467899999999999999999887 6799999999731 3567999999997631 22
Q ss_pred CcccEEEeCCCCCCCCCchh-------HH-------hHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-------EA-------MSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-------D~-------~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..||+|+||++......+.. ++ ..........+..+..+|+|||+|++.+ .......+..++...
T Consensus 174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~~q~~~v~~~l~~~ 252 (274)
T d2b3ta1 174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQQGEAVRQAFILA 252 (274)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSSCHHHHHHHHHHT
T ss_pred CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-CchHHHHHHHHHHHC
Confidence 57899999985332222211 00 0122445678889999999999999965 333456666666655
Q ss_pred -ccceEEecCCCCCCCCcceeEEEe
Q 003302 176 -FEKVEVDKPAASRSASAEIYLLGI 199 (832)
Q Consensus 176 -F~~V~~~KP~sSR~~SaEiyvVc~ 199 (832)
|..|.++|..+.+. ++|+++
T Consensus 253 gf~~i~~~kDl~g~~----R~v~~r 273 (274)
T d2b3ta1 253 GYHDVETCRDYGDNE----RVTLGR 273 (274)
T ss_dssp TCTTCCEEECTTSSE----EEEEEE
T ss_pred CCCeEEEEECCCCCc----eEEEEe
Confidence 99999999998874 777764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.21 E-value=7.1e-12 Score=125.31 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+|||||||+|.++..++.. ++.|+|||+++. ...+++.++++|+++.+ +.
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--------~~--- 78 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--------FT--- 78 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--------SC---
T ss_pred CCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccccccccccccccc--------cc---
Confidence 578999999999999999999877 358999999962 24678999999998853 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.++||+|+|..+. .|..+ ...+|+.+.++|+|||+|++..+..
T Consensus 79 ~~~fD~v~~~~~l----~~~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 79 DERFHIVTCRIAA----HHFPN-------PASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp TTCEEEEEEESCG----GGCSC-------HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccc----cccCC-------HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2789999998642 23333 2357889999999999999865544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.18 E-value=2.7e-11 Score=119.58 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.++.+|||||||+|.++..++... ..|+|||+++.. .+ .++.++++|+... +..
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~---------~~~ 117 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN---------VKD 117 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT---------CTT
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh---------hcc
Confidence 3578999999999999999998864 489999999631 23 3578899998763 112
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
+.||+|+++++... .. ..+..++..+.++|+|||.+++.+.....+..+...+...|..+..+
T Consensus 118 ---~~fD~Ii~~~p~~~----~~------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~ 180 (194)
T d1dusa_ 118 ---RKYNKIITNPPIRA----GK------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp ---SCEEEEEECCCSTT----CH------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred ---CCceEEEEcccEEe----cc------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEE
Confidence 67899999975321 11 12345678899999999999885555444556667778888777654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=7.2e-11 Score=120.23 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C--------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I--------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.||.+|||||||+|.++.+|+..+++.+.|+|||+++ + ...+++..+++|+..+... . ....
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~-------~-~~~~ 142 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY-------R-ALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-------T-TTCC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccc-------c-cccc
Confidence 68999999999999999999999998899999999997 2 1346788899998876421 1 1236
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.||+|++|.+.. + ....++..+.++|+|||.|++.++
T Consensus 143 ~vD~i~~d~~~~-------~------~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 143 KVDVIFEDVAQP-------T------QAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CEEEEEECCCST-------T------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEEEEcccc-------c------hHHHHHHHHHHhcccCCeEEEEEE
Confidence 789999986421 1 123467889999999999998765
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.12 E-value=2.8e-11 Score=122.87 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=79.1
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCCceEEEc
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRGAVSLEQ 89 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~V~~i~g 89 (832)
..|.....|-+..+ ..+. .++.+|||||||||.++..+++. +..|+|||+++ |. ...++.++++
T Consensus 18 ~~y~~~~~~~~~~~-~~~~--~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~ 91 (246)
T d1y8ca_ 18 VDYKKWSDFIIEKC-VENN--LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91 (246)
T ss_dssp CCHHHHHHHHHHHH-HTTT--CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred CCHHHHHHHHHHHH-HHhC--CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCccceeecc
Confidence 45666555532222 2232 34578999999999999999987 45899999997 31 2236899999
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+++..+ .+.||+|+|-+.. ..++....-...+|+.+.++|+|||.||+.+.
T Consensus 92 d~~~~~~------------~~~fD~i~~~~~~-------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 92 DISNLNI------------NRKFDLITCCLDS-------TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CGGGCCC------------SCCEEEEEECTTG-------GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhcc------------cccccccceeeee-------eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 9987531 1679999985321 11111112235678999999999999998664
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.11 E-value=3.3e-11 Score=125.20 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=78.4
Q ss_pred HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHH
Q 003302 30 LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECR 97 (832)
Q Consensus 30 Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~ 97 (832)
|+.......-+.++.+|||||||+|+++..|+... ++.|+|||+++.. .+ .+|.++++|+.+.+.
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~- 131 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC- 131 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccc-
Confidence 33333344457899999999999999999998874 4689999999721 23 468999999988541
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .++||+|+|..+. .|..+ ...+|+.+.++|+|||+|++..
T Consensus 132 -------~---~~sfD~V~~~~~l----~h~~d-------~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 132 -------E---DNSYDFIWSQDAF----LHSPD-------KLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp -------C---TTCEEEEEEESCG----GGCSC-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------c---ccccchhhccchh----hhccC-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 1 2789999997642 12222 2357889999999999999854
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=4.7e-11 Score=118.10 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++++.+|||||||+|.++..+++. +..|+|||+++ |. .-+.+.++++|+.+.+ +.
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~--------~~--- 99 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--------FE--- 99 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--------SC---
T ss_pred hcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccccccccccccccc--------cc---
Confidence 4678889999999999999999975 56899999996 21 1245788899998753 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+.||+|+|.... .|..+ .-...+|+.+.++|+|||+|++.++
T Consensus 100 ~~~fD~I~~~~~l----~~~~~-----~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 100 DKTFDYVIFIDSI----VHFEP-----LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp TTCEEEEEEESCG----GGCCH-----HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCceEEEEecch----hhCCh-----hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 2678999997542 22211 1134678899999999999998543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=5.8e-11 Score=120.71 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.||.+|||||||+|+++..+++..+ +.|+|||+++. . .+ .+|.++++|+.++. .
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~---------~-- 97 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV---------A-- 97 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC---------C--
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc---------c--
Confidence 57899999999999999999988753 69999999972 1 23 34899999998742 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||+|+|.++.. |..+. ..+|..+.++|+|||+|++..
T Consensus 98 -~~~fD~v~~~~~~~----~~~d~-------~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 98 -NEKCDVAACVGATW----IAGGF-------AGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp -SSCEEEEEEESCGG----GTSSS-------HHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCceeEEEEEehhh----ccCCH-------HHHHHHHHHHcCcCcEEEEEe
Confidence 27799999986532 22221 356788999999999999843
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.06 E-value=8.8e-11 Score=117.98 Aligned_cols=98 Identities=24% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++||.+|||||||||+.+.+++..+| .+.|+|||+++ +. ..+++.++.+|+..+... .....
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~--------~~~~~ 124 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY--------SGIVE 124 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT--------TTTCC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccc--------ccccc
Confidence 78999999999999999999999997 56999999997 21 246899999999986532 11224
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+|+|+++.+. +. + ...++..+.++|+|||.|++.+
T Consensus 125 ~vd~v~~~~~~-----~~-~-------~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 125 KVDLIYQDIAQ-----KN-Q-------IEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CEEEEEECCCS-----TT-H-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEecccC-----hh-h-------HHHHHHHHHHHhccCCeEEEEE
Confidence 57888887431 11 1 1346778999999999999855
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.7e-10 Score=117.68 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||+||||||.+.+++..+. ++.|+++|+++-. .+.++.+...|.+... .. ..
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~-------~~---~~ 169 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-------WC---GE 169 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH-------HH---TT
T ss_pred cccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch-------hc---cc
Confidence 6789999999999999999999876 5899999999743 2344444444433221 11 12
Q ss_pred CcccEEEeCCCCCCCCCchh--H---------HhHHhHHHHHHHHHHHhhcccCcEEEEEE---cCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ--E---------AMSQNALVIDSVKLATQFLAPKGTFVTKV---FRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~--D---------~~~q~~L~~~aLk~A~~~LkpGG~fV~KV---Frs~d~~~ll~~L~~~ 175 (832)
+.||.||+|+++...|.+.. + ......++...|..|..+|+|||++|..+ +..++-..+.++|+++
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~ 249 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 249 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence 57899999998776665422 1 11233667888999999999999999754 3445555556677664
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=1.9e-10 Score=116.10 Aligned_cols=97 Identities=25% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
..++.+|||||||||.++..+++. +..|+|||+++ |. .-.++.++++|+++++. .
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~------------~ 103 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------------K 103 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------------C
T ss_pred CCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccccchheehhhhhccc------------c
Confidence 356679999999999999999985 46899999997 32 12368999999987531 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+|-+.. ..|. + ..-...+|..+.++|+|||.|++.+
T Consensus 104 ~~fD~I~~~~~~---~~~~-~----~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 104 NEFDAVTMFFST---IMYF-D----EEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp SCEEEEEECSSG---GGGS-C----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchHhhhhhh---hhcC-C----hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 678999986421 1111 1 1123467889999999999999854
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.04 E-value=8.1e-11 Score=115.40 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||+|||+|+++..++.. .++|+|||+++- ..+ ++|.++++|+.+.. .
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~---------~-- 96 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL---------C-- 96 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH---------T--
T ss_pred CCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc---------c--
Confidence 578999999999999999999875 459999999972 123 57899999976532 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
....||+|++++... . ....+..+.++|+|||+||+..+...+...++..+..+.-.+.++
T Consensus 97 ~~~~~D~v~~~~~~~-----~---------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~~ 157 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGG-----E---------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (186)
T ss_dssp TSCCEEEEEESCCTT-----C---------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred ccCCcCEEEEeCccc-----c---------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEEE
Confidence 126789999987421 1 123566788999999999986554444455556666654444444
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.03 E-value=1.4e-09 Score=110.73 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C--------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I--------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++||.+|||||||+|.++.+++...| ++.|+|||+++ | ...+++.++.+|...+... .. ...
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~-------~~-~~~ 142 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY-------AN-IVE 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG-------TT-TCC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccc-------cc-ccc
Confidence 68999999999999999999999876 67999999997 2 1357788899998876421 11 113
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-CCCC--------HHHHHHHHHHc-ccceE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-RSQD--------YSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-rs~d--------~~~ll~~L~~~-F~~V~ 180 (832)
.+|+|+++.+ +..+ ...++..+.++|+|||.|++.+. ++.+ +..+...|... |.-++
T Consensus 143 ~v~~i~~~~~------~~~~-------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 143 KVDVIYEDVA------QPNQ-------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CEEEEEECCC------STTH-------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEeecccc------chHH-------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 4456666532 1111 23467789999999999998543 2221 23444555544 76665
Q ss_pred Eec-CCCCCCCCcceeEEEeeccC
Q 003302 181 VDK-PAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~gfk~ 203 (832)
..- .+..| ..++|.-.|++
T Consensus 210 ~idL~py~~----~H~~vvg~y~~ 229 (230)
T d1g8sa_ 210 EVDIEPFEK----DHVMFVGIWEG 229 (230)
T ss_dssp EEECTTTST----TEEEEEEEECC
T ss_pred EecCCCCcC----CeEEEEEEecC
Confidence 542 11222 25555555543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=1.4e-10 Score=123.31 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=93.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++|.+|||+||||||-+.+++..+...+.|+++|+++-. .+.++.++..|.+.... .
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~-----------~ 182 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-----------L 182 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-----------G
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc-----------c
Confidence 4689999999999999999999999988999999999621 35677777777665321 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHH-----------hHHhHHHHHHHHHHHhhcccCcEEEEEE---cCCCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEA-----------MSQNALVIDSVKLATQFLAPKGTFVTKV---FRSQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~-----------~~q~~L~~~aLk~A~~~LkpGG~fV~KV---Frs~d~~~ll~~L~~ 174 (832)
...||.|+.|+++...|.+...+ .....++...|..|..+|+|||++|..+ ++.++-..+.+++.+
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~ 262 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 262 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence 26799999999887766553221 1223567788999999999999999743 445565566677765
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 263 ~ 263 (313)
T d1ixka_ 263 F 263 (313)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.9e-10 Score=119.23 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++.+|||+|||+|.++..++...+ +..|+|||+++. . ..+++.++++|+++++. .+ +.||+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~--------~~---~sfD~ 150 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPF--------SD---TSMDA 150 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSB--------CT---TCEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhccC--------CC---CCEEE
Confidence 5678999999999999999998875 679999999972 1 35789999999998642 22 77899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
|++..+|.. +..+.++|+|||+|++.++.....
T Consensus 151 v~~~~~~~~------------------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 151 IIRIYAPCK------------------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp EEEESCCCC------------------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred EeecCCHHH------------------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 999765421 235678999999999977765543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=2.3e-10 Score=118.97 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=90.7
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------------CCCCCceEE
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------------APIRGAVSL 87 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------------~~i~~V~~i 87 (832)
|..-+++-+..++ +.||++|||+|||+|+++.+|+..+++.++|+++|+++- ....++.++
T Consensus 81 ypkD~s~Ii~~l~-----i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~ 155 (264)
T d1i9ga_ 81 YPKDAAQIVHEGD-----IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV 155 (264)
T ss_dssp CHHHHHHHHHHTT-----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred chHHHHHHHHHhC-----CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEE
Confidence 5556666555543 589999999999999999999999988999999999951 124578899
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS 167 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ 167 (832)
++|+.+.. +. .+.||.|++|.+ ..| .++..+.++|+|||+|++-+-.-.....
T Consensus 156 ~~d~~~~~--------~~---~~~fDaV~ldlp----~P~------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~ 208 (264)
T d1i9ga_ 156 VSDLADSE--------LP---DGSVDRAVLDML----APW------------EVLDAVSRLLVAGGVLMVYVATVTQLSR 208 (264)
T ss_dssp CSCGGGCC--------CC---TTCEEEEEEESS----CGG------------GGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred eccccccc--------cc---CCCcceEEEecC----CHH------------HHHHHHHhccCCCCEEEEEeCccChHHH
Confidence 99987632 12 277899999853 123 2355788999999999874422222344
Q ss_pred HHHHHH-H-cccceEE
Q 003302 168 VLYCLK-Q-LFEKVEV 181 (832)
Q Consensus 168 ll~~L~-~-~F~~V~~ 181 (832)
++..|. . .|..+.+
T Consensus 209 ~~~~l~~~~~f~~i~~ 224 (264)
T d1i9ga_ 209 IVEALRAKQCWTEPRA 224 (264)
T ss_dssp HHHHHHHHSSBCCCEE
T ss_pred HHHHHHHcCCeecceE
Confidence 455554 3 4766554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.00 E-value=5.5e-10 Score=111.86 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCC-CC-----------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVP-IA-----------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp-~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
++++.+|||||||||..+..+++... ++..|+|||+++ |. ....+.++.+|+.+.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~----------- 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 105 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----------
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-----------
Confidence 57899999999999999999998753 577999999997 31 2335677788876532
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|++.... +|.... -...+|+.+.++|+|||.|++..+
T Consensus 106 --~~~~d~i~~~~~l----~~~~~~-----d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 106 --IKNASMVILNFTL----QFLPPE-----DRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp --CCSEEEEEEESCG----GGSCGG-----GHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccceeeEEeeec----cccChh-----hHHHHHHHHHHhCCCCceeecccc
Confidence 2567999986431 222111 123678899999999999998643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.00 E-value=4.3e-10 Score=114.87 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|+.+..++... .+.|+|||+++- . ...++.++++|++.... .
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~--------~-- 89 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM--------D-- 89 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC--------C--
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc--------c--
Confidence 5789999999999999988888762 358999999972 1 12368899999965321 0
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
..+.||+|+|.++. +|.... ...+..+|..+.++|+|||.||+.++. ...+.+.+.
T Consensus 90 ~~~~fD~V~~~~~l----~~~~~~---~~~~~~~l~~i~~~Lk~gG~~i~~~~~---~~~i~~~~~ 145 (252)
T d1ri5a_ 90 LGKEFDVISSQFSF----HYAFST---SESLDIAQRNIARHLRPGGYFIMTVPS---RDVILERYK 145 (252)
T ss_dssp CSSCEEEEEEESCG----GGGGSS---HHHHHHHHHHHHHTEEEEEEEEEEEEC---HHHHHHHHH
T ss_pred ccccceEEEEccee----eecCCC---HHHHHHHHHHHhceeCCCCEEEEEecC---HHHHHHHHH
Confidence 12679999998653 222221 122456788999999999999986543 344444443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=5.9e-10 Score=115.21 Aligned_cols=113 Identities=22% Similarity=0.222 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|.+|||+|||+|.++..+++. +++|+|||+++.. .-.++.++++|+.+. +..
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~---------~~~--- 182 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---------LPF--- 182 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---------GGG---
T ss_pred cCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc---------ccc---
Confidence 468999999999999999887764 4689999999842 112457788876431 222
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
++||+|+++.. .+. +...+..+.++|+|||+|++.-+...+...+...+..+ |..+..
T Consensus 183 ~~fD~V~ani~--------~~~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 183 GPFDLLVANLY--------AEL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp CCEEEEEEECC--------HHH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred cccchhhhccc--------ccc------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence 67899999742 111 23455678899999999998755555566777777665 654443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=5.2e-10 Score=119.13 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.|.+|||||||||+++.+++.. +..|++||+++- +.+.++.++++|+.+... .+.. ...
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~------~~~~-~~~ 214 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR------RLEK-EGE 214 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH------HHHH-TTC
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh------hhHh-hhc
Confidence 5889999999999999988754 568999999962 245678999999876321 1211 126
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHH
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQ 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~ 174 (832)
.||+|++|++....+.. +..........++..+..+|+|||++++..... -+...+..++..
T Consensus 215 ~fD~Vi~DpP~~~~~~~--~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~ 277 (318)
T d1wxxa2 215 RFDLVVLDPPAFAKGKK--DVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAE 277 (318)
T ss_dssp CEEEEEECCCCSCCSTT--SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEcCCccccchH--HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHH
Confidence 79999999865433321 112222334567788999999999999865443 344555555444
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.96 E-value=2.1e-10 Score=119.66 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|.++..++..++.++.|+|||+++.. . -.++.++++|+..++. .
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~------------~ 92 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL------------N 92 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC------------S
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccc------------c
Confidence 4566899999999999999999998878899999999721 1 1268899999987531 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|+|.... .|..+. ..+|+.+.++|+|||+|++..
T Consensus 93 ~~fD~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 93 DKYDIAICHAFL----LHMTTP-------ETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp SCEEEEEEESCG----GGCSSH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEEehhh----hcCCCH-------HHHHHHHHHHcCcCcEEEEEE
Confidence 568999998642 222222 357889999999999999744
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.94 E-value=4.5e-10 Score=110.46 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.++.+| +|||||||+|.++..++++ +..|+|||+++. . .++++.+..+|+++..
T Consensus 27 ~~~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~----------- 91 (198)
T d2i6ga1 27 KVVAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT----------- 91 (198)
T ss_dssp TTSCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC-----------
T ss_pred ccCCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc-----------
Confidence 345665 8999999999999999987 468999999972 1 3567888899988743
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..+.||+|+|...+. +... ......|..+.++|+|||.|++..|..
T Consensus 92 -~~~~fD~I~~~~~~~----~~~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 92 -FDGEYDFILSTVVMM----FLEA-----QTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp -CCCCEEEEEEESCGG----GSCT-----THHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred -ccccccEEEEeeeee----cCCH-----HHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 126799999976432 1111 113467888999999999999866543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.94 E-value=9e-10 Score=113.58 Aligned_cols=92 Identities=14% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------------CCCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------------APIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++||++|||+|||+|+++..++..+++.++|+++|+++- ....++.+.++|+.+. +..
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~---------~~~- 152 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---------ISD- 152 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---------CCS-
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc---------ccc-
Confidence 689999999999999999999999887899999999961 1235789999998763 122
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++|.+ ..| .+|..+.++|+|||+|++-+
T Consensus 153 --~~fD~V~ld~p----~p~------------~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 153 --QMYDAVIADIP----DPW------------NHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp --CCEEEEEECCS----CGG------------GSHHHHHHTEEEEEEEEEEE
T ss_pred --ceeeeeeecCC----chH------------HHHHHHHHhcCCCceEEEEe
Confidence 67899999853 122 23567889999999998743
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=2.1e-10 Score=114.69 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC----CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++.+|||+|||||.++..++.. ++.|+|||+++ |.. .....++++|+.+++ +. .+.||+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~--------~~---~~~fD~ 105 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP--------FP---SGAFEA 105 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCC--------SC---TTCEEE
T ss_pred cCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccccccccccccccc--------cc---cccccc
Confidence 457789999999999999999875 56999999997 211 111235788888753 11 278999
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+|.+.. -+|..+ ...+|+.+.++|+|||.|++.+.
T Consensus 106 ii~~~~~---~~~~~d-------~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 106 VLALGDV---LSYVEN-------KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp EEECSSH---HHHCSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeecch---hhhhhh-------HHHHHHHHHhhcCcCcEEEEEEC
Confidence 9986421 012222 24578889999999999998663
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.93 E-value=1.4e-09 Score=116.02 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|.+|||||||+|+|+.+++.. + ...|++||+++. +.+ .++.++++|+.+.. .. +..
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~-----~~-~~~- 213 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM-----EK-LQK- 213 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-----HH-HHH-
T ss_pred cCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhh-----HH-HHh-
Confidence 578999999999999999998865 2 358999999972 123 35788999987532 11 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQ 174 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~ 174 (832)
...+||+|++|+++...+. .+...........+..|..+|+|||+|++..... -+...+..++..
T Consensus 214 ~~~~fD~Vi~DpP~~~~~~--~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~ 279 (324)
T d2as0a2 214 KGEKFDIVVLDPPAFVQHE--KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIA 279 (324)
T ss_dssp TTCCEEEEEECCCCSCSSG--GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCCchhcCCccccCCH--HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHH
Confidence 1167999999987554332 1222222334567888999999999999865443 245555555543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.92 E-value=9.3e-10 Score=105.78 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------C---------------CCCceEEEccCCChhH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------P---------------IRGAVSLEQDITKPEC 96 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~---------------i~~V~~i~gDIt~~~~ 96 (832)
++||.+|||+|||+|.++..|+.+ +..|+|||+|+. . . ...+.++++|+..+..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 578999999999999999999987 679999999962 1 0 1346788999987542
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. .. ..||+|++.... .+..+ .....++..+.++|+|||.|++..+
T Consensus 95 ~-------~~---~~~D~i~~~~~l----~~l~~-----~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 95 R-------DI---GHCAAFYDRAAM----IALPA-----DMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp H-------HH---HSEEEEEEESCG----GGSCH-----HHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred c-------cc---cceeEEEEEeee----Eecch-----hhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 1 11 567999987542 12211 1124567889999999999987554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=2.9e-09 Score=111.26 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=72.9
Q ss_pred hhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHH
Q 003302 32 QLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRAR 99 (832)
Q Consensus 32 qi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~ 99 (832)
.+.++.. +++|.+|||+|||+|+++.++++..+ +.|+|||+++.. .+. .+.+...|...+
T Consensus 43 ~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----- 114 (280)
T d2fk8a1 43 LNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----- 114 (280)
T ss_dssp HHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-----
T ss_pred HHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh-----
Confidence 3444443 68999999999999999999998754 599999999621 232 355566665542
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.++||.|++-++...-+.. .....++.+.++|+|||.|++...
T Consensus 115 ---------~~~fD~i~si~~~eh~~~~---------~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 115 ---------AEPVDRIVSIEAFEHFGHE---------NYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp ---------CCCCSEEEEESCGGGTCGG---------GHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---------ccchhhhhHhhHHHHhhhh---------hHHHHHHHHHhccCCCceEEEEEe
Confidence 1788999998753221110 123567889999999999998543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1e-09 Score=115.51 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++|.+|||+||||||.+.+++..+...+.|+|+|+++- ..+.++.++..|.+..... ...
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~--------~~~ 163 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS--------DPR 163 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT--------CGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc--------ccc
Confidence 367999999999999999999999888899999999852 1456788888887753211 011
Q ss_pred CCcccEEEeCCCCCCCCCchhHH-------------hHHhHHHHHHHHHHHhhcccCcEEEEEE---cCCCCHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEA-------------MSQNALVIDSVKLATQFLAPKGTFVTKV---FRSQDYSSVLYCL 172 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~-------------~~q~~L~~~aLk~A~~~LkpGG~fV~KV---Frs~d~~~ll~~L 172 (832)
.+.||.|+.|+++...|.+.... .....++...|..|. .|+|||++|..+ +..++...+.+++
T Consensus 164 ~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L 242 (293)
T d2b9ea1 164 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDAL 242 (293)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHH
T ss_pred cceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHH
Confidence 26789999999877666543211 112244556666676 579999999754 3445555556777
Q ss_pred HHc
Q 003302 173 KQL 175 (832)
Q Consensus 173 ~~~ 175 (832)
..+
T Consensus 243 ~~~ 245 (293)
T d2b9ea1 243 QQN 245 (293)
T ss_dssp TTS
T ss_pred HhC
Confidence 654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=3.3e-09 Score=111.26 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|.+|||||||.|+.+.+++... ++.|+||++++-. ...++.+..+|...++
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~------------ 125 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------------ 125 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------------
T ss_pred CCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc------------
Confidence 6899999999999999999988885 4799999999621 1346888888876532
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
++||.|++-++...-+... ....++.+.++|+|||.|++.++.
T Consensus 126 --~~fD~i~si~~~eh~~~~~---------~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 --EPVDRIVSIGAFEHFGHER---------YDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp --CCCSEEEEESCGGGTCTTT---------HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred --ccccceeeehhhhhcCchh---------HHHHHHHHHhhcCCCCcEEEEEEe
Confidence 6789999987643222111 134678899999999999986543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.90 E-value=2.4e-09 Score=113.98 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.+|.+|||||||+|+|+.+++.. ....|++||+++.. .+ .++.++++|+.+. +......
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~-----l~~~~~~ 214 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY-----FKYARRH 214 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-----HHHHHHT
T ss_pred hhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH-----HHHHHhh
Confidence 457899999999999999887764 23489999999731 22 4688999998653 2221111
Q ss_pred ccCCcccEEEeCCCCCCC---CCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC-CCCHHHHHHHHHHcc
Q 003302 107 HGVRAFDLVLHDGSPNVG---GAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR-SQDYSSVLYCLKQLF 176 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~---g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr-s~d~~~ll~~L~~~F 176 (832)
..+||+|++||+.... +.|.. ..-....+..|.++|+|||+|++.... ..+...+...+...|
T Consensus 215 --~~~fD~Ii~DPP~f~~~~~~~~~~-----~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~ 281 (317)
T d2b78a2 215 --HLTYDIIIIDPPSFARNKKEVFSV-----SKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGF 281 (317)
T ss_dssp --TCCEEEEEECCCCC-----CCCCH-----HHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred --cCCCCEEEEcChhhccchhHHHHH-----HHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHH
Confidence 1579999999863221 11111 112245677889999999999986653 345566666665544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=3.2e-10 Score=113.95 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||+|.++.++++.+++.+.|+++|+++- ..+.++.++++|+.... ..
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~--------~~--- 141 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV--------PE--- 141 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC--------GG---
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc--------cc---
Confidence 689999999999999999999999888899999999962 14678889999987532 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||+|++++++. +.++ .+.+.|+|||+||+-+
T Consensus 142 ~~~fD~I~~~~~~~----~~p~-------------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 FSPYDVIFVTVGVD----EVPE-------------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCEEEEEECSBBS----CCCH-------------HHHHHEEEEEEEEEEB
T ss_pred ccchhhhhhhccHH----HhHH-------------HHHHhcCCCcEEEEEE
Confidence 16799999987532 2222 2346799999999844
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=2.4e-09 Score=112.63 Aligned_cols=106 Identities=16% Similarity=0.033 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|++|||||||.|+++.+++...+ +.|+||++++-. .+. .+.+...|...+
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------------- 123 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------------- 123 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-------------
T ss_pred CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc-------------
Confidence 68999999999999999999988764 699999999631 233 356666665321
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
.++||.|+|.++...-+... ...........++.+.++|+|||.|++.++...
T Consensus 124 -~~~fD~i~sie~~eH~~~~~--~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 124 -DEPVDRIVSLGAFEHFADGA--GDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp -CCCCSEEEEESCGGGTTCCS--SCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred -ccccceEeechhHHhcchhh--hhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 17899999988643211100 000011124567889999999999999766543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=1.7e-09 Score=108.14 Aligned_cols=103 Identities=14% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++..|||||||+|.++..+|...| +..++|||+++. ..+.||.++++|+..+ ...+.. +
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l------~~~~~~---~ 98 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL------TDVFEP---G 98 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH------HHHCCT---T
T ss_pred CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh------hcccCc---h
Confidence 456899999999999999999976 679999999862 2567899999999863 223333 6
Q ss_pred cccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.||.|++..+. .|... +....-+....|..+.++|+|||.|++.
T Consensus 99 ~~d~v~i~fp~----P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 99 EVKRVYLNFSD----PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp SCCEEEEESCC----CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred hhhcccccccc----ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 67988876532 22221 1111111235678899999999999884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=2.2e-09 Score=106.39 Aligned_cols=124 Identities=17% Similarity=0.281 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+||.+..++..+| ++.|+|+|.++.. .. .++.++++++.+... .+.....
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~------~~~~~~~ 93 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF------LLKTLGI 93 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH------HHHHTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHH------HHHHcCC
Confidence 46889999999999999999999997 6899999999721 22 368899998877432 2233334
Q ss_pred CcccEEEeCCCCCCCCCchhHHh-HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAM-SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
..||.|+.|... +. +..+.. ........+|..+..+|+|||.+++..|.+.....+...+.
T Consensus 94 ~~vdgIl~DlGv--Ss-~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~ 155 (192)
T d1m6ya2 94 EKVDGILMDLGV--ST-YQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR 155 (192)
T ss_dssp SCEEEEEEECSC--CH-HHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcceeeeccch--hH-hhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence 788999999532 11 111111 12233467788999999999999998887754333333343
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=1.8e-09 Score=112.26 Aligned_cols=128 Identities=19% Similarity=0.272 Sum_probs=88.1
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEc
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQ 89 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~g 89 (832)
|-.-++|-+..++ ++||.+|||+|||+|+++.+++..++++++|+|+|+++-. .+ .++.+..+
T Consensus 88 ypkd~~~Ii~~l~-----i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~ 162 (266)
T d1o54a_ 88 YPKDSSFIAMMLD-----VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR 162 (266)
T ss_dssp CHHHHHHHHHHTT-----CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred chHHHHHHHHhhC-----CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence 5555555444332 6899999999999999999999999888999999999721 22 35666677
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL 169 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll 169 (832)
|+... + ....||.|++|.+ ..| .+|..+.++|+|||+|++-+........++
T Consensus 163 d~~~~---------~---~~~~~D~V~~d~p----~p~------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~ 214 (266)
T d1o54a_ 163 DISEG---------F---DEKDVDALFLDVP----DPW------------NYIDKCWEALKGGGRFATVCPTTNQVQETL 214 (266)
T ss_dssp CGGGC---------C---SCCSEEEEEECCS----CGG------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHH
T ss_pred ccccc---------c---cccceeeeEecCC----CHH------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHH
Confidence 76431 1 2266899999863 112 245678999999999997553333344455
Q ss_pred HHHHHc-ccceEEe
Q 003302 170 YCLKQL-FEKVEVD 182 (832)
Q Consensus 170 ~~L~~~-F~~V~~~ 182 (832)
..|... |..+.++
T Consensus 215 ~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 215 KKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHSSEEEEEEE
T ss_pred HHHHHCCceeEEEE
Confidence 556544 7666554
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=5.8e-10 Score=111.59 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
..++.+|||||||+|.++..++... ...|+|||+++ |. ..+++.++++|+++... .
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~-----------~ 124 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP-----------E 124 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC-----------C
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccc-----------c
Confidence 3567899999999999998876554 35899999997 21 23467899999987431 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|++..... +..+. ....+|+.+.++|+|||.|++..
T Consensus 125 ~~~fD~I~~~~~l~----h~~~~-----~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 125 PDSYDVIWIQWVIG----HLTDQ-----HLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp SSCEEEEEEESCGG----GSCHH-----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccc----cchhh-----hhhhHHHHHHHhcCCcceEEEEE
Confidence 27899999976421 22221 13467889999999999999854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.5e-09 Score=113.00 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=88.0
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------------------C
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------------------P 80 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------------------~ 80 (832)
|-.=+++-+..++ +.||.+|||+|||+|+++.+|+..++++++|+++|+++- . .
T Consensus 83 ypkD~~~Il~~l~-----i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~ 157 (324)
T d2b25a1 83 FPKDINMILSMMD-----INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE 157 (324)
T ss_dssp CHHHHHHHHHHHT-----CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred ccccHHHHHHHhC-----CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 5555666555543 689999999999999999999999988999999999851 0 1
Q ss_pred -CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 81 -IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 81 -i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..++.++++|+...... +. ...||.|+.|.+ + .|. +|..+.++|+|||.|++-+
T Consensus 158 ~~~nv~~~~~di~~~~~~------~~---~~~fD~V~LD~p-~---P~~------------~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 158 WPDNVDFIHKDISGATED------IK---SLTFDAVALDML-N---PHV------------TLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp CCCCEEEEESCTTCCC----------------EEEEEECSS-S---TTT------------THHHHGGGEEEEEEEEEEE
T ss_pred cccceeEEecchhhcccc------cC---CCCcceEeecCc-C---HHH------------HHHHHHHhccCCCEEEEEe
Confidence 24688999999864211 11 267899999863 1 231 3557889999999998733
Q ss_pred cCCCCHHHHHHHHHH---cccceEEe
Q 003302 160 FRSQDYSSVLYCLKQ---LFEKVEVD 182 (832)
Q Consensus 160 Frs~d~~~ll~~L~~---~F~~V~~~ 182 (832)
-.-.....++..|+. .|..+.++
T Consensus 213 P~i~Qv~~~~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 213 VNITQVIELLDGIRTCELALSCEKIS 238 (324)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEE
Confidence 221122334445542 27666654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.83 E-value=1.1e-09 Score=109.79 Aligned_cols=98 Identities=10% Similarity=0.136 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++.+|||||||+|.++..++.. +..|+|||+++ +. ...++.++++|+.+.. + .+.||+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~--------~----~~~fD~ 84 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--------L----PRRYDN 84 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--------C----SSCEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccccccccccccccccc--------c----cccccc
Confidence 4568999999999999988765 35799999997 21 1246889999887642 1 267999
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHH-hhcccCcEEEEEEcCCCCH
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLAT-QFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~-~~LkpGG~fV~KVFrs~d~ 165 (832)
|+|.... .|..+. ..+|..+. ++|+|||+|++.+.....+
T Consensus 85 I~~~~vl----eh~~d~-------~~~l~~i~~~~Lk~gG~l~i~~pn~~~~ 125 (225)
T d2p7ia1 85 IVLTHVL----EHIDDP-------VALLKRINDDWLAEGGRLFLVCPNANAV 125 (225)
T ss_dssp EEEESCG----GGCSSH-------HHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred cccccee----EecCCH-------HHHHHHHHHHhcCCCceEEEEeCCcccH
Confidence 9997532 222222 34556666 7899999999977655543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=5e-10 Score=110.28 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.++.+|||||||+|.++..++ .++|||+++ +. ...++.++++|+.+++. . .+.||+|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~--------~---~~~fD~I~ 96 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRGVFVLKGTAENLPL--------K---DESFDFAL 96 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHTTCEEEECBTTBCCS--------C---TTCEEEEE
T ss_pred CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccccccccccccccccc--------c---cccccccc
Confidence 356689999999999887663 468999997 22 23578999999987542 1 26789999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|.... .|..+ ...+|..+.++|+|||.|++.+.....
T Consensus 97 ~~~~l----~h~~d-------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 97 MVTTI----CFVDD-------PERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp EESCG----GGSSC-------HHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccccc----ccccc-------cccchhhhhhcCCCCceEEEEecCCcc
Confidence 97642 22222 235678899999999999997765544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6.2e-09 Score=104.68 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------------------------CCCCceEEEccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------------------------PIRGAVSLEQDI 91 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------------------------~i~~V~~i~gDI 91 (832)
+.++.+|||+|||+|..+..|+.. +..|+|||+|+.. .-.++.++++|+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 467889999999999999999986 5699999999621 013578899998
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..+.. ...+.||+|+..+....- ..+ .....+..+.++|+|||+|++..|.
T Consensus 120 ~~l~~----------~~~~~fd~i~~~~~l~~~---~~~------~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 120 FDLPR----------TNIGKFDMIWDRGALVAI---NPG------DRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGGG----------SCCCCEEEEEESSSTTTS---CGG------GHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hhccc----------cccCceeEEEEEEEEEec---cch------hhHHHHHHHHhhcCCcceEEEEEcc
Confidence 77431 123788999987653221 111 1235677889999999998876553
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.9e-09 Score=108.91 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+|.+|||+|||+|.++..++...+ ..|+|||+++- . ...++.++.+++... ......+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 120 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV---------APTLPDG 120 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH---------GGGSCTT
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhccccccccccccccc---------ccccccc
Confidence 5788999999999999999987643 58999999972 1 123456666664331 1112237
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+||+|+.|........+. ......+++.+.++|+|||.|++
T Consensus 121 ~fD~i~fD~~~~~~~~~~------~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 121 HFDGILYDTYPLSEETWH------THQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CEEEEEECCCCCBGGGTT------THHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccceeeccccccccccc------ccCHHHHHHHHHHHcCCCcEEEE
Confidence 899999997644322211 12234678889999999999986
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.75 E-value=8.6e-09 Score=109.06 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||||||+|+|+.+++.. ++.|++||+++-. .+ ..+.++++|+... +......
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~-----l~~~~~~- 201 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF-----IQREERR- 201 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH-----HHHHHHH-
T ss_pred cCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh-----HHHHhhc-
Confidence 46789999999999999998864 5689999999621 23 2588999998763 2222211
Q ss_pred cCCcccEEEeCCCCCCCC----CchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC--CHHHHHHHHHHcc
Q 003302 108 GVRAFDLVLHDGSPNVGG----AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ--DYSSVLYCLKQLF 176 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g----~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~--d~~~ll~~L~~~F 176 (832)
...||+|++|++....+ .|....+ ....+..|..+|.|||.|++....+. ....+..++.+.+
T Consensus 202 -~~~fD~IilDPP~f~~~~~~~~~~~~~~-----~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~ 270 (309)
T d2igta1 202 -GSTYDIILTDPPKFGRGTHGEVWQLFDH-----LPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETM 270 (309)
T ss_dssp -TCCBSEEEECCCSEEECTTCCEEEHHHH-----HHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHT
T ss_pred -CCCCCEEEECCCcccccccchhHHHHHH-----HHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 16789999998633211 2333222 22345678899999998776544433 3444555555544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.75 E-value=8e-09 Score=105.59 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=73.8
Q ss_pred hcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHHH
Q 003302 36 KFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 36 kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
.|. +....+|||||||+|.++..+++..| +..++++|+.++. . ..+|.++.+|+++..
T Consensus 75 ~~d-~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------- 143 (253)
T d1tw3a2 75 AYD-WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------- 143 (253)
T ss_dssp HSC-CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred hcC-CccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhc---------
Confidence 344 45668999999999999999999987 6799999986532 1 246899999987631
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|++..... +|..+ -+..+|+.+.++|+|||+|++.-+
T Consensus 144 ----~~~~D~v~~~~vlh---~~~d~------~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 144 ----PRKADAIILSFVLL---NWPDH------DAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp ----SSCEEEEEEESCGG---GSCHH------HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ----ccchhheeeccccc---cCCch------hhHHHHHHHHHhcCCCcEEEEEec
Confidence 15689999864321 12211 134678899999999999998543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.7e-08 Score=107.48 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------------CCCCceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------------PIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------------~i~~V~~i~gDIt~~~~~~~ 99 (832)
+.++.+|||||||+|.++..++...+ ...|+|||+++.. ...+|.++++|+.+.+..+.
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~ 227 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER 227 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence 57899999999999999999988876 4689999999721 23568999999998764332
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+ ..+|+|+++.. .+..+ +..+|..+.+.|+|||++|+
T Consensus 228 ~---------~~advi~~~~~-----~f~~~-------~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 228 I---------ANTSVIFVNNF-----AFGPE-------VDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp H---------HHCSEEEECCT-----TTCHH-------HHHHHHHHHTTCCTTCEEEE
T ss_pred c---------CcceEEEEcce-----ecchH-------HHHHHHHHHHhCCCCcEEEE
Confidence 2 12389998642 11121 24567888999999999997
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=6.2e-09 Score=107.31 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=72.4
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhC----C-CCCEEEEEeCCC-C--------CC---CCCceEEEccC
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRV----P-VGSLVLGLDLVP-I--------AP---IRGAVSLEQDI 91 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~----p-~~~~ViGVDLsp-~--------~~---i~~V~~i~gDI 91 (832)
+|.++..++...++..+|||+|||||.++..++..+ + ....++|||+++ | .. ++++.+.....
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 344444444444555689999999999987776542 2 234689999986 2 11 23333322222
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+-. ..............||+|+|..+. .|..+. ..+|+.+.++|+|||.|++.++....
T Consensus 107 ~~~---~~~~~~~~~~~~~~fD~I~~~~~l----~~~~d~-------~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 107 TSS---EYQSRMLEKKELQKWDFIHMIQML----YYVKDI-------PATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp CHH---HHHHHHTTSSSCCCEEEEEEESCG----GGCSCH-------HHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred hhh---hhcchhcccCCCCceeEEEEccce----ecCCCH-------HHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 211 111111112223789999997542 233332 35788899999999999997766554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=1.1e-08 Score=100.41 Aligned_cols=133 Identities=23% Similarity=0.313 Sum_probs=92.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+|..+||++||+||.+..++.. +++|+|+|..|.. ..+++.++++++.+.. ..+.......|
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~------~~l~~~~~~~v 86 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLK------RHLAALGVERV 86 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHH------HHHHHTTCSCE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHH------HHHHHcCCCcc
Confidence 478999999999999999999886 5799999999842 3468999999888743 22333233678
Q ss_pred cEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecC
Q 003302 113 DLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKP 184 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP 184 (832)
|.|+.|..+. . +..+ +...+..+...|..+..+|+|||.+++..|.+.....+...+...+.++..-||
T Consensus 87 dgIl~DLGvS--s-~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i~kK~ 156 (182)
T d1wg8a2 87 DGILADLGVS--S-FHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLTKKP 156 (182)
T ss_dssp EEEEEECSCC--H-HHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEESCSSC
T ss_pred CEEEEEccCC--H-HHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceeccCCC
Confidence 9999996422 1 1122 222234455688899999999999999888776544455566655444433344
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2.4e-09 Score=108.40 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=70.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------------CCCCceEEEccCCChhHHHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------------PIRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------------~i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
+++|.+|||+|||+|.++.++++.+++.+.|+|||+++ +. ...++.++++|+.....
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------- 146 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------- 146 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-------
Confidence 57999999999999999999999988888999999996 21 13568888999865321
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .++||+|++++++. +.++ ...+.|+|||.||+-+
T Consensus 147 -~---~~~fD~I~~~~~~~----~ip~-------------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 147 -E---EAPYDAIHVGAAAP----VVPQ-------------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp -G---GCCEEEEEECSBBS----SCCH-------------HHHHTEEEEEEEEEEE
T ss_pred -h---hhhhhhhhhhcchh----hcCH-------------HHHhhcCCCcEEEEEE
Confidence 1 16799999987532 1222 2457899999999844
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=3.9e-09 Score=109.94 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC----------C----CCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP----------I----RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~----------i----~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
++.+|||||||+|.++..|+.. +..|+|||+++ |.. . ....+..+++..... .+.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~- 125 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK------DVP- 125 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH------HSC-
T ss_pred CCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc------ccC-
Confidence 5679999999999999999886 46899999997 310 0 123344455443210 111
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
....||+|+|-+.. -.+..+......-...+|+.+.++|+|||+||+.++
T Consensus 126 -~~~~fd~v~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 126 -AGDGFDAVICLGNS---FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp -CTTCEEEEEECSSC---GGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CCCCceEEEEecCc---hhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 12678999986521 011111111112235688999999999999998653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.70 E-value=1.6e-08 Score=103.87 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C--------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I--------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~--------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||+|||+|.++..++... ...|+|||+++ + ...+.+.++++|+.+... ..+.
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~-----------~~~~ 158 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL-----------PPNT 158 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC-----------CSSC
T ss_pred CCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhccccccccceeEEcccccccc-----------CCCc
Confidence 356799999999999998776543 24899999997 2 134568899999876431 1278
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
||+|++.... .|..+. -+..+|+.+.++|+|||+|++..
T Consensus 159 fD~I~~~~vl----~hl~d~-----d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 159 YDLIVIQWTA----IYLTDA-----DFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEEEEEESCG----GGSCHH-----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEeeccc----cccchh-----hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9999997532 222221 13467889999999999999854
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.68 E-value=2.2e-08 Score=99.91 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
....|||+|||+|.++..+|...| +..++|||+++. ..++|+.++++|+..+. ..+.. .
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~------~~~~~---~ 100 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT------DYFED---G 100 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG------GTSCT---T
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh------hhccC---C
Confidence 456899999999999999999987 679999999962 15789999999998742 12332 6
Q ss_pred cccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+|.|++..+. .|... +....-+....|..+.++|+|||.|.+.+
T Consensus 101 ~~~~i~i~fPd----Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 101 EIDRLYLNFSD----PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSEEEEESCC----CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ceehhcccccc----cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 67988876431 23222 11111112456778899999999998743
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.67 E-value=1.1e-08 Score=105.92 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||||||+|+++..++.+. .+.|+|||++|.. .+.+ |+++++|+++.. ..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~---------~~- 172 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP---------GE- 172 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC---------CC-
T ss_pred cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc---------cC-
Confidence 5789999999999999999999872 4699999999731 3444 889999998742 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||.|+++.++.. . ..+..|+.+|++||++.+-.|
T Consensus 173 --~~~D~Ii~~~p~~~-----~----------~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 173 --NIADRILMGYVVRT-----H----------EFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp --SCEEEEEECCCSSG-----G----------GGHHHHHHHEEEEEEEEEEEE
T ss_pred --CCCCEEEECCCCch-----H----------HHHHHHHhhcCCCCEEEEEec
Confidence 66899999876432 1 123457889999999876433
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.6e-08 Score=97.96 Aligned_cols=151 Identities=9% Similarity=0.043 Sum_probs=95.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+..+|||||||+|+++..++..+| +..|+|+|+++-. .+.+ +.+++.+....- ...+.....
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~-----~~~~~~~~~ 134 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL-----MDALKEESE 134 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS-----TTTSTTCCS
T ss_pred ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh-----hhhhhhccc
Confidence 346899999999999999999887 6899999999621 2333 555655443311 011111122
Q ss_pred CcccEEEeCCCCCCCCCchh----------HHhH--------------HhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ----------EAMS--------------QNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~----------D~~~--------------q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
+.||+|+|||+......... .+.. -...+...+..+..+++..|+|.+.+.+....
T Consensus 135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l 214 (250)
T d2h00a1 135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSL 214 (250)
T ss_dssp CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSH
T ss_pred CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhH
Confidence 67999999986442211100 0000 01235667888999999999999888888888
Q ss_pred HHHHHHHHHc-ccceEEecCCCCCCCCcceeEEEeec
Q 003302 166 SSVLYCLKQL-FEKVEVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 166 ~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvVc~gf 201 (832)
..+...|..+ |..|.++...+++ .-..+||=.|
T Consensus 215 ~~i~~~L~~~g~~~i~~ie~~qG~---~~r~iiaWsf 248 (250)
T d2h00a1 215 APLKEELRIQGVPKVTYTEFCQGR---TMRWALAWSF 248 (250)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEEES
T ss_pred HHHHHHHHHcCCCeEEEEEecCCC---EeEEEEEEEe
Confidence 8888777655 6777777654432 2345665443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.4e-08 Score=102.52 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=29.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
..+|.+|||||||||.++..++... ...|+|+|+++
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~ 84 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTD 84 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCH
Confidence 3567899999999999987776542 34799999997
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=2.2e-08 Score=105.75 Aligned_cols=95 Identities=16% Similarity=0.273 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||||||+|.++..|++. + ..+|+|||++++. .+ .+|.++++|+.+... +.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~-----------~~ 98 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL-----------PV 98 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCC-----------SS
T ss_pred CCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHccc-----------cc
Confidence 36899999999999999988885 2 3589999999852 22 358899999988541 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..||+|++.....+ .+... .+..++..+.++|+|||.++
T Consensus 99 ~~~D~ivs~~~~~~--l~~e~------~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 99 EKVDIIISEWMGYC--LFYES------MLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp SCEEEEEECCCBBT--BTBTC------CHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEeeeeeeee--eccHH------HHHHHHHHHHhcCCCCeEEE
Confidence 67899999754221 11111 12345667789999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=5e-08 Score=103.45 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+|.+|||||||+|.++..|++.. ..+|+|+|.+++. . ...++++++|+.+.. +. ..
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--------~~---~~ 104 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH--------LP---FP 104 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--------CS---SS
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhcc--------Cc---cc
Confidence 68999999999999999888762 3599999999852 1 245889999998753 11 26
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.||+|++.....+... . .....++....++|+|||.++
T Consensus 105 ~~D~i~se~~~~~~~~-e-------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 105 KVDIIISEWMGYFLLY-E-------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CEEEEEECCCBTTBST-T-------CCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEEecceeecc-c-------hhHHHHHHHHHhccCCCeEEE
Confidence 7899999864322111 0 011234555678999999986
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.52 E-value=1.7e-08 Score=102.19 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+++|.+|||+|||+|.++.+|+... +.|++||+++- ....++.++++|+.... . ..+
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~---------~--~~~ 133 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY---------E--EEK 133 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC---------G--GGC
T ss_pred hcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhcc---------h--hhh
Confidence 6899999999999999999999874 58999999862 23578999999986521 1 126
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+||+|++.+++. +.++ .....|+|||.+|+-+
T Consensus 134 pfD~Iiv~~a~~----~ip~-------------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 134 PYDRVVVWATAP----TLLC-------------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CEEEEEESSBBS----SCCH-------------HHHHTEEEEEEEEEEE
T ss_pred hHHHHHhhcchh----hhhH-------------HHHHhcCCCCEEEEEE
Confidence 799999987532 2222 1346899999999833
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=1.5e-07 Score=102.84 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------------CCCCce-EEEccCCChhHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------------PIRGAV-SLEQDITKPECRA 98 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------------~i~~V~-~i~gDIt~~~~~~ 98 (832)
+++|++|||||||+|..+..+|...+ .+.|+|||+++.. ....+. .+.++........
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d 292 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 292 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence 58999999999999999999988876 4589999999721 011122 2455555433221
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+ ..+|+|+++.. .+..+ +..+|..+++.|+|||.||+
T Consensus 293 ---~~~-----~~adVV~inn~-----~f~~~-------l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 293 ---ELI-----PQCDVILVNNF-----LFDED-------LNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp ---HHG-----GGCSEEEECCT-----TCCHH-------HHHHHHHHHTTCCTTCEEEE
T ss_pred ---ccc-----ccceEEEEecc-----cCchH-------HHHHHHHHHHhcCCCcEEEE
Confidence 112 34599998642 11121 24677889999999999987
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.6e-08 Score=101.56 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..+++.. ...|+|+|+++.. ...++.++++|+.+... ..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~-----------~~ 100 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL-----------PV 100 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC-----------SC
T ss_pred CCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC-----------cc
Confidence 368899999999999999888863 3589999999842 13468899999987531 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..||+|++....... +.. ......+....++|+|||.++
T Consensus 101 ~~~D~Ivse~~~~~~--~~e------~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 101 EKVDVIISEWMGYFL--LFE------SMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp SCEEEEEECCCBTTB--TTT------CHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEEEeeeeeec--ccc------cccHHHHHHHHhcCCCCcEEe
Confidence 678999998643211 111 112234445678999999997
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.49 E-value=1.5e-07 Score=92.66 Aligned_cols=109 Identities=21% Similarity=0.207 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C-CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
..++.+|||.|||+|+|+..+...++....|+|+|+.+.. . ......+++|..... ....||+|++
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~------------~~~~fd~ii~ 84 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE------------PGEAFDLILG 84 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC------------CSSCEEEEEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc------------cccccceecc
Confidence 4578899999999999999888887777899999999853 2 234566777765421 2367899999
Q ss_pred CCCCCCCCCchh----------HHhH--------HhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 118 DGSPNVGGAWAQ----------EAMS--------QNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 118 Dgapnv~g~w~~----------D~~~--------q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|++.+....... +.+. ...+....+..+.++|+|||.+++-+.
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 986543211110 1110 011234556788999999999988553
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.46 E-value=1.2e-07 Score=97.09 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=73.2
Q ss_pred hhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHH
Q 003302 35 SKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 35 ~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
..|. |....+|||||||+|.++..+++..| +..++++|+..+. . ..++.+..+|+.++.
T Consensus 75 ~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-------- 144 (256)
T d1qzza2 75 DAYD-WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL-------- 144 (256)
T ss_dssp HTSC-CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------
T ss_pred hcCC-CccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccc--------
Confidence 3444 45668999999999999999999987 6799999985421 1 245888888887631
Q ss_pred HhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 104 MEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+ ..||+|++.... -.|..+ -+..+|+.+.++|+|||+|++.-+
T Consensus 145 ----p-~~~D~v~~~~vL---h~~~d~------~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 ----P-VTADVVLLSFVL---LNWSDE------DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ----S-CCEEEEEEESCG---GGSCHH------HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----c-ccchhhhccccc---cccCcH------HHHHHHHHHHhhcCCcceeEEEEe
Confidence 1 457999986321 123222 235678899999999999998543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.42 E-value=1.9e-07 Score=88.37 Aligned_cols=96 Identities=25% Similarity=0.263 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+|||||||+|+++..++.+. ...|++||+++.. .+ .++.++++|++.. +.. ..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~---------l~~-~~ 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA---------IDC-LT 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---------HHH-BC
T ss_pred CCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc---------ccc-cc
Confidence 58899999999999998777662 3599999999621 22 3488899987642 111 22
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++||+. ....+. -.+..+. ...+|+|||.+++..
T Consensus 82 ~~fDiIf~DPPy------~~~~~~---~~l~~i~-~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 82 GRFDLVFLDPPY------AKETIV---ATIEALA-AKNLLSEQVMVVCET 121 (152)
T ss_dssp SCEEEEEECCSS------HHHHHH---HHHHHHH-HTTCEEEEEEEEEEE
T ss_pred cccceeEechhh------ccchHH---HHHHHHH-HCCCcCCCeEEEEEe
Confidence 678999999752 111111 1122332 346899999999853
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.40 E-value=8.1e-08 Score=95.34 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.|.+|||||||+|.++..++.+ + ...|+|||+++.. ..+++.++++|+.... +.||+|
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~--------------~~fD~V 111 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS--------------GKYDTW 111 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC--------------CCEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHccccccEEEEehhhcC--------------CcceEE
Confidence 4789999999999998777765 2 3589999999732 3578999999997632 778999
Q ss_pred EeCCCC
Q 003302 116 LHDGSP 121 (832)
Q Consensus 116 lsDgap 121 (832)
++|+++
T Consensus 112 i~NPPf 117 (197)
T d1ne2a_ 112 IMNPPF 117 (197)
T ss_dssp EECCCC
T ss_pred EeCccc
Confidence 999864
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=4.5e-07 Score=94.04 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..+|||+|||+|..+..++.. | ++.|+|+|+++-+ .+.+ +.++.+|+..+. . ...+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~---------~-~~~~ 178 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---------K-EKFA 178 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---------G-GGTT
T ss_pred ccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc---------c-cccC
Confidence 468999999999999988865 4 7899999999731 2333 556678877632 1 1226
Q ss_pred cccEEEeCCCCCCCCCc-----hhHHhH-------HhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccc
Q 003302 111 AFDLVLHDGSPNVGGAW-----AQEAMS-------QNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w-----~~D~~~-------q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~ 178 (832)
.||+|+|||+.-....+ ..++.. ...... +.+.++|+|||+|++.+-..+ . ..+.++|..
T Consensus 179 ~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r---~i~~~~L~~~G~l~~Eig~~Q-~----~~v~~l~~~ 250 (271)
T d1nv8a_ 179 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYR---EFFGRYDTSGKIVLMEIGEDQ-V----EELKKIVSD 250 (271)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHH---HHHHHCCCTTCEEEEECCTTC-H----HHHTTTSTT
T ss_pred cccEEEEcccccCcccccceeeeeccccccccccchHHHHH---HHHHHhcCCCCEEEEEECHHH-H----HHHHHHHHh
Confidence 78999999852211101 011110 012222 235689999999999664333 2 235677888
Q ss_pred eEEecCCCCCCCCcceeEEEe
Q 003302 179 VEVDKPAASRSASAEIYLLGI 199 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~ 199 (832)
+..++..+.+. ++++++
T Consensus 251 ~g~~kDl~g~~----R~~~~~ 267 (271)
T d1nv8a_ 251 TVFLKDSAGKY----RFLLLN 267 (271)
T ss_dssp CEEEECTTSSE----EEEEEE
T ss_pred CCEEeccCCCc----EEEEEE
Confidence 88888777663 666654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=8.4e-07 Score=87.79 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C--CCCceEEEccCCChh
Q 003302 26 ASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P--IRGAVSLEQDITKPE 95 (832)
Q Consensus 26 aafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~--i~~V~~i~gDIt~~~ 95 (832)
.|-.++.+...+.-+ .|.+|||||||+|+++..++.+ + ...|+|||+++.. . -..+.++++|+..+.
T Consensus 31 ~a~~~~~~~~~~~dl-~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~ 107 (201)
T d1wy7a1 31 AASELLWLAYSLGDI-EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN 107 (201)
T ss_dssp HHHHHHHHHHHTTSS-TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC
T ss_pred HHHHHHHHHHhcCCC-CCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC
Confidence 344555544444433 4789999999999999887765 3 3599999999721 1 124677888876531
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
..||+|++|++..
T Consensus 108 --------------~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 108 --------------SRVDIVIMNPPFG 120 (201)
T ss_dssp --------------CCCSEEEECCCCS
T ss_pred --------------CcCcEEEEcCccc
Confidence 6789999998653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.30 E-value=1.5e-07 Score=95.05 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCC-----CCEEEEEeCCCC-C---------------CCCCceEEEccCCChhHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPV-----GSLVLGLDLVPI-A---------------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~-----~~~ViGVDLsp~-~---------------~i~~V~~i~gDIt~~~~~~ 98 (832)
++++.+|||+|||+|.++.+++..++. ..+|++||+.+- . .+.+|.++++|.....
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~--- 154 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY--- 154 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC---
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc---
Confidence 578999999999999999999988643 348999999862 1 2357899999987532
Q ss_pred HHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.. .++||+|++.+++.. .++ .....|+|||++|+-+.
T Consensus 155 -----~~---~~~fD~Iiv~~a~~~----~p~-------------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 155 -----PP---NAPYNAIHVGAAAPD----TPT-------------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp -----GG---GCSEEEEEECSCBSS----CCH-------------HHHHTEEEEEEEEEEES
T ss_pred -----cc---ccceeeEEEEeechh----chH-------------HHHHhcCCCcEEEEEEe
Confidence 11 268999999886421 111 13579999999998554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.30 E-value=1.9e-07 Score=93.84 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||+|..+.+++..++ +.|++||..+- ..+.|+.++++|++.... .
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----------~ 142 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----------P 142 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----------G
T ss_pred cCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----------c
Confidence 57899999999999999999998864 57999999962 146889999999876321 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.++||+|++.++... .++ .....|+|||++|+-
T Consensus 143 ~~pfD~Iiv~~a~~~----ip~-------------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPK----IPE-------------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSS----CCH-------------HHHHTEEEEEEEEEE
T ss_pred cCcceeEEeeccccc----CCH-------------HHHHhcCCCCEEEEE
Confidence 278999999876321 122 134679999999983
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.28 E-value=5.6e-07 Score=94.85 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=82.2
Q ss_pred HhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCC----CCCEEEEEeCCCCC----------CCCCceEEEccCCChhH
Q 003302 31 VQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP----VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 31 iqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p----~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~ 96 (832)
+.+...+.-..++.+|||.|||+|+++..+..++. ....++|+|+++.. ...++.++++|.....
T Consensus 106 ~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 184 (328)
T d2f8la1 106 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL- 184 (328)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-
Confidence 33333333345677899999999999988876542 24479999999731 1234566777765421
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhH---------HhHHHHHHHHHHHhhcccCcEEEEEE----cCCC
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMS---------QNALVIDSVKLATQFLAPKGTFVTKV----FRSQ 163 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~---------q~~L~~~aLk~A~~~LkpGG~fV~KV----Frs~ 163 (832)
....||+|++||+... .+..+... ...+....+..++.+|+|||++++-+ |.+.
T Consensus 185 -----------~~~~fD~vi~NPPy~~--~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~ 251 (328)
T d2f8la1 185 -----------LVDPVDVVISDLPVGY--YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTS 251 (328)
T ss_dssp -----------CCCCEEEEEEECCCSE--ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGST
T ss_pred -----------ccccccccccCCCCCC--CccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCc
Confidence 1267899999987432 22221110 00122345678899999999988744 3455
Q ss_pred CHHHHHHHHHHcccc
Q 003302 164 DYSSVLYCLKQLFEK 178 (832)
Q Consensus 164 d~~~ll~~L~~~F~~ 178 (832)
.+..+...|...|.-
T Consensus 252 ~~~~lR~~L~~~~~i 266 (328)
T d2f8la1 252 DFAKVDKFIKKNGHI 266 (328)
T ss_dssp THHHHHHHHHHHEEE
T ss_pred hhHHHHHHHHhCCcE
Confidence 566666555544433
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=4.7e-07 Score=87.35 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+..|.+|||||||+|+++..++.+ ++.|++||+++.. .+. ..+...+... .+. ... ..
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~-----~~~-~~~-~~ 107 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEV-----FLP-EAK-AQ 107 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHH-----HHH-HHH-HT
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhc-----ccc-ccc-cc
Confidence 357889999999999999887776 4589999999732 121 1222222211 011 111 12
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..+||+|++||+...+ . . .++..++ ...+|+|||.+|+..
T Consensus 108 ~~~fD~If~DPPY~~~-~---~-----~~l~~l~--~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 108 GERFTVAFMAPPYAMD-L---A-----ALFGELL--ASGLVEAGGLYVLQH 147 (171)
T ss_dssp TCCEEEEEECCCTTSC-T---T-----HHHHHHH--HHTCEEEEEEEEEEE
T ss_pred CCccceeEEccccccC-H---H-----HHHHHHH--HcCCcCCCeEEEEEe
Confidence 2678999999864321 1 0 1122222 346899999998743
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=1.6e-06 Score=88.26 Aligned_cols=109 Identities=14% Similarity=0.268 Sum_probs=79.8
Q ss_pred HHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHH
Q 003302 27 SWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 27 afKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
......+...|..+....+|||+|||+|.++..+++..| +.+++.+|+... ....+|.++.+|+.++.
T Consensus 66 ~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~------- 137 (244)
T d1fp1d2 66 ATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFASV------- 137 (244)
T ss_dssp HHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTCC-------
T ss_pred HHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecchhhhhccCCCCCeEEecCCccccc-------
Confidence 333445556677567778999999999999999999987 679999998652 23467999999987631
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...|+|++.- +--.|.. +-+..+|+.+.+.|+|||.+++.-
T Consensus 138 -------p~~D~~~l~~---vLh~~~d------e~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 138 -------PQGDAMILKA---VCHNWSD------EKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp -------CCEEEEEEES---SGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------ccceEEEEeh---hhhhCCH------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2339888752 2112332 225678899999999999998853
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.20 E-value=5.9e-06 Score=83.74 Aligned_cols=104 Identities=14% Similarity=0.239 Sum_probs=75.3
Q ss_pred HhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 31 VQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 31 iqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..+...|.++....+|||||||+|.++..+++..| +.+++++|+.+.. ..+++.++.+|+.++. +
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~---------P- 138 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSI---------P- 138 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTTTTTCCCCTTEEEEECCTTTCC---------C-
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHhhhhcccCCceEEecccccccC---------C-
Confidence 34445566666678999999999999999999997 6799999997643 2467999999997642 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..|+++.- ++-..|..+ .+..+|+.+.+.|+|||++++.
T Consensus 139 ----~ad~~~l~---~vlh~~~d~------~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 139 ----KADAVFMK---WICHDWSDE------HCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp ----CCSCEECS---SSSTTSCHH------HHHHHHHHHHHHCCSSSCEEEE
T ss_pred ----CcceEEEE---EEeecCCHH------HHHHHHHHHHHhcCCCceEEEE
Confidence 12555542 122234433 2456889999999999998874
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.14 E-value=1.1e-06 Score=85.67 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+|||||||+|+++..++.+. ...|++||.++.. .. .++.++++|+... +...... .
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~-----l~~~~~~--~ 111 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA-----LEQFYEE--K 111 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-----HHHHHHT--T
T ss_pred CCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh-----hhhhccc--C
Confidence 57899999999999999887763 3489999999621 12 3578889988652 2221111 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..||+|++||+.. ...+. .+ +..+ ....+|+|||.+|+...
T Consensus 112 ~~fDlIflDPPY~------~~~~~--~~-l~~i-~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 112 LQFDLVLLDPPYA------KQEIV--SQ-LEKM-LERQLLTNEAVIVCETD 152 (182)
T ss_dssp CCEEEEEECCCGG------GCCHH--HH-HHHH-HHTTCEEEEEEEEEEEE
T ss_pred CCcceEEechhhh------hhHHH--HH-HHHH-HHCCCCCCCEEEEEEcC
Confidence 5789999998521 11111 11 1111 12368999999988543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.14 E-value=8.3e-07 Score=88.77 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+..+||++|||+|..+.+++..++.+++|++||+++-. .+ .+|+++.||..+. +.........
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~-----l~~l~~~~~~ 130 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL-----IPQLKKKYDV 130 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-----GGGHHHHSCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc-----ccchhhcccc
Confidence 35799999999999999999998888999999999721 22 3488999987652 1111112223
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..||+|+.|+.. +.+. ....+..+.++|+|||.+|+
T Consensus 131 ~~~D~ifiD~~~--------~~~~----~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 131 DTLDMVFLDHWK--------DRYL----PDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp CCEEEEEECSCG--------GGHH----HHHHHHHHTTCEEEEEEEEE
T ss_pred cccceeeecccc--------cccc----cHHHHHHHhCccCCCcEEEE
Confidence 678999999641 1111 11234467789999999887
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1.3e-06 Score=85.10 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|||||||+|+++..++.+. ...|++||+++-. ...++.++++|+... +.. ...
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~---------l~~-~~~ 110 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---------LAQ-KGT 110 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---------HSS-CCC
T ss_pred chhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc---------ccc-ccc
Confidence 46799999999999998777763 3589999999621 345678888876531 221 226
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|++||+... + .... +...|. ...+|+++|.+++..
T Consensus 111 ~fDlIf~DPPY~~-~-~~~~-------~l~~l~-~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 111 PHNIVFVDPPFRR-G-LLEE-------TINLLE-DNGWLADEALIYVES 149 (183)
T ss_dssp CEEEEEECCSSST-T-THHH-------HHHHHH-HTTCEEEEEEEEEEE
T ss_pred ccCEEEEcCcccc-c-hHHH-------HHHHHH-HCCCCCCCeEEEEEe
Confidence 7899999976321 1 1111 112221 246899999999854
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.2e-06 Score=89.67 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.|.+|||||||||.++...+... ...|+|+|+++
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~ 87 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLE 87 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCH
T ss_pred CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCH
Confidence 57899999999998876544332 34899999997
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.3e-06 Score=84.69 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
...+||+||||+|..+.+++..++.+++|++||+++.. .+ ..+.++.+|+.+. +...+.....
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~-----l~~~~~~~~~ 133 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET-----LDELLAAGEA 133 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH-----HHHHHHTTCT
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc-----chhhhhhccc
Confidence 56899999999999999999999989999999999731 22 3488888987652 2222322223
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
++||+|+.|+... .+ ...+..+.++|+|||.+|+-
T Consensus 134 ~~fD~ifiD~dk~--------~y------~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 134 GTFDVAVVDADKE--------NC------SAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp TCEEEEEECSCST--------TH------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCccEEEEeCCHH--------HH------HHHHHHHHHHhcCCcEEEEe
Confidence 6899999997421 11 12344677899999999983
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.93 E-value=1.1e-05 Score=84.83 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
....+||.||+|.|+.+..++++.+ ...|++||+++.. .-+++.++.+|.... +
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~---------l 145 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---------L 145 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---------H
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH---------h
Confidence 4457899999999999988877644 5699999999731 135788888887652 2
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc----CCCCH-HHHHHHHHHcccce
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF----RSQDY-SSVLYCLKQLFEKV 179 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF----rs~d~-~~ll~~L~~~F~~V 179 (832)
... ...||+|++|.....+.......+. ....++.+.+.|+|||.||+-+- ..... ..+...|+..|..|
T Consensus 146 ~~~-~~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V 220 (312)
T d1uira_ 146 ERT-EERYDVVIIDLTDPVGEDNPARLLY----TVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYV 220 (312)
T ss_dssp HHC-CCCEEEEEEECCCCBSTTCGGGGGS----SHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEE
T ss_pred hhc-CCcccEEEEeCCCcccccchhhhhh----hHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceE
Confidence 221 2679999999743222110010010 13456788999999999998432 22233 33446688889988
Q ss_pred EEecC-CCCCCCCcceeEEEeec
Q 003302 180 EVDKP-AASRSASAEIYLLGIKY 201 (832)
Q Consensus 180 ~~~KP-~sSR~~SaEiyvVc~gf 201 (832)
..+.. +-|- .+.-.|++|-.-
T Consensus 221 ~~y~~~vPs~-~~~w~f~~aS~~ 242 (312)
T d1uira_ 221 RSYKNHIPGF-FLNFGFLLASDA 242 (312)
T ss_dssp EEEEEEEGGG-TEEEEEEEEESS
T ss_pred EEEEeeeCCc-CCCCEeEEEeCC
Confidence 87532 1122 223457776643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.88 E-value=1.7e-05 Score=79.91 Aligned_cols=98 Identities=9% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc-c
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH-G 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~-~ 108 (832)
...+||++|++.|.-+.+++..+|.+++|+.+|+++.. .+ ..|.++.++..+. +...+... .
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~-----L~~l~~~~~~ 133 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-----LDEMIKDEKN 133 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-----HHHHHHCGGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH-----HHHHHhcccc
Confidence 46899999999999999999999989999999999831 22 3478888887542 22222211 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+.||+|+.|+... .+ ...+..+..+|+|||.+|+-
T Consensus 134 ~~~fD~iFiDa~k~--------~y------~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 134 HGSYDFIFVDADKD--------NY------LNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp TTCBSEEEECSCST--------TH------HHHHHHHHHHBCTTCCEEEE
T ss_pred CCceeEEEeccchh--------hh------HHHHHHHHhhcCCCcEEEEc
Confidence 26799999997421 11 23345677899999999983
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.80 E-value=2.5e-05 Score=78.84 Aligned_cols=124 Identities=18% Similarity=0.255 Sum_probs=78.4
Q ss_pred CchHHHHHHhcCch--hHHHH-------------HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHH---hCCCCCEEE
Q 003302 10 LDKYYRLAKEHGYR--SRASW-------------KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQ---RVPVGSLVL 71 (832)
Q Consensus 10 ~D~yy~~Ake~gyr--sRaaf-------------KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~---~~p~~~~Vi 71 (832)
+|+|...+.+-||. ++-.+ .+.+|...+ + ..+||++|++.|+-+..++. .++..++|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~w~G~p~~k~p~d~~~~~eli~~~---K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~ 112 (232)
T d2bm8a1 37 LDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWEL---R-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVI 112 (232)
T ss_dssp GGGGGGSCCSCSSCCSSCCEETTEECCSCHHHHHHHHHHHHHH---C-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhhhhhcCcccCcCccccceecccCHHHHHHHHHHHHHh---C-CCEEEEECCCCchHHHHHHHHHHhcCCCceEE
Confidence 67777777777776 32221 111222222 3 46899999999986655543 345678999
Q ss_pred EEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHH
Q 003302 72 GLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLA 145 (832)
Q Consensus 72 GVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A 145 (832)
|||+.+-. ..+++.++++|.++..... .+.. ..||+|+.|+. +..++. ..-+. .
T Consensus 113 giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~----~l~~---~~~dlIfID~~------H~~~~v------~~~~~-~ 172 (232)
T d2bm8a1 113 GIDRDLSRCQIPASDMENITLHQGDCSDLTTFE----HLRE---MAHPLIFIDNA------HANTFN------IMKWA-V 172 (232)
T ss_dssp EEESCCTTCCCCGGGCTTEEEEECCSSCSGGGG----GGSS---SCSSEEEEESS------CSSHHH------HHHHH-H
T ss_pred ecCcChhhhhhhhccccceeeeecccccHHHHH----HHHh---cCCCEEEEcCC------cchHHH------HHHHH-H
Confidence 99998622 3468999999999876432 2222 45699999974 122221 11122 3
Q ss_pred HhhcccCcEEEE
Q 003302 146 TQFLAPKGTFVT 157 (832)
Q Consensus 146 ~~~LkpGG~fV~ 157 (832)
..+|++||++|+
T Consensus 173 ~~lLk~GG~iIv 184 (232)
T d2bm8a1 173 DHLLEEGDYFII 184 (232)
T ss_dssp HHTCCTTCEEEE
T ss_pred hcccCcCCEEEE
Confidence 479999999997
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.72 E-value=4.9e-05 Score=78.44 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------------CCCCceEEEccCCChhHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------------PIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------------~i~~V~~i~gDIt~~~~~~~ 99 (832)
....+||-||+|.|+.+..+..+ + ...|++||++|.. ..|++.++.+|....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~----- 143 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF----- 143 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-----
T ss_pred CCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-----
Confidence 45679999999999999887764 4 3589999999621 135688888887532
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHc
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQL 175 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~ 175 (832)
+ .. ...||+|++|.....+.. ..+. ....++.+.+.|+|||.||+-...+. ....++..|+..
T Consensus 144 l----~~--~~~yDvIi~D~~~~~~~~---~~L~----t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~ 210 (276)
T d1mjfa_ 144 I----KN--NRGFDVIIADSTDPVGPA---KVLF----SEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV 210 (276)
T ss_dssp H----HH--CCCEEEEEEECCCCC--------TT----SHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred H----hc--cCCCCEEEEeCCCCCCCc---cccc----CHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh
Confidence 2 22 167999999974322111 0110 13456788999999999998553322 233445667778
Q ss_pred ccceEEec-CCCCCCCCcceeEEEe
Q 003302 176 FEKVEVDK-PAASRSASAEIYLLGI 199 (832)
Q Consensus 176 F~~V~~~K-P~sSR~~SaEiyvVc~ 199 (832)
|..|..+. |.-+-. +...|++|-
T Consensus 211 F~~v~~y~~~vP~y~-~~w~f~~as 234 (276)
T d1mjfa_ 211 FDRVYYYSFPVIGYA-SPWAFLVGV 234 (276)
T ss_dssp CSEEEEEEECCTTSS-SSEEEEEEE
T ss_pred CCeeEEEEecCcCCC-CceEEEEEe
Confidence 99888753 333443 345777775
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=0.0001 Score=76.06 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||-||.|.|+.+..+.++.+ ...|+.|||+|.. .-|++.++.+|.... +.
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~---------l~ 143 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---------IA 143 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---------HH
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH---------Hh
Confidence 4557999999999999998887654 4699999999721 236788899987642 22
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~~ 181 (832)
.. ...||+|++|.....+..+.. + ....+..+.+.|+|||.||+-.-.+. .+..++..|...|..|..
T Consensus 144 ~~-~~~yDvIi~D~~~p~~~~~~L--~-----t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~ 215 (274)
T d1iy9a_ 144 KS-ENQYDVIMVDSTEPVGPAVNL--F-----TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKL 215 (274)
T ss_dssp TC-CSCEEEEEESCSSCCSCCCCC--S-----TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred hc-CCCCCEEEEcCCCCCCcchhh--c-----cHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEE
Confidence 22 267999999974322222211 1 12445678899999999998543222 134566677788988876
Q ss_pred ec-CCCCCCCCcceeEEEee
Q 003302 182 DK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~K-P~sSR~~SaEiyvVc~g 200 (832)
+. .+.+.++..-.|++|-.
T Consensus 216 y~~~vPsy~~g~w~f~~aS~ 235 (274)
T d1iy9a_ 216 YTANIPTYPSGLWTFTIGSK 235 (274)
T ss_dssp EEECCTTSGGGCEEEEEEES
T ss_pred EEEEeeecCCCceEEEEEcC
Confidence 53 23344444456777654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.61 E-value=7.7e-05 Score=75.52 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
....+|||+|||+|.++..+++..| +.+++.+|+... ....+|+++.+|+.++. ..+|+++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~--------------p~aD~~~ 143 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI--------------PNADAVL 143 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC--------------CCCSEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecCHHHHHhCcccCceEEEecCcccCC--------------CCCcEEE
Confidence 4457899999999999999999998 579999998652 22467999999997642 3359998
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC---cEEEEE
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK---GTFVTK 158 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG---G~fV~K 158 (832)
..-. --.|..+ -+..+|+.+...|+|| |.+++.
T Consensus 144 l~~v---LHdw~d~------~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 144 LKYI---LHNWTDK------DCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp EESC---GGGSCHH------HHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred EEee---cccCChH------HHHHHHHHHHHHcCcccCCcEEEEE
Confidence 7532 1123332 2567888999999999 666653
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00036 Score=77.87 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCC-----------------CEEEEEeCCCCC-----------CC-----CCceEE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVG-----------------SLVLGLDLVPIA-----------PI-----RGAVSL 87 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~-----------------~~ViGVDLsp~~-----------~i-----~~V~~i 87 (832)
.++.+|+|-|||+|+|+..+..++... ..++|+|+++.. .. .+-.+.
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 467899999999999998777664321 258999998621 11 112334
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHh-----HHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM-----SQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~-----~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++...... .....||+|++||+++. .|..+.. .....-...+..++.+|+|||++++-+
T Consensus 243 ~~~~l~~d~----------~~~~kfD~Ii~NPPfg~--~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 243 LGNTLGSDG----------ENLPKAHIVATNPPFGS--AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp ESCTTSHHH----------HTSCCEEEEEECCCCTT--CSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhhcc----------cccccceeEEecCCccc--cccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 455444221 11257899999987542 2211100 000011235667889999999988744
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.59 E-value=6.8e-05 Score=81.59 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCC------------CEEEEEeCCCCC-------------CCCCceEEEccCCChh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVG------------SLVLGLDLVPIA-------------PIRGAVSLEQDITKPE 95 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~------------~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~ 95 (832)
.++.+|+|-|||+|+|+..+.+++... ..++|+|+++.. ......+..+|....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~- 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK- 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh-
Confidence 457899999999999998887766421 248999999621 122344566766542
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCc----hhHHh--HHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAW----AQEAM--SQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w----~~D~~--~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.....||+|++||+.+..... ....+ .........+..+..+|++||.+++-+
T Consensus 240 -----------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 240 -----------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp -----------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 123678999999976432110 00000 000111235667889999999988744
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.58 E-value=3.1e-05 Score=75.01 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC--CceEEEccCCChhHHHHHHHHHh-hc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR--GAVSLEQDITKPECRARVKKVME-EH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~--~V~~i~gDIt~~~~~~~l~~~L~-~~ 107 (832)
.+.+|||||||+|+++..++.+- ...|+.||.++-. .+. .+.++..|+.+ .+. ..
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~---------~l~~~~ 111 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD---------FLKQPQ 111 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH---------HTTSCC
T ss_pred ccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccccccc---------cccccc
Confidence 46799999999999999988773 4599999999621 122 23444454322 111 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
....||+|++||+.... .+ ..++..+. -..+|+++|.+|+..
T Consensus 112 ~~~~fDlIFlDPPY~~~------~~---~~~l~~l~-~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 112 NQPHFDVVFLDPPFHFN------LA---EQAISLLC-ENNWLKPNALIYVET 153 (183)
T ss_dssp SSCCEEEEEECCCSSSC------HH---HHHHHHHH-HTTCEEEEEEEEEEE
T ss_pred cCCcccEEEechhHhhh------hH---HHHHHHHH-HhCCcCCCcEEEEEe
Confidence 12569999999864321 11 11122222 246899999999854
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=9.1e-05 Score=76.81 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||-||.|.|+.+..+.++.+ ...|++|||.|.. .-|++.++.+|.... +.
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~---------l~ 146 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---------MK 146 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---------HH
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH---------Hh
Confidence 4457899999999999998887654 4699999999621 136788899886542 22
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~~ 181 (832)
.. ...||+|++|.....+..+ . -.....+..+.+.|+|||.||+-..... . +..+...|+..|..|..
T Consensus 147 ~~-~~~yDvIi~D~~~p~~~~~---~----L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~ 218 (285)
T d2o07a1 147 QN-QDAFDVIITDSSDPMGPAE---S----LFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY 218 (285)
T ss_dssp TC-SSCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred cC-CCCCCEEEEcCCCCCCccc---c----cccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeE
Confidence 22 2679999999742221111 1 1123556788999999999998654332 2 23455667788998876
Q ss_pred ec-CCCCCCCCcceeEEEee
Q 003302 182 DK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~K-P~sSR~~SaEiyvVc~g 200 (832)
+. +..+.++..-.|++|..
T Consensus 219 y~~~vP~~~~g~w~f~~aSk 238 (285)
T d2o07a1 219 AYCTIPTYPSGQIGFMLCSK 238 (285)
T ss_dssp EEEECTTSGGGEEEEEEEES
T ss_pred EeeeeeecCCCCeEEEEEEC
Confidence 54 23444444446788764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00012 Score=76.30 Aligned_cols=142 Identities=12% Similarity=0.132 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||-||.|.|+.+..++++.+ ...|++|||+|.. .-|++.++.+|... .+.
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~---------~l~ 157 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE---------YVR 157 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH---------HGG
T ss_pred CCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH---------HHh
Confidence 3457999999999999988887654 5689999999731 13678888888754 233
Q ss_pred hccCCcccEEEeCCCCCC-CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceE
Q 003302 106 EHGVRAFDLVLHDGSPNV-GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVE 180 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv-~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~ 180 (832)
.. ...||+|++|..-.. +.... + .....+..+.+.|+|||.||+-...+. + +..+...|+..|..|.
T Consensus 158 ~~-~~~yDvIi~D~~dp~~~~~~~---L----~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~ 229 (295)
T d1inla_ 158 KF-KNEFDVIIIDSTDPTAGQGGH---L----FTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR 229 (295)
T ss_dssp GC-SSCEEEEEEEC-------------C----CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred cC-CCCCCEEEEcCCCCCcCchhh---h----ccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeE
Confidence 22 267999999974211 11000 0 023556788999999999998654332 2 3445566788898887
Q ss_pred EecC-CCCCCCCcceeEEEee
Q 003302 181 VDKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~KP-~sSR~~SaEiyvVc~g 200 (832)
.+.. ..+-++..-.|++|..
T Consensus 230 ~y~~~vPtyp~G~w~f~~aSk 250 (295)
T d1inla_ 230 VYLGFMTTYPSGMWSYTFASK 250 (295)
T ss_dssp EEEEECTTSTTSEEEEEEEES
T ss_pred EEEeeeceecCcccEEEEEeC
Confidence 6542 2333333446777754
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.47 E-value=0.00019 Score=75.18 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||-||.|.|+.+..+.++.+ ...|+.|||.+.. + -|++.++.+|.... + .
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~-----l----~ 174 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-----L----K 174 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-----H----H
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH-----H----H
Confidence 4457899999999999998887654 4589999999621 1 26788888886532 2 2
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~~ 181 (832)
. ....||+|++|.....+.. . .-.....+..+.+.|+|||.||+-.-... .+..++..++..|..|..
T Consensus 175 ~-~~~~yDvII~D~~dp~~~~---~----~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~ 246 (312)
T d2b2ca1 175 N-HKNEFDVIITDSSDPVGPA---E----SLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTY 246 (312)
T ss_dssp H-CTTCEEEEEECCC--------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred h-CCCCCCEEEEcCCCCCCcc---h----hhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEE
Confidence 2 1267999999975322111 0 01124567788999999999998543222 134455667788988876
Q ss_pred ecC-CCCCCCCcceeEEEee
Q 003302 182 DKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~KP-~sSR~~SaEiyvVc~g 200 (832)
+.. +.+.++..-.|++|-.
T Consensus 247 y~~~vPtyp~G~w~f~~aSk 266 (312)
T d2b2ca1 247 AQSIVSTYPSGSMGYLICAK 266 (312)
T ss_dssp EEEECTTSGGGEEEEEEEES
T ss_pred eeeccCCcCCccceeeEEEC
Confidence 543 3334333345777754
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=0.00051 Score=71.14 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||=||-|.|+.+..+.++.+ ...|++|||++.. .-+++..+.+|.... +.
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~---------l~ 148 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF---------LK 148 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH---------HH
T ss_pred CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH---------Hh
Confidence 4457899999999999998887654 4589999999721 136788888886542 22
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-C---HHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-D---YSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d---~~~ll~~L~~~F~~V~~ 181 (832)
....+.||+|++|..-..+. ...+ .....++.+.+.|+|||.||+-+-... + +..++..|...|..+..
T Consensus 149 ~~~~~~yDvIi~D~~dp~~~---~~~L----~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~ 221 (290)
T d1xj5a_ 149 NAAEGSYDAVIVDSSDPIGP---AKEL----FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVN 221 (290)
T ss_dssp TSCTTCEEEEEECCCCTTSG---GGGG----GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEE
T ss_pred hccccCccEEEEcCCCCCCc---chhh----CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhccccee
Confidence 21225799999997422111 1111 124566788999999999999653322 2 33455667777876654
Q ss_pred ec--CCCCCCCCcceeEEEee
Q 003302 182 DK--PAASRSASAEIYLLGIK 200 (832)
Q Consensus 182 ~K--P~sSR~~SaEiyvVc~g 200 (832)
+- +..+..+..-.|++|..
T Consensus 222 y~~~~vPty~~g~w~f~~as~ 242 (290)
T d1xj5a_ 222 YAWTSVPTYPSGVIGFMLCST 242 (290)
T ss_dssp EEEEECTTSGGGEEEEEEEEC
T ss_pred EeeEeeeeecCCceEEEEEeC
Confidence 31 23333333334566553
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00033 Score=69.28 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++..|||+|||.|-=+..+|-..| ...|+.||.+.- ..+.|+.++++.+.... ...
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------------~~~ 131 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------------SEP 131 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------------CCS
T ss_pred cCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc------------ccc
Confidence 356899999999988888887776 689999999841 25678999999888742 115
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
.||+|+|-+-.. ....+..+..+|++||.+++ +.+..+.
T Consensus 132 ~fD~V~sRA~~~---------------~~~ll~~~~~~l~~~g~~~~--~KG~~~~ 170 (207)
T d1jsxa_ 132 PFDGVISRAFAS---------------LNDMVSWCHHLPGEQGRFYA--LKGQMPE 170 (207)
T ss_dssp CEEEEECSCSSS---------------HHHHHHHHTTSEEEEEEEEE--EESSCCH
T ss_pred ccceehhhhhcC---------------HHHHHHHHHHhcCCCcEEEE--ECCCCHH
Confidence 789999975211 12456778999999999986 3444433
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00025 Score=74.77 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred HHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChh
Q 003302 27 SWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPE 95 (832)
Q Consensus 27 afKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~ 95 (832)
+-.|++....+--+.++.+||||+||.|.|+..|+.. ...|+|||+++. +.+.|+.|+.++....-
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~ 273 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 273 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhh
Confidence 3345544333333457889999999999999999976 459999999962 35778999999876631
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCC
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.. +. .....||+|+.||+
T Consensus 274 ~~------~~-~~~~~~d~vilDPP 291 (358)
T d1uwva2 274 TK------QP-WAKNGFDKVLLDPA 291 (358)
T ss_dssp SS------SG-GGTTCCSEEEECCC
T ss_pred hh------hh-hhhccCceEEeCCC
Confidence 10 00 11256799999975
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.00031 Score=68.22 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.9
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.||+|+|-. +- . +-.......++...+..|+|||.|++
T Consensus 131 ~~fDvI~CRN---VL-----i-Yf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 131 GPFDAIFCRN---VM-----I-YFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp CCEEEEEECS---SG-----G-GSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCccEEEeeh---hH-----H-hcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 6799999973 21 1 11123346788899999999999886
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.99 E-value=0.00022 Score=72.32 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++..||++|||+|.+|..|++. +..|+|||+++.. ..+++.++++|+.+... ...
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~-----------~~~ 92 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF-----------PNK 92 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC-----------CCS
T ss_pred CCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccc-----------ccc
Confidence 467889999999999999999988 3589999999731 23578999999988541 124
Q ss_pred cccEEEeCCCCCCC
Q 003302 111 AFDLVLHDGSPNVG 124 (832)
Q Consensus 111 ~FDlVlsDgapnv~ 124 (832)
.++.|++|-+.+.+
T Consensus 93 ~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 93 QRYKIVGNIPYHLS 106 (245)
T ss_dssp SEEEEEEECCSSSC
T ss_pred eeeeEeeeeehhhh
Confidence 55788998775543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.88 E-value=0.0014 Score=66.02 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|+|+|+|.|-=+..++-.+| +..|+.||.+.- ..+.++.++++.+..... ... ...
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~-------~~~-~~~ 140 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ-------RKD-VRE 140 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT-------CTT-TTT
T ss_pred CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccc-------ccc-ccc
Confidence 567999999999988888887777 679999999852 146788888876643210 000 125
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.||+|+|-+-. . +...+..+..+|++||.+++ +.+..
T Consensus 141 ~~D~v~sRAva------~---------l~~ll~~~~~~l~~~g~~i~--~KG~~ 177 (239)
T d1xdza_ 141 SYDIVTARAVA------R---------LSVLSELCLPLVKKNGLFVA--LKAAS 177 (239)
T ss_dssp CEEEEEEECCS------C---------HHHHHHHHGGGEEEEEEEEE--EECC-
T ss_pred cceEEEEhhhh------C---------HHHHHHHHhhhcccCCEEEE--ECCCC
Confidence 78999998521 0 13456788999999999986 44444
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.75 E-value=0.00037 Score=70.08 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+||++|||+|.+|..|+.. +..|+|||+++. ...+++.++++|+.+... .. .
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~--------~~---~ 84 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF--------PK---N 84 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC--------CS---S
T ss_pred CCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc--------cc---c
Confidence 468999999999999999999987 358999999962 135789999999987431 11 2
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
....|++|-+.|
T Consensus 85 ~~~~vv~NLPYn 96 (235)
T d1qama_ 85 QSYKIFGNIPYN 96 (235)
T ss_dssp CCCEEEEECCGG
T ss_pred ccceeeeeehhh
Confidence 235678886543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0051 Score=62.18 Aligned_cols=75 Identities=11% Similarity=-0.039 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++..||++|||+|.+|..|+.. +..|++||+++. ...+++.++++|+....+..... .. +
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~-~~-----~ 89 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE-KM-----G 89 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH-HH-----T
T ss_pred CCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccc-cc-----C
Confidence 467889999999999999999987 358999999962 12357999999998765443221 11 1
Q ss_pred cccEEEeCCCCCC
Q 003302 111 AFDLVLHDGSPNV 123 (832)
Q Consensus 111 ~FDlVlsDgapnv 123 (832)
.--.|++|.+.+.
T Consensus 90 ~~~~vvgNlPY~I 102 (252)
T d1qyra_ 90 QPLRVFGNLPYNI 102 (252)
T ss_dssp SCEEEEEECCTTT
T ss_pred CCeEEEecchHHH
Confidence 1147778876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.30 E-value=0.012 Score=56.71 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||-+||||.| .+..+++.++ ...|+++|.++.. ..-++..+. +-.+....+.+.....+ ..+|+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g---~g~D~ 97 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGE---PEVDC 97 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSS---SCEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCC---CCcEE
Confidence 5899999999999966 4455566665 5699999998732 112343332 22333334445544443 45699
Q ss_pred EEeCCCCCC--CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDGSPNV--GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDgapnv--~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+-...... ...+....... ...|..+.++++|||++++-
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~----~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAP----ATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCT----THHHHHHHHHEEEEEEEEEC
T ss_pred EEECccccccCCcccceeecCc----HHHHHHHHHHHhcCCEEEEe
Confidence 985432111 11222221111 23567889999999999873
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0099 Score=60.85 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C---CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P---IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++..||++|||+|..|..|+.. +..|++|++++.. . ..++.++.+|+.....
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~----------- 84 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL----------- 84 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----------
T ss_pred CCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-----------
Confidence 467889999999999999999988 3589999998621 1 2468899999987431
Q ss_pred cCCcccEEEeCCCC
Q 003302 108 GVRAFDLVLHDGSP 121 (832)
Q Consensus 108 ~~~~FDlVlsDgap 121 (832)
..+..|++|-+.
T Consensus 85 --~~~~~vV~NLPY 96 (278)
T d1zq9a1 85 --PFFDTCVANLPY 96 (278)
T ss_dssp --CCCSEEEEECCG
T ss_pred --hhhhhhhcchHH
Confidence 334788888653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.82 E-value=0.029 Score=51.94 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=+||||-|.. ..+++.+ +++|+++|.++.. .+-.-.++..+-...... .+...+....-..||
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~-~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEES-SIIERIRSAIGDLPN 100 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHH-HHHHHHHHHSSSCCS
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccc-hhhhhhhcccccCCc
Confidence 578999999999976654 4455555 4699999998632 111111222222221111 111222221114569
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+-.. ++ ..++..+.++|+|||++++-
T Consensus 101 ~vid~~----g~-------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 101 VTIDCS----GN-------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EEEECS----CC-------------HHHHHHHHHHSCTTCEEEEC
T ss_pred eeeecC----CC-------------hHHHHHHHHHHhcCCceEEE
Confidence 998532 11 12345678999999999973
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.73 E-value=0.026 Score=53.07 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCc-eEEEccCCChhHH---HHHHHHHhhc
Q 003302 38 SFLRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGA-VSLEQDITKPECR---ARVKKVMEEH 107 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V-~~i~gDIt~~~~~---~~l~~~L~~~ 107 (832)
.-+++|.+||=+|||| |.++..+++.++. ..|+++|.++.. .+ +. .++ |..+.... ..+.....+
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l-Ga~~vi--~~~~~~~~~~~~~i~~~~~~- 98 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI-GADLTL--NRRETSVEERRKAIMDITHG- 98 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT-TCSEEE--ETTTSCHHHHHHHHHHHTTT-
T ss_pred hCCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc-cceEEE--eccccchHHHHHHHHHhhCC-
Confidence 3467899999999986 4455666677642 389999998732 12 22 223 23322222 223322222
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..||+|+... |. . .++..+..+|+|||++++
T Consensus 99 --~g~Dvvid~v-----G~--~----------~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 99 --RGADFILEAT-----GD--S----------RALLEGSELLRRGGFYSV 129 (182)
T ss_dssp --SCEEEEEECS-----SC--T----------THHHHHHHHEEEEEEEEE
T ss_pred --CCceEEeecC-----Cc--h----------hHHHHHHHHhcCCCEEEE
Confidence 3579988532 11 1 123467899999999987
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.65 E-value=0.04 Score=51.90 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCc-eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGA-VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|..||=+|||| |.++..+++.++ ...|+.+|.++-. ..-+. .++...-.+. ....+...+.. +.||
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~-~~~~~~~~~~~---~G~d 100 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDCLNPRELDK-PVQDVITELTA---GGVD 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS-CHHHHHHHHHT---SCBS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCcccCCccchh-hhhhhHhhhhc---CCCc
Confidence 57899999999999 555666677765 4589999998743 11122 2232222221 22223333333 5579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC-cEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK-GTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG-G~fV~K 158 (832)
+|+-.. |. ..++..+.++|+|| |++++-
T Consensus 101 ~vie~~-----G~------------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 101 YSLDCA-----GT------------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp EEEESS-----CC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEEEec-----cc------------chHHHHHHHHhhcCCeEEEec
Confidence 998632 11 23456788999997 999883
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.34 E-value=0.011 Score=55.95 Aligned_cols=96 Identities=19% Similarity=0.308 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCc-eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGA-VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|..||=+|||| |.++..+++.++ ...|+++|.++.. ..-++ .++ |..+....+.+.....+ ..||
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t~g---~G~D 98 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVMKLTNG---KGVD 98 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHHHHTTT---SCEE
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccc--cccchhHHHHHHHHhhc---cCcc
Confidence 57888888899998 556666676654 3479999998632 11122 223 22333334445554443 3479
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+-.. ++. ..+..+..+|+|||++++.
T Consensus 99 ~vid~~----g~~-------------~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 99 RVIMAG----GGS-------------ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEECS----SCT-------------THHHHHHHHEEEEEEEEEC
T ss_pred eEEEcc----CCH-------------HHHHHHHHHHhcCCEEEEE
Confidence 988642 111 1234678999999999983
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.18 E-value=0.037 Score=58.74 Aligned_cols=92 Identities=21% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC---------------CceEEEccCCChh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR---------------GAVSLEQDITKPE 95 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~---------------~V~~i~gDIt~~~ 95 (832)
.+.+|||+.||+|+++..++...+ ...|+++|+++.. .+. .+.+.+.|+...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~- 122 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL- 122 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH-
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh-
Confidence 467899999999999998777766 4589999999631 111 123334444221
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+... -..||+|..|+. |.. ...|..|.+.++.||.+.+..
T Consensus 123 --------~~~~-~~~fDvIDiDPf---Gs~------------~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 123 --------MAER-HRYFHFIDLDPF---GSP------------MEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp --------HHHS-TTCEEEEEECCS---SCC------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred --------hHhh-cCcCCcccCCCC---CCc------------HHHHHHHHHHhccCCEEEEEe
Confidence 1111 156899999962 211 123446778899999998743
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.098 Score=48.37 Aligned_cols=100 Identities=21% Similarity=0.145 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC----CCCCce-EEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA----PIRGAV-SLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~----~i~~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.+|..||=+||||.|.+ ..++..++ ...|+++|.++.. .--+.. ++..+-.++...........+ ..||
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g---~g~D 99 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG---CKPE 99 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT---SCCS
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCC---CCce
Confidence 578999999999998864 44455554 3489999998632 111322 223322333222212111122 4569
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+|+.-. |. ..++..+..+|++||++++--+
T Consensus 100 vvid~~-----G~------------~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 100 VTIECT-----GA------------EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEEECS-----CC------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEecc-----CC------------chhHHHHHHHhcCCCEEEEEec
Confidence 988642 11 1235578899999999998433
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.049 Score=50.73 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcC-C-cCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCA-A-PGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGc-G-PGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||-.|| | -|..+..+++.+ ++.|++++.++-. .--++..+ .|..+....+.+.....+ ..||
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~---~g~d 99 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGE---KGID 99 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCT---TCEE
T ss_pred CCCCCEEEEEecccccccccccccccc--CcccccccccccccccccccCcccc-cccccccHHHHhhhhhcc---CCce
Confidence 679999999997 3 333445556665 4689999877521 01133222 245555555556555544 4579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... + ..+..+..+|+|||++|+
T Consensus 100 ~v~d~~g----~--------------~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 100 IIIEMLA----N--------------VNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEEESCH----H--------------HHHHHHHHHEEEEEEEEE
T ss_pred EEeeccc----H--------------HHHHHHHhccCCCCEEEE
Confidence 9997421 1 123456789999999997
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=92.57 E-value=0.017 Score=58.26 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=49.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------C------CCCceEEEccCCChhHHHHHHHH
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------P------IRGAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------~------i~~V~~i~gDIt~~~~~~~l~~~ 103 (832)
.+|||+.||.|..+.+++.. ++.|++|+-+|.. . ..+++++++|..+.
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~--------- 157 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------- 157 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH---------
T ss_pred CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH---------
Confidence 48999999999999999987 5789999999732 0 12578888886442
Q ss_pred HhhccCCcccEEEeCCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgapn 122 (832)
+... ...||+|..|+++.
T Consensus 158 L~~~-~~~~DvIYlDPMFp 175 (250)
T d2oyra1 158 LTDI-TPRPQVVYLDPMFP 175 (250)
T ss_dssp STTC-SSCCSEEEECCCCC
T ss_pred Hhcc-CCCCCEEEECCCCc
Confidence 2221 25689999999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.44 E-value=0.079 Score=48.68 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC----CCCCc-eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA----PIRGA-VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~----~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=+||||=|.+ ..+++.+ +..|+++|.++.. .--+. .++. .++....+.+..... +.++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~--~~~~~~~~~~~~~~~----g~~~ 96 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVN--ARQEDPVEAIQRDIG----GAHG 96 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEE--TTTSCHHHHHHHHHS----SEEE
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCcccccc--ccchhHHHHHHHhhc----CCcc
Confidence 578999888999886643 4455665 4699999998632 11122 2333 333333333433221 4446
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|++.+. . ..+..+.++|+|||++++
T Consensus 97 ~i~~~~~--------~----------~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 97 VLVTAVS--------N----------SAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp EEECCSC--------H----------HHHHHHHTTEEEEEEEEE
T ss_pred ccccccc--------c----------hHHHHHHHHhcCCcEEEE
Confidence 6665542 1 234467899999999987
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.23 E-value=0.062 Score=50.17 Aligned_cols=94 Identities=14% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=+|||+-|.+ ..+++.++ ...|+++|.++-. .+--..++.. .+......+..... +.||
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~Ga~~~i~~--~~~~~~~~i~~~t~----gg~D 98 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGATHVINS--KTQDPVAAIKEITD----GGVN 98 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTCSEEEET--TTSCHHHHHHHHTT----SCEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHcCCeEEEeC--CCcCHHHHHHHHcC----CCCc
Confidence 578999999999887743 33444444 4478888987632 1111233433 33334444544332 5679
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+-.. |. ...+..+..+|+|||++++
T Consensus 99 ~vid~~-----G~------------~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 99 FALEST-----GS------------PEILKQGVDALGILGKIAV 125 (174)
T ss_dssp EEEECS-----CC------------HHHHHHHHHTEEEEEEEEE
T ss_pred EEEEcC-----Cc------------HHHHHHHHhcccCceEEEE
Confidence 998542 11 1234567899999999987
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.04 E-value=0.2 Score=50.05 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=58.7
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
++||||+||-||++.-+... + --.|.++|+.+.. ..+ ..++++||++.... ....+|+++.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~~-~~~~~~Di~~~~~~----------~~~~~dll~~ 67 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNHS-AKLIKGDISKISSD----------EFPKCDGIIG 67 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHCC-SEEEESCTTTSCGG----------GSCCCSEEEE
T ss_pred CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHCC-CCCccCChhhCCHh----------HcccccEEee
Confidence 47999999999998777654 3 2256699999732 234 45678999985421 1245699998
Q ss_pred CCCCCC---CCCc--hhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 118 DGSPNV---GGAW--AQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 118 Dgapnv---~g~w--~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
.+++.. .|.. ..+. ...|....++ +...++|.-.++
T Consensus 68 g~PCq~fS~ag~~~g~~d~--r~~l~~~~~~-~i~~~~Pk~~~l 108 (324)
T d1dcta_ 68 GPPCQSWSEGGSLRGIDDP--RGKLFYEYIR-ILKQKKPIFFLA 108 (324)
T ss_dssp CCCCTTTSSSSCCCCSSSH--HHHHHHHHHH-HHHHHCCSEEEE
T ss_pred ccccccccccccccccccc--ccchHHHHHH-HHHhhCCceeec
Confidence 765432 1211 1121 2244445554 456788964443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.69 Score=45.35 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------C-CC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------A-PI--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~-~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.++|=-|++. |++..++..+ ..++.|+.+|.+.- . .. .++.++++|+++......+...+...
T Consensus 2 ~GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 79 (254)
T d2gdza1 2 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH- 79 (254)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence 477888888765 5555554443 34679999998741 1 12 24788999999987655554444322
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc-----cCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA-----PKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk-----pGG~fV~ 157 (832)
++.+|+++++........|....-....-.....+.+...|. .+|.+|.
T Consensus 80 ~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~ 133 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIIN 133 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEE
T ss_pred cCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 267899999986554444433211111112223344444443 2577776
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.43 E-value=0.18 Score=45.99 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQ-VAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq-~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||=.||||-|.+. .++... ++.|++++.++.. .--++..+.. .++......+..... +.+|+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~-~~~~~~~~~~~~~~~----~~~~~ 97 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVN-PLKEDAAKFMKEKVG----GVHAA 97 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEEC-TTTSCHHHHHHHHHS----SEEEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceecc-cccchhhhhcccccC----CCceE
Confidence 5789999999999988653 344443 4589999987632 1123333322 222222233333222 34455
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|++.+. ...+..+.++|+|||++++.
T Consensus 98 v~~~~~------------------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 98 VVTAVS------------------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EESSCC------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred EeecCC------------------HHHHHHHHHHhccCCceEec
Confidence 554331 12345788999999999974
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.90 E-value=0.13 Score=47.78 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCC
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~ 78 (832)
+++|..||=+|||++|.+ ..++..++ ...|+++|.++-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKD 64 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHH
Confidence 689999999999887754 33444443 579999999974
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.65 E-value=0.073 Score=52.38 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=40.4
Q ss_pred EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 86 SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 86 ~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
++++|+.. .| ..|++ +++|+|+.||+.+.+-. |.. +..-...+...+..+.++|+|||.+++-+
T Consensus 7 ~~~~D~le-----~l-~~l~d---~SIDliitDPPYn~~~~~~~~-~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 7 YDVCDCLD-----TL-AKLPD---DSVQLIICDPPYNIMLADWDD-HMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEECCHHH-----HH-HTSCT---TCEEEEEECCCSBCCGGGGGT-CSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEechHHH-----HH-hhCcC---CCccEEEECCCCCCCcccccC-HHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 55666543 23 23444 77899999998665421 211 11112334567889999999999999854
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.86 Score=44.78 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++.+||=.||+.| ++..++..+ ..++.|++++.++-. .. ..+.++++|+++......+...+...
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~- 86 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ- 86 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh-
Confidence 3678998998765 444444333 346799999987521 12 24788999999987665555544332
Q ss_pred CCcccEEEeCCCCC
Q 003302 109 VRAFDLVLHDGSPN 122 (832)
Q Consensus 109 ~~~FDlVlsDgapn 122 (832)
.+.+|+++++....
T Consensus 87 ~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 87 HSGVDICINNAGLA 100 (257)
T ss_dssp HCCCSEEEECCCCC
T ss_pred cCCCCEEEeccccc
Confidence 27789999998544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.11 Score=52.73 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=47.0
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCC-EEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGS-LVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~-~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.+||||+||.||++..|... +... .|.++|+.+.. ..|+..++++||.+.... .+.. ..+|+++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~-----~~~~---~~~Dll~ 73 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE-----EFDR---LSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHH-----HHHH---HCCSEEE
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHh-----HcCC---CCccEEE
Confidence 57999999999998776543 3232 47799998732 357788889999876432 1222 3459999
Q ss_pred eCCCCC
Q 003302 117 HDGSPN 122 (832)
Q Consensus 117 sDgapn 122 (832)
..+++.
T Consensus 74 ggpPCq 79 (343)
T d1g55a_ 74 MSPPCQ 79 (343)
T ss_dssp ECCC--
T ss_pred eecccc
Confidence 776543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.98 E-value=0.31 Score=45.42 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEeCCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQ-VAVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq-~La~~~p~~~~ViGVDLsp~ 78 (832)
+++|..||=.|||+.|.+. .+++.++ ...|+++|.++-
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKD 65 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHH
Confidence 5789999999999988653 4445543 469999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.83 E-value=0.21 Score=46.19 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 39 FLRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+++|..||-.|||+.|.+ ..+++.++ ...|+++|.++-. .+-...++..+ +. ....+...... ..|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ga~~~i~~~--~~-~~~~~~~~~~~---~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLGADHVVDAR--RD-PVKQVMELTRG---RGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTTCSEEEETT--SC-HHHHHHHHTTT---CCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhcccceeecCc--cc-HHHHHHHhhCC---CCc
Confidence 3678999999999998865 34444444 4589999998631 12122333322 21 12223332222 457
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+|+-... + ...+..+..+|++||++++.-+
T Consensus 102 d~vid~~g----~-------------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 102 NVAMDFVG----S-------------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEEEESSC----C-------------HHHHHHGGGGEEEEEEEEECCC
T ss_pred eEEEEecC----c-------------chHHHHHHHHHhCCCEEEEEeC
Confidence 99886431 1 1234567899999999997433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=89.73 E-value=0.17 Score=51.14 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.+.+||||+||.||++..|... +- -.|.++|+.+.+ ..|++ .++||++... .....+|+|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~-~~v~a~e~d~~a~~~~~~N~~~~--~~~Di~~~~~----------~~~~~~Dll 75 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GA-ECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNE----------KTIPDHDIL 75 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TC-EEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCG----------GGSCCCSEE
T ss_pred CCCeEEEECccccHHHHHHHHC-CC-eEEEEEeCCHHHHHHHHHHCCCC--CcCchhcCch----------hhcceeeee
Confidence 5789999999999998877543 32 256779998732 23443 3588887431 122457999
Q ss_pred EeCCCCCC---CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 116 LHDGSPNV---GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 116 lsDgapnv---~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+..+++.. .|......-....|....++ +...++|. +|++
T Consensus 76 ~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~kP~-~~~l 118 (327)
T d2c7pa1 76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIAR-IVREKKPK-VVFM 118 (327)
T ss_dssp EEECCCTTTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCS-EEEE
T ss_pred ecccccchhhhhhhhcCCcccchhHHHHHHH-HHhccCCc-EEec
Confidence 98775442 12111111111234445544 44677885 4554
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=89.62 E-value=0.72 Score=47.28 Aligned_cols=74 Identities=19% Similarity=0.053 Sum_probs=48.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC--CCCCEEEEEeC-CCCC--------------------------CCCCceEEEccCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV--PVGSLVLGLDL-VPIA--------------------------PIRGAVSLEQDITK 93 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~--p~~~~ViGVDL-sp~~--------------------------~i~~V~~i~gDIt~ 93 (832)
+|+||=. -|+|.++.++...+ ..+..|+|+|. .... ...++.++++|+++
T Consensus 2 ~MKVLIT-G~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVC-GGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEE-TTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEe-CCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 5788844 48898888776654 23568999994 2110 01247789999999
Q ss_pred hhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 94 PECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 94 ~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
.... ...+.. ...||+|+|-+++.
T Consensus 81 ~~~l---~~~~~~--~~~~d~ViH~Aa~~ 104 (383)
T d1gy8a_ 81 EDFL---NGVFTR--HGPIDAVVHMCAFL 104 (383)
T ss_dssp HHHH---HHHHHH--SCCCCEEEECCCCC
T ss_pred HHHh---hhhhhc--cceeehhhcccccc
Confidence 7653 333432 14579999988654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.58 E-value=0.37 Score=44.76 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEeCCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQ-VAVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq-~La~~~p~~~~ViGVDLsp~ 78 (832)
+++|..||=+||||.|.+. .+++.++ ...|+++|.++-
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~ 63 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKD 63 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHH
Confidence 6899999999999988653 3455554 468999999874
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.82 E-value=0.2 Score=51.61 Aligned_cols=56 Identities=14% Similarity=-0.066 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCceEEEccCCChhHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRA 98 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~ 98 (832)
.+..||++|+|+|.+|..|..... ...|++|++.+.. .-.++.++++|+.......
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~~~~~ 106 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYS 106 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhcchhh
Confidence 467899999999999999987632 2489999998621 2346899999998876443
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=88.25 E-value=0.66 Score=46.52 Aligned_cols=70 Identities=21% Similarity=0.045 Sum_probs=46.4
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CC-CCEEEEEeCCC-----CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PV-GSLVLGLDLVP-----IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~-~~~ViGVDLsp-----~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
|+||=.|+ +|.++.++++.+ .. ...|+++|... ....+++.++++|+++.... ...+. ..+|+|+
T Consensus 1 MKILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~---~~~~~----~~~d~Vi 72 (342)
T d2blla1 1 MRVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEW---IEYHV----KKCDVVL 72 (342)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHH---HHHHH----HHCSEEE
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHH---HHHHH----hCCCccc
Confidence 45676665 898888777654 22 24799999864 22357899999999875432 11111 2349999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
|-++.
T Consensus 73 h~a~~ 77 (342)
T d2blla1 73 PLVAI 77 (342)
T ss_dssp ECBCC
T ss_pred ccccc
Confidence 98764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.89 E-value=1 Score=41.05 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCcCHHHHH-HHHhCCCCCEEEEEeCCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQV-AVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~-La~~~p~~~~ViGVDLsp~ 78 (832)
+++|..||=+|||+++.+.. ++.... ...|+++|.++.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~ 64 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPD 64 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHH
Confidence 58899999999999776544 344443 568999999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.84 E-value=0.2 Score=46.10 Aligned_cols=38 Identities=8% Similarity=-0.080 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCC
Q 003302 40 LRSSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIA 79 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~ 79 (832)
+++|.+||-+|||+-| ++..+++.+ ++.|+++|.++..
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k 63 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRK 63 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTT
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhH
Confidence 5789999999998655 344445554 4689999998753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.74 E-value=2 Score=42.10 Aligned_cols=114 Identities=13% Similarity=0.023 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|++||=.||+.| ++..++..+ ..++.|+.++.+... .-..+.++++|++++.....+...+... +
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~-~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI-F 94 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH-h
Confidence 3688898888655 444443332 236789998887421 1245888999999976655554444322 2
Q ss_pred CcccEEEeCCCCCCCCCc---hhHHhHH-h----HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAW---AQEAMSQ-N----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w---~~D~~~q-~----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+..|+++++......+.+ ..+.+.. + .-....++.+...|..+|..++
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~ 150 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL 150 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccc
Confidence 678999999865433321 1111111 1 1123445667777888877765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=87.68 E-value=0.32 Score=48.26 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=42.7
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCch---hHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA---QEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~---~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..++||... . |...+.+++|+|+.||+.+.+..+. ..+...+..+...+..+.++|+|+|++++.+
T Consensus 14 ~l~~GD~le-----~----l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 14 SMYIGDSLE-----L----LESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp EEEESCHHH-----H----GGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEehhHHH-----H----HhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 567888543 2 2222337789999998776542221 1112223445678899999999999999854
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.12 E-value=0.28 Score=47.30 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC-c----hhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 86 SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA-W----AQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 86 ~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~-w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+++||+.+ .+. .|++ +++|+|+.||+.+.+.. | ....+ ...+...+..+.++|+|||.+++
T Consensus 7 i~~gDcle-----~l~-~lpd---~sVdliitdPPY~~~~~~~d~~~~~~~y--~~~~~~~~~e~~rvLk~~g~~~~ 72 (256)
T d1g60a_ 7 IHQMNCFD-----FLD-QVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEF--LAFTYRWIDKVLDKLDKDGSLYI 72 (256)
T ss_dssp EEECCHHH-----HHH-HSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHH--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccHHH-----HHh-hCcC---CCcCEEEECCCCCCCcCcCcCCCCHHHH--HHHHHHHHHHhhhccccCccccc
Confidence 46777643 222 3444 67799999998765432 2 12222 24456788899999999999876
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.64 E-value=0.15 Score=46.78 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcC-CcCHH-HHHHHHhCCCCCEEEEEeCCCCC----CCCCc-eEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCA-APGGW-MQVAVQRVPVGSLVLGLDLVPIA----PIRGA-VSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGc-GPGg~-sq~La~~~p~~~~ViGVDLsp~~----~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
++++..||=+|| |+.|. +..++..++ ...|++++.++-. ..-++ .++.. .+....+.+.....+ +.|
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~Ga~~~i~~--~~~~~~~~~~~~~~~---~~~ 98 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAGADYVINA--SMQDPLAEIRRITES---KGV 98 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHTCSEEEET--TTSCHHHHHHHHTTT---SCE
T ss_pred CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcCCceeecc--CCcCHHHHHHHHhhc---ccc
Confidence 578999999996 65554 444555554 3589999988632 11122 23333 333333444443333 457
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|+.... + . ..+..+..+|+|||++++-
T Consensus 99 d~vid~~g----~---~----------~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 99 DAVIDLNN----S---E----------KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEESCC----C---H----------HHHTTGGGGEEEEEEEEEC
T ss_pred hhhhcccc----c---c----------hHHHhhhhhcccCCEEEEe
Confidence 98886421 1 1 2334578999999999874
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.08 E-value=2.1 Score=41.07 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=59.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhh-ccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEE-HGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~-~~~~~FDlVlsDga 120 (832)
|.+||=.|++.| ++..+++.+ ..+..|+++|+..........++..+.......+.+...+.. ...+++|+++++..
T Consensus 2 gK~vlITGas~G-IG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG 80 (236)
T d1dhra_ 2 ARRVLVYGGRGA-LGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAG 80 (236)
T ss_dssp CCEEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCc
Confidence 678888887654 554444433 346789999987754333333344444433222222222211 11246799999864
Q ss_pred CCCC-C-Cch--hHHhH---Hh--HHHHHHHHHHHhhcccCcEEEE
Q 003302 121 PNVG-G-AWA--QEAMS---QN--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 121 pnv~-g-~w~--~D~~~---q~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.... . .+. .+.+. .. .-.....+.+...|++||.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~ 126 (236)
T d1dhra_ 81 GWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTL 126 (236)
T ss_dssp CCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeE
Confidence 2211 1 111 12221 11 1123455677788899999886
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=2.3 Score=41.37 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|++||=-||+.|.=...+......+..|+.+|.++-. .-+++.++.+|+++......+.+.+... .+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~-~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE-IGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-TCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH-cCC
Confidence 47888888888765322233333347789999988521 2246889999999987665555544332 367
Q ss_pred ccEEEeCCCCCC
Q 003302 112 FDLVLHDGSPNV 123 (832)
Q Consensus 112 FDlVlsDgapnv 123 (832)
.|+++++.....
T Consensus 85 idilinnag~~~ 96 (244)
T d1yb1a_ 85 VSILVNNAGVVY 96 (244)
T ss_dssp CSEEEECCCCCC
T ss_pred CceeEeeccccc
Confidence 899999986543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=85.00 E-value=0.54 Score=43.14 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCCc--CHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAP--GGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGP--Gg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+++|..||=.|+|+ |.++..+++.+ ++.|++++.++-. .+ ++..+ .|..+....+.+.....+ ..+
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l-Ga~~v-i~~~~~d~~~~v~~~t~g---~g~ 98 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA-GAWQV-INYREEDLVERLKEITGG---KKV 98 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH-TCSEE-EETTTSCHHHHHHHHTTT---CCE
T ss_pred CCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc-CCeEE-EECCCCCHHHHHHHHhCC---CCe
Confidence 67899999887665 34566666665 5699999998632 11 22211 245555555556554443 457
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+.... + + .+..+..+|+|+|++++
T Consensus 99 d~v~d~~g----~----~----------~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 99 RVVYDSVG----R----D----------TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEEECSC----G----G----------GHHHHHHTEEEEEEEEE
T ss_pred EEEEeCcc----H----H----------HHHHHHHHHhcCCeeee
Confidence 98886532 1 1 12346789999999887
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.93 E-value=1.4 Score=43.20 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=66.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
|.+|.=+--|.+|++..++..+- .++.|+.++.++-. .-.++.++++|+++......+...+... .+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~-~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE-YG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHh-cC
Confidence 55553343445666665554331 25689888877421 1246889999999987665555444332 26
Q ss_pred cccEEEeCCCCCCCCC---chhHHhHH-h----HHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGA---WAQEAMSQ-N----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~---w~~D~~~q-~----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++|++++|+....... ...+.+.. + --....++.++.+|+++|.+|.
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 7899999975332211 11111111 1 1123445667788899999775
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.79 E-value=2.8 Score=40.69 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.++|=.|++. |++..++..+ ..++.|+.++.++- ....++.++++|+++......+...+... ++.
T Consensus 5 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTL-GIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA-FGP 82 (251)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH-HSS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH-hCC
Confidence 367888777654 5555444332 23678999998741 12246889999999987665555444332 277
Q ss_pred ccEEEeCCCCCC
Q 003302 112 FDLVLHDGSPNV 123 (832)
Q Consensus 112 FDlVlsDgapnv 123 (832)
+|+++++.....
T Consensus 83 iDiLVnnAg~~~ 94 (251)
T d1zk4a1 83 VSTLVNNAGIAV 94 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceEEEecccccc
Confidence 899999985443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=84.70 E-value=3.5 Score=39.92 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|.++|=-|++. |++..++..+ ..++.|+.+|.++.. .. .++.++++|+++......+...+... ++.+|
T Consensus 5 gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~-~G~iD 82 (247)
T d2ew8a1 5 DKLAVITGGAN-GIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST-FGRCD 82 (247)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH-cCCCC
Confidence 67888778665 5555444433 236799999988642 11 35888999999987665555444332 26789
Q ss_pred EEEeCCCCCC
Q 003302 114 LVLHDGSPNV 123 (832)
Q Consensus 114 lVlsDgapnv 123 (832)
+++++.....
T Consensus 83 ilVnnAG~~~ 92 (247)
T d2ew8a1 83 ILVNNAGIYP 92 (247)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999975443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.45 E-value=4.1 Score=39.43 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------CCC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------API-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++. |++..++..+ ..++.|+.++.++- ... .++.++++|+++......+...+.. .++
T Consensus 9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~-~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT-EHK 86 (251)
T ss_dssp SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH-HCS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-hcC
Confidence 467888888665 5666555544 45679999998741 112 3588999999998766555544433 237
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|++++++...
T Consensus 87 ~iDilvnnag~~ 98 (251)
T d2c07a1 87 NVDILVNNAGIT 98 (251)
T ss_dssp CCCEEEECCCCC
T ss_pred Cceeeeeccccc
Confidence 889999997543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.38 E-value=1.4 Score=42.70 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.|.++|=.||+.+ |++..++..+ ..++.|+.++.+.-. ...++.++++|+++......+...+... ++
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g 85 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA-FG 85 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH-HS
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh-cC
Confidence 5788999998753 3444333322 236788888877421 1235778999999987655554443322 27
Q ss_pred cccEEEeCCCCCCC-----CCch--hHHhH-Hh----HHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVG-----GAWA--QEAMS-QN----ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~-----g~w~--~D~~~-q~----~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..|+++++...... ..+. .+.+. .+ .-+...++.+..+++.+|.+|.
T Consensus 86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~ 144 (256)
T d1ulua_ 86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVT 144 (256)
T ss_dssp SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEE
T ss_pred CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEE
Confidence 78999998743211 1111 11111 11 1123444556677888998875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.98 E-value=3.5 Score=40.23 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.|.++|=-|++. |++..++..+ ..++.|+.+|.++-. .-.++.++++|+++......+...+....-+
T Consensus 7 ~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 578999888775 4554444333 236799999987421 1235778899999987665554443322113
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
++|++++++...
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d2ae2a_ 86 KLNILVNNAGIV 97 (259)
T ss_dssp CCCEEEECCCCC
T ss_pred CceEEEECCcee
Confidence 679999997543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=1.8 Score=42.38 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.|.++|=.|++.| ++..++..+ ..++.|+.+|.+.- ..++++.++++|+++......+...+... ++..|+
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~iDi 82 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR-FGRLDC 82 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH-HSCCCE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHh-cCCCCE
Confidence 4788888887765 554444433 34679999998752 13568899999999987665555444332 267899
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
++++...
T Consensus 83 lVnnAG~ 89 (250)
T d1ydea1 83 VVNNAGH 89 (250)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 9999753
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.88 E-value=2.1 Score=40.86 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=59.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHh-hccCCcccEEEeCCCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVME-EHGVRAFDLVLHDGSP 121 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~-~~~~~~FDlVlsDgap 121 (832)
.+||=.||+ ||++..+++.+ ..+..|+++|.++-........+.+++............+. ....+++|+++++...
T Consensus 3 gkVlITGas-~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~ 81 (235)
T d1ooea_ 3 GKVIVYGGK-GALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG 81 (235)
T ss_dssp EEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCcc
Confidence 456656665 56665555443 23678999999875332233334455544332222221111 1123778999999753
Q ss_pred CCCC---Cch-hHHhHH---hHH--HHHHHHHHHhhcccCcEEEE
Q 003302 122 NVGG---AWA-QEAMSQ---NAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 122 nv~g---~w~-~D~~~q---~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
...+ .+. .+.+.. ..+ .....+.+...|++||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~ 126 (235)
T d1ooea_ 82 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQL 126 (235)
T ss_dssp CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEE
Confidence 2221 111 122211 111 23445677888999999886
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.86 E-value=1.9 Score=42.28 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC------CCC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI------API-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~------~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.|.++|=.|++.| ++..++..+ ..++.|+.+|.++- ..+ ..+.++++|+++......+...+... ++.+|
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD 81 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREE-FGSVD 81 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHH-HSCCC
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHH-cCCcc
Confidence 4788888888765 444333322 23679999998752 122 34788999999986655554444322 26789
Q ss_pred EEEeCCCCCC
Q 003302 114 LVLHDGSPNV 123 (832)
Q Consensus 114 lVlsDgapnv 123 (832)
++++++....
T Consensus 82 ilVnnAg~~~ 91 (254)
T d1hdca_ 82 GLVNNAGIST 91 (254)
T ss_dssp EEEECCCCCC
T ss_pred EEEecCcccc
Confidence 9999975443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.82 E-value=0.99 Score=41.31 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcC-C-cCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCA-A-PGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGc-G-PGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=.|+ | .|.++..++..+ ++.|+++..++-. ...++..+ .|..+......+.....+ ..||
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~---~g~d 96 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDG---YGVD 96 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTT---CCEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccccccccc-ccCCccCHHHHHHHHhCC---CCEE
Confidence 678999997774 2 233444455554 4688888766421 11233322 244555555566555443 4579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... + + .+..+..+|+++|++|+
T Consensus 97 ~v~d~~g----~----~----------~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 97 VVLNSLA----G----E----------AIQRGVQILAPGGRFIE 122 (183)
T ss_dssp EEEECCC----T----H----------HHHHHHHTEEEEEEEEE
T ss_pred EEEeccc----c----h----------HHHHHHHHhcCCCEEEE
Confidence 9997431 1 1 22356789999999997
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.37 E-value=1.6 Score=39.56 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCcCHH-HHHHHHhCCCCCEEEEEeCCCCCC----CCCc-eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGW-MQVAVQRVPVGSLVLGLDLVPIAP----IRGA-VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~-sq~La~~~p~~~~ViGVDLsp~~~----i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+++|.+||=.|||+.|. +..+++.++ ...|+++|.++-.. --++ .++...-....... ....... +.+|
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~-~~~~~~~---~g~D 100 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQE-VLIEMTD---GGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHH-HHHHHTT---SCBS
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHH-HHHHHcC---CCCc
Confidence 68999999999987664 344455554 46899999887431 0122 22222111111222 2222222 5579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+-.. ++ ..++..+..++++||.+++
T Consensus 101 ~vid~~----G~-------------~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 101 YSFECI----GN-------------VKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp EEEECS----CC-------------HHHHHHHHHTBCTTTCEEE
T ss_pred EeeecC----CC-------------HHHHHHHHHhhcCCceeEE
Confidence 999742 11 1234567889999988876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.31 E-value=2.4 Score=41.54 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=52.9
Q ss_pred hcCCCCCCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 36 KFSFLRSSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 36 kf~fl~~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+|++ .|.++|=.|++. |++..++..+ ..++.|+.++.++-. ...++.++.+|+++......+...+
T Consensus 3 ~F~L--kgK~alVTGas~-GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 3 RWSL--KAKTVLVTGGTK-GIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp TTCC--TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCC--CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHH
Confidence 4553 578888788765 4554444332 346799999987421 1246889999999987655554443
Q ss_pred hhccCCcccEEEeCCCC
Q 003302 105 EEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgap 121 (832)
.....+.+|+++++...
T Consensus 80 ~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHTTCCSEEEEECCC
T ss_pred HHHhCCCcccccccccc
Confidence 32212567999999753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.99 E-value=3.9 Score=39.85 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.++|=.|++.| ++..++..+ ..++.|+.+|.+.- .....+.++++|++++.....+...+... ++.
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK-HGK 82 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH-HSC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence 4788898897754 555554433 34679999998742 12234778899999976555544433322 277
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+++++...
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 8999998753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.81 E-value=1.2 Score=41.05 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEcCCcCH--HHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 39 FLRSSHAVLDLCAAPGG--WMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg--~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
-+++|++||=.|++.|. ++..+++.+ +++||++..++-. ..-++..+ .|..+......+...... ..+
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~~~~~~~~---~Gv 99 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASP---DGY 99 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCT---TCE
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhh-cccccccHHHHHHHHhhc---CCC
Confidence 36899999977776533 556667775 4699999877521 11122211 122222222333333333 457
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+-.. ++ ..+..+..+|+|||++++
T Consensus 100 d~v~D~v----G~--------------~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 100 DCYFDNV----GG--------------EFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp EEEEESS----CH--------------HHHHHHGGGEEEEEEEEE
T ss_pred ceeEEec----Cc--------------hhhhhhhhhccCCCeEEe
Confidence 9998642 21 123457899999999997
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.69 E-value=2.3 Score=41.36 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
.|.++|=-|++. |++..++..+ ..++.|+.+|.++-. .-.+..++++|+++....+.+...+... +++.|+++
T Consensus 4 ~GK~alITGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~G~iDiLV 81 (248)
T d2d1ya1 4 AGKGVLVTGGAR-GIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYA-LGRVDVLV 81 (248)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH-HSCCCEEE
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh-cCCCCeEE
Confidence 477888888654 5555544433 346799999987632 1125678899999986655544433322 27789999
Q ss_pred eCCCCC
Q 003302 117 HDGSPN 122 (832)
Q Consensus 117 sDgapn 122 (832)
++....
T Consensus 82 nnAG~~ 87 (248)
T d2d1ya1 82 NNAAIA 87 (248)
T ss_dssp ECCCCC
T ss_pred EeCcCC
Confidence 997543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.56 E-value=3.4 Score=40.15 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C-----CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P-----IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.++|=-|++.| ++..++..+ ..++.|+.+|.+.-. . -..+.++++|+++......+...+... +
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~-~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK-F 81 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH-c
Confidence 4788898887754 554444332 236789999987421 1 135788999999987665555444332 2
Q ss_pred CcccEEEeCCCCC
Q 003302 110 RAFDLVLHDGSPN 122 (832)
Q Consensus 110 ~~FDlVlsDgapn 122 (832)
+.+|+++++....
T Consensus 82 g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 82 GKLDTVVNAAGIN 94 (251)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 6789999997543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.56 E-value=2.1 Score=43.59 Aligned_cols=72 Identities=21% Similarity=0.104 Sum_probs=47.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCC---------------CCCC------------CCCceEEEccCCCh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLV---------------PIAP------------IRGAVSLEQDITKP 94 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLs---------------p~~~------------i~~V~~i~gDIt~~ 94 (832)
|++||=.|+ +|.++.+|+..+ ..+..|+|+|-. +... .+++.++.+|+++.
T Consensus 1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 678886664 898887776554 235689999821 1111 14689999999997
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
.... ..+.. ..+|+|+|-++.
T Consensus 80 ~~l~---~~~~~---~~~d~ViHlAa~ 100 (393)
T d1i24a_ 80 EFLA---ESFKS---FEPDSVVHFGEQ 100 (393)
T ss_dssp HHHH---HHHHH---HCCSEEEECCSC
T ss_pred HHHH---HHHHh---hcchheeccccc
Confidence 6543 33443 245999998764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.13 E-value=2.5 Score=40.97 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.|.++|=.|++.| ++..++..+ ..+..|+.+|.++- ..++++.+++.|+++....+. .+. .++++|+
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~---~~~--~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATER---ALG--SVGPVDL 79 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHH---HHT--TCCCCCE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---HHH--HhCCceE
Confidence 5789998897754 554444433 23679999998752 135688899999999765433 333 2377899
Q ss_pred EEeCCCCC
Q 003302 115 VLHDGSPN 122 (832)
Q Consensus 115 VlsDgapn 122 (832)
+++++...
T Consensus 80 lVnnAg~~ 87 (244)
T d1pr9a_ 80 LVNNAAVA 87 (244)
T ss_dssp EEECCCCC
T ss_pred EEeccccc
Confidence 99997544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.94 E-value=2.6 Score=41.01 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.|.++|=-|++ +|++..++..+ ..++.|+.+|.++-. .+ ..+.++++|+++......+...+... ++.+|
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~g~iD 82 (253)
T d1hxha_ 5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRR-LGTLN 82 (253)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHH-HCSCC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHH-hCCCC
Confidence 36788877765 45555444433 246799999987521 12 34778899999987666555544332 27789
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+++++....
T Consensus 83 ilVnnAG~~ 91 (253)
T d1hxha_ 83 VLVNNAGIL 91 (253)
T ss_dssp EEEECCCCC
T ss_pred eEEeccccc
Confidence 999998644
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.74 E-value=2.3 Score=41.22 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.|+++|=-|++. |++..++..+ ..++.|+.++.++-. .+ .++.++++|+++......+...+... ++..|
T Consensus 3 ~gK~alITGas~-GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD 80 (243)
T d1q7ba_ 3 EGKIALVTGASR-GIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAE-FGEVD 80 (243)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH-TCSCS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc-cCCcc
Confidence 467888778765 4555444333 246789999987521 11 35778999999976655554444332 37789
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
++++++...
T Consensus 81 ilVnnAg~~ 89 (243)
T d1q7ba_ 81 ILVNNAGIT 89 (243)
T ss_dssp EEEECCCCC
T ss_pred eehhhhhhc
Confidence 999997544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=80.44 E-value=0.93 Score=41.31 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|.+||=+|||+=| ++..+++.+ ++.++++|.++-.. --+...+ .|..+.... ......||+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad~~-i~~~~~~~~--------~~~~~~~D~ 96 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEV-VNSRNADEM--------AAHLKSFDF 96 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEE-EETTCHHHH--------HTTTTCEEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCcEE-EECchhhHH--------HHhcCCCce
Confidence 5789999989987644 444555555 45788888776321 0122211 133332211 111256799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+... ++.. .+..+..+|+|||++++-
T Consensus 97 vid~~----g~~~-------------~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 97 ILNTV----AAPH-------------NLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEECC----SSCC-------------CHHHHHTTEEEEEEEEEC
T ss_pred eeeee----ecch-------------hHHHHHHHHhcCCEEEEe
Confidence 88642 1111 123577899999999973
|