Citrus Sinensis ID: 003353
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SAK0 | 836 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.978 | 0.775 | 0.0 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.546 | 0.525 | 0.280 | 4e-50 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.525 | 0.508 | 0.285 | 1e-48 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.649 | 0.616 | 0.231 | 4e-39 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.674 | 0.733 | 0.241 | 1e-37 | |
| Q9LW84 | 642 | Pentatricopeptide repeat- | no | no | 0.552 | 0.711 | 0.228 | 5e-36 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.432 | 0.321 | 0.275 | 7e-36 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.436 | 0.509 | 0.262 | 5e-34 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.643 | 0.579 | 0.227 | 2e-33 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.717 | 0.687 | 0.223 | 1e-32 |
| >sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/836 (77%), Positives = 727/836 (86%), Gaps = 18/836 (2%)
Query: 1 MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRL-DYGETQN 58
MIR R K+ PRN+ +L+++ P I N K + SF+ RL Y +N
Sbjct: 1 MIRGRTAKVIPRNVIFTLSRSSISESPL----ISPSRINPKLAGSFSFNIRLLSYFTVRN 56
Query: 59 -FVKDAIFFRKPNYV----------RSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGK 107
F D R PN+V R +CS K G E WTEE+EYLDESGSV+++GK
Sbjct: 57 GFCPDCSVPRDPNFVGLTTQCRSIVRRFCSEKIGSSESSG-WTEEVEYLDESGSVLHSGK 115
Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
GIRSVEPG DDHVMVGG+KKP++NAS+VAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 116 GIRSVEPGLDDHVMVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 175
Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 176 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 235
Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
S +G F+AYN+VIQYLAKA+KLE+++CCFKK +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 236 SSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 295
Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
KAFEIYESMEK + LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER RPSF++F+SLV
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355
Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415
Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
PNFGL+TMIIESHAKSGKL++AM++F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
YNSMT+AGLRPGLS+Y +LLTLLA ++LVDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535
Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595
Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
TS+LAHLVRCQDE ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 596 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 655
Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 656 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 715
Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL
Sbjct: 716 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 775
Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
RAPG+ VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 776 RAPGELVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 831
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 233/471 (49%), Gaps = 19/471 (4%)
Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
DG TY M+ +L ++ + A KL EM +P+ + L+ S G+A L+ +M V+
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422
Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
+MQ G +P Y +LI+ +AKAG LD A+ ++ M+ G P+ +++II K+
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482
Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
G L A +F +M G P TY+ ++++HA + +A+KLY M +AG P TY
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542
Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
+ ++ +L ++ A + EM+ + D +L+ ++ K G+V+ A +W + M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH 602
Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
+G+R N L + ++ A LL+ + + L YT +L+ + + +
Sbjct: 603 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662
Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGP--EQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
++++T H AH FL + GP E + +F+ + H D E + G V
Sbjct: 663 MGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFL-DLMHSEDRESKRG----LV 717
Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
+ ++++L GQ A VW+VA + +FP A+ W +++ +S G A+ A+ T
Sbjct: 718 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 777
Query: 720 LHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPF 760
L FRK+ML G P RI +VTG ++ + ++L+ SPF
Sbjct: 778 LAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPF 828
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 7/442 (1%)
Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
DG TY M+ +L ++ + KL EM +P+ + L+ S G+A L +M V+
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417
Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
+MQ G P Y +LI+ +AKAG LD A+ ++ M+ AG P+ +++II K+
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
G L A +F +M G P T++ ++ +HA + ++A+KLY M +AG +P TY
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
+ ++ +L ++ A + EM+ + D +L+ ++ K G+VD A +W + M
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQ 597
Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
+G+R N L + ++ A LL++ + L YT +L+ + +
Sbjct: 598 AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 657
Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPE-QRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
+++ + H AH FL + GP+ Q+ + +S +F H D E + G ++
Sbjct: 658 MGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRG----LMD 713
Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
++++L G A VW+VA ++P A+ + W +++ +S G A+IA+ TL
Sbjct: 714 AVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTL 773
Query: 721 HRFRKRMLYYGVVPRRIKLVTG 742
FRK+ML G P RI +VTG
Sbjct: 774 AWFRKQMLVSGDCPSRIDIVTG 795
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/596 (23%), Positives = 253/596 (42%), Gaps = 59/596 (9%)
Query: 126 KKPFL---NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
+KP+ N V I V+ WGP E L L F P+ + L+ + D + ++
Sbjct: 24 EKPYTFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIE 83
Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV------------------ 224
FRW +R++ E Y L V+ R+FD + + EM
Sbjct: 84 YFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGC 143
Query: 225 --HDSSKNGISL------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
+ + G + FSAY +I + + +M F+++ + +
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
+ L+ F +G A + + M+ D Y + I S K G++D A K F E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
++ +P + S++ + KA RLD +++++ ++ P Y ++I Y AGK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
D A L + R G P+ + I+ K GK+D A+ +F +M++ P STY+
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNI 382
Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
L++M +G++D+A +L +SM AGL P + T ++ L K + +D A + EM
Sbjct: 383 LIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV 442
Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
+ D ++ ++ K G VD A + M S RTN+ + L ++ + E
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPE 629
+ + + DL L + + + + + + R + + KA F+ P+
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI-----KARRFV------PD 551
Query: 630 QRKQPVL--SFVREFFHGIDYEL-----EEGA---ARYFVNVLLNYLVLMGQINRA 675
R +L ++ F YEL E+G R + N++++ G++N+A
Sbjct: 552 ARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY-NIVIDGFCKCGKVNKA 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/592 (24%), Positives = 259/592 (43%), Gaps = 34/592 (5%)
Query: 125 IKKPFLNASAVAK---------IVEVVNRWKWG-PELETQLDKLQFVPKMV-HITQALKV 173
I+ PF+ S + I +VV+ W P LE D L P V + LK
Sbjct: 62 IRYPFVTKSGTSTYSEDFDRDWIRKVVHNDLWDDPGLEKLFD-LTLAPIWVPRVLVELK- 119
Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD------- 226
D + F+W+ ++ + E Y ++ +L +R + S+ EMV
Sbjct: 120 -EDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVF 178
Query: 227 ----SSKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
S++N + F ++ + L LE + CF K+ T+S N L+ F
Sbjct: 179 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA 238
Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
G ++ M TY +MI + K G ++AA LF+EMK R P
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTV 298
Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
+ S++D GK GRLD ++ + EM+ P Y +LI + K GKL L + EM
Sbjct: 299 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM 358
Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
+ G +PN ++ ++++ K G + A+ + DM R G +P TY+ L++ + G +
Sbjct: 359 KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 418
Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
A +L N M G+ + TYTAL+ L + + A ++ +M T G ++++ + L
Sbjct: 419 SDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL 478
Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
+ ++K ++D AL L + GI+ + + E+AK ++ E
Sbjct: 479 IHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538
Query: 581 KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTGPEQRKQPVLSFV 639
K + ++YT+++ + + HL+ + + C L G + K ++S
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNK--LVSKA 596
Query: 640 REFFHGI--DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689
++F+ I D+ L+ AA + +++ L Q+ A +++ + L P
Sbjct: 597 VDYFNRISNDFGLQANAAIF--TAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 220/499 (44%), Gaps = 42/499 (8%)
Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
+ + +V +KWGP+ E L+ L+ + L++ + + + F+WA ++ +
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEMSY 255
Y+ L L E+R + M E+V ++ +S+ A + +++ L +A + +
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY---VSVSPAVLSELVKALGRAKMVSKAL 182
Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPS 314
F + CK + +YN ++ + + +G K E+Y M +G+C D TY +I S
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242
Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
K GR D+AI+LF EMK+ +P+ I+ +L+ K G+++ ++ ++ EM+ G P+
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302
Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
Y LI+ KAG++D A + +M G P+ ++ K G+++ ++F+
Sbjct: 303 VYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFS 362
Query: 435 DMERAGFLPT----------------------------------PS--TYSCLLEMHASS 458
+M PT PS TYS L++ + +
Sbjct: 363 EMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT 422
Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
+V+ A+ L M G P + Y +L+ L K K + A ++ E+K +V
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482
Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
V++ + K G + A+ M + G + + L +K + A LL E
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEE 542
Query: 578 SAAKVDLVLYTSVLAHLVR 596
+ + D+ + +L R
Sbjct: 543 NGCRADINSHNIILNGFAR 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 179/363 (49%), Gaps = 5/363 (1%)
Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
GD V + + + G +LF++ D YN +I L +AD +E++
Sbjct: 748 GDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQ--PKLPTYNLLIGGLLEADMIEIAQ 805
Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
F +V + C D +YN L+ + G + FE+Y+ M EC + T+ ++I L
Sbjct: 806 DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865
Query: 316 AKSGRLDAAIKLFQE-MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
K+G +D A+ L+ + M +R+F P+ + L+D + K+GRL + +++ M G RP+
Sbjct: 866 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925
Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
+Y LI + KAG+ D A L+ M G RP+ ++++++ G++D + F
Sbjct: 926 CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985
Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLSTYTALLTLLAKR 493
+++ +G P Y+ ++ S +++ A+ L+N M TS G+ P L TY +L+ L
Sbjct: 986 ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
+V+ A KI E++ G +V + L+ Y G +HA + M + G N
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Query: 553 RQL 555
QL
Sbjct: 1106 EQL 1108
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 1/362 (0%)
Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
+I LA + + + F+++ S K T++YN L+ ++ G A + MEK
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 369
Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
S D TY L+I + +GR ++A + +EM+ + +P+ +F+ L+ G +
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429
Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
+V EM+ G +P Y +I+++ K LD A+ +D M G P+ + +I+ H
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489
Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
K G+ +A +F MER G LP +TY+ ++ + + D +L M S G+ P +
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549
Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
T+T L+ + K + A + L EMK++G + + L+ Y + G + A+ R
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609
Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
M S G++ + + L + ++ A +L+ E+ K D+V YT+++ L+R
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Query: 600 EQ 601
Q
Sbjct: 670 FQ 671
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/597 (22%), Positives = 259/597 (43%), Gaps = 65/597 (10%)
Query: 238 YNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
YN VI K + + F ++ + + D ++N L+ + GL A +++ M
Sbjct: 306 YNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365
Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
D +Y ++ ++ K G++D A ++ +M + P+ +++++D KAGR
Sbjct: 366 TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRF 425
Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
D ++ ++ EM+ G Y +L+ Y K G+ + AL + EM G + + + +
Sbjct: 426 DEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485
Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
+ + K GK D +FT+M+R LP TYS L++ ++ G AM+++ SAGL
Sbjct: 486 LGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGL 545
Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
R + Y+AL+ L K LV A ++ EM G S + V+ + ++ + + ++D +
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605
Query: 536 W-----LRFMG---SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA------- 580
+ L F S+ T V QLF + + K E E +
Sbjct: 606 YSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRK 665
Query: 581 ------KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQP 634
K ++V ++++L RC ++ L+ L +K + + GL G +++
Sbjct: 666 MHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMG---QREN 722
Query: 635 VLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI---------NRARCVWKVAYEN 685
V + F ++ E++ A F N L + L GQ R+R VW+ + +
Sbjct: 723 VWLQAQSLFDKVN-EMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSD 781
Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTG-- 742
LD+ +S GAA V L R ++Y G +P+ + ++TG
Sbjct: 782 SC--------------LDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWG 826
Query: 743 --------PTLKIVIAQMLSSVESPFEVSKVVL---RAPGDSVMEWFKKPIVQQFLL 788
L+ + +L +++PF +SK + + G V W ++ + L+
Sbjct: 827 KHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLI 883
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 155/692 (22%), Positives = 270/692 (39%), Gaps = 99/692 (14%)
Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSLS 182
V + K+ ++E+ ++KL +P I + L + D SL
Sbjct: 67 VEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLR 126
Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
LF++ +RQ W P + Y ++ +L D L +FDEM S S+FS Y +I
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM--PSQGVSRSVFS-YTALI 183
Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKGEC 301
+ + E S ++ + +YN ++ GL ++ ++ M
Sbjct: 184 NAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGI 243
Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
D TY ++ + A G D A +F+ M + P ++ LV++ GK RL+
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCD 303
Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
+ EM G P Y L+E+YAK+G + A+ ++ +M+ AG PN +++++
Sbjct: 304 LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363
Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
+SG+ D +F +M+ + P +TY+ L+E+ G + L++ M + P +
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFM 540
TY ++ K L + A KIL M A + V+ + + + AL M
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES------------------AAKV 582
G + L S + L + ++ +L V+S K
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSA--------------TKHKAHAFL------C 622
+ + T V RC + +ER L A+LS + KA L C
Sbjct: 544 EEAVKTYVDMEKSRC--DPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYC 601
Query: 623 GLFT--GPEQRKQPVLSFVREFFHG-------------------------IDYELEE--- 652
+ G +R V + E ++Y L++
Sbjct: 602 MMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNS 661
Query: 653 ---GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
G F N LL+ L +GQ RA V A + LFP+ + + WS+DV +S
Sbjct: 662 EGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE-LFRKNKLVWSVDVHRMSE 720
Query: 710 GAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT 741
G A+ L+ ML G +P+ +V+
Sbjct: 721 GGMYTALSVWLNDIND-MLLKGDLPQLAVVVS 751
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | ||||||
| 224112321 | 785 | predicted protein [Populus trichocarpa] | 0.939 | 0.989 | 0.842 | 0.0 | |
| 255582603 | 841 | pentatricopeptide repeat-containing prot | 0.985 | 0.969 | 0.784 | 0.0 | |
| 15219388 | 836 | pentatricopeptide repeat-containing prot | 0.989 | 0.978 | 0.775 | 0.0 | |
| 225446845 | 844 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.954 | 0.781 | 0.0 | |
| 297839813 | 832 | EMB2217 [Arabidopsis lyrata subsp. lyrat | 0.984 | 0.978 | 0.770 | 0.0 | |
| 356573733 | 752 | PREDICTED: pentatricopeptide repeat-cont | 0.904 | 0.994 | 0.830 | 0.0 | |
| 449442096 | 823 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.929 | 0.794 | 0.0 | |
| 302143554 | 765 | unnamed protein product [Vitis vinifera] | 0.879 | 0.950 | 0.771 | 0.0 | |
| 357165906 | 775 | PREDICTED: pentatricopeptide repeat-cont | 0.886 | 0.945 | 0.582 | 0.0 | |
| 414585491 | 787 | TPA: hypothetical protein ZEAMMB73_91798 | 0.885 | 0.930 | 0.588 | 0.0 |
| >gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1380 bits (3573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/779 (84%), Positives = 717/779 (92%), Gaps = 2/779 (0%)
Query: 45 TSFSSRLDYGETQNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIY 104
S S ++ ++ N V + + ++VR+YC+GK+G+ EWTE+IEYLDESGSVIY
Sbjct: 4 NSISPKVSPSKSPNLVSNGGHVKANSFVRNYCAGKNGEA-GSGEWTEDIEYLDESGSVIY 62
Query: 105 TGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKM 164
+GKGIRSVEPG DDHVM+GG+KKP LNASAVAKIVEVV RWKWGPELETQLDKLQFVP M
Sbjct: 63 SGKGIRSVEPGVDDHVMIGGLKKPILNASAVAKIVEVVKRWKWGPELETQLDKLQFVPNM 122
Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
H+ QALK+IN+SD LSLF+WAKRQ+WYVP DECYVMLFD LN+SRDFDG+ SLFDEMV
Sbjct: 123 THVVQALKIINESDALLSLFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMV 182
Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
DS K+ FSAYNRV++YLAKA+KLE+S+CCFKKV DS CKIDT++YN+LM LFLNKG
Sbjct: 183 CDSIKSATQ-FSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKG 241
Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
LPYKAFEIYE+ME CSLD STYELMIPSLAKSGRLDAA KLFQEMKERNFRPS IF+
Sbjct: 242 LPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFS 301
Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
SLVDSMGKAGRL+TSMKVYMEMQG G RPSA MYVSLIESY KAGKLD ALRLWDEM+IA
Sbjct: 302 SLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIA 361
Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
GFRPNFGL+T+IIESHAKSGKLDIAMSIF DME+AGFLPTPSTYS LLEMHA+SGQVD+A
Sbjct: 362 GFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAA 421
Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
MKLYNSMT+AGLRPGLSTYTALLTLLA +KLVDVAAKILLEMK MG+SVDVSASDVLMVY
Sbjct: 422 MKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSASDVLMVY 481
Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
IKDGSVD +LRWLRFM SSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL
Sbjct: 482 IKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDL 541
Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
+LYTS+LA+LVRCQ+EQNERHLMAILSAT+HKAHAF+CGLFTGPEQRKQPVLSFVREFF
Sbjct: 542 ILYTSILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGLFTGPEQRKQPVLSFVREFFQ 601
Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 704
GIDYELEEGAA+YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV
Sbjct: 602 GIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 661
Query: 705 RNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSK 764
RNLSVGAAL+AV+HTLHRFRKRMLYYGV+PRRIKLVTGPTL+IV+AQMLSSVESPFEVSK
Sbjct: 662 RNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTGPTLRIVVAQMLSSVESPFEVSK 721
Query: 765 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMH++NILFP SAPE+RSLSPPKPLI
Sbjct: 722 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHRLNILFPTSAPEIRSLSPPKPLI 780
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1352 bits (3498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/838 (78%), Positives = 725/838 (86%), Gaps = 23/838 (2%)
Query: 7 KLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFS--------------SRLD 52
+LCP +LY L KNP ++ FH++ + F + +T F S
Sbjct: 6 RLCPPHLY-KLAKNPGYKPYFHASISQNSSFRTNGVIDTWFQFNSPRSILGLHLFPSIFS 64
Query: 53 YGETQNFV------KDAIFFRKPNY-VRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYT 105
+ NF+ D + K +Y R+YCSG +G +WTE+IEYLDESGSVIY+
Sbjct: 65 LSKNPNFLFHTKYATDIPYCSKDSYFARNYCSGNINEGGSA-KWTEDIEYLDESGSVIYS 123
Query: 106 GKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMV 165
GKGIRSVEPG DDHVMVGG+KKPFLN +AVAKIVE+V RWKWGPELETQLDKLQFVP M
Sbjct: 124 GKGIRSVEPGLDDHVMVGGLKKPFLNVAAVAKIVEIVKRWKWGPELETQLDKLQFVPSMT 183
Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
H+ QALK+IND+D LSLF+WAKRQ+WYV DECY +LFD LN+ RDFDG+ SLFDEMV
Sbjct: 184 HVVQALKIINDADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQ 243
Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
DSSK GIS AYNRVIQ+LAKA+KLE+S+CCFKKV DS CKIDTQ+YN L+T FLNKGL
Sbjct: 244 DSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGL 303
Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
PYKAFEIYESM+ +CSLD STYELMIPSLAKSGRLD A KLFQEMKER RPSF IF+S
Sbjct: 304 PYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSS 363
Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
LVDSMGK+GRLDTSMK+YMEMQG G R SA MYVSLIESY KAGKLDTALRLWDEM+ AG
Sbjct: 364 LVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAG 423
Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
FRPN+GL+T+IIESHAKSGKLDIA SIF DM++AGFLPTPSTYSCLLEMHA+SGQVDSAM
Sbjct: 424 FRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAM 483
Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
KLYNSMT+AGL+PGLSTYTALLTLLA +KLVDVAAKILLEMK MG+SVDVSASDVLMVYI
Sbjct: 484 KLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYI 543
Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
KDGSVD ALRWL FMGSSGIRTNNFI+RQLFESCMK LYESAKPLLETYV SAAKVDL+
Sbjct: 544 KDGSVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLETYVNSAAKVDLI 603
Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG 645
LYTS+LA+LVRCQ+EQ+ERHLM+IL AT+HKAHAF+CGLFTGPEQR+QPVL FVREFF G
Sbjct: 604 LYTSILANLVRCQEEQHERHLMSILGATRHKAHAFMCGLFTGPEQRQQPVLFFVREFFQG 663
Query: 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 705
IDY+LEEGAA+YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR
Sbjct: 664 IDYDLEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 723
Query: 706 NLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKV 765
NLSVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQMLSSVESPFEVSKV
Sbjct: 724 NLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLSSVESPFEVSKV 783
Query: 766 VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHK+N LFP SAPE+RSL+P KPLI
Sbjct: 784 VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKLNTLFPSSAPEIRSLAPNKPLI 841
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE 2217; Flags: Precursor gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana] gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/836 (77%), Positives = 727/836 (86%), Gaps = 18/836 (2%)
Query: 1 MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRL-DYGETQN 58
MIR R K+ PRN+ +L+++ P I N K + SF+ RL Y +N
Sbjct: 1 MIRGRTAKVIPRNVIFTLSRSSISESPL----ISPSRINPKLAGSFSFNIRLLSYFTVRN 56
Query: 59 -FVKDAIFFRKPNYV----------RSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGK 107
F D R PN+V R +CS K G E WTEE+EYLDESGSV+++GK
Sbjct: 57 GFCPDCSVPRDPNFVGLTTQCRSIVRRFCSEKIGSSESSG-WTEEVEYLDESGSVLHSGK 115
Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
GIRSVEPG DDHVMVGG+KKP++NAS+VAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 116 GIRSVEPGLDDHVMVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 175
Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 176 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 235
Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
S +G F+AYN+VIQYLAKA+KLE+++CCFKK +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 236 SSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 295
Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
KAFEIYESMEK + LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER RPSF++F+SLV
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355
Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415
Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
PNFGL+TMIIESHAKSGKL++AM++F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
YNSMT+AGLRPGLS+Y +LLTLLA ++LVDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535
Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595
Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
TS+LAHLVRCQDE ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 596 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 655
Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 656 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 715
Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL
Sbjct: 716 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 775
Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
RAPG+ VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 776 RAPGELVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 831
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/828 (78%), Positives = 725/828 (87%), Gaps = 22/828 (2%)
Query: 8 LCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRLDYGETQNFVKDAIFFR 67
+ P++L L +P F F ++ IH+ +F + F+ FS + +N IF
Sbjct: 29 VSPKDLSLLSKSHPMFTSSFQASNIHNPNFINPFL----FSLK-----ARN--PSPIFI- 76
Query: 68 KPNYVRSYCSGK----SGDGEKCNEWTEE-IEYLDESGSVIYTGKGIRSVEPGFDDHVMV 122
N+ R++CSG S ++W +E +EYLDESGSVI+TGKG+RSV+PG DDHVMV
Sbjct: 77 --NFSRAFCSGNHHQNSNRSTSSSDWNQEDVEYLDESGSVIFTGKGVRSVDPGLDDHVMV 134
Query: 123 GGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
GG+KKPFLN SAVAKIVE+VNRW+WGPELETQLDKL FVP M H+ QALK++ D+D SLS
Sbjct: 135 GGLKKPFLNVSAVAKIVEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTDTDASLS 194
Query: 183 LFRWAKRQSWY-VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNR 240
LFRWAKRQ WY + DECY +LFD LN+SRDFD + SLFDEM+ DS NG+S A N+
Sbjct: 195 LFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQ 254
Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
V++ LAKA+KLE+++CCFKKV DS CKIDT +YN L+TLFLNKGLPYKAFE+YESME
Sbjct: 255 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 314
Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
C LDGSTYELMIPSLAKSGRLDAA KLFQEMKE+N RPSF +FASLVDSMGKAGRLDTSM
Sbjct: 315 CLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSM 374
Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
KVYMEMQG G RPSA MYVSLIES+ KAGKL+TALR+WDEM+ AGFRPN+GL+TM++ESH
Sbjct: 375 KVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESH 434
Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
AKSGKL+ AMS+F+DME+AGFLPTPSTYSCLLEMH++SGQVDSAMKLYNSMT+AGLRPGL
Sbjct: 435 AKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGL 494
Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
STYTALLTLLA +KLVDVAAK+LLEMK MG+SVDVSASDVLMVYIKDGSVD ALRWLRFM
Sbjct: 495 STYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYIKDGSVDLALRWLRFM 554
Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
GSSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL+LYTS+LAHLVRCQ+E
Sbjct: 555 GSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEE 614
Query: 601 QNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
QNERHLM ILSATKHKAH F+CGLFTGPEQRKQPVLSFVREFF +DYELEEGAARYFVN
Sbjct: 615 QNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVN 674
Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL+AV+HTL
Sbjct: 675 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAVVHTL 734
Query: 721 HRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKK 780
HRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQML+SVESPFEVSKVVLRAPGDSVMEWFKK
Sbjct: 735 HRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLNSVESPFEVSKVVLRAPGDSVMEWFKK 794
Query: 781 PIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI-GKAM 827
PIVQQFL+NEIPSRADILMHK+N LFP SAPE+RSLSPPKPLI GKAM
Sbjct: 795 PIVQQFLINEIPSRADILMHKLNTLFPSSAPEIRSLSPPKPLISGKAM 842
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata] gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/836 (77%), Positives = 722/836 (86%), Gaps = 22/836 (2%)
Query: 1 MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLD-FNHKFIKNTSFSSRL--DYGET 56
MIR R K+ PRN+ +L++ S+ L N + + SF+ RL +
Sbjct: 1 MIRGRTAKIFPRNVIFTLSR---------SSISEALGRINPRLAGSFSFNIRLLSSFTVR 51
Query: 57 QNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNE---------WTEEIEYLDESGSVIYTGK 107
F D R PN+V +S C+E WTEE+EYLDESGSV+++GK
Sbjct: 52 NGFCPDCSVPRDPNFVGLTTQSRSIVRRFCSEKSGGSESSGWTEEVEYLDESGSVLHSGK 111
Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
GIRSVEPG DDHVMVGG+KKP++NASAVAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 112 GIRSVEPGLDDHVMVGGLKKPYMNASAVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 171
Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 172 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 231
Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
S +G F AYN+VIQYLAKA+KLE+++CCFKK +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 232 SSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 291
Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
KAFEIYESMEK + LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER RPSF++F+SLV
Sbjct: 292 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 351
Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 352 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 411
Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
PNFGL+TMIIESHAKSGKL++AMS+F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 412 PNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471
Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
YNSMT+AGLRPGLS+Y +LLTLLA ++LVDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 472 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 531
Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 532 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 591
Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
TS+LAHLVRCQDE ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 592 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 651
Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 652 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 711
Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQ+LSSVESPFEVSKVVL
Sbjct: 712 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQVLSSVESPFEVSKVVL 771
Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
RAPGD VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 772 RAPGDLVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 827
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1322 bits (3421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/753 (83%), Positives = 691/753 (91%), Gaps = 5/753 (0%)
Query: 72 VRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLN 131
+R YC G EWTEEIEYLDESG VIY GKG+RSVEPG DDHVMVG +KKPF+N
Sbjct: 1 MRCYCHDSGG----AKEWTEEIEYLDESGGVIYKGKGVRSVEPGVDDHVMVGEVKKPFVN 56
Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
A AVAKIVEVV RWKWGPEL+TQLDKLQFVP M HI QALKV+ D D LSLFRWAKRQ+
Sbjct: 57 ALAVAKIVEVVKRWKWGPELDTQLDKLQFVPNMTHIAQALKVVGDVDACLSLFRWAKRQA 116
Query: 192 WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
WYVP D+CYVMLFD LN+ RDF+G+ LFDEMV DS+ +G+SLF+A NRVI+YLAKA+KL
Sbjct: 117 WYVPSDDCYVMLFDGLNQKRDFEGIQLLFDEMVGDSA-DGVSLFAACNRVIRYLAKAEKL 175
Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
E+S+CCFKK+L++ CK+DT++YN L+TLFLNKGLPYKAFE+YESMEK CSLDGSTYELM
Sbjct: 176 EVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELM 235
Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
IP+LAKSGRLDAA KLFQEMK R FRP N+FASLVDSMGKAGRLD++MKVYMEM+G G+
Sbjct: 236 IPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGY 295
Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
+P +YVSLIESY K+GKL+TALRLWDEMR+AGFRPNFGL+T+IIESHAKSGKL+IAMS
Sbjct: 296 KPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMS 355
Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
F DME+AGFLPTPSTY+CLLEMHA+SGQ+D AMKLYNSMT+AGLRPGLSTYT LLTLLA
Sbjct: 356 TFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLA 415
Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
+KLVDVAAKILLEMK MGYSVDV+ASD+LMVYIK+GSVD ALRWLRFMGSSGIRTNNFI
Sbjct: 416 NKKLVDVAAKILLEMKAMGYSVDVTASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFI 475
Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
+RQLFESCMK+ L+ESAKPLLETYV SAAKVDL+LYTS+LAHLVRCQ+E+NERHLM+ILS
Sbjct: 476 IRQLFESCMKSGLFESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILS 535
Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671
ATKHKAH+F+CGLFTGPE R QPVL+FVREFF GIDYELEEGAA+YFVNVLLNYLVLMGQ
Sbjct: 536 ATKHKAHSFMCGLFTGPEHRGQPVLTFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQ 595
Query: 672 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG 731
INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV+HTLHRFRKRMLYYG
Sbjct: 596 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYG 655
Query: 732 VVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEI 791
+VPRRIKLVTG TLKIVIAQMLSSVESPFEVSKVVLRA GDSVMEWFKKPIVQQFLLNEI
Sbjct: 656 IVPRRIKLVTGATLKIVIAQMLSSVESPFEVSKVVLRASGDSVMEWFKKPIVQQFLLNEI 715
Query: 792 PSRADILMHKMNILFPCSAPELRSLSPPKPLIG 824
PSR+DILMHK+NILFP SAPELRSLSPPKPLI
Sbjct: 716 PSRSDILMHKLNILFPSSAPELRSLSPPKPLIA 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cucumis sativus] gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1295 bits (3351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/768 (79%), Positives = 695/768 (90%), Gaps = 3/768 (0%)
Query: 59 FVKDAIFFRKPNYVRSYCSGK-SGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFD 117
F+++ F ++ RSYCSGK SG+G + EWTE+IEYLDESGSVI++GKG+RSVEPG D
Sbjct: 55 FLENPHVFNNRSFTRSYCSGKESGNGGR--EWTEDIEYLDESGSVIFSGKGVRSVEPGVD 112
Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS 177
DHVMVGG+KKPFLNASAVAKIVEVV RWKWGPELE+QL+KLQFVP M HITQ LK+I+D+
Sbjct: 113 DHVMVGGLKKPFLNASAVAKIVEVVRRWKWGPELESQLEKLQFVPNMTHITQVLKIIDDA 172
Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
+ SLSLFRWAKRQSWY P DECY +LFD LN+ RDFD + LFDE+V D S + FSA
Sbjct: 173 EASLSLFRWAKRQSWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSA 232
Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
YNRVIQYLAKA+KLE+S+CCFKK+ DS K+DTQ+YN L+TLFLNKGLPYKAFEIYESM
Sbjct: 233 YNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMA 292
Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
ECSLD ST+ELMIP LAKSGRLDAA+KLFQEMKE+ +RP+ N+++SLVDSMGKAGRLD
Sbjct: 293 GAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLD 352
Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
TSMK+YMEMQ RPSA M+VSLIES+ KAGKLDTAL+LWD+M+ AGF+PNFGL++M++
Sbjct: 353 TSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVV 412
Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
ESHAKSGKLD+AMS+FT+ME+AGFLP PSTY CLLEM A+SG VD+AMKLYNSMT+AGLR
Sbjct: 413 ESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLR 472
Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
GL+TYT+LLTLLA +KL+D+AAK+LLEMK MG+SV VSASDVLMVYIK+GSVD ALRWL
Sbjct: 473 LGLNTYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSVSASDVLMVYIKEGSVDSALRWL 532
Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
+FMGSSGIRTN+FI+RQLFESCMK +YESA PLLETYV SAAKVDL+LYTS+LAHLVRC
Sbjct: 533 QFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPLLETYVNSAAKVDLILYTSILAHLVRC 592
Query: 598 QDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARY 657
Q+EQ ER+LM+ILS TKHKAH+FLCGLFTG EQRKQPVLSFVREFF IDYELEE +A+Y
Sbjct: 593 QEEQKERYLMSILSTTKHKAHSFLCGLFTGTEQRKQPVLSFVREFFQSIDYELEESSAKY 652
Query: 658 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
FVNVLLNYL+LMGQINRARC+WKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV+
Sbjct: 653 FVNVLLNYLILMGQINRARCIWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVV 712
Query: 718 HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEW 777
HTLHRFRKRMLYYG+VPRRIKLVTGPTLK+VIAQMLSSVESPFEVSKVVLRA GDSVMEW
Sbjct: 713 HTLHRFRKRMLYYGIVPRRIKLVTGPTLKLVIAQMLSSVESPFEVSKVVLRATGDSVMEW 772
Query: 778 FKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLIGK 825
FKKPIVQQFLLNEIPSR+DILMHK+N LFP SAPE+RSLSPPKPLI +
Sbjct: 773 FKKPIVQQFLLNEIPSRSDILMHKLNTLFPSSAPEIRSLSPPKPLISR 820
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/784 (77%), Positives = 670/784 (85%), Gaps = 57/784 (7%)
Query: 58 NFVKDAIF---FRKP-----NYVRSYCSGK----SGDGEKCNEWTEE-IEYLDESGSVIY 104
NF+ +F R P N+ R++CSG S ++W +E +EYLDESGSVI+
Sbjct: 15 NFINPFLFSLKARNPSPIFINFSRAFCSGNHHQNSNRSTSSSDWNQEDVEYLDESGSVIF 74
Query: 105 TGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKM 164
TGKG+RSV+PG DDHVMVGG+KKPFLN SAVAKIVE+VNRW+WGPELETQLDKL FVP M
Sbjct: 75 TGKGVRSVDPGLDDHVMVGGLKKPFLNVSAVAKIVEIVNRWRWGPELETQLDKLHFVPNM 134
Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
H+ QALK++ D+D SL+ GD
Sbjct: 135 SHVIQALKIVTDTDASLN------------SGDN-------------------------- 156
Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
NG+S A N+V++ LAKA+KLE+++CCFKKV DS CKIDT +YN L+TLFLNKG
Sbjct: 157 -----NGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKG 211
Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
LPYKAFE+YESME C LDGSTYELMIPSLAKSGRLDAA KLFQEMKE+N RPSF +FA
Sbjct: 212 LPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFA 271
Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
SLVDSMGKAGRLDTSMKVYMEMQG G RPSA MYVSLIES+ KAGKL+TALR+WDEM+ A
Sbjct: 272 SLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKA 331
Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
GFRPN+GL+TM++ESHAKSGKL+ AMS+F+DME+AGFLPTPSTYSCLLEMH++SGQVDSA
Sbjct: 332 GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSA 391
Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
MKLYNSMT+AGLRPGLSTYTALLTLLA +KLVDVAAK+LLEMK MG+SVDVSASDVLMVY
Sbjct: 392 MKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVY 451
Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
IKDGSVD ALRWLRFMGSSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL
Sbjct: 452 IKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDL 511
Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
+LYTS+LAHLVRCQ+EQNERHLM ILSATKHKAH F+CGLFTGPEQRKQPVLSFVREFF
Sbjct: 512 ILYTSILAHLVRCQEEQNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQ 571
Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 704
+DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV
Sbjct: 572 SVDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 631
Query: 705 RNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSK 764
RNLSVGAAL+AV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQML+SVESPFEVSK
Sbjct: 632 RNLSVGAALVAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLNSVESPFEVSK 691
Query: 765 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI- 823
VVLRAPGDSVMEWFKKPIVQQFL+NEIPSRADILMHK+N LFP SAPE+RSLSPPKPLI
Sbjct: 692 VVLRAPGDSVMEWFKKPIVQQFLINEIPSRADILMHKLNTLFPSSAPEIRSLSPPKPLIS 751
Query: 824 GKAM 827
GKA+
Sbjct: 752 GKAI 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/740 (58%), Positives = 572/740 (77%), Gaps = 7/740 (0%)
Query: 88 EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
EWT+ ++YLDE+G V+ + G R PG + ++ G P +A A++ + R +
Sbjct: 34 EWTDTVDYLDETGEVLSSAPGARPAVPGAEPTILSGSSAHPLPRPAAAARLAALALRLRS 93
Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
GP L L L P + A + SD + LSL W++ Q W+VP D+ ++
Sbjct: 94 GPSLSAALSALPSPPDPSLLLLAATSLPASDPTPLLSLVAWSRHQPWFVPSDDLSSLVAA 153
Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
L + +LSLFD+ + + + + N V+ LA LE ++ CFK++ D+
Sbjct: 154 RLQPATHSSDLLSLFDDAL--AHPDPATFPKTLNAVVSALATHGLLEPAFYCFKRLRDAG 211
Query: 266 CK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
+ ++T +YN L+++ L +GL +KAFE+ + M C+LD TYEL +P+LA++GR+DA+
Sbjct: 212 FRGLETPTYNALLSVLLTRGLAFKAFEVLDEMSVSGCALDKGTYELAVPALARAGRIDAS 271
Query: 325 IKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
KLF EM++R+ R S +++ +VD + K+GRLD +M +Y EM GHR S + +++
Sbjct: 272 RKLFDEMRQRDGVGRASPGVYSVMVDVLAKSGRLDAAMGMYREMVAVGHRVSTSVSTAMV 331
Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
E +AGKLD + LW+EMR G RP+FGL+TM++E++A+SG+LD+A +F DME++GF
Sbjct: 332 EGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVAAKLFGDMEKSGFF 391
Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
PTP+TY+CL+EMHAS+GQVD AM++Y+SM +AG RPGLST+TALLT+LA ++L+D+AAK+
Sbjct: 392 PTPATYACLVEMHASAGQVDIAMRMYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKV 451
Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
LLEMK G+ ++V+ASD+LM+YIKDGS + ALRWLRFMGS+GIRTNNFI+RQLFESCMK
Sbjct: 452 LLEMKASGFPIEVTASDLLMIYIKDGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKM 511
Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
LY+SA+PLLETYV +AAKVD++LYTS+LAHLVRCQDE +E +M ILS ++HKAH F+C
Sbjct: 512 GLYDSARPLLETYVGAAAKVDMILYTSILAHLVRCQDEGSEWAIMDILSVSRHKAHDFMC 571
Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682
GLFTGPEQRK+PVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARCVWKVA
Sbjct: 572 GLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKVA 631
Query: 683 YENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
YENKLFPKAIVFDQHIAWSLD+RNLSVGAAL++ +HTLHRFRKRMLYYGVVPRRIKLVTG
Sbjct: 632 YENKLFPKAIVFDQHIAWSLDIRNLSVGAALVSTVHTLHRFRKRMLYYGVVPRRIKLVTG 691
Query: 743 PTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKM 802
PTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS++D+LMHK+
Sbjct: 692 PTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKSDVLMHKL 751
Query: 803 NILFPCSAPELRSLSPPKPL 822
N++FP SAPE+RSL+ P+ L
Sbjct: 752 NVMFPSSAPEVRSLNLPRSL 771
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414585491|tpg|DAA36062.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays] gi|414585492|tpg|DAA36063.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/741 (58%), Positives = 568/741 (76%), Gaps = 9/741 (1%)
Query: 88 EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
EWT+ ++YLDESG+++ + +G R PG D ++ G P +A A++ + R +
Sbjct: 46 EWTDTVDYLDESGALLSSARGARPAVPGADPTILSGASAHPLPRPAAAARLAALALRHRS 105
Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
G L L L P + A + SD +SL WA+ Q W+VP D+ +L
Sbjct: 106 GATLSAALSALPSPPDPALLLLAAASLPASDPVPLISLVAWARLQPWFVPSDDLSSLLAA 165
Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLF-SAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
L + +L+LFD+ + S ++ F +N V+ LA LE ++ CFK++ D
Sbjct: 166 RLPPATHSSELLALFDDTLGLSD---LATFPKTFNAVVSALATHGLLEPAFYCFKRLRDV 222
Query: 265 DCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
+ ++T +YN L++L L +GL +KAFE+ + M C+LD TY+L +P+LA++GR+DA
Sbjct: 223 SFRGLETPAYNALLSLLLTRGLAFKAFEVLDEMATSGCALDEGTYQLAVPALARAGRIDA 282
Query: 324 AIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
A K+F EMK+R R +++ +VD + KAGRLD +M +Y EM GHR S + ++
Sbjct: 283 ARKMFDEMKQREGIGRAPVGVYSVMVDVLAKAGRLDAAMGMYREMVVVGHRVSTAVSTAM 342
Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
+E+ ++GKLD + LW+EMR G RP+FGL+TM++E++A+SG+LD+A +F DME++GF
Sbjct: 343 VEALVRSGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGF 402
Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
PTP+TY+CL+EMHAS+GQVD+AM+LY+SM ++G RPGLST+TALLT+LA + L+D+AAK
Sbjct: 403 FPTPATYACLVEMHASAGQVDAAMRLYHSMANSGTRPGLSTFTALLTMLANKSLLDLAAK 462
Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
+LLEMK G+ ++V+ASD+LM+YIKDGS D ALRWLRFMGS+GIRTNNFI+RQLFESCMK
Sbjct: 463 VLLEMKASGFPIEVTASDLLMIYIKDGSTDLALRWLRFMGSAGIRTNNFIIRQLFESCMK 522
Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
LY+SA+ LLE YV AAKVDL+LYTS+LAHLVRCQDE +ER +M IL +KHKAH F+
Sbjct: 523 TGLYDSARSLLEAYVAGAAKVDLILYTSILAHLVRCQDESSERTIMDILGTSKHKAHDFM 582
Query: 622 CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKV 681
CGLFTGPEQRKQPVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARCVWKV
Sbjct: 583 CGLFTGPEQRKQPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKV 642
Query: 682 AYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT 741
AYENKLF KAIVFDQHIAWSLDVR+LSVGAAL+A +HTLHRFRKRMLYYGVVPRRIKLVT
Sbjct: 643 AYENKLFAKAIVFDQHIAWSLDVRSLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVT 702
Query: 742 GPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHK 801
GPTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS+AD+LMH+
Sbjct: 703 GPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKADVLMHR 762
Query: 802 MNILFPCSAPELRSLSPPKPL 822
+N++FP SAPE+RSLS P+ L
Sbjct: 763 LNVMFPSSAPEVRSLSIPRSL 783
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | ||||||
| TAIR|locus:2206385 | 836 | EMB2217 "embryo defective 2217 | 0.989 | 0.978 | 0.754 | 0.0 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.524 | 0.507 | 0.282 | 1.3e-40 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.494 | 0.499 | 0.259 | 1.8e-33 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.431 | 0.321 | 0.271 | 1.7e-32 | |
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.447 | 0.576 | 0.244 | 3.5e-31 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.558 | 0.530 | 0.234 | 4.3e-31 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.429 | 0.500 | 0.259 | 5.1e-29 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.506 | 0.691 | 0.247 | 6e-29 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.505 | 0.559 | 0.252 | 1.2e-27 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.483 | 0.464 | 0.234 | 4.5e-26 |
| TAIR|locus:2206385 EMB2217 "embryo defective 2217" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3232 (1142.8 bits), Expect = 0., P = 0.
Identities = 631/836 (75%), Positives = 707/836 (84%)
Query: 1 MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRL-DYGETQN 58
MIR R K+ PRN+ +L+++ P I N K + SF+ RL Y +N
Sbjct: 1 MIRGRTAKVIPRNVIFTLSRSSISESPL----ISPSRINPKLAGSFSFNIRLLSYFTVRN 56
Query: 59 -FVKDAIFFRKPNYV----------RSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGK 107
F D R PN+V R +CS K G E WTEE+EYLDESGSV+++GK
Sbjct: 57 GFCPDCSVPRDPNFVGLTTQCRSIVRRFCSEKIGSSESSG-WTEEVEYLDESGSVLHSGK 115
Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
GIRSVEPG DDHVMVGG+KKP++NAS+VAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 116 GIRSVEPGLDDHVMVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 175
Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 176 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 235
Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
S +G F+AYN+VIQYLAKA+KLE+++CCFKK +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 236 SSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 295
Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
KAFEIYESMEK + LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER RPSF++F+SLV
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355
Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415
Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
PNFGL+TMIIESHAKSGKL++AM++F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 468 YNSMTSAGLRPGLSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
YNSMT+AGLRPGLS+Y VDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535
Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595
Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
TS+LAHLVRCQDE ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 596 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 655
Query: 648 YELEEGAARYFXXXXXXXXXXMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
YELEEGAARYF MGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 656 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 715
Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL
Sbjct: 716 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 775
Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
RAPG+ VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 776 RAPGELVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 831
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 125/443 (28%), Positives = 211/443 (47%)
Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
DG TY M+ +L ++ + KL EM +P+ + L+ S G+A L +M V+
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417
Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
+MQ G P Y +LI+ +AKAG LD A+ ++ M+ AG P+ +++II K+
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
G L A +F +M G P T++ ++ +HA + ++A+KLY M +AG +P TY
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 484 XXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
++ A + EM+ + D +L+ ++ K G+VD A +W + M
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQ 597
Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
+G+R N L + ++ A LL++ + L YT +L+ + +
Sbjct: 598 AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 657
Query: 603 ERHLMAILSATKHKAHAFLCGLF-TGPEQRK--QPVLSFVREFFHGIDYELEEGAARYFX 659
+++ + H AH FL + GP+ +K V +F+ +F H D E + G
Sbjct: 658 MGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFL-DFMHSEDRESKRG----LM 712
Query: 660 XXXXXXXXXMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
G A VW+VA ++P A+ + W +++ +S G A+IA+ T
Sbjct: 713 DAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRT 772
Query: 720 LHRFRKRMLYYGVVPRRIKLVTG 742
L FRK+ML G P RI +VTG
Sbjct: 773 LAWFRKQMLVSGDCPSRIDIVTG 795
|
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| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 109/420 (25%), Positives = 199/420 (47%)
Query: 178 DTSLSLFRWAKRQSWY--VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
D +L F W +Q Y + + ++ +L + +G +S M + ++G SL
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGK----EGRVSSAANMFNGLQEDGFSLD 207
Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIY 293
+Y +I A + + + FKK+ + CK +YNV++ +F G P+ K +
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLV 267
Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRL-DAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
E M+ + D TY +I + K G L A ++F+EMK F + +L+D GK
Sbjct: 268 EKMKSDGIAPDAYTYNTLI-TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGK 326
Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
+ R +MKV EM G PS Y SLI +YA+ G LD A+ L ++M G +P+
Sbjct: 327 SHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386
Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
+T ++ ++GK++ AMSIF +M AG P T++ ++M+ + G+ MK+++ +
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446
Query: 473 SAGLRPGLSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
GL P + T+ + + EMK G+ + + L+ Y + GS +
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 506
Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
A+ R M +G+ + + + + ++E ++ +L + K + + Y S+L
Sbjct: 507 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 1.7e-32, P = 1.7e-32
Identities = 99/364 (27%), Positives = 176/364 (48%)
Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMS 254
GD V + + + G +LF++ D G+ YN +I L +AD +E++
Sbjct: 748 GDSILVPIIRYSCKHNNVSGARTLFEKFTKDL---GVQPKLPTYNLLIGGLLEADMIEIA 804
Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
F +V + C D +YN L+ + G + FE+Y+ M EC + T+ ++I
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864
Query: 315 LAKSGRLDAAIKLFQE-MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
L K+G +D A+ L+ + M +R+F P+ + L+D + K+GRL + +++ M G RP
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP 924
Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
+ +Y LI + KAG+ D A L+ M G RP+ ++++++ G++D + F
Sbjct: 925 NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYF 984
Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLSTYXXXXXXXXX 492
+++ +G P Y+ ++ S +++ A+ L+N M TS G+ P L TY
Sbjct: 985 KELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGI 1044
Query: 493 XXXVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
V+ A KI E++ G +V + L+ Y G +HA + M + G N
Sbjct: 1045 AGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1104
Query: 552 VRQL 555
QL
Sbjct: 1105 YEQL 1108
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| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 3.5e-31, P = 3.5e-31
Identities = 93/380 (24%), Positives = 183/380 (48%)
Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYV 194
+ + +V +KWGP+ E L+ L+ K+ H + L++ + + + F+WA ++ +
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKL--KVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQ 123
Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEM 253
Y+ L L E+R + M E+V ++ +S+ A + +++ L +A +
Sbjct: 124 HDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY---VSVSPAVLSELVKALGRAKMVSK 180
Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMI 312
+ F + CK + +YN ++ + + +G K E+Y M +G+C D TY +I
Sbjct: 181 ALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALI 240
Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
S K GR D+AI+LF EMK+ +P+ I+ +L+ K G+++ ++ ++ EM+ G
Sbjct: 241 SSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
P+ Y LI+ KAG++D A + +M G P+ ++ K G+++ ++
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360
Query: 433 FTDMERAGFLPTPSTYSCLLE-MHASSGQVDSAMKLYNSMTSAGLRPGLSTYXXXXXXXX 491
F++M PT +Y+ +++ + S V ++ M + + P TY
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYC 420
Query: 492 XXXXVDVAAKILLEMKTMGY 511
V+ A +L EM G+
Sbjct: 421 KTNRVEKALLLLEEMDEKGF 440
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| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 4.3e-31, P = 4.3e-31
Identities = 110/470 (23%), Positives = 202/470 (42%)
Query: 126 KKPFL---NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
+KP+ N V I V+ WGP E L L F P+ + L+ + D + ++
Sbjct: 24 EKPYTFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIE 83
Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
FRW +R++ E Y L V+ R+FD + + EM + G S+ + V+
Sbjct: 84 YFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEM--SVAGFGPSVNTCIEMVL 141
Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
+ KA+KL Y + + + +Y L+ F +++ M++
Sbjct: 142 GCV-KANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYE 200
Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
+ +I AK GR+D+A+ L EMK + ++ +DS GK G++D + K
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260
Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
+ E++ G +P Y S+I KA +LD A+ +++ + P + +I +
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320
Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
+GK D A S+ G +P+ Y+C+L G+VD A+K++ M P LST
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLST 379
Query: 483 YXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMG 541
Y +D A ++ M+ G +V ++++ + K +D A M
Sbjct: 380 YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMD 439
Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
+ L + K + A + E ++S + + ++YTS++
Sbjct: 440 YKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 5.1e-29, P = 5.1e-29
Identities = 93/358 (25%), Positives = 172/358 (48%)
Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYESMEKG 299
+I LA + + + F+++ S K T++YN L+ ++ G P K E + MEK
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTG-PLKDAESMVSEMEKR 368
Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
S D TY L+I + +GR ++A + +EM+ + +P+ +F+ L+ G +
Sbjct: 369 GVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKT 428
Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
+V EM+ G +P Y +I+++ K LD A+ +D M G P+ + +I+
Sbjct: 429 FQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC 488
Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
H K G+ +A +F MER G LP +TY+ ++ + + D +L M S G+ P
Sbjct: 489 HCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPN 548
Query: 480 LSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
+ T+ + A + L EMK++G + + L+ Y + G + A+ R
Sbjct: 549 VVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFR 608
Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
M S G++ + + L + ++ A +L+ E+ K D+V YT+++ L+R
Sbjct: 609 VMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIR 666
|
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| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 107/433 (24%), Positives = 198/433 (45%)
Query: 171 LKVINDSDTSLSLFRWAKRQSWY---VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
L N+S L F KR +Y + C ++ +L E+R D + ++ EM+
Sbjct: 161 LAYANNSRFELG-FEAFKRSGYYGYKLSALSCKPLMIALLKENRSAD-VEYVYKEMIRRK 218
Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN---KG 284
+ + F N VI L K K+ + + + C + SYN L+ + G
Sbjct: 219 IQPNVFTF---NVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275
Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
YKA + + M + + S + +T+ ++I K L ++K+F+EM +++ +P+ +
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335
Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
SL++ + G++ ++ + +M G +P+ Y +LI + K L AL ++ ++
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQ 395
Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
G P ++ M+I+++ K GK+D ++ +MER G +P TY+CL+ +G +++A
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455
Query: 465 MKLYNSMTSAGLRPGLSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSASDVLMV- 523
KL++ +TS GL P L T+ AA +L EM MG +++M
Sbjct: 456 KKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKG 514
Query: 524 YIKDGSVDHALRWLRFMGSSG-IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
Y K+G++ A M +R N L + + E A LL +E
Sbjct: 515 YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVP 574
Query: 583 DLVLYTSVLAHLV 595
+ + Y V +V
Sbjct: 575 NRITYEIVKEEMV 587
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 109/431 (25%), Positives = 193/431 (44%)
Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDV-LNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
D +LS+ A+ ++PG Y + D + R+ ++F EM+ S+ ++F+
Sbjct: 151 DKALSIVHLAQAHG-FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE--SQVSPNVFT 207
Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
YN +I+ A ++++ F K+ C + +YN L+ + F++ SM
Sbjct: 208 -YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 297 E-KG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
KG E +L +Y ++I L + GR+ + EM R + + +L+ K G
Sbjct: 267 ALKGLEPNL--ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324
Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
++ ++ EM G PS Y SLI S KAG ++ A+ D+MR+ G PN +T
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
+++ ++ G ++ A + +M GF P+ TY+ L+ H +G+++ A+ + M
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 475 GLRPGLSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
GL P + +Y VD A ++ EM G D ++ S ++ + + A
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 534 LRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
M G+ + F L + CM+ L E A L VE D+V Y SVL
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDL-EKALQLHNEMVEKGVLPDVVTY-SVLI 562
Query: 593 HLVRCQDEQNE 603
+ + Q E
Sbjct: 563 NGLNKQSRTRE 573
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| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 95/405 (23%), Positives = 171/405 (42%)
Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
D SL LF++ +RQ W P + Y ++ +L D L +FDEM S+F
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR--SVF 177
Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYE 294
S Y +I + + E S ++ + +YN ++ GL ++ ++
Sbjct: 178 S-YTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFA 236
Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
M D TY ++ + A G D A +F+ M + P ++ LV++ GK
Sbjct: 237 EMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLR 296
Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
RL+ + EM G P Y L+E+YAK+G + A+ ++ +M+ AG PN ++
Sbjct: 297 RLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS 356
Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
+++ +SG+ D +F +M+ + P +TY+ L+E+ G + L++ M
Sbjct: 357 VLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEE 416
Query: 475 GLRPGLSTYXXXXXXXXXXXXVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
+ P + TY + A KIL M A + V+ + + + A
Sbjct: 417 NIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA 476
Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
L M G + L S + L + ++ +L V+S
Sbjct: 477 LVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SAK0 | PP132_ARATH | No assigned EC number | 0.7751 | 0.9891 | 0.9784 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0154007101 | hypothetical protein (785 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 827 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 91/411 (22%), Positives = 180/411 (43%), Gaps = 45/411 (10%)
Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
FR+AK P + ML V S+D DG L RV++
Sbjct: 426 FRFAKLIR--NPTLSTFNMLMSVCASSQDIDGAL----------------------RVLR 461
Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
+ +A L +DCK+ Y L++ G FE++ M
Sbjct: 462 LVQEAG------------LKADCKL----YTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505
Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
+ T+ +I A++G++ A + M+ +N +P +F +L+ + G++G +D + V
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 364 MEMQGCGHRPSAPMYVS---LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
EM+ H P P +++ L+++ A AG++D A ++ + + ++T+ + S
Sbjct: 566 AEMKAETH-PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
++ G D A+SI+ DM++ G P +S L+++ +G +D A ++ G++ G
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRF 539
+Y++L+ + K A ++ ++K++ VS + L+ + +G+ + AL L
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
M G+ N L + + + LL E K +LV+ +
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 3e-21
Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 2/258 (0%)
Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
D + LM N G +A E+Y+ + + Y + + S ++ G D A+ ++
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
+MK++ +P F++LVD G AG LD + ++ + + G + Y SL+ + + A
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
AL L+++++ RP +I + + +L A+ + ++M+R G P TY
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA-KILLEMK 507
S LL D + L + G++P L + L +R A + ++
Sbjct: 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817
Query: 508 TMGYSVDVS-ASDVLMVY 524
+ ++ S LMVY
Sbjct: 818 SGRPQIENKWTSWALMVY 835
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-14
Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 6/236 (2%)
Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
L + GR+ I L ++M++R I+ + KA + ++K P
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA---KFFKACKKQRAVKEAFRFAKLIRNP 435
Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
+ + L+ A + +D ALR+ ++ AG + + L+T +I + AKSGK+D +F
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
+M AG T+ L++ A +GQV A Y M S ++P + AL++ +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 494 KLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
VD A +L EMK + +D ++ ++ G VD A + + I+
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-14
Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 28/315 (8%)
Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
+I +K +E + C F D + T ++N ++ + G +A +Y M
Sbjct: 265 LIDMYSKCGDIEDARCVF----DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
S+D T+ +MI ++ L+ A + + F +LVD K GR++ +
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
V+ M R + + +LI Y G+ A+ +++ M G PN F ++ +
Sbjct: 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 421 AKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
SG + IF M E P Y+C++E+ G +D A Y + A +P
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPT 493
Query: 480 LSTYTALLTLLAKR-----KLVDVAAKILLEM---KTMGYSVDVSASDVLMVYIKDGSVD 531
++ + ALLT A R +L +AA+ L M K Y V +L +Y G
Sbjct: 494 VNMWAALLT--ACRIHKNLELGRLAAEKLYGMGPEKLNNYVV------LLNLYNSSGRQA 545
Query: 532 HALRWLRFMGSSGIR 546
A + + + G+
Sbjct: 546 EAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 45/251 (17%), Positives = 102/251 (40%), Gaps = 26/251 (10%)
Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
A IY+ M+K D + ++ +G LD A ++ Q+ +++ + ++SL+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
+ A ++++Y +++ RP+ +LI + + +L AL + EM+ G P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM-------HASSGQ- 460
N +++++ + + D+ + + + + G P C+ + + G+
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812
Query: 461 ---------------VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
A+ +Y SAG P + + +L L + D + L
Sbjct: 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL--QLPHDATLRNRL- 869
Query: 506 MKTMGYSVDVS 516
++ +G S D
Sbjct: 870 IENLGISADSQ 880
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 41/292 (14%)
Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
S N +IQ + F ++ + K D S+ +++ + GLP KA E Y
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRM---ETK-DAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA-SLVDSMGKAG 354
ME+ S D T ++ + A G LD +KL E+ ER S+ + A +L++ K
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKL-HELAERKGLISYVVVANALIEMYSKCK 438
Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
+D +++V+ + + S+I + AL + +M + +PN
Sbjct: 439 CIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLI 493
Query: 415 MIIESHAKSGKLDIAMSIFTDMERAG-----FLPTP------------------------ 445
+ + A+ G L I + R G FLP
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553
Query: 446 -STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
+++ LL + + G+ A++L+N M +G+ P T+ +LL ++ +V
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 12/248 (4%)
Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
V+ ++D N L+T+++ G A +++ M + +C ++ MI ++G
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGE 268
Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG--RLDTSMKVYMEMQGCGHRPSAPMY 378
++LF M+E + P S++ + G RL M Y+ G S +
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS--VC 326
Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
SLI+ Y G A +++ M + +T +I + K+G D A+ + ME+
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
P T + +L A G +D +KL+ GL + AL+ + +K K +D
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 499 AAKILLEM 506
A ++ +
Sbjct: 443 ALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-08
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 18/88 (20%)
Query: 700 WSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG---------PTLKIVIA 750
WSLD+ L+V AL A+ L+ R + L +++ ++TG +K +
Sbjct: 2 WSLDLHGLTVEEALTALDKFLNNARLKGLE-----QKLVIITGKGKHSLGGKSGVKPALK 56
Query: 751 QMLSSVESPFEVSKVVLRAPGDSVMEWF 778
+ L F G V++
Sbjct: 57 EHLRVESFRFAEEG----NSGVLVVKLK 80
|
Length = 80 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
P TY+ L++ + G+V+ A+KL+N M G++P + TY+ L+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 57/310 (18%), Positives = 123/310 (39%), Gaps = 57/310 (18%)
Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
S+ ++ ++ G +AF ++ M + + T+ +M+ + A G A +L +
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250
Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
+ + +L+D K G ++ + V+ M + + S++ YA G
Sbjct: 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306
Query: 392 DTALRLWDEMRIAGFR-PNFGLFTMI------------IESHA----------------- 421
+ AL L+ EMR +G F MI ++HA
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 422 -----KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
K G+++ A ++F M R + +++ L+ + + G+ A++++ M + G+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEM--------KTMGYSVDVSASDVLMVYIKDG 528
P T+ A+L+ L + +I M + M Y+ ++ + ++G
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC------MIELLGREG 476
Query: 529 SVDHALRWLR 538
+D A +R
Sbjct: 477 LLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 16/285 (5%)
Query: 312 IPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
I L GR A++LF+ ++ F + + +LV++ + VY ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT--MIIESHAKSGKLDI 428
P M ++ + K G L A RL+DEM P L + II +G
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
A ++F +M G P T+ +L A G + +L+ + G+ AL+
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 489 LLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
+ +K ++ A + M KT V+ + +L Y G + AL M SG+
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTT-----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
+ F + + AL E AK + + +D+V T+++
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
+ D S+N+L+T ++ G A E++ M + + D T+ ++ + ++SG + +
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 326 KLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-------------QGCG- 370
+ F M+E+ + P+ +A +VD +G+AG+L + +M C
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669
Query: 371 HR-----------------PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
HR S Y+ L YA AGK D R+ MR G
Sbjct: 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
+ +I+ + K GK++ A+ +F +M++ G P TYS L+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 5e-06
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
D +YN L+ + KG +A +++ M+K + TY ++I L K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 50/278 (17%), Positives = 111/278 (39%), Gaps = 15/278 (5%)
Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
+ +++ +I L +G A LF+EM E F ++ + G S +
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG----SARAG 243
Query: 364 MEMQGCGHRPSA--PMYVS--LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
++ C + +VS LI+ Y+K G ++ A ++D M + ++
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299
Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
+A G + A+ ++ +M +G T+S ++ + + ++ A + + + G
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
+ TAL+ L +K ++ A + M +S + ++ Y G A+
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNL---ISWNALIAGYGNHGRGTKAVEMFER 416
Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
M + G+ N+ + +C + L E + ++ E
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
P Y +LI+ Y K GK++ AL+L++EM+ G +PN ++++I+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---SFNIF 343
TY +I K G+++ A+KLF EMK+R +P +++I
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
Y +LI+ KAG+++ AL L+ EM+ G P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
TY +I L K+GR++ A++LF+EMKER P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 44/353 (12%)
Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
N ++++F+ G A+ ++ M + D ++ +++ AK+G D A+ L+ M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
RP F ++ + G L +V+ + G + +LI Y K G + +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 394 ALRLWDEM----------RIAGF---------------------RPNFGLFTMIIESHAK 422
A ++D M I+G+ P+ T +I +
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
G + + + + GF S + L++M+ S G A K+++ M +
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356
Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMG 541
+TA+++ K L D A + M+ S D ++ + VL G +D ++
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
G+ + + L E K + A LE + K D++ +TS++A L
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKA---LEVFHNIPEK-DVISWTSIIAGL 465
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
G + +P Y+ + G++ + L ++M GL M HAK K
Sbjct: 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR------GLLDMDKIYHAKFFKAC 416
Query: 428 IAMSIFTDMERAGFL---PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
+ R L PT ST++ L+ + ASS +D A+++ + AGL+ YT
Sbjct: 417 KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476
Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
L++ AK VD ++ EM G +V
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 70/369 (18%), Positives = 126/369 (34%), Gaps = 110/369 (29%)
Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS 177
DH+ VG + K NA V + EV +M+H
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVY--------------------QMIH----------- 606
Query: 178 DTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
+ + G E Y + + ++ D+D LS++D+M K FS
Sbjct: 607 -------------EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
A V + DK AFEI +
Sbjct: 654 ALVDVAGHAGDLDK--------------------------------------AFEILQDA 675
Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
K L +Y ++ + + + A++L++++K RP+ + +L+ ++ + +L
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
+++V EM+ G P+ Y L+ + + D L L + + G +PN + I
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 417 I-------ESHA---------KSGKLDI-------AMSIFTDMERAGFLPTPSTYS---- 449
E SG+ I A+ ++ + AG LPT S
Sbjct: 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855
Query: 450 CLLEMHASS 458
CL H ++
Sbjct: 856 CLQLPHDAT 864
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
G +P Y +LI+ +AG++D A+ L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 5e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
D TY +I L ++GR+D A++L EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
TY+ LL A +G D A+ + M ++GL+P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
Y SLI Y KAGKL+ AL L+ EM+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
TY +I K+G+L+ A++LF+EMKE+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
YN +I K K+E + F ++ K + +Y++L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
++N L+D K G+++ ++K++ EM+ G +P+ Y LI+ K
Sbjct: 5 TYNT---LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
TY+ L++ +G+V+ A++L+ M G+ P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.39 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.08 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.76 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.48 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.18 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.95 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.9 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.8 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.69 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.57 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.27 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.24 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.11 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.07 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.06 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.04 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.01 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.71 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.51 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.22 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.74 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.97 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.09 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.76 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.59 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.56 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.14 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.79 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.1 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.49 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.12 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.97 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.88 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.61 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.0 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 85.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.69 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.36 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.82 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.81 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.78 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.24 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.24 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 80.12 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-72 Score=666.36 Aligned_cols=600 Identities=17% Similarity=0.261 Sum_probs=536.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
.+...+.+.|+.++|+++|++|.+.+-..++...++.++..|.+.|.+++|..+|+.|. .|+..+|+.++.+|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 34455556699999999999999987667888889999999999999999999999885 47899999999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG--CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 67899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 483 (827)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 562 (827)
+++|.+|++.|++++|.++|++|.+.|+.|+. +|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC-------------------CHHHHHHHHHHHhhccCchhH
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR----CQ-------------------DEQNERHLMAILSATKHKAHA 619 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g-------------------~~~~a~~l~~~l~~~~~~~~~ 619 (827)
|++++|.++|++|.+.|+.||..+|++|+..|.+ ++ ..+.|..+|++|...+..++.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9999999999999999999999999999976432 22 236788899999998876664
Q ss_pred HH-hhhccCCccccchhHHHHHHHhhccccccccC-cchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 620 FL-CGLFTGPEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 620 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
.. ..++... ...+....+.++++.+. ..+. ....+||+||+++++. .++|..+++.|.+.|+.|+.. +++.
T Consensus 848 ~T~~~vL~cl--~~~~~~~~~~~m~~~m~--~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~-~~~~ 920 (1060)
T PLN03218 848 EVLSQVLGCL--QLPHDATLRNRLIENLG--ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS-FKKS 920 (1060)
T ss_pred HHHHHHHHHh--cccccHHHHHHHHHHhc--cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc-cccC
Confidence 32 2222111 22223445566665542 2222 2356799999998432 468999999999999999975 3333
Q ss_pred hhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceee--------eecchh---------HHHHHHHHHhccCCCc
Q 003353 698 IAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIK--------LVTGPT---------LKIVIAQMLSSVESPF 760 (827)
Q Consensus 698 i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~--------~~tg~~---------~~~~~~~~l~~~~~pf 760 (827)
.|.+|+|.|+.|+|.+++..|+..+.++.......|.... +-|+.+ +..+|+.+|.+++.||
T Consensus 921 -~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 -PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred -ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 6999999999999999999999999877655446888776 344333 6788999999999999
Q ss_pred eec--cceEEecchHHHHhhhc
Q 003353 761 EVS--KVVLRAPGDSVMEWFKK 780 (827)
Q Consensus 761 ~~~--~~~~~~~g~~~~~w~~~ 780 (827)
..+ +..+...|.+++.||+-
T Consensus 1000 ~~~~~~g~~~~~~~~~~~wl~~ 1021 (1060)
T PLN03218 1000 QGSESHGKLRINGLSLRRWFQP 1021 (1060)
T ss_pred CCCCCCCeEEeccHHHHHHhcc
Confidence 984 45999999999999987
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=662.24 Aligned_cols=657 Identities=15% Similarity=0.178 Sum_probs=520.8
Q ss_pred CCCcchhhHHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCC
Q 003353 83 GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVP 162 (827)
Q Consensus 83 ~~~~~~w~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p 162 (827)
+++...++.++..+...|... ++...|+.+...+..++.. ....+.+.|...+....+..++..+.+.+..+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~-------~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLE-------QALKLLESMQELRVPVDED-AYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHH-------HHHHHHHHHHhcCCCCChh-HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC
Confidence 445566889999999999988 8888887776654322222 22233333333223333444555555555555
Q ss_pred CHHHH---HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------
Q 003353 163 KMVHI---TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN--------- 230 (827)
Q Consensus 163 ~~~~~---~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~--------- 230 (827)
+.... ...+.+.|+.+.|.++|+.+.. ||..+|+.+|.+|++.|++++|+++|++|...|..+
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 54332 3333445555555555554432 445555555555555555555555555555544300
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 231 -----------------------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 231 -----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
..++..++|.|+.+|+++|++++|.++|++|.+ ||.++||++|.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 145666778888999999999999999999975 78899999999999999999
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 003353 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447 (827)
Q Consensus 368 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 447 (827)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 351 ----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 ----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred ----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIK 526 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~ 526 (827)
||+||++|++.|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|.++|++|.. +..|+. ++..++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999864 6888999999999999999999999999986 477774 88899999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
.|.++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+++ .||.++|++||.+|++.|+.++|..+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 67999999999999999999999999
Q ss_pred HHHHhhccCchhHHH-hhhccCCccccchhHHHHHHHhhccc--cccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 003353 607 MAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGID--YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683 (827)
Q Consensus 607 ~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~ 683 (827)
|++|...+..++... ..++.+.. .....+++.++|+.|. ++..|+.. +|++|+++|++.|++++|.+++++|
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~--~~g~v~ea~~~f~~M~~~~gi~P~~~--~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACS--RSGMVTQGLEYFHSMEEKYSITPNLK--HYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHh--hcChHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 999988776555432 12221111 1234566777787774 45555544 5679999999999999999999887
Q ss_pred HCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceeeeecchhHHHHHHHHHhccCCCceec
Q 003353 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVS 763 (827)
Q Consensus 684 ~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~~~tg~~~~~~~~~~l~~~~~pf~~~ 763 (827)
...||..+|++++..|...++...| ....+++++ ..|+. .+.+++++|+|...|.|.++.
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~----------e~~a~~l~~--l~p~~------~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELG----------ELAAQHIFE--LDPNS------VGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHH----------HHHHHHHHh--hCCCC------cchHHHHHHHHHHCCChHHHH
Confidence 4679999999999754433333322 222234444 57876 445999999999999999998
Q ss_pred cc--------eEEecchHHHHhhhchhhHHHHhhc--CCchhHH
Q 003353 764 KV--------VLRAPGDSVMEWFKKPIVQQFLLNE--IPSRADI 797 (827)
Q Consensus 764 ~~--------~~~~~g~~~~~w~~~~~~~~~~~~~--~~~~~~~ 797 (827)
++ ..+.||+||+++.++ +|.|...| +|...+|
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~--~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGK--VHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCE--EEEEecCCCCCcchHHH
Confidence 87 568999999999999 99999998 6766555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=593.69 Aligned_cols=524 Identities=17% Similarity=0.211 Sum_probs=477.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
.++...|..++..|++.|++++|+++|++|.+.+. .+++...++.++..|.+.|.+++|..+|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 46778899999999999999999999999999885 356788889999999999999999999999986 899999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
|.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI--AGFRPNFGLFTMIIESHAKSGKLDIAMS 431 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~li~~~~~~g~~~~A~~ 431 (827)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
+|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590 (827)
Q Consensus 512 ~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 590 (827)
.|+. +|+.+|.+|+++|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||++|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9995 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC----------------------ccccchhHHHHHHHhhccc-
Q 003353 591 LAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP----------------------EQRKQPVLSFVREFFHGID- 647 (827)
Q Consensus 591 l~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~- 647 (827)
+.+|.+.|+.++|..+++.|...+..++..++..+.+. ......+...+..+|+.|.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999988877665443222111 0011223345666666653
Q ss_pred cccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 003353 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRM 727 (827)
Q Consensus 648 ~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m 727 (827)
.+..|+ ..+|++++..+++.|..+.+..+++.+...+..|+..+|+++|+.++. ...++..++++|
T Consensus 841 ~Gi~Pd--~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~------------~~~~A~~l~~em 906 (1060)
T PLN03218 841 AGTLPT--MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE------------YDPRAFSLLEEA 906 (1060)
T ss_pred CCCCCC--HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc------------ChHHHHHHHHHH
Confidence 344444 456789999999999999999999888777778899999999974321 123577888999
Q ss_pred HhCCCCCcee
Q 003353 728 LYYGVVPRRI 737 (827)
Q Consensus 728 ~~~g~~P~~~ 737 (827)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999999985
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=603.22 Aligned_cols=659 Identities=17% Similarity=0.162 Sum_probs=541.3
Q ss_pred CCCcchhhHHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCC
Q 003353 83 GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVP 162 (827)
Q Consensus 83 ~~~~~~w~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p 162 (827)
.|+...|+.++..+.+.|.+. +|+..|+++...+-.|+.. +...+.+.|........+..++..+.+.|+.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~-------~A~~~f~~M~~~g~~Pd~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFD-------EALCLYHRMLWAGVRPDVY-TFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHH-------HHHHHHHHHHHcCCCCChh-HHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 467888999999999999998 9999999888765433333 55556666665556666778999999999999
Q ss_pred CHHHH---HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHH
Q 003353 163 KMVHI---TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239 (827)
Q Consensus 163 ~~~~~---~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~ 239 (827)
+.... +..+.+.|+.+.|.++|+.+.. ||..+|+++|.+|++.|++++|+++|++|.+.+. .||..+|+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~---~Pd~~ty~ 292 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSV---DPDLMTIT 292 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCChhHHH
Confidence 87664 5556678999999999998753 6788999999999999999999999999999997 99999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.++.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999964 78999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399 (827)
Q Consensus 320 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 399 (827)
++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 400 ~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+|.+ +|..+|+++|.+|++.|+.++|.++|++|.+ ++.||..||++++.+|++.|..+++.+++..|.+.|+.+|
T Consensus 449 ~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 449 NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 9974 6889999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003353 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558 (827)
Q Consensus 480 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 558 (827)
..++++||.+|++.|++++|.++|+++ .++ .+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999987 345 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC-ccccchhH
Q 003353 559 CMKNALYESAKPLLETYV-ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP-EQRKQPVL 636 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~ 636 (827)
|++.|++++|.++|++|. +.|+.||..+|++++++|.+.|+.++|.++++.|. ..++...+ ..++.+. ..+..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~-~aLl~ac~~~~~~e-- 674 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVW-GALLNACRIHRHVE-- 674 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHHcCChH--
Confidence 999999999999999999 68999999999999999999999999999999985 23332221 1111111 111111
Q ss_pred HHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHH----
Q 003353 637 SFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAA---- 712 (827)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a---- 712 (827)
.++...+.+- +++|+. ...|..|.++|.+.|++++|.++++.|.++|+.++....-. .....+|.+..|.-
T Consensus 675 -~~e~~a~~l~-~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i--e~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 675 -LGELAAQHIF-ELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV--EVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred -HHHHHHHHHH-hhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE--EECCEEEEEecCCCCCcc
Confidence 2222222211 234432 23466899999999999999999999999999876643100 00112222222211
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeee-----------cchhHHHHHHHHH--hccCCCceeccceEEec-chHHHHhh
Q 003353 713 LIAVMHTLHRFRKRMLYYGVVPRRIKLV-----------TGPTLKIVIAQML--SSVESPFEVSKVVLRAP-GDSVMEWF 778 (827)
Q Consensus 713 ~~~~~~~~~~~~~~m~~~g~~P~~~~~~-----------tg~~~~~~~~~~l--~~~~~pf~~~~~~~~~~-g~~~~~w~ 778 (827)
.......+.++.++|...|..||.-... .+-.-+.+|+--| ..-|+|.+|.|-..++. =|+++...
T Consensus 750 ~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~ 829 (857)
T PLN03077 750 IKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829 (857)
T ss_pred hHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHH
Confidence 1123456778889999999999854321 1112233444333 44667888877644443 23444444
Q ss_pred hc
Q 003353 779 KK 780 (827)
Q Consensus 779 ~~ 780 (827)
-+
T Consensus 830 s~ 831 (857)
T PLN03077 830 SK 831 (857)
T ss_pred HH
Confidence 33
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=570.81 Aligned_cols=557 Identities=17% Similarity=0.188 Sum_probs=485.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...+..+...+++++|+++|+++....++.|+..+|+.++.+|++.++++.|.+++..|.+.|. .++..+||.++.+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---~~~~~~~n~Li~~ 167 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---EPDQYMMNRVLLM 167 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CcchHHHHHHHHH
Confidence 3456667788999999999999998776789999999999999999999999999999999997 8999999999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
|+++|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
.+++..+.+.|+.+|..+|++||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|+++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999997 679999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003353 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484 (827)
Q Consensus 405 g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 484 (827)
|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 48999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHc
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGS-SGIRTNNFIVRQLFESCMKN 562 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 562 (827)
++|.+|++.|+.++|.++|++|.+.|+.|+. +|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 9999999999999999999999999999995 899999999999999999999999986 69999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHH
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREF 642 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 642 (827)
|++++|.+++++| +.+||..+|++|+.+|...|+.+.+..+++.+....
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~---------------------------- 524 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG---------------------------- 524 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC----------------------------
Confidence 9999999999876 689999999999999999999999988776653211
Q ss_pred hhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCceehhhhhhhhcccCccchHHH----HHHHH
Q 003353 643 FHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF-PKAIVFDQHIAWSLDVRNLSVGAA----LIAVM 717 (827)
Q Consensus 643 ~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~-p~~~~~~~~i~w~~~~~~~~~g~a----~~~~~ 717 (827)
|. ....|+.|+++|++.|++++|.++++.|.++|+. ++..+|..+ ...+|.+..|.. .....
T Consensus 525 ---------p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~---~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 525 ---------PE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV---KKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred ---------CC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE---CCeEEEEccCCCCCccHHHHH
Confidence 11 1234679999999999999999999999999986 333343221 112232222211 12235
Q ss_pred HHHHHHHHHHHhCCCCCceeeee---cc---------hhHHHHHHHHH--hccCCCceeccceEEec-chHHHHhhhc
Q 003353 718 HTLHRFRKRMLYYGVVPRRIKLV---TG---------PTLKIVIAQML--SSVESPFEVSKVVLRAP-GDSVMEWFKK 780 (827)
Q Consensus 718 ~~~~~~~~~m~~~g~~P~~~~~~---tg---------~~~~~~~~~~l--~~~~~pf~~~~~~~~~~-g~~~~~w~~~ 780 (827)
..+.++.++|...|..||.-.+. .. -.-+-+|+--| ..-|+|..|.|-..++- -|+.+...-+
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~ 669 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIAL 669 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhh
Confidence 67888899999999999854331 11 11233333333 34567877777644433 3455554444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=559.26 Aligned_cols=474 Identities=15% Similarity=0.179 Sum_probs=366.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
..+..+|+.+|.++.+.|++++|+++|+.|...+. ..++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~--~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCP--FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 45566888888888888888888888888876541 2578888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
|.|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 8888888888888888888888864 688888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
|+.+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.+ +|.++||++|.+|++.|+.++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888753 57788888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ +
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 888888888888888888888888888888888888888888888888888888888888888888888887754 3
Q ss_pred h-HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 003353 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE-SAAKVDLVLYTSVL 591 (827)
Q Consensus 514 ~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll 591 (827)
+ .+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.||..+|++++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 3 478888888888888888888888888888888888888888888888888888888888865 57788888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCC
Q 003353 592 AHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671 (827)
Q Consensus 592 ~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~ 671 (827)
++|++.|+.++|.++++.+. ..| +..+|++|+.+|.+.|+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~--------------------------------------~~p--~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP--------------------------------------FKP--TVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC--------------------------------------CCC--CHHHHHHHHHHHHHcCC
Confidence 88888888887776654321 111 23567788888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCC
Q 003353 672 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGV 732 (827)
Q Consensus 672 ~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~ 732 (827)
++.|..+++++.+..+ .+..+|..++. +++..|....+.++++.|...|+
T Consensus 510 ~~~a~~~~~~l~~~~p-~~~~~y~~L~~----------~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 510 LELGRLAAEKLYGMGP-EKLNNYVVLLN----------LYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred cHHHHHHHHHHhCCCC-CCCcchHHHHH----------HHHhCCCHHHHHHHHHHHHHcCC
Confidence 8888777777654332 12335555543 44445555566666666666554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-29 Score=305.41 Aligned_cols=506 Identities=15% Similarity=0.090 Sum_probs=386.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+.++...+++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +........++..|.+
T Consensus 370 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 370 GEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD----PELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC----CcchhhHHHHHHHHHh
Confidence 445556677777777777766653 3455566666677777777777777777776654 4445566667777777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|..+++.+....+ .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777788777777776443 367788888888888888888888888887653 23556777788888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
++++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++++|.++++++.+.. .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 88888765 5567788888888888899999999988887765 4466778888888999999999999999888754 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTAL 486 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 486 (827)
.+..+|..+..+|.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...|+++.+. .| +..++..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4678888899999999999999999999887543 36777888889999999999999999998874 34 46788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 566 (827)
...+...|++++|.++++.+.+..+.....+..+...|.+.|++++|.+.|+++.+.+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 8899999999999999999988876666678888889999999999999999998764 44567777888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCcccc-chhHHHHHHHhhc
Q 003353 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK-QPVLSFVREFFHG 645 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 645 (827)
+|.+.++++.+..+. +...+..+...|.+.|+.++|...++.+....+.....+..+.......+ ..+.....+.+.
T Consensus 754 ~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~- 831 (899)
T TIGR02917 754 EAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALK- 831 (899)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHh-
Confidence 999999999987655 78899999999999999999999999987776654444332211111111 223333333332
Q ss_pred cccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 646 ~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
..|+ ...+++.++.+|.+.|+.++|...++++++.++. +..++..+
T Consensus 832 ----~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 832 ----LAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred ----hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 1222 2345679999999999999999999999998875 44444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-28 Score=300.51 Aligned_cols=509 Identities=11% Similarity=0.058 Sum_probs=370.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+.++...++++.|...|+.+.+.. +.+...+..+...+.+.|++++|...++.+.... +.+..++..+...+.+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD----PDDPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHH
Confidence 444556677777777777776653 3455666677777777888888888887777665 6667777788888888
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|.++|+++.+..+. +...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888887765543 6667777777777888888888888877765322 334555667777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+..
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 88887654 5667788888888888888888888888887654 345667777888888888888888888888876533
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..|.+.|++++|..+++++.+. ...+..+|..+.
T Consensus 532 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 608 (899)
T TIGR02917 532 -NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG 608 (899)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 677788888888888888888888888876543 35667778888888888888888888888764 234567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 567 (827)
.++...|++++|.+.++++.+..+.....+..+...|.+.|++++|..+++++.+.. +.+...+..+...+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 888888899999988888887765555577788888888899999998888888643 2246677778888888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHH-hhhccCCccccchhHHHHHHHhhcc
Q 003353 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGI 646 (827)
Q Consensus 568 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (827)
|..+++.+.+.++. +...+..+...+.+.|++++|...++.+....+...... .+......+..+.+......++..
T Consensus 688 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 765 (899)
T TIGR02917 688 AKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT- 765 (899)
T ss_pred HHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 98888888877644 667778888888888999999888888766655543221 111111111222222222222221
Q ss_pred ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhh
Q 003353 647 DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698 (827)
Q Consensus 647 ~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i 698 (827)
.|+ +...++.+++.|.+.|+.++|.+.++++.+..+ ++..+++.+.
T Consensus 766 ----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~ 811 (899)
T TIGR02917 766 ----HPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLA 811 (899)
T ss_pred ----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 121 234567888999999999999999999888765 3444555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-19 Score=225.89 Aligned_cols=495 Identities=11% Similarity=0.050 Sum_probs=311.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~-~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..++...+++++|++.|+.+.... +|+.. ............|+.++|++.++++.+.. |.+..++..+...+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 335667899999999999888764 34432 11122222234689999999999999887 778888999999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCC------------------CC-HHHHH---------------------------------
Q 003353 247 KADKLEMSYCCFKKVLDSDCK------------------ID-TQSYN--------------------------------- 274 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~------------------p~-~~~~n--------------------------------- 274 (827)
..|+.++|+..++++.+.... ++ ...+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999887653210 00 00000
Q ss_pred -HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH---------
Q 003353 275 -VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP-SFNIF--------- 343 (827)
Q Consensus 275 -~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~--------- 343 (827)
.....+...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...|++..+..... ....|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11234455677777777777776642 2256677777777777777777777777777654211 11111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 344 ---ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 344 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122345567777777777777777654 335556666777777777777777777777765322 344555555544
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGFL--------PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~ 491 (827)
. .++.++|...++.+...... .....+..+...+...|++++|++.|++.++ ..|+ ...+..+...|.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3 34455555555443221000 0012234455566677788888888877776 3454 445666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHhHHHHHH--------------------------------------------HHHHc
Q 003353 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM--------------------------------------------VYIKD 527 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~--------------------------------------------~y~~~ 527 (827)
+.|++++|...++++++..+.....+..+.. .+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 7888888888888777654433323332222 34445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
|+.++|.++++. ...+...+..+...+.+.|++++|++.|++.++..+. +...+..+...|...|+.++|...+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555441 1233445566777888999999999999999987665 7888999999999999999999999
Q ss_pred HHHhhccCchhHHHh--hhccCCccccchhHHHHHHHhhccccccccCc----chhhHHHHHHHHHHcCChhHHHHHHHH
Q 003353 608 AILSATKHKAHAFLC--GLFTGPEQRKQPVLSFVREFFHGIDYELEEGA----ARYFVNVLLNYLVLMGQINRARCVWKV 681 (827)
Q Consensus 608 ~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~Li~~l~k~G~~~~A~~v~~~ 681 (827)
+.+....+....... +........ ...+...++.+....+... ...++..+..++.+.|+.++|...|++
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~----~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGD----TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCC----HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 987766554333221 211111122 2344444444321111111 123455668899999999999999999
Q ss_pred HHH
Q 003353 682 AYE 684 (827)
Q Consensus 682 ~~~ 684 (827)
++.
T Consensus 737 Al~ 739 (1157)
T PRK11447 737 AMV 739 (1157)
T ss_pred HHh
Confidence 975
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-19 Score=219.05 Aligned_cols=538 Identities=11% Similarity=0.027 Sum_probs=331.5
Q ss_pred HHHHHHHHHcCCCCccHHHHhhhC-CCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHH---------
Q 003353 135 VAKIVEVVNRWKWGPELETQLDKL-QFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECY--------- 200 (827)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~l~~~-~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~--------- 200 (827)
+..-.++-...+..+.+...+.++ .+.|+... ...++...|+.++|.+.++.+.+.. +.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 333334433334344455555444 45554433 2455567899999999999998875 3444433
Q ss_pred -------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 201 -------VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 201 -------~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
..+...+.+.|++++|.+.|+.+.+.. +++... ...........|+.++|++.++++.+..+. +...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHH
Confidence 223446888999999999999998775 555432 111222223458999999999999987655 7778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCc------------------cCCH-HHHHH-----------------------
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGEC------------------SLDG-STYEL----------------------- 310 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~pd~-~t~~~----------------------- 310 (827)
+..+...+...|+.++|++.++++.+... .++. ..+..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999999865421 0110 01110
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 003353 311 -----------MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-SAPMY 378 (827)
Q Consensus 311 -----------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~ 378 (827)
....+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|+..|++..+..... ....|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 0123445677777777777776654 4456667777777777777777777777766543211 11111
Q ss_pred H------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 003353 379 V------------SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 379 ~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 446 (827)
. .....+.+.|++++|++.|+++.+.... +...+..+...+...|++++|++.|+++.+.... +..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 1 1233455677777777777777765432 4555666667777777777777777777664322 344
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--------PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 518 (827)
.+..+...|. .++.++|..+++.+....-. .....+..+...+...|++++|++.++++++..+.....+.
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555555553 34567777666554321000 00123344556677899999999999999998766556778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------------------
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES-------------------- 578 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------------- 578 (827)
.+...|.+.|++++|...++++.+.... +...+..+...+...|+.++|+..++++...
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8999999999999999999998864321 2222222222233444444444444332110
Q ss_pred -------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHH
Q 003353 579 -------------------AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFV 639 (827)
Q Consensus 579 -------------------g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 639 (827)
....+...+..+...+.+.|+.++|...++......|.......++....... .....+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--GDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 02234556677888888999999999998887776665544433222111111 112334
Q ss_pred HHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 640 REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
...++.+. ...|+ .......+..++.+.|+.++|.++++++.+..+.
T Consensus 657 ~~~l~~ll-~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 657 RAQLAKLP-ATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHh-ccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 44444332 22222 1234457888999999999999999999876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=199.10 Aligned_cols=439 Identities=14% Similarity=0.113 Sum_probs=327.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..-+.+-||+++|.+....+-+++ +.+....-.+-.++.+..+++...+--....+.. +.-..+|..+...+-
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~----~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN----PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc----chHHHHHHHHHHHHH
Confidence 4555566788888888888777665 2334444455566677777776666555555554 666778888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH-HHHHHHHcCCHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL-MIPSLAKSGRLDAAI 325 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-li~~~~~~g~~~~A~ 325 (827)
..|++++|+..++.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+ +.......|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 888888888888888876654 677888888888888888888888888877 3466554433 344445578888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
..+.++++.. +--.+.|+.|...+-..|+...|+..|++..+.. +.-...|-.|...|...+.+++|+..+.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 8888887764 2334678888888888888888888888888753 223457888888888888888888888877664
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 003353 406 FRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTY 483 (827)
Q Consensus 406 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 483 (827)
.|+ .+.+..+...|...|.+|.|+..|++.++.... =...|+.|..++-..|++.+|...|++.+. +.|+ ..+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHH
Confidence 333 556666777788888888888888888875322 356788888888888888888888888887 4555 4577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKN 562 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 562 (827)
+.|...+...|.+++|..+|....+..+.-....+.|...|-++|++++|+..+++.++ +.|+ ...++.+...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 88888888888888888888888876555556788888888888888888888888874 6676 44777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhh
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l 624 (827)
|+.+.|++.+.+.+..++. =....+.|...|--.|+..+|..-++.....+|+..+..|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 8888888888888775444 344677788888888888888888887777777666555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=191.12 Aligned_cols=408 Identities=17% Similarity=0.164 Sum_probs=337.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..++.+..+.+.....-..+.+.. +.-.++|..+.+.+-..|++++|+.+++.+++.. +..+.+|..+..++.
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~----p~fida~inla~al~ 161 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK----PKFIDAYINLAAALV 161 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC----chhhHHHhhHHHHHH
Confidence 4445555666666555555555554 4567899999999999999999999999999987 888999999999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSY-NVLMTLFLNKGLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A 324 (827)
..|+.+.|.+.|.+..+.. |+.... +.+...+...|+.++|...|.+.++. .|. .+.|+.|...+-.+|++..|
T Consensus 162 ~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~a 237 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLA 237 (966)
T ss_pred hcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHH
Confidence 9999999999999998754 554443 44555666689999999999998875 333 45788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
++-|+++.+.+ +.-...|-.|...|...+.++.|...|.+..... +...+.+..|...|...|..|-|+..+++..+.
T Consensus 238 iq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 238 IQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 99999999865 3335789999999999999999999999988753 335678888999999999999999999999885
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HH
Q 003353 405 GFRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-ST 482 (827)
Q Consensus 405 g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t 482 (827)
.|+ ...|+.|..++-..|++.+|.+.|+........ ...+.+.|...|...|.+++|..+|....+ +.|.. ..
T Consensus 316 --~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa 390 (966)
T KOG4626|consen 316 --QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAA 390 (966)
T ss_pred --CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhh
Confidence 444 578999999999999999999999999876432 566788899999999999999999999988 66764 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMK 561 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 561 (827)
.+.|...|-+.|++++|...++++++..+.-...++.+...|-..|+.+.|++.+.+... +.|. ....+.|...|..
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKD 468 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhc
Confidence 889999999999999999999999986554446899999999999999999999999985 3454 4577888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003353 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 594 (827)
.|++.+|+..+++.++..+.. ...|..++.++
T Consensus 469 sGni~~AI~sY~~aLklkPDf-pdA~cNllh~l 500 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCL 500 (966)
T ss_pred cCCcHHHHHHHHHHHccCCCC-chhhhHHHHHH
Confidence 999999999999998855442 22444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-19 Score=198.13 Aligned_cols=301 Identities=11% Similarity=0.085 Sum_probs=205.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID---TQSYNVLMTLF 280 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~n~li~~~ 280 (827)
...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.+.+..++ ...+..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344566778888888888888775 66677788888888888888888888887776432221 24567777778
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS----FNIFASLVDSMGKAGRL 356 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~ 356 (827)
.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 88888888888888877642 33566777788888888888888888888776542221 12345566667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777653 23455666777777777777777777777776533222455667777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCc
Q 003353 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---RKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 437 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~ 513 (827)
.+.. |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.+.++.+
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6643 4445556677777777777777777777766 35777777766665553 346667777777776655544
Q ss_pred h
Q 003353 514 D 514 (827)
Q Consensus 514 ~ 514 (827)
+
T Consensus 352 ~ 352 (389)
T PRK11788 352 K 352 (389)
T ss_pred C
Confidence 4
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=199.59 Aligned_cols=307 Identities=15% Similarity=0.155 Sum_probs=257.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+......+++++|+..|+.+.+.+ +.+..++..+...+.+.|++++|..+++.+......+......++..++..|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3555567799999999999999975 45677899999999999999999999999987542000112357889999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCH----HHHHHHHHHHHHcCCHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG----STYELMIPSLAKSGRLD 322 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~~~~~~g~~~ 322 (827)
+.|++++|..+|+++.+..+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999997643 47889999999999999999999999999886543322 24566778889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
+|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 455678888999999999999999999999976433234678899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHCCCCCC
Q 003353 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS---SGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 403 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.++++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 864 56667788999999999999999999998875 5899999998888775 5689999999999999877777
Q ss_pred HH
Q 003353 480 LS 481 (827)
Q Consensus 480 ~~ 481 (827)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-16 Score=184.47 Aligned_cols=524 Identities=10% Similarity=0.004 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 003353 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208 (827)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~ 208 (827)
..+.++.......++..++...-..+...|+... +...+...|+.++|+..++.+.+.+ +-|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh-
Confidence 3344555555555555566666666666666543 3455556788888888888877764 2333333333 222
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-HHH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY--------LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL-MTL 279 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l-i~~ 279 (827)
+++++|..+++++.... |.+..++..+... |.+.+...+++ + .....+.|+..+.... ...
T Consensus 122 --~~~~kA~~~ye~l~~~~----P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQ----KACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred --ccChhHHHHHHHHHHhC----CCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHH
Confidence 77788888888888776 6667777666665 66554444444 3 3333333344433333 778
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++ +++..+++. .++.+...+..+.+.|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888877533 44446666667776 356 666666443 233566778888888888888888
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHH------------------------------HHHHHHcCCHHHHHHH----------
Q 003353 359 SMKVYMEMQGCGHR-PSAPMYVSL------------------------------IESYAKAGKLDTALRL---------- 397 (827)
Q Consensus 359 A~~~~~~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~l---------- 397 (827)
|.++++++...-.. |...+|--+ +..+.+.++++-++++
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 88888877643222 332222111 2222333333333222
Q ss_pred -----------------------------------------------------HHHHHHc-C-CCCCHHHHHHHHHHHHh
Q 003353 398 -----------------------------------------------------WDEMRIA-G-FRPNFGLFTMIIESHAK 422 (827)
Q Consensus 398 -----------------------------------------------------~~~m~~~-g-~~pd~~t~~~li~~~~~ 422 (827)
|+..... + -.++....+-++..|.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 2222110 0 01111222233444444
Q ss_pred cCC---hhHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 423 SGK---LDIAMSI----------------------FTDMER-AGF-LP--TPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 423 ~g~---~~~A~~~----------------------~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
.+. ..++..+ ++.... .+. ++ +...|..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 333 1111111 111110 011 12 45556666666655 677788887777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003353 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553 (827)
Q Consensus 474 ~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 553 (827)
..|+......+...+...|++++|...++++...... +..+..+...+.+.|+.++|...+++..+.+. .+...+.
T Consensus 505 --~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~ 580 (987)
T PRK09782 505 --RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYW 580 (987)
T ss_pred --hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHH
Confidence 3476555444455556899999999999988665333 34566777788899999999999999987652 2233333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhc--cCCccc
Q 003353 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF--TGPEQR 631 (827)
Q Consensus 554 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~--~~~~~~ 631 (827)
.+...+...|++++|+..+++.++..+ +...+..+..++.+.|+.++|...++......|........+. ......
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 333445566999999999999987654 5778899999999999999999999998887776665543222 111122
Q ss_pred cchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 003353 632 KQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689 (827)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p 689 (827)
.+ .+...++... ...|+. ...+..|..+|.+.|++++|...++++++..+..
T Consensus 659 ~e----eAi~~l~~AL-~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 659 IA----QSREMLERAH-KGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HH----HHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 22 3333333221 223322 3456799999999999999999999999877543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-17 Score=193.43 Aligned_cols=399 Identities=13% Similarity=0.012 Sum_probs=299.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 56677889999999999999985 4678899999999999999999999999999887 8889999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC---------------------------C
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG---------------------------E 300 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g 300 (827)
.|++++|+.-|......+...+... ..++..+.......++...++.-... .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998877654432222221 11111111100011111111110000 0
Q ss_pred ccCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003353 301 CSLDG-STYELMIPS---LAKSGRLDAAIKLFQEMKERN-F-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374 (827)
Q Consensus 301 ~~pd~-~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 374 (827)
..++. ..+..+... ....+++++|.+.|+++.+.+ . +.....|+.+...+...|++++|+..+++..+.. +.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00000 000011000 122468999999999999865 2 3345678888999999999999999999998764 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454 (827)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 454 (827)
...|..+...+...|++++|+..|++..+... .+..+|..+...+...|++++|...|++..+.... +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence 66888999999999999999999999988643 35788999999999999999999999999986432 57778889999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------hHHHHHHHHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-------SASDVLMVYIK 526 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~li~~y~~ 526 (827)
+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|++.|++.++.....+. .+...+..|..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999873 454 678888999999999999999999999987654321 12222334455
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
.|++++|.+++++..+.+. .+...+..+...+.+.|++++|++.|++..+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 7999999999999987642 2344678889999999999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-17 Score=188.48 Aligned_cols=403 Identities=12% Similarity=-0.009 Sum_probs=298.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+......+.+.|++++|+..|++.+... |+...|..+..+|.+.|++++|++.++...+..+. +...|..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 45567888999999999999999998764 46778999999999999999999999999987654 7789999999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE------------------------- 333 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~------------------------- 333 (827)
+|...|++++|+..|......+-..+.. ...++..+........+...++.-..
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 9999999999999887765432111211 11111111110001111111100000
Q ss_pred c--CCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 334 R--NFRPS-FNIFASLVDS---MGKAGRLDTSMKVYMEMQGCG-HRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 334 ~--g~~p~-~~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
. ...+. ...+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0 00000 0000111100 122468999999999999764 223 45678888999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHH
Q 003353 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYT 484 (827)
Q Consensus 406 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~ 484 (827)
.. +...|..+...+...|++++|...|+++.+... .+...|..+...|...|++++|...|++.++ +.|+ ...+.
T Consensus 362 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 362 PR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 32 466788889999999999999999999987643 3678899999999999999999999999998 4564 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN------FIVRQLFES 558 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~ 558 (827)
.+...+.+.|++++|+..+++.++..+.....+..+...+...|++++|++.|++..+.....+. ..++..+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 78889999999999999999999876655567888999999999999999999998875422111 112222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
+...|++++|.+++++.++..+. +...+..+...+.+.|++++|...+++....
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34579999999999999887654 5668899999999999999999999886543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-17 Score=190.36 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=217.2
Q ss_pred CCCCCCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHH
Q 003353 158 LQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237 (827)
Q Consensus 158 ~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 237 (827)
.+-..+...++..+...|+.+.|+.+++.+.... +-+...+..++.++...|++++|...++++.... |.+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~----P~~~~a 112 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN----VCQPED 112 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----CCChHH
Confidence 3334445556666667777777777777777764 4445566666666667777777777777777766 666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
+..+...+.+.|++++|...+++..+..+. +...|..+...+...|++++|...++.+...... +...+..+ ..+..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~ 189 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHH
Confidence 777777777777777777777777765433 5666777777777777777777777766554322 22223222 33666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT---- 393 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---- 393 (827)
.|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 77777777777776665423334444455566677777777777777777654 3355666667777777777764
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
|+..|++..+.... +...+..+...+.+.|++++|...+++..+.... +...+..+...|.+.|++++|...|+++.+
T Consensus 269 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777766664332 4556666677777777777777777776664322 344555666667777777777777776665
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 474 AGLRPGLST-YTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 474 ~g~~pd~~t-~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
. .|+... +..+..++...|+.++|...|+++.+..+
T Consensus 347 ~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 347 E--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred h--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3 344332 22334456667777777777776666543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-17 Score=188.48 Aligned_cols=379 Identities=10% Similarity=0.012 Sum_probs=298.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
-...++..+.+.|++++|..+++..+... +.+..++..++.+....|++++|...|+++.+..+. +...|..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34556777889999999999999999887 777888888888888999999999999999987654 6788899999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+.+.|++++|++.+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999998752 2356788889999999999999999999887765 3334444444 34788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI----AMSIFT 434 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~----A~~~~~ 434 (827)
|...++.+.+....++...+..+...+.+.|++++|++.++++.+.... +...+..+...|...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999887643345555666678889999999999999999987543 67778889999999999986 899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 435 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+..+.... +...+..+...+.+.|++++|...+++..+. .|+ ...+..+..++.+.|++++|.+.++.+.+..+..
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99876433 6778999999999999999999999999984 555 4567778889999999999999999999876554
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003353 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 589 (827)
......+..++...|+.++|...|++..+.... +.......+-.++...+..++....+.++.-..-.-|..+|+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHH
Confidence 334445677889999999999999998865322 1233444555556666777666567776654333345555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=182.29 Aligned_cols=399 Identities=11% Similarity=0.057 Sum_probs=242.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..+..-.|+.++|++++..+.... +.....+..+...+.+.|++++|.+++++.++.. |.+...+..++.++..
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 556666777878887777776532 3455567777777778888888888888877765 6667777777777788
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|...++++.+..+. +.. |..+..++...|+.++|+..++++.+.... +...+..+..++...|..++|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 88888888888877766443 455 777777777778888888888877775322 444555666677777777777777
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHH
Q 003353 328 FQEMKERNFRPSF------NIFASLVDSMG-----KAGRL---DTSMKVYMEMQGC-GHRPSAP-MY----VSLIESYAK 387 (827)
Q Consensus 328 ~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~ 387 (827)
++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 765553 2221 01112222221 11223 5666666666643 1122221 11 111233455
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhH
Q 003353 388 AGKLDTALRLWDEMRIAGFR-PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP---TPSTYSCLLEMHASSGQVDS 463 (827)
Q Consensus 388 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~ 463 (827)
.|++++|+..|+++.+.+.. |+. ....+..+|...|++++|...|+++.+..... .......+..++.+.|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 67777777777777765432 322 12224556777777777777777766532211 12345555556677777777
Q ss_pred HHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 464 AMKLYNSMTSAG-----------LRPGL---STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 464 A~~l~~~m~~~g-----------~~pd~---~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
|..+++.+.+.. -.|+. ..+..+...+...|++++|+++++++....+.....+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 777777776531 01221 2334455566667777777777777766655544566666667777777
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 530 VDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
+++|++.+++..+.. |+ ...+......+.+.|++++|+.+++++++..+.
T Consensus 409 ~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 409 PRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 777777777666533 44 334444444566667777777777777664433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-16 Score=183.70 Aligned_cols=401 Identities=10% Similarity=0.028 Sum_probs=168.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|..+|++..+..+. +...+..++..+...|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~----~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g 97 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM----QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 33444555555555555554322 344444555555555555555555555554443222 3444444445555555
Q ss_pred ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003353 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 364 (827)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 5555555555554431 11233 4444445555555555555555555443 2333344444444445555555554444
Q ss_pred HHHh-----CCCCCCHHHH---HHHHHHHHHcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChh
Q 003353 365 EMQG-----CGHRPSAPMY---VSLIESYAKAGKL---DTALRLWDEMRIA-GFRPNFG-LF----TMIIESHAKSGKLD 427 (827)
Q Consensus 365 ~m~~-----~g~~p~~~~~---~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~----~~li~~~~~~g~~~ 427 (827)
.... .+...+.... ..+.......+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 3221 1111111110 0011111122222 4445455544432 1111110 00 00022233445555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 428 IAMSIFTDMERAGFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP---GLSTYTALLTLLAKRKLVDVAAKIL 503 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~~g~~~~A~~l~ 503 (827)
+|+..|+.+.+.+.. |+.. -..+...|...|++++|+..|+++.+..-.. .......+..++...|++++|.+++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 555555555543321 2111 1112344555555555555555544321000 0123333344445555555555555
Q ss_pred HHHHHCCCC-----------ch----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 504 LEMKTMGYS-----------VD----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568 (827)
Q Consensus 504 ~~m~~~g~~-----------~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 568 (827)
+.+.+..+. |+ .....+...+...|+.++|+++++++.+.. +-+...+..+...+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 555443210 11 012233444445555555555555554332 11233444444445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCc
Q 003353 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616 (827)
Q Consensus 569 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~ 616 (827)
++.+++.++..+. +...+......+.+.|++++|..+++.+....|.
T Consensus 413 ~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 413 ENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 5555555443322 2334444444455555555555555554444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-15 Score=177.69 Aligned_cols=542 Identities=9% Similarity=-0.033 Sum_probs=342.3
Q ss_pred ccCCCCCccccccCcCCCCCCHHHHHHHHHHHH-cCCCCccHHHHhhhCCCCCCHHHHHHHHHccCChhHHHHHHHHHHh
Q 003353 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVN-RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKR 189 (827)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~ 189 (827)
+|+..|.+++... |. ++.....+..... ..+...++...-......|+.......+..++++++|..+++.+..
T Consensus 62 ~A~~~l~~Al~~d----P~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQV----PD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHhC----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHH
Confidence 7777888887766 66 3444444444433 3444455555555566777777666666667888888888888887
Q ss_pred CCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 190 QSWYVPGDECYVMLFDV--------LNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 190 ~~~~~p~~~~~~~li~~--------l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
.. +-+...+..+... |.+. ++|.+.++ ...... .++.. ..-.+...|.+.|++++|++++.+
T Consensus 137 ~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~---~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 137 QQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA---SPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred hC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 65 3344555544444 4444 34444443 221111 22233 333447777777777778777777
Q ss_pred hHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLN-KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-P 338 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p 338 (827)
+.+.++. +..-+..|..+|.+ .++ +++..+++.. ++-|...+..+...|.+.|+.++|.+++.++...... |
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 7776643 44445556666666 255 5666664431 2246666667777777777777777666655432111 1
Q ss_pred CHHH----------------------------------------------------------------------------
Q 003353 339 SFNI---------------------------------------------------------------------------- 342 (827)
Q Consensus 339 ~~~t---------------------------------------------------------------------------- 342 (827)
...+
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 1111
Q ss_pred -----------------HHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH---
Q 003353 343 -----------------FASLVDSMGKAGRLDTSMKVYMEMQGC-G-HRPSAPMYVSLIESYAKAGK---LDTALRL--- 397 (827)
Q Consensus 343 -----------------~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~---~~~A~~l--- 397 (827)
...+.-...+.|+.++|.++++..... + ...+....+-++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 011111123345566666666665541 1 12344455577777777765 3344333
Q ss_pred -------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 398 -------------------WDEMRIA-GF-RP--NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454 (827)
Q Consensus 398 -------------------~~~m~~~-g~-~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 454 (827)
.+..... +. .+ +...|..+..++.. ++.++|...+.+..... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 23 56677777777776 89999999888877653 565444445555
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|.+.+++.++..+........+.....+.|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 67899999999999998763 4555666777788899999999999999999876444334444444555679999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
..+++..+.. |+...+..+...+.+.|++++|+..+++.++..+. +...+..+..++...|+.++|...++......
T Consensus 597 ~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998654 56778888888999999999999999999998766 67788888899999999999999999887777
Q ss_pred CchhHHHhhh--ccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 615 HKAHAFLCGL--FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 615 ~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
|........+ .....+..+ .+...++... ...|+.. .+....++.+.+..++++|.+-+++.+...
T Consensus 674 P~~~~a~~nLA~al~~lGd~~----eA~~~l~~Al-~l~P~~a-~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMA----ATQHYARLVI-DDIDNQA-LITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHH-hcCCCCc-hhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7655443222 221122222 3333333321 2233322 223367788888888888888887776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-14 Score=166.68 Aligned_cols=437 Identities=9% Similarity=0.038 Sum_probs=323.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..+..+.|+++.|+..|+.+.+.. +.+. ..+ -++..+...|+.++|+..+++..... +........+...|.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~----n~~~~~llalA~ly~ 113 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM----NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC----CCCHHHHHHHHHHHH
Confidence 444557899999999999999875 2222 233 77788888999999999999998322 455556666678999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|+++|+++.+..+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999998766 6777888889999999999999999999875 4666666555555555667767999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHH---------cCC---HH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY--VSLIESYAK---------AGK---LD 392 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~---------~g~---~~ 392 (827)
.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-..+ ..+ .+
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999986 667788888999999999999998877654321 11111111 000111111 122 34
Q ss_pred HHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003353 393 TALRLWDEMRIA-GFRPNF-GLF----TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 393 ~A~~l~~~m~~~-g~~pd~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...|.+....+--++.++|...++.++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455556665542 222322 111 23455778899999999999999988766455677889999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CchH----hHHHHHHHHHH
Q 003353 467 LYNSMTSAG-----LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY-----------SVDV----SASDVLMVYIK 526 (827)
Q Consensus 467 l~~~m~~~g-----~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~~~~----~~~~li~~y~~ 526 (827)
+|.++.... ..++......|.-++...+++++|..+++.+.+..+ .|+. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999997642 122344457788899999999999999999988433 1222 23445677889
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
.|+..+|.+.++++.... +-|..+...+...+...|.+.+|++.++......+. |..+......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999997654 336778888888899999999999999877766444 677888888899999999999999
Q ss_pred HHHHhhccCchh
Q 003353 607 MAILSATKHKAH 618 (827)
Q Consensus 607 ~~~l~~~~~~~~ 618 (827)
++.+....|...
T Consensus 507 ~~~l~~~~Pe~~ 518 (822)
T PRK14574 507 TDDVISRSPEDI 518 (822)
T ss_pred HHHHHhhCCCch
Confidence 988776655433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-14 Score=160.73 Aligned_cols=555 Identities=13% Similarity=0.082 Sum_probs=382.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCC----CCCCHHH-HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 003353 127 KPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ----FVPKMVH-ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201 (827)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~----~~p~~~~-~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~ 201 (827)
+|...++.+.+++-.+.+..+-.++.-+...+. ..||+.. ....+..+++.+.|+..|..+.+.+ +.++.++.
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv 237 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALV 237 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHH
Confidence 355567778888888887766665554444333 2344433 3455567888888999999998875 23444444
Q ss_pred HHHHHHHh---cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHH
Q 003353 202 MLFDVLNE---SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVL 276 (827)
Q Consensus 202 ~li~~l~~---~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~l 276 (827)
.|...-.. ...+..+..++...-..+ +.++.+.+.|...|.-.|+++.+..+...+...... .-..+|--+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44333333 334566777777776666 788899999999999999999999998888764311 112356778
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-- 354 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-- 354 (827)
.++|-..|++++|...|.+..+..-.--+..+-.|...+.+.|+++.+...|+...+.. +.+..|...|...|+..+
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 88999999999999999888765322113455677888999999999999999998875 666778888888888775
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003353 355 --RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM----RIAGFRPNFGLFTMIIESHAKSGKLDI 428 (827)
Q Consensus 355 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~pd~~t~~~li~~~~~~g~~~~ 428 (827)
..+.|..++.+..+.- +.|...|-.+...+.. ++...++..|... ...+-.+.....|.+...+...|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 5677777777776654 4467778777766654 4444446666543 344555677888999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 003353 429 AMSIFTDMERA---GFLPTP------STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDV 498 (827)
Q Consensus 429 A~~~~~~m~~~---g~~p~~------~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~ 498 (827)
|...|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+. .|.-+ .|..++-.....+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHH
Confidence 99999987754 122222 22333556667778899999999999883 46544 44444433334578888
Q ss_pred HHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHH------------HcCCH
Q 003353 499 AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG-IRTNNFIVRQLFESCM------------KNALY 565 (827)
Q Consensus 499 A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~------------~~g~~ 565 (827)
|...+.++....-.....+.-+...|.+...+..|.+-|....+.- ..+|.+..-+|.+.|. ..+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 9999988887655555566667778888888888888666665432 2367777767766554 33467
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCch-hHHH-hhhccCCccccchhHHHHHHHh
Q 003353 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFL-CGLFTGPEQRKQPVLSFVREFF 643 (827)
Q Consensus 566 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~-~~~~-~~l~~~~~~~~~~~~~~~~~~~ 643 (827)
+.|+++|.+.++..++ |...=+.+.-.++.+|++.+|+.+|.+...+..+. +..+ .+.+.. .+.....+.+++
T Consensus 629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~----e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV----EQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH----HHHHHHHHHHHH
Confidence 8899999999988777 77777888889999999999999999988765422 2111 000000 011122333333
Q ss_pred hccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 644 ~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
+..-...-+...+.+.++|..++.+.|.+.+|.+....+....|....+.||..
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 332112223334556789999999999999999999999888887777777743
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-13 Score=158.43 Aligned_cols=442 Identities=12% Similarity=0.080 Sum_probs=328.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHH----HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 003353 128 PFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMV----HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203 (827)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~----~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~l 203 (827)
|......+..++...+.....+++...-..+...|+.. ..+.++...|+.++|+..++.+... .+........+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llal 108 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASA 108 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHH
Confidence 33344567777888888777777777777777777642 3456666789999999999998832 23444455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++++|.++|+++++.. |.+..++..++..|...++.++|++.++++.... |+...+..++..+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d----P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~ 182 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD----PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc
Confidence 778899999999999999999998 8888888899999999999999999999998764 5555665555555556
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-----Hh
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF------ASLVDSM-----GK 352 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~li~~~-----~~ 352 (827)
++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.+. +.+....+ ..++..- ..
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 67767999999999874 336777888999999999999998776653321 11111111 1111100 01
Q ss_pred cCC---HHHHHHHHHHHHhC-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 353 AGR---LDTSMKVYMEMQGC-GHRPS-APM----YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 353 ~g~---~~~A~~~~~~m~~~-g~~p~-~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+ .+.|+.-++.+... +-.|. ... .--.+-++...|++.++++.|+.|...|......+-.++.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 122 34455555555541 11232 222 2234567889999999999999999988665566888999999999
Q ss_pred CChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-------------CCCCHH-HHH
Q 003353 424 GKLDIAMSIFTDMERAG-----FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-------------LRPGLS-TYT 484 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~-t~~ 484 (827)
++.++|..+|+.+.... ..++......|..+|...+++++|..+++.+.+.- ..||-. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999997643 12345556789999999999999999999998731 123333 334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcC
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNA 563 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 563 (827)
.++..+...|++.+|++.++++....+........+.+.+...|.+.+|++.++.+... .|+ ..+....+.++...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhh
Confidence 45667889999999999999999988777778889999999999999999999777654 454 456667777888999
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 003353 564 LYESAKPLLETYVESAAK 581 (827)
Q Consensus 564 ~~~~A~~~~~~m~~~g~~ 581 (827)
++++|..+.+.+.+..++
T Consensus 499 e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 499 EWHQMELLTDDVISRSPE 516 (822)
T ss_pred hHHHHHHHHHHHHhhCCC
Confidence 999999999999887555
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-13 Score=149.91 Aligned_cols=504 Identities=13% Similarity=0.055 Sum_probs=347.7
Q ss_pred HHHHccCChhHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 169 QALKVINDSDTSLSLFRWAKRQS-WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 169 ~~l~~~~~~~~Al~~f~~~~~~~-~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
.+...-+++..|+.+|+.+.+.+ ..+||+. -.+..++.+.|+.+.|+..|...++.+ |.++.++-.|...-..
T Consensus 172 ~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd----p~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD----PTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC----hhhHHHHHHHHHHHHH
Confidence 33445578888888888876653 3445543 233466678888888888888888876 6666665555444333
Q ss_pred c---CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc--CCHHHHHHHHHHHHHcCCHH
Q 003353 248 A---DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS--LDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 248 ~---g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~ 322 (827)
. ..+..+..++...-..... |++..+.|...|.-.|+++.++.+...+...-.. .-...|--+.++|-..|+++
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 3 3456677777766655443 7788889999999999999999999988765311 12345778889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG----KLDTALRLW 398 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 398 (827)
+|...|.+..+..-.-.+..+-.+...|.+.|+++.+...|+...+.. +.+..+...+...|...+ ..+.|..++
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999999998876522224455678899999999999999999998764 445678888888887775 567777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME----RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 399 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
.+..+.-+ -|...|-.+...+... +...++.+|.... ..+-.+-+...|.+...+...|++++|...|.+....
T Consensus 404 ~K~~~~~~-~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQTP-VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 77776543 3677777776666554 4444466666543 4555678889999999999999999999999988764
Q ss_pred ---CCCCCH-----H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 475 ---GLRPGL-----S-TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 475 ---g~~pd~-----~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
...+|. . +--.+...+...++.+.|.+.|..+++..+.--..+-.++-+-...+...+|...+....+.+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 223333 1 222344456678899999999999998755433445555544445578889999999888643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhh
Q 003353 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHLVR------------CQDEQNERHLMAILSA 612 (827)
Q Consensus 546 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~------------~g~~~~a~~l~~~l~~ 612 (827)
..+...++.+...+.+...+..|.+-|+...+.- ..+|.....+|.+.|.+ .+..++|.+++.+...
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 2344444444446777777888888777766542 33688888888876654 2345777888887777
Q ss_pred ccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 613 TKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 613 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+.|.+.....|+..-.... .-.+.+...|.++........+.++ .|.+.|..+|++..|.++|+...++-.
T Consensus 641 ~dpkN~yAANGIgiVLA~k--g~~~~A~dIFsqVrEa~~~~~dv~l--Nlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEK--GRFSEARDIFSQVREATSDFEDVWL--NLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cCcchhhhccchhhhhhhc--cCchHHHHHHHHHHHHHhhCCceee--eHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7765554433432222122 2244566666665433333334444 799999999999999999999987644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-10 Score=124.77 Aligned_cols=475 Identities=11% Similarity=0.040 Sum_probs=369.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
.++++.+.+.. +.++..|-..+ ...+.++|..++.+..+.- +.+...|. +|++..-++.|..++++
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvecc----p~s~dLwl----AlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVECC----PQSMDLWL----ALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHhc----cchHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45666666652 44555565443 4556666888888888764 66666654 56777889999999999
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh----HhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM----EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
..+.- +.+...|.+-...=-.+|+.+...++.++- ...|+..+...|-.=...|-+.|..-.+..+....+..|+
T Consensus 432 aRe~i-ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 432 AREII-PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHhhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 98754 458899988777777889999988887664 5678999999998888899999999999999999988886
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003353 337 RP--SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414 (827)
Q Consensus 337 ~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 414 (827)
.- -..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......--..|..++...+|++....-. -....|-
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwl 588 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWL 588 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHH
Confidence 53 34689999999999999999999999988753 44667888887777778999999999999988643 3556666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
.....+-..|+...|..++....+.... +...|-+-+..-..+.++++|..+|.+... ..|+...|..-+......+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 6677778899999999999999987544 788899999999999999999999999987 5688888888888788899
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
..++|.+++++.++.-+.-...|..+...+-+.++++.|.+.|..-.+ ..|+ ...|-.|...-.+.|..-.|..+|+
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 999999999999997665556788888899999999999998876553 2344 4466666666668899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HhhccCchhHHHhhhccCCccccchhHHHHHHHhhcccccccc
Q 003353 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI-LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652 (827)
Q Consensus 574 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (827)
+..-.+++ |...|-..|..=.|.|..+.|..++.+ ++.|....--....++..+..+... .....+.....+
T Consensus 744 rarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT---ks~DALkkce~d--- 816 (913)
T KOG0495|consen 744 RARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT---KSIDALKKCEHD--- 816 (913)
T ss_pred HHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch---HHHHHHHhccCC---
Confidence 99988888 889999999999999999999998765 5555543222223333322222221 122223332212
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 653 GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 653 ~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+.+.=+...++|.-.++++|++-|+++++.++
T Consensus 817 ---phVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 817 ---PHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 23334788999999999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-12 Score=128.34 Aligned_cols=401 Identities=14% Similarity=0.210 Sum_probs=284.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc--CCH-------------------------
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA--DKL------------------------- 251 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~--g~~------------------------- 251 (827)
+=+.++. +...|.+.++.-+|+.|.+.+. +.+..+-..|...-+-- .+.
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~---~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENV---DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCC---CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4455554 4567889999999999999886 66666655554432221 111
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
+-|.-+|+... ....+|..||.++|+--..+.|.+++++-.+...+.+..+||.+|.+-.- ....+++.+|
T Consensus 194 ~vAdL~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 194 AVADLLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cHHHHHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 11222222222 36679999999999999999999999999988888999999999987543 3338899999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--
Q 003353 332 KERNFRPSFNIFASLVDSMGKAGRLDT----SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT-ALRLWDEMRIA-- 404 (827)
Q Consensus 332 ~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~-- 404 (827)
....+.||..|+|+++++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998775 45677889999999999999999999999888744 55555555432
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 405 --GFRP----NFGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPT---PSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 405 --g~~p----d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
.++| |...+...++.|.+..+.+.|.++..-+... -+.|+ ..-|..+....|+....+.-+..|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 4556777888888999999999887766532 12233 234667888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcC-C--------HH-----HHHHH
Q 003353 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDG-S--------VD-----HALRW 536 (827)
Q Consensus 472 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g-~--------~~-----~A~~~ 536 (827)
.-.-.-|+..+...++++..-.|.++-.-+++.+++..|..-.. .-.-++..+++.. + +. -|..+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 98777899999999999999999999999999998887743332 1222222333222 0 00 11112
Q ss_pred HH-------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHH---HHHHHHHhcCCHHHHHH
Q 003353 537 LR-------FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-VDLVLYT---SVLAHLVRCQDEQNERH 605 (827)
Q Consensus 537 ~~-------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~---~ll~a~~~~g~~~~a~~ 605 (827)
++ +|..... ....++...--+.+.|..++|.++|..+.+.+-+ |-....+ -++++-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11 2222222 3445555555677999999999999998765543 3333444 55566677778888888
Q ss_pred HHHHHhhcc
Q 003353 606 LMAILSATK 614 (827)
Q Consensus 606 l~~~l~~~~ 614 (827)
.++.+...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 877775543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-12 Score=131.92 Aligned_cols=361 Identities=13% Similarity=0.159 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+..+|..||.++++--..+.|.+++++.....+ ..+..++|.+|.+-.-... .++..+|....+.||..|+|+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~---kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKG---KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh---eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 445566666666665555666666665555443 5555566655554332221 455555555555566666666
Q ss_pred HHHHHHHcCChhH----HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH----HcCCC----CCHHH
Q 003353 276 LMTLFLNKGLPYK----AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA-AIKLFQEMK----ERNFR----PSFNI 342 (827)
Q Consensus 276 li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~-A~~~~~~m~----~~g~~----p~~~t 342 (827)
++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. .+.++ .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 6666666555443 34455555556666666666666665555555422 222222222 11111 12333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCG----HRPS---APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
|...++.|.+..+.+-|.++..-..... +.|+ ..-|..+..+.|+....+.-...|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 4445555555555555555544333210 1122 12344455555555555555566666555555555555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-K 494 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-g 494 (827)
++.+..-.|+++-.-+++.++...|.. ++.. --++++..|.+....|+...-..+-.+.++. -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~-----------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHT-----FRSD-----------LREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHH-----------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 555555555555555555555543311 1111 1122333333332333322111111111110 0
Q ss_pred CHHH-HHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 495 LVDV-AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAK 569 (827)
Q Consensus 495 ~~~~-A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~ 569 (827)
++-+ .+..-.++.+... +....+.+...+.+.|+.++|-++|....+++- .|.-.....++++-.+......|.
T Consensus 503 d~~e~~e~~~~R~r~~~~-~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDW-PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHHhhHHHHHhccC-ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 1111122332222 223456666678899999999999998865542 233333446667777888888888
Q ss_pred HHHHHHHHCCC
Q 003353 570 PLLETYVESAA 580 (827)
Q Consensus 570 ~~~~~m~~~g~ 580 (827)
..++-|...+.
T Consensus 582 ~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 582 EVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHcCc
Confidence 88888865543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-11 Score=135.98 Aligned_cols=363 Identities=12% Similarity=0.051 Sum_probs=224.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
.-.|++++|.+++.++++.. +.+...|..|...|-..|+.+++...+-..-...++ |...|-.+.....+.|+++
T Consensus 150 farg~~eeA~~i~~EvIkqd----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 33466666666666666665 666666666666666666666666655544443333 5566666666666666666
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF----ASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~li~~~~~~g~~~~A~~~~ 363 (827)
+|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.+...+.|..-+ -.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666542 224444444455566666666666666666655422222212 22334445555556666666
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 003353 364 MEMQGCG-HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF---------------------------RPNFGLFTM 415 (827)
Q Consensus 364 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~pd~~t~~~ 415 (827)
+.....+ -..+...++.++..+.+...++.|......+..... .++.... -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 6655411 123344566666666666666666666666554221 2222221 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAG--FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 493 (827)
++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223344444444555555555554 33356678888889999999999999999888764444677888888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCCH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS--------GIRTNNFIVRQLFESCMKNALY 565 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~ll~~~~~~g~~ 565 (827)
|.+++|.+.++..+...+.....-.+|...|.+.|+.++|.+.++.+... +..|+.-+.......+.+.|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999988866555556667777888899999999988886522 2344544555555667788888
Q ss_pred HHHHHHHHHHHH
Q 003353 566 ESAKPLLETYVE 577 (827)
Q Consensus 566 ~~A~~~~~~m~~ 577 (827)
++=+.+..+|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 876666666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-10 Score=126.00 Aligned_cols=358 Identities=10% Similarity=0.050 Sum_probs=178.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCCCCHHHHHHHHHHHH
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH----DSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~~~~li~~~~ 246 (827)
|.++.-++.|.+++..+++. .+.++..|.+-...=-.+|+.+...++.++-+. .|+ ..+...|-.=...|-
T Consensus 416 larLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv---~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV---EINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce---eecHHHHHHHHHHHh
Confidence 33334444444444444443 234444444444444444444444444443222 222 344444444444444
Q ss_pred HcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
+.|..-.+..+....+.-|++- -..||+.-...|.+.+..+-|..+|...++- .+-+...|......--.-|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 4444444444444444433321 1234555555555555555555555555442 122333444444333344555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
..+|+++...- +-....|.....-+-..|++..|..++.+..+.. +.+...|-.-+.....+..++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 55555555442 3333445545555555566666666666655543 224455555555556666666666666655542
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHH
Q 003353 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-STY 483 (827)
Q Consensus 405 g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~ 483 (827)
.|+...|.--+...--.+..++|.+++++.++. ++--...|-.+...+-+.++++.|.+.|..-.+ ..|+. ..|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 344444444444444455666666666555543 211233455555555556666666655555444 23433 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
..|...-.+.|.+-.|..+++...-.+++....|...|.+=.+.|+.+.|..+..+++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555666666666666666666555566666666666666666665555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-10 Score=126.73 Aligned_cols=507 Identities=11% Similarity=0.115 Sum_probs=335.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...|+.++|.+++..+.++. +.....|.+|...|-+.|+.+++...+-.+.... |.|...|..+.....+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHh
Confidence 334445599999999999999997 5778899999999999999999999887777766 8888999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH----HHHHHHHHHHHcCCHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYELMIPSLAKSGRLDA 323 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~li~~~~~~g~~~~ 323 (827)
.|.+++|.-+|.+.++..+. +...+---+..|-+.|+...|.+.|.++.+...+.|.. +--.+++.+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999998754 55554556778899999999999999998864322222 23344566777788899
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------CCCH
Q 003353 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH---------------------------RPSA 375 (827)
Q Consensus 324 A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~ 375 (827)
|.+.++.....+ -..+...++.++..|.+...++.|......+..... .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999998887632 234556788999999999999999988887776211 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAG--FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453 (827)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 453 (827)
.... +.-++.+....+....+.....+.. +.-+...|.-+.++|...|++.+|..+|..+......-+...|-.+..
T Consensus 379 ~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 2212 2223444444444445555555554 444567788899999999999999999999997655557889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCchH-hHHHHHHH
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTMG--------YSVDV-SASDVLMV 523 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~~~-~~~~li~~ 523 (827)
+|-..|.+++|.+.|+..+. +.|+.. .-.+|-..+.+.|+.|+|.+.+..+..-+ ..|+. ......+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998 566543 55566677889999999999999876322 22222 23455667
Q ss_pred HHHcCCHHHHHHHHHHHhhCC-----CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHH------HHH
Q 003353 524 YIKDGSVDHALRWLRFMGSSG-----IRT-----------------NNFIVRQLFESCMKNALYESAKPLL------ETY 575 (827)
Q Consensus 524 y~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~g~~~~A~~~~------~~m 575 (827)
|.+.|+.++=+.+-..|+... +-| ........+.+-.+.++.....+-. .--
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 888898887666555554311 101 1111112222222332211111111 111
Q ss_pred HHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---Cchh-----HHHhhhccC-CccccchhHHHHHHHhh
Q 003353 576 VESAAKVD-L-VLYTSVLAHLVRCQDEQNERHLMAILSATK---HKAH-----AFLCGLFTG-PEQRKQPVLSFVREFFH 644 (827)
Q Consensus 576 ~~~g~~pd-~-~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~---~~~~-----~~~~~l~~~-~~~~~~~~~~~~~~~~~ 644 (827)
...|..-| . ..+.-++.++++.++.++|..+...+.... .... .+ +++... ....-+.+.+.++.++.
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~-~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQF-LGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11222222 2 355667778888888888888766544322 1111 11 121111 11122334455555443
Q ss_pred ccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 645 ~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
.......+ --..+||+..+.+.+.|+-..=.+.+..+....
T Consensus 695 ~~~~~~~~-~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~ 735 (895)
T KOG2076|consen 695 QFQFYLDV-YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKN 735 (895)
T ss_pred HHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 31111010 114567877788888887776666666654443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-12 Score=131.16 Aligned_cols=434 Identities=12% Similarity=0.108 Sum_probs=282.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~-~~li~~l~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
...+|+..++-+.+..-| |+...+ -.+.+.+.+.+.+.+|++.++-.+..-.. +........+.+...+.+.|.+++
T Consensus 216 m~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 345688888877776544 443333 34667788999999999999877754210 112234567777788899999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccC------------CHHHHHHHHH-----HHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL------------DGSTYELMIP-----SLA 316 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------d~~t~~~li~-----~~~ 316 (827)
|+..|+...+.. ||..+--.|+-++..-|+.++..+.|.+|+.....| +....+..|+ -.-
T Consensus 295 ainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 999999988753 787765556666667899999999999998643333 3333332222 222
Q ss_pred HcCC--HHHHHHHHHHHHHcCCCCCHHH---H------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003353 317 KSGR--LDAAIKLFQEMKERNFRPSFNI---F------------------ASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373 (827)
Q Consensus 317 ~~g~--~~~A~~~~~~m~~~g~~p~~~t---~------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 373 (827)
+.+. -+++.-.--+++.--+.|+... | -.-..-|.+.|+++.|.+++.-..+..-+.
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 2111 1112111112221112222110 0 011234678999999999998887654222
Q ss_pred CHHHHHHHHHHH-HH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 374 SAPMYVSLIESY-AK-AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 374 ~~~~~~~li~~~-~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
-...-|.|-..+ .+ ..++.+|.+.-+...... .-|....+.-.......|++++|.+.|++.+...-.-....|| +
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-i 530 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-I 530 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-h
Confidence 222223222222 22 346778887777665432 1233333333344556899999999999998753322223333 2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.-.+-..|++++|++.|-.+..- +.-+......+.+.|....+..+|++++.+....-+........|.+.|-+.|+-.
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 33567789999999999877652 23456677788888999999999999998887654444457788999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL-VRCQDEQNERHLMAIL 610 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~l~~~l 610 (827)
.|.+..-.--+ -++.+..++.-|..-|....-+++|+..|++.. -+.|+..-|-.++..| -|.|++++|..+++..
T Consensus 610 qafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 610 QAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99888765442 244566677777777888888899999999864 3789999998888655 4589999999998877
Q ss_pred hhccCchh
Q 003353 611 SATKHKAH 618 (827)
Q Consensus 611 ~~~~~~~~ 618 (827)
-..-|...
T Consensus 687 hrkfpedl 694 (840)
T KOG2003|consen 687 HRKFPEDL 694 (840)
T ss_pred HHhCccch
Confidence 65554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-09 Score=111.03 Aligned_cols=443 Identities=10% Similarity=0.147 Sum_probs=319.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|-.-..-=...+++..|.++|+..+... ..+...|-.-+.+-.++..+..|..++++....-+..|. .|--
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyK 146 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYK 146 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHH
Confidence 44455544444456778888899999888776 677888888888889999999999999888765433333 3444
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
.+..=-..|+...|.++|++..+ ..|+...|.+.|+.=.+-+.++.|..++++..- +.|++.+|--....=-+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 44454557889999999988876 578999999999988888999999999988875 35888888888888888899
Q ss_pred HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003353 356 LDTSMKVYMEMQGC-GH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN-FGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 356 ~~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
...|..+|+...+. |- .-+...+.+....=.+...++.|.-+|+-..+.-..-. ...|......--+-|+.....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999887753 10 11223444444444456778888888887776532211 33444444433345554333322
Q ss_pred --------HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHH-----HHH---HhcC
Q 003353 433 --------FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS--TYTALL-----TLL---AKRK 494 (827)
Q Consensus 433 --------~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li-----~~~---~~~g 494 (827)
++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|...| -+| ....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444443 237778888888888899999999999999875 555321 222211 122 2478
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHH----HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVY----IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
+++.+.++++..++.-+....++..+=.+| .++.++..|.+++.... |.-|-..++...|..-.+.+.++.+..
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999984333334555443344 47899999999999887 788999999888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhcccccc
Q 003353 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYEL 650 (827)
Q Consensus 571 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (827)
++++.++-++. |..+|.....-=-..|+.+.|+.+++....... + ++
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--------------------l------------dm 505 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPA--------------------L------------DM 505 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--------------------c------------cc
Confidence 99999998887 888998887777778999999999876543111 0 11
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 651 ~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
.-..|-+.||.=...|..++|+.++++.+++...
T Consensus 506 ----pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 506 ----PELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ----HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 1245678888888899999999999999988654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-10 Score=117.17 Aligned_cols=357 Identities=12% Similarity=0.040 Sum_probs=261.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC--HHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD--GSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~ 309 (827)
..|...+-.....+.+.|....|++.|......- +..|.+-+....-.-+.+.+. ..... ...| ...=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~----~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILS----ILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHH----HHHhc-CcccchHHHHH
Confidence 5667777777777888899999999998887632 234444333322222233222 22211 1111 12223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPSAPMYVSLIESYAK 387 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~ 387 (827)
.+..++-...+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+... --|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 45567777788999999999999999877666666666777788999999999999998742 126678877663 33
Q ss_pred cCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 388 AGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 388 ~g~~~~A~~l~~~m--~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
+.+-. +..+.+- .-...+| .|...+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 33222 1122211 1122333 56677788888899999999999999987544 6678999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 466 KLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 466 ~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
+.|++.++ +.| |-..|-.|.++|.-.+...-|+-+|+++.+..+.....|.+|...|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999998 555 566999999999999999999999999999777666799999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 003353 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVES----AAKVDLV--LYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 545 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~--t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
- .+...+..|.+.|.+.++.++|...|++.++. |...|.. ...=|...+.+++++++|....
T Consensus 463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3 36678889999999999999999999988762 4343322 2222556778888888887644
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=128.59 Aligned_cols=289 Identities=10% Similarity=-0.017 Sum_probs=185.0
Q ss_pred HcCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 282 NKGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
..|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.++.+..-.+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468888888888777664 3443 3344455667778888888888888876532222234444577777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH---HhcCChhHHHHHHHHH
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-TMIIESH---AKSGKLDIAMSIFTDM 436 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~~---~~~g~~~~A~~~~~~m 436 (827)
..++++.+.. +-+...+..+...+.+.|++++|.+++..+.+.++. +...+ ..-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888775 346667778888888888888888888888887654 32222 1111111 2222333333444444
Q ss_pred HHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHH--HHHhcCCHHHHHHHHHHHHHCC
Q 003353 437 ERAGF---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT-ALLT--LLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 437 ~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~li~--~~~~~g~~~~A~~l~~~m~~~g 510 (827)
.+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++. .....++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44321 126777778888888888888888888888874 34443110 1222 2233466677777777777665
Q ss_pred CCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 511 YSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 511 ~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
+... ....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5444 34456677777777777777777754433445676666677777777777777777777643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-10 Score=128.84 Aligned_cols=285 Identities=11% Similarity=0.064 Sum_probs=188.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+..+.+...........+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~-----~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-----EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 688888887777655432 22333 333344447788888888888888765433222222233567777888888
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGKAGRLDTSMK 361 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~ 361 (827)
|.+.++++.+... -+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888877642 25667778888888888888888888888877643222 123333333334445555556
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 362 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66555432 1346667777778888888888888888777764 3343211 23333455777888888877776543
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 442 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
. |...+.++...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 566677777888888888888888888877 567877777777788888888888887776654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-09 Score=109.07 Aligned_cols=426 Identities=11% Similarity=0.073 Sum_probs=319.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++...|..+|+.++..+ ..+...|-.-+..=.+++.+..|..+++..+..- |.-...|-..+.+--..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l----PRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL----PRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc----chHHHHHHHHHHHHHHhcccH
Confidence 5567778999999999875 4677788888999999999999999999999875 666678888888888999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
-|.++|++-.+- .|+..+|++.|..=.+-+..+.|..+|++..- +.|++.+|--..+-=.+.|+...|.++|+.+.
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999998764 69999999999999999999999999999987 56999999999998899999999999999987
Q ss_pred Hc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHH
Q 003353 333 ER-NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS--APMYVSLIESYAKAGKLDTALRL--------WDE 400 (827)
Q Consensus 333 ~~-g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l--------~~~ 400 (827)
+. |- ..+...+.+....=.++..++.|.-+|.-.++.- +.+ ...|......=-+-|+....... ++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 64 10 1122344555555556778888888888777642 222 34555555444455664443332 233
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HHcCCHhHHHHHHHH
Q 003353 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS-------TYSCLLEMH---ASSGQVDSAMKLYNS 470 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~li~~~---~~~g~~~~A~~l~~~ 470 (827)
+...+ .-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|--+=.++ ....+++.+.++|+.
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34433 336777777788888889999999999998874 444221 121111122 356889999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 471 MTSAGLRP-GLSTYTALLTLLA----KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 471 m~~~g~~p-d~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
.++ +-| ..+||..+--.|+ ++.++..|.+++..++...+++ ..+...|..=.+.+.++...+++++.++-+.
T Consensus 392 ~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 988 445 4557766655554 5788999999999888654433 3566677777788999999999999998653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 546 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
. +..+|.....--...|+.+.|..+|+-.++.. .......|-+.|+-=..+|.+++|+.+++.+.....
T Consensus 469 e-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 469 E-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred H-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 3 56677766655667899999999999988764 234567888888888889999999999988765443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=134.72 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCChh-HHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPY-KAF 290 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~n~li~~~~~~g~~~-~A~ 290 (827)
.+|..+|+...... ..+..+...+..+|...+++++|+++|+.+.+..+ ..+...|.+.+--+-+.-... -|.
T Consensus 336 ~~A~~~~~klp~h~----~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 336 REALNLFEKLPSHH----YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHhhHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45555555533332 33334455555555555555555555555544321 123444444443321110000 011
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 370 (827)
++.+.+ +-.+.||.++.++|.-+++.+.|++.|+++.+.+ +-...+|+.+..-+.....+|.|...|+..+...
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 111111 1134455555555555555555555555555433 2234455555555555555555555555544221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450 (827)
Q Consensus 371 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 450 (827)
..+-.+|--+.-.|.|.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|++++++......+ |+..---
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 111222333444455555555555555554443322 3344444444444555555555555554433222 2222222
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.+..+...+++++|+..++++.+ +.|+.. .+..+...|-+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33334444444555555544444 333332 3333333444444444444444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-10 Score=125.12 Aligned_cols=284 Identities=11% Similarity=-0.004 Sum_probs=194.9
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF--ASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~ 360 (827)
.|++++|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887777655532111 2233333444577888888888888887643 443322 23366777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHH
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-------GLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
..++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888765 446677788888888888888888888888887654322 12233333333444455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+..+..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 555432 2346777788888888888888888888888773 445422 12334445588888888888888776665
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
......+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888888888853 57777777788888888888888888887644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=142.49 Aligned_cols=261 Identities=16% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
.+...+.+.|++++|++++++..... . +.+...|..+.......+++++|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~---~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP---PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 33555566666666666664332221 1 444455555555555666666666666666654433 44455555555
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A 359 (827)
...+++++|.+++.+.-+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45566666666665544332 344455556666666666666666666655322 234555566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
++.+++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...|++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666666543 2235556666666666666666666666555543 223344556666666666666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
.. .|......+.+++.+.|+.++|.++..+..
T Consensus 244 ~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ST-T-HHHHHHHHHHHT----------------
T ss_pred cc-cccccccccccccccccccccccccccccc
Confidence 22 255556666666666666666666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-09 Score=111.38 Aligned_cols=360 Identities=11% Similarity=0.058 Sum_probs=250.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH-HHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT-QSY 273 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 273 (827)
.|...+......+.+.|..+.|.+.|...+..- |-.-.+|..|..... +.+.+.. +...++..+. ..=
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit---~~e~~~~----l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELIT---DIEILSI----LVVGLPSDMHWMKK 230 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhc---hHHHHHH----HHhcCcccchHHHH
Confidence 445555556666778899999999999988765 555555655544433 2232222 2221111111 111
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMG 351 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~ 351 (827)
-.+..++....+.+++++-.+.....|.+-+...-+....+.-...++++|..+|+++.+.+. -.|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666678888888888888888775655555555566678899999999999988751 135677777664332
Q ss_pred hcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 352 KAGRLDT-SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 352 ~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
...++.- |..++ .+- +--..|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.
T Consensus 311 ~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222211 11111 111 223456777888888889999999999999887544 5677888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
+-++...+-... |-..|-.|.++|.-.+...-|+-.|++... ++| |...|.+|..+|.+.++.++|++.|......
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999886543 888999999999999999999999999988 566 5679999999999999999999999999987
Q ss_pred CCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 510 GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS----SGIRTNNF--IVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 510 g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
|-.....+..|...|-+.++.++|...|++-++ .|...+.. ...-|..-+.+.+++++|......
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 766566888999999999999999999987765 23332222 111233345567777777654433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-10 Score=127.14 Aligned_cols=299 Identities=8% Similarity=-0.023 Sum_probs=189.8
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 200 YVMLFDVL--NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 200 ~~~li~~l--~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
+..+.+++ ...|+++.|.+.+.+..+.. +.....+-....++.+.|+.+.|.+.+.+..+..+.++....-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 33344444 46888999999888876654 4445555566777888889999999988887654333333444456
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---Hhc
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA-SLVDSM---GKA 353 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~---~~~ 353 (827)
..+...|++++|.+.++++.+... -+...+..+...+.+.|++++|.+.+..+.+.++. +...+. ....++ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 777788889999999888888652 26667888888888899999999988888888643 333231 111111 222
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH--HHhcCChh
Q 003353 354 GRLDTSMKVYMEMQGCGH---RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-TMIIES--HAKSGKLD 427 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~--~~~~g~~~ 427 (827)
+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+... |.... ..++.. ....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChH
Confidence 223333334444443321 13667777788888888888888888888877543 32210 012222 23345666
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 428 IAMSIFTDMERAGFLPTP--STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~ 505 (827)
.+.+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777666654211 33 445567777777777777777777433322467777777777777777777777777776
Q ss_pred HH
Q 003353 506 MK 507 (827)
Q Consensus 506 m~ 507 (827)
..
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=141.45 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..++...++++.|+++++........+.+...|..+.......+++++|.+.++++...+ +.+...+..++.. ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc-cc
Confidence 333344455555555553322211002233333333344444455555555555554443 3334444444444 34
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC-ccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
.+++++|.+++....+.. ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555544433321 233344444444555555555555555443221 22334444444445555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.+++..+.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+...
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 555555443 2234444445555555555555444444444322 22333444445555555555555555555444321
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
.|..+...+.+++...|+.++|.++.++.
T Consensus 246 -~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 -DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -T-HHHHHHHHHHHT---------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 14444444555555555555555544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-11 Score=131.06 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=200.5
Q ss_pred ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN--FRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
+..+|+..|...... +.-+......+.++|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 457788888774443 33234556667778888888888888888887653 113456677766544321 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 363 Y-MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 363 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
+ +.+.+.. +-...+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222222 345678888888888888888888888888775322 567788777777788888888888887776421
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHH
Q 003353 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520 (827)
Q Consensus 442 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~l 520 (827)
. +-..|..+...|.+.++++.|+-.|+...+ +.|. .+....+...+.+.|+.|+|+++++++...+++....-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 1 233444566778888888888888888887 5564 44555566677788888888888888888777777666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003353 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNN-FIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 584 (827)
+..+...+++++|+..++++.+ +.|+. .++..+...|.+.|+.+.|+.-|.-+.+.++++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 7777788888888888888875 45554 45666667788888888888888888887777554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-10 Score=119.14 Aligned_cols=399 Identities=13% Similarity=0.031 Sum_probs=241.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPG-DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~-~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
..+.+++|+++|.|+... .|+ +.-|.....+|...|++++..+--.+.++.. |.-+.++..-..++-..|++
T Consensus 127 ~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~----P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN----PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC----cHHHHHHHHHHHHHHhhccH
Confidence 557899999999999996 466 7888889999999999999999999998887 77788888899999999999
Q ss_pred HHHHHHHHHh-HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-CC--ccCCHHHHHHHHHHHHHc--------C
Q 003353 252 EMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GE--CSLDGSTYELMIPSLAKS--------G 319 (827)
Q Consensus 252 ~~A~~~~~~m-~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-~g--~~pd~~t~~~li~~~~~~--------g 319 (827)
++|..=..-. +-.|+. |..+--.+=+.+ -..|....++-.+ ++ +-|......+....+-.. +
T Consensus 200 ~eal~D~tv~ci~~~F~-n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQ-NASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHhhhHHHHhhhcc-cchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 8885322111 111111 111111111111 1112222222222 22 334544444444333110 0
Q ss_pred C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC---C------HHHHHHHH
Q 003353 320 R-----LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG---CGHRP---S------APMYVSLI 382 (827)
Q Consensus 320 ~-----~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p---~------~~~~~~li 382 (827)
+ ..++.+.+..-.. . .+..|...+.+-.. ..... | ..+.....
T Consensus 274 ~ksDa~l~~~l~~l~~~~~-------e-------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLE-------E-------------GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccchhhHHHHHHHHHhhCc-------h-------------hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0 1111111111110 1 12222222221110 00000 1 11222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003353 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 462 (827)
..+.-.|+.-.|.+-|+..+.....++. .|--+..+|....+.++.++.|++..+.+.. +..+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 2334467778888888888776554433 2666666788888888888888888776544 5566766777777778888
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 463 SAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 463 ~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+|..=|++.++ +.|. ...|..+.-+..+.+++++++..|++.++.-+.....++-....+..++++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88888888877 4554 34666666666678888888888888888766666677777777888888888888888877
Q ss_pred hCCCC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 542 SSGIR-----TN--NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 542 ~~~~~-----p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
+.... .+ ..+-..++. +.-.+++..|++++++..+.+++ ....|.+|...-.+.|+.++|.++|+..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 53211 12 112222221 11237888888888888887777 5567778888888888888888888763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-09 Score=108.94 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=190.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH------HHHHHHHHHHHHc
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT------QSYNVLMTLFLNK 283 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~n~li~~~~~~ 283 (827)
+.+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 457788888888888765 677777788888888888888888888877764 442 2344556667778
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A 359 (827)
|-++.|.++|..+.+.|.. -......|+..|-...+|++|.++-+++.+.+-.+.. ..|.-|...+....+.+.|
T Consensus 121 Gl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888888765322 3456677788888888888888888877776533321 2344555555566778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
..++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888887664 33444555566777788888888888888887765545566777888888888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---RKLVDVAAKILLEMKT 508 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~ 508 (827)
...++ .-..+-..-....-.+.|...+.+-+. -+|+...+..+|..-.. -|...+...+++.|+.
T Consensus 279 ~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 NTGAD--AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333 223333333334445555555544444 26888888888775432 3344555555555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-09 Score=111.38 Aligned_cols=454 Identities=11% Similarity=0.051 Sum_probs=287.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYN 274 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n 274 (827)
+..+...|..+....+|+..++-+++... -|+.- .--.+...+.+...+.+|++.|+-..+.-+..+ +...|
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkm---f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKM---FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccc---cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33455666677888999999998887653 34332 223456678888899999999987776533333 23455
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHHH
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR------------PSFNI 342 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~t 342 (827)
.+.-.+.+.|+++.|+..|+...+. .||..+--.|+-++.--|+-++..+.|.+|+..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5556678899999999999998774 488887666666777789999999999999865322 23333
Q ss_pred HHHHH-----HHHHhcCCHHHHHHHH---HHHHhCCCCCCHHH---H----------H--------HHHHHHHHcCCHHH
Q 003353 343 FASLV-----DSMGKAGRLDTSMKVY---MEMQGCGHRPSAPM---Y----------V--------SLIESYAKAGKLDT 393 (827)
Q Consensus 343 ~~~li-----~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~ 393 (827)
.+..| .-.-+.+ -..|++.. .+++.--+.||-.. | . .-..-|.++|+++.
T Consensus 359 l~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 32222 1111111 11222222 22222122232110 0 0 11234678999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAK--SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
|+++++-..+..-+.-...-|.|-..+.- -.++..|.+.-+...... .-+......-.+.-..+|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999998876433223333333333322 346777777766655321 113333333333445689999999999999
Q ss_pred HHCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 472 TSAGLRPGLSTYTALL---TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 472 ~~~g~~pd~~t~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
+.. |...-.+|. -.+...|++++|++.|-++...-.........+...|....+...|++++-+.... ++.|
T Consensus 517 l~n----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 517 LNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 874 333333332 25678999999999998877643334457778888999999999999999777632 4456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchh--HHHhhhcc
Q 003353 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH--AFLCGLFT 626 (827)
Q Consensus 549 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~--~~~~~l~~ 626 (827)
+.+.+.|...|-+.|+-..|.+..-.--+- +.-|..|..=|...|...+-.+++...|+......|... ..+...+.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 889999999999999999998877654332 444777777777788888889999999998776655443 22333333
Q ss_pred CCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCCh
Q 003353 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672 (827)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~ 672 (827)
...+..|.+.+..+...++ .+.+.++.- -|+.+....|..
T Consensus 671 rrsgnyqka~d~yk~~hrk----fpedldclk--flvri~~dlgl~ 710 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK----FPEDLDCLK--FLVRIAGDLGLK 710 (840)
T ss_pred HhcccHHHHHHHHHHHHHh----CccchHHHH--HHHHHhccccch
Confidence 3334445454444443332 333333332 477777777743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=107.52 Aligned_cols=293 Identities=15% Similarity=0.147 Sum_probs=222.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
..+.+.|++.|-.+.+.+ +.+.++--++.+.+-+.|..|.|+++++.+.....-....-..+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467888999999999865 455667778999999999999999999999876421111123456678888999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYELMIPSLAKSGRLDAAIKLFQ 329 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~li~~~~~~g~~~~A~~~~~ 329 (827)
|+.+|..+.+.+. .-......|+..|-+..+|++|+++-+++...+-.+..+ -|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987543 245677889999999999999999999998876544332 45566666677789999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 330 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 999876 4445555667888999999999999999999876444456788899999999999999999999988654444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHC
Q 003353 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS---GQVDSAMKLYNSMTSA 474 (827)
Q Consensus 410 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~l~~~m~~~ 474 (827)
. -..+-+.-....-.+.|...+.+-..+ .|+...+..+|+.-... |...+-+.+++.|...
T Consensus 284 ~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 A--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred H--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 333334333444455666655554443 48999999999876543 3455666677777653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-09 Score=106.79 Aligned_cols=286 Identities=12% Similarity=0.035 Sum_probs=222.2
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.++.+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68899999998887776544 34566666777788899999999999988764356677777888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-------GLFTMIIESHAKSGKLDIAMSIFTD 435 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~~~ 435 (827)
.+++.+.+ +.+.........+|.+.|++.+...++..|.+.|.-.|. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 98888876 456778888899999999999999999999998876553 4566666666666666665556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 436 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
...+ .+-++..-.+++.-+.++|+.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..++-.+..+....
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5542 33466677788888899999999999999998887766622 223566778888888888877776555446
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+.++|.+..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 788888899999999999999997764 568888999999999999999999988887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-08 Score=106.95 Aligned_cols=436 Identities=15% Similarity=0.110 Sum_probs=289.6
Q ss_pred HHHhhhCCCCCCHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 152 ETQLDKLQFVPKMV-HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230 (827)
Q Consensus 152 ~~~l~~~~~~p~~~-~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~ 230 (827)
...|.+.+-.++.. .-+-.|+++|+-++|....+...+.+ ..+..+|..+.-.+-..+++++|++.|...+..+
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--- 105 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--- 105 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---
Confidence 33444444444333 34667889999999999999988865 5678899999988888999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC-ccCCHHHHH
Q 003353 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYE 309 (827)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~ 309 (827)
+.|...|.-+.-.-++.|+++-....-..+.+..+. ....|..+..++.-.|++..|..+.++..+.. -.|+...|.
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 899999999888888999999888888888775443 66789999999999999999999999997764 246666654
Q ss_pred HHHH------HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 003353 310 LMIP------SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL-I 382 (827)
Q Consensus 310 ~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i 382 (827)
-... ...+.|..++|.+.+..-... +......-.+-.+.+.+.+++++|..++..++.. .||..-|.-. .
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 4332 346678888888777654432 2222233345567888999999999999999986 4676665544 4
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003353 383 ESYAKAGKLDTAL-RLWDEMRIAGF---RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458 (827)
Q Consensus 383 ~~~~~~g~~~~A~-~l~~~m~~~g~---~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 458 (827)
.++.+-.+.-+++ .+|....+.-. .|-....+. .....-.+..-+++..+.++|+++ ++..+...|-.-
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhch
Confidence 4554444544555 66666544311 111111111 111222333445566666777654 233333333222
Q ss_pred CCHhHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 459 GQVDSAMKLYNSMT----SAG----------LRPGLS--TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 459 g~~~~A~~l~~~m~----~~g----------~~pd~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
...+-..++.-.+. ..| -.|... |+-.++..+-+.|+++.|..+++.++.+.+.....|..-..
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 21111111111111 111 145554 44456778889999999999999999865443345556667
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----------HH
Q 003353 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV----------LA 592 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l----------l~ 592 (827)
++...|.+++|..++++..+.+. +|..+=..-..-..++.+.++|.++.....+.|. +.+-.-+- ..
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhH
Confidence 89999999999999999987663 3444333334445688999999999999887775 33322222 24
Q ss_pred HHHhcCCHHHHHHHH
Q 003353 593 HLVRCQDEQNERHLM 607 (827)
Q Consensus 593 a~~~~g~~~~a~~l~ 607 (827)
+|.+.|++..|.+-|
T Consensus 491 ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 491 AYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777776665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-08 Score=108.36 Aligned_cols=454 Identities=14% Similarity=0.036 Sum_probs=304.8
Q ss_pred CCccHHHHhhhCCCCC-CHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH--
Q 003353 147 WGPELETQLDKLQFVP-KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-- 223 (827)
Q Consensus 147 ~~~~~~~~l~~~~~~p-~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m-- 223 (827)
.+..+.+.+..++..| |.+-+.+++...++++.|..+...-.- ...|..+.......+.+..++++|..++...
T Consensus 34 ~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~ 110 (611)
T KOG1173|consen 34 TALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHV 110 (611)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3344555555555555 345578889888888877666553322 2456777788888899999999999998832
Q ss_pred --HHcCC--CC----CCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 224 --VHDSS--KN----GISLF-----------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 224 --~~~~~--~~----~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
..... ++ ...+. ..+-.-...|......++|...|.+... .|+..+.++...-..
T Consensus 111 ~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~-- 184 (611)
T KOG1173|consen 111 ETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA-- 184 (611)
T ss_pred hhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--
Confidence 11100 00 00000 0111112234445567777777777665 455555554433221
Q ss_pred ChhHHHHHHHHhHhCCc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 285 LPYKAFEIYESMEKGEC----SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
..-.+.+.|+.+..... .-+......+.....-...-++....-.+..-.+..-+........+-+...+++.+..
T Consensus 185 ~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ 264 (611)
T KOG1173|consen 185 HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECL 264 (611)
T ss_pred HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHH
Confidence 22233333333332111 11222222222221111111111111111111233455566667777888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
++.++..+.. ++....+..-|.++...|+..+-..+=.+|.+.-+ -...+|-++.--|...|+..+|++.|.+....+
T Consensus 265 kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 265 KITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred HHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 9999998765 56677777778899999998888888888887643 357889888888888999999999999876542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 519 (827)
.. =...|-.....|+-.|..++|+..|....+. -|.. .-+--+.--|.+.++++.|.+.|.++....+......+-
T Consensus 343 ~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 343 PT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred cc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 22 2457888999999999999999999888762 2221 112233446788999999999999999876666667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 593 (827)
+.......+.+.+|..+|+..++. ....|..+++.|..+|.+.+++++|+..+++.+...++ |..+++++.-.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~i 498 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYI 498 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHH
Confidence 888888889999999999988731 12247889999999999999999999999999988777 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhccC
Q 003353 594 LVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 594 ~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
|...|+.+.|...+.+....+|
T Consensus 499 y~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999988776655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-08 Score=103.76 Aligned_cols=295 Identities=13% Similarity=0.093 Sum_probs=207.9
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 202 MLFDVLN--ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 202 ~li~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.+..++. -.|+|..|+++..+-.+.+ +.....|..-+.+--..|+.+.|-..+.+..+....++...+-+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3444444 3788899988888876665 555667777777778888888888888888876445667777777788
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHh
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGK 352 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~ 352 (827)
....|+++.|..-.+++.+.+.. +........++|.+.|++.+...++..+.+.|.-.+. .+|..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888776533 6677788888888889999988888888888754443 366666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.+..+.-...+++.... .+.+...-.+++.-+.+.|+.++|.++..+..+.+..|... . .-.+.+-++.+.-.+.
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKA 316 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHH
Confidence 66666555566555433 23445555666777778888888888888877776655411 1 1233455666555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.+.-.+.. +-++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 317 ~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55544332 12446677777888888888888888887766 5677888888888888888888888887776643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-08 Score=106.52 Aligned_cols=417 Identities=11% Similarity=0.034 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+-...+-+.++|.+++|++.|.+.+... +..+.-|.....+|...|+|++..+--.+..+..+. -+..++.-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHH
Confidence 34456677889999999999999998874 333788889999999999999998888877775432 3445666666
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-cC--CCCCHHHHHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ--------EMKE-RN--FRPSFNIFASLV 347 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~p~~~t~~~li 347 (827)
++-+.|++++|+.= .|..+++.++....-.-.+.+++. +-.+ .+ +-|+.....+..
T Consensus 192 A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 77777777766432 233333333333222222222222 2122 22 223333322222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc---CCCCC---------HHHHH
Q 003353 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK-AGKLDTALRLWDEMRIA---GFRPN---------FGLFT 414 (827)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~---g~~pd---------~~t~~ 414 (827)
..+-.. +. ..+...+-+.|...-..+=..+.. ...+..|...+.+-... ....+ ..+..
T Consensus 259 ~sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 221100 00 000000000111111111111111 01233333333222110 00011 11122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKR 493 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~ 493 (827)
....-+.-.|+.-.|.+-|+..++....++ ..|--+..+|.+..+.++....|+...+ +.| |..+|..-.+.+.-.
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHH
Confidence 222223446777777777777776544322 2265666677777777777777777776 333 345666666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
+++++|..-|++.+...+.....+-.+.-+..+.++++++...|++..++ ++.-...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 77777777777777755444445555666666777777777777777653 33335566666677777777777777777
Q ss_pred HHHHCCCCCCHH-----HH--HHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhcc
Q 003353 574 TYVESAAKVDLV-----LY--TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI 646 (827)
Q Consensus 574 ~m~~~g~~pd~~-----t~--~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (827)
..++..+.-+.+ ++ -+++-.-. .+++..|..++++..
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~----------------------------------- 530 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAI----------------------------------- 530 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHH-----------------------------------
Confidence 776643331111 11 11111111 133333333332222
Q ss_pred ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 647 DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 647 ~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
+.+|.++ ..|-+|..+....|++++|.++|+++..
T Consensus 531 --e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 531 --ELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2333333 3356899999999999999999988743
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-09 Score=121.70 Aligned_cols=269 Identities=13% Similarity=0.053 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHhH
Q 003353 232 ISLFSAYNRVIQYLAK-----ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN---------KGLPYKAFEIYESME 297 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~---------~g~~~~A~~~~~~m~ 297 (827)
+.+...|...+.+-.. .+.+++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554322 13456777777777776543 45566655554432 233677888887777
Q ss_pred hCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003353 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377 (827)
Q Consensus 298 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 377 (827)
+... -+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 6532 256667777777777788888888888877765 455667777777788888888888888887765422 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
+..++..+...|++++|+..+++..+....-+...+..+..++...|+.++|...+.++..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3334445566777888888887776543222344556666777778888888888777654311 133444555556666
Q ss_pred cCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 458 SGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
.| ++|...++.+.+. ...+....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 66 4666666666542 122322222222 34445555555544 6666543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-07 Score=96.56 Aligned_cols=494 Identities=14% Similarity=0.155 Sum_probs=310.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..+.+-..++.......|+.+++.-+...-...|...+......+-.+-+..++++.++.. +..-+--|..++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-------P~~~eeyie~L~ 180 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-------PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-------HHHHHHHHHHHH
Confidence 4566667777777888888888864333334588888888888999999999999998664 444667788899
Q ss_pred HcCCHHHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCChh---HHHHHHHHhHhCCccCCH--HHHHHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSD------CKIDTQSYNVLMTLFLNKGLPY---KAFEIYESMEKGECSLDG--STYELMIPSL 315 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~--~t~~~li~~~ 315 (827)
+.+++++|.+.+....... .+-+-..|+-+-+..+++-+.- ...++++.+... -+|. ..|++|.+-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 9999999999988876421 1235567777777766653322 233445555432 2454 4789999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA----------------G------RLDTSMKVYMEMQGCGH-- 371 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~g~-- 371 (827)
.+.|.++.|..+|++....- .++.-|+.+-++|+.- | +++-.+.-|+.+.....
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999999887653 2333344444554431 1 12233334444332210
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 372 ---------RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP------NFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 372 ---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------d~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
+.++..|..-+.. ..|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 2244455544433 356777778888887764 222 2456788899999999999999999998
Q ss_pred HHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHHHhcCCH
Q 003353 437 ERAGFLPT---PSTYSCLLEMHASSGQVDSAMKLYNSMTSAG----------LRP-------GLSTYTALLTLLAKRKLV 496 (827)
Q Consensus 437 ~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------d~~t~~~li~~~~~~g~~ 496 (827)
.+-..+-- ..+|..-..+=.+..+++.|+++.++....- -.| ....|...++.-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87544311 3456555666677888999999988776411 111 223455566666678899
Q ss_pred HHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHH---cCCHHHHHHHH
Q 003353 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF-IVRQLFESCMK---NALYESAKPLL 572 (827)
Q Consensus 497 ~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---~g~~~~A~~~~ 572 (827)
+....+++.+++..+-.....-+....+-...-++++.+++++-+..=-.|+.. +|+..+.-+.+ .-..+.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998877655443334444556667889999888665433334433 56655555443 23689999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCchhHH-Hh-------hhccCCccccchhHHHHH
Q 003353 573 ETYVESAAKVDLVLYTSVLAHLVR----CQDEQNERHLMAILSATKHKAHAF-LC-------GLFTGPEQRKQPVLSFVR 640 (827)
Q Consensus 573 ~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~l~~~~~~~~~~-~~-------~l~~~~~~~~~~~~~~~~ 640 (827)
++.++ |..|...-+--|+ |++ .|-...|..++++....-+....+ +. ....|... ..+..+.+.
T Consensus 574 EqaL~-~Cpp~~aKtiyLl--YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~-TR~iYekaI 649 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLL--YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR-TREIYEKAI 649 (835)
T ss_pred HHHHh-cCCHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHH
Confidence 99999 5666554333333 332 355666777777765544443322 11 11112111 112222222
Q ss_pred HHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 003353 641 EFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYEN 685 (827)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~ 685 (827)
+ .+ +.+-...++=-..++=++.|.+++|+.++....+-
T Consensus 650 e---~L----p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 650 E---SL----PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred H---hC----ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 2 22 11112233334457788999999999998766443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-09 Score=108.36 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....+..+...+...|++++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 34567777777888888888888888877665 666777777788888888888888888877765543 5566777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCcc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
+...+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 777777778888888877777654211 223455556666667777777777777766654 334455666666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 355 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777666666542 33445555556666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=124.07 Aligned_cols=217 Identities=12% Similarity=-0.022 Sum_probs=130.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN---------ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~---------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+.++|+.+|+.+.+.+ +.+...|..+..++. ..+++++|...+++.++.. |.+..++..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld----P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD----HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHH
Confidence 3456777777777764 334555555554433 2234677777777777766 667777777777777
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|...|++..+.++. +...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|.+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777777766543 5566666777777777777777777777664322 12222333444555667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
.++++.+...+.+...+..+..++...|++++|...+.++.... ..+....+.+...|+..| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77776654322234445566666667777777777776655431 112334444445555555 355555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-09 Score=104.79 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
....+..+...|.+.|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 3455666666666677777777777666654322 455666666666666666666666666655432 23445555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 392 (827)
.+...|++++|.+.++++.+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666666654321 1223344445555555666666666665555432 223444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 393 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
+|...+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555543 12233444444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-06 Score=89.63 Aligned_cols=497 Identities=13% Similarity=0.166 Sum_probs=297.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS---KNGISLFSAYNRVIQY 244 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~---~~~~~~~~~~~~li~~ 244 (827)
+.-+...+-++-++.++++..+- ++..-+--|..+++.++.++|.+.+...+.... +.++.+...|.-+-+.
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 33344445556677777766663 333456667888999999999999998876432 1236677788888888
Q ss_pred HHHcCCHHHH---HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc---
Q 003353 245 LAKADKLEMS---YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS--- 318 (827)
Q Consensus 245 ~~~~g~~~~A---~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~--- 318 (827)
.++.-+.-.. ..+++.+...-...=...|++|.+-|.+.|.+++|.++|++.++.- .++.-|+.+.++|+.-
T Consensus 220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHH
Confidence 7776554333 3334444332111223679999999999999999999999987742 2344455555555321
Q ss_pred -------------C------CHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 319 -------------G------RLDAAIKLFQEMKERN-----------FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 319 -------------g------~~~~A~~~~~~m~~~g-----------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
| +++-...-|+.+..+. -+-++..|..-+..+ .|+..+-...|.++.+
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHH
Confidence 1 1233344444444332 123344555444433 5667777788887775
Q ss_pred CCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 369 CGHRP------SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN---FGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 369 ~g~~p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
. +.| -...|..+...|-..|+++.|..+|++..+...+-- ..+|-.-..+-.+..+++.|.++.++....
T Consensus 376 ~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 376 T-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred c-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 3 122 234688889999999999999999999887543211 234444445555667788888888776532
Q ss_pred C----------CCC-------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 440 G----------FLP-------TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 440 g----------~~p-------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l 502 (827)
. -.| +...|...++.--..|-++....+|+++++..+. ++........-+....-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 111 3445666677777788999999999999985543 222222223344567778999999
Q ss_pred HHHHHHCCCCchH--hHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 003353 503 LLEMKTMGYSVDV--SASDVLMVYIK---DGSVDHALRWLRFMGSSGIRTNNFIVRQLFES--CMKNALYESAKPLLETY 575 (827)
Q Consensus 503 ~~~m~~~g~~~~~--~~~~li~~y~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~m 575 (827)
+++-+..-..|.+ .|+..+.-+.+ .-+++.|..+|++.++ |++|...-+-.|+-+ =.+.|....|++++++.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9887776556664 56665554443 3468999999999998 777664422222111 22578899999999996
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchh-HHHhhhccCCccccchhHHHHHHHhhcccccccc
Q 003353 576 VESAAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH-AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652 (827)
Q Consensus 576 ~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (827)
.. ++++. ...|+..|.--...=....-+.++++.-..-+..+ --+|--+... +.+-+-...++..+.--..=.+|
T Consensus 613 t~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl-EtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 613 TS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL-ETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH-hhhhhhHHHHHHHHHhhhhcCCC
Confidence 54 34433 33566555432222122233444444332222211 1123222211 11111122333332211112356
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHH
Q 003353 653 GAARYFVNVLLNYLVLMGQINRARCV 678 (827)
Q Consensus 653 ~~~~~~~n~Li~~l~k~G~~~~A~~v 678 (827)
....-+|++.=+.=.+-|+-+.-.+.
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 66778899999999999996555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-06 Score=93.69 Aligned_cols=419 Identities=12% Similarity=0.118 Sum_probs=280.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
.+++...+++.+.+.+.. +--.++.....-.+...|+-++|.......++.. ..+.+.|..+.-.+....++++
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC----cccchhHHHHHHHHhhhhhHHH
Confidence 467777888888888854 4455677777777788999999999988887765 7888999999999999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
|+++|......+.. |...|.-+--.-++.++++...+.-.+..+.. +-....|.....++--.|+...|..++++..+
T Consensus 94 aiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 94 AIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987754 77888877777778888888888888877652 22456788888888889999999999999987
Q ss_pred cC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 334 RN-FRPSFNIFASLV------DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 334 ~g-~~p~~~t~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.. -.|+...+.... ....+.|..++|.+.+..-...- .-....-.+....+.+.+++++|..++..+....
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 65 246666554433 33456788888888776654321 1122233456677889999999999999999864
Q ss_pred CCCHHHHHHHH-HHHHhcCChhHHH-HHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHCCCCCCH
Q 003353 407 RPNFGLFTMII-ESHAKSGKLDIAM-SIFTDMERAGF---LPTPSTYSCLLEMHASSGQ-VDSAMKLYNSMTSAGLRPGL 480 (827)
Q Consensus 407 ~pd~~t~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~ 480 (827)
||..-|.... .++.+-.+.-++. .+|....+.-. .|--...+ .....+ .+..-+++..+.+.|+.+-
T Consensus 250 -Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-----vl~~eel~~~vdkyL~~~l~Kg~p~v- 322 (700)
T KOG1156|consen 250 -PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-----VLNGEELKEIVDKYLRPLLSKGVPSV- 322 (700)
T ss_pred -chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-----HhCcchhHHHHHHHHHHHhhcCCCch-
Confidence 6666655544 4444443444444 56666554311 11111111 111122 2333455666777776643
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC----------Cch-H--hHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMK----TMGY----------SVD-V--SASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~----------~~~-~--~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
+..+.+.|-.-...+-.+++.-.+. ..|. +|. . ++.-++..|-+.|+++.|...++....+
T Consensus 323 --f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 323 --FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred --hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3333333322222221112211111 1111 222 1 3456778899999999999999998853
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 544 GIRTNNF-IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 544 ~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
.|+.+ .|..=...+...|++++|..++++..+.+. +|...=+.-.....+.++.++|..+.......+
T Consensus 401 --TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 401 --TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred --CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 45533 444444668889999999999999987654 477666677778888999999988776655433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-07 Score=91.14 Aligned_cols=447 Identities=12% Similarity=0.069 Sum_probs=270.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (827)
.|+.-|+.+++....... .....+-..+..++...|++++|...+.-+.... .++...+..|.-.+.-.|.+.+|
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHH
Confidence 466667777776554331 1112233345577788999999999999888765 66677777787788888999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 255 ~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+-.+..+ +.-.-..|....-+.|+-++-..+.+.+... ..---+|.+..-..-.+.+|.+++.+....
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888766543 3344444555555667666666555555432 122223444444445788999999998875
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 335 NFRPSFNIFASL-VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413 (827)
Q Consensus 335 g~~p~~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 413 (827)
+ |+....|.- .-+|.+..-++-+.++++-..+.- +.++..-|.......+.=.-..|+.-..++.+.+-.. |
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 4 444444443 346778888888888888776642 3455666666655555333233343344444432211 1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 414 TMIIESHAKS-----GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 414 ~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
-.+.-+++. ..-+.|.+++-.+.+. -+..--.|+--|.+.+++.+|..+.+++.- ..|-......+..
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 123333333 2446777777666653 222333455568899999999998877643 3343333333332
Q ss_pred HH-----HhcCCHHHHHHHHHHHHHCCCCchH--hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003353 489 LL-----AKRKLVDVAAKILLEMKTMGYSVDV--SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561 (827)
Q Consensus 489 ~~-----~~~g~~~~A~~l~~~m~~~g~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 561 (827)
+- .......-|.+.|+-.-+.+..-|. .-.++...+.-..++++.+..+.....-=..-|...+ .+.++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 21 1122455566666666566655552 2345566666667788888888777653333344444 46688999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHH
Q 003353 562 NALYESAKPLLETYVESAAKVDLVLYTS-VLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVR 640 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 640 (827)
.|.+.+|.++|-+.....++ |..+|.+ |..+|.+++..+-|-.++-.+...+ .. -
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~--------------------f 461 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ER--------------------F 461 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hH--------------------H
Confidence 99999999999887665556 5556655 4578889998888766653322100 00 0
Q ss_pred HHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCc
Q 003353 641 EFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKA 691 (827)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~ 691 (827)
...-...+-+.++|++=-|.+.|+......|.|..
T Consensus 462 ----------------sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 462 ----------------SLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 01113345677788877777777777666766653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-07 Score=104.43 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 337 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
.|+..+|..++++-..+|+++.|..++.+|.+.|++.+..-|-.++-+ .++...+..+++-|.+.|+.|+..|+..-
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 477788888888888888888888888888888877777666666554 77777788888888888888888888776
Q ss_pred HHHHHhcCC
Q 003353 417 IESHAKSGK 425 (827)
Q Consensus 417 i~~~~~~g~ 425 (827)
+..+.++|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666665444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-07 Score=92.46 Aligned_cols=419 Identities=10% Similarity=0.045 Sum_probs=268.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+...-++||+++|+..+..+.... .++...+..+.....-.|.+.+|.++-.+. +.++-.-..|...--+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka--------~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKA--------PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHH
Confidence 445558899999999999888865 567777888888888889999999887665 3344444555566667
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH-HHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI-PSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li-~~~~~~g~~~~A~~ 326 (827)
.++-++-...-+.+.+ ...---+|....-..-.+.+|++++.+....+ |+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHH
Confidence 7777766666555543 12223334444334456899999999998753 5555555443 46678888899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA-----GKLDTALRLWDEM 401 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m 401 (827)
+++--.+. ++.+...-|.......+.=+-..|+.-..++.+.+-.. | -.+.-+++. ..-+.|++++--+
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 88877764 35555666666555555433334444445554433111 1 123334443 3457788888776
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHHcCCHhHHHHHHHHHHHCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE-----MHASSGQVDSAMKLYNSMTSAGL 476 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-----~~~~~g~~~~A~~l~~~m~~~g~ 476 (827)
.+. .|. .--.|+--|.+.+++.+|..+.+++.-. .|-......++. -........-|.+.|+-.-+.+.
T Consensus 281 ~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 281 MKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred Hhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 653 232 2233555688999999999888765431 222222222221 11122235556666666555554
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH-
Q 003353 477 RPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ- 554 (827)
Q Consensus 477 ~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 554 (827)
.-|.. --.++.+++.-..++++.+.++..+...-...|..-..+..+++..|++.+|.++|-.+....++ |..+|.+
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 43322 23345555666678899999888888876667777778999999999999999999888755555 4555544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhccCchhH
Q 003353 555 LFESCMKNALYESAKPLLETYVESAAKVDLVL-YTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619 (827)
Q Consensus 555 ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~ 619 (827)
|..+|.++|.++.|..++-++ +-..+..+ .-.+.+-|.+++++--|.+.|..+...+|.+..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 556678999999888776554 22223333 334456788888888888888887777665443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-07 Score=100.47 Aligned_cols=280 Identities=12% Similarity=0.102 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 348 (827)
++...-...+-+...+++.+..++++...+. .+++...+..-|.++...|+..+-..+=.++.+.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 3344444444445556666666666666554 23344444444555666666555555555555542 444556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCh
Q 003353 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA--GFRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~ 426 (827)
-|.-.|+..+|.+.|.+....+ +.-...|-.....|+-.|..|+|+..+...-+. |.. -+..| +.--|.+.+++
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccH
Confidence 6666666666666666555432 112345666666666666666666665554432 111 01112 22345556666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHHHH
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GL---R-PGLSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-pd~~t~~~li~~~~~~g~~~~A~ 500 (827)
+.|.+.|.+..... +.|+...+-+.-...+.+.+.+|..+|+..+.. .+ . --..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 66666666555432 224555555555555556666666666555421 00 0 12234555555666666666666
Q ss_pred HHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003353 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557 (827)
Q Consensus 501 ~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 557 (827)
..+++.+...++...++.++...|...|+++.|.+.|.+.+ .+.|++.+...++.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 66666666555544555666666666666666666666555 34555555544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-11 Score=87.65 Aligned_cols=50 Identities=28% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 268 p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=105.57 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
+.+.++|.+.|.+.+|++.++...+. .|-+.||-.|-.+|.+..+++.|+.++.+-.+.- +-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44555566666666666665555544 3444455555556666666666666665555431 11222223344555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~ 503 (827)
++.++|.++|+...+... .++....++..+|.-.++.+.|+..|++++.-|+. +...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666666666555322 24445555555566666666666666666665554 4555555555555666666666666
Q ss_pred HHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 504 LEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 504 ~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
+.+...-..|+ ..|+++.......|++.-|.+.|+-.+..+.. +...++.|.---.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66655544444 25666666666666666666666666544322 3345555544455666666666666665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=86.57 Aligned_cols=49 Identities=35% Similarity=0.692 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 373 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-09 Score=103.76 Aligned_cols=225 Identities=11% Similarity=0.084 Sum_probs=99.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
++.+.++|.+.+|.+.|+....+ .|-+++|..+-.+|.+-.+.+.|+.++.+-+... |.++....-+...+-.
T Consensus 230 gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHHHH
Confidence 33344444444444444444443 2334444444444555445555555444444433 3333333444444444
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.++.++|.++|+...+.... ++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|.++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 44445555555444443321 3334444444444444444555555554444443 444444444444444444444444
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 328 FQEMKERNFRPS--FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 328 ~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|++....--.|+ ..+|..+.......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..+++...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 444443221121 1234444444444444444444444444332 1233344444444444444444444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-06 Score=95.43 Aligned_cols=406 Identities=13% Similarity=0.038 Sum_probs=265.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 193 ~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
+.-+...|..+.-++...|+++.+.+.|++....- ......|+.+...|.-+|.-..|+.+++........|+..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~----~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS----FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 45688899999999999999999999999988764 56678899999999999999999999988776543444333
Q ss_pred -HHHHHHHHHH-cCChhHHHHHHHHhHhC--Cc--cCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcC
Q 003353 273 -YNVLMTLFLN-KGLPYKAFEIYESMEKG--EC--SLDGSTYELMIPSLAK-----------SGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 273 -~n~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g 335 (827)
+-..-..|.+ .+.++++++.-.+.+.. +. ......|-.+.-+|.. .....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 46777777777666552 11 1123344444444432 123567888889988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
+.|..+.-.+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-. -|......
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~ 552 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDG 552 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchh
Confidence 3333333334456778899999999999999886677899999999999999999999999987765311 12222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERA---------------------GF-------LPTPSTYSCLLEMHASSGQVDSAMKL 467 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~---------------------g~-------~p~~~t~~~li~~~~~~g~~~~A~~l 467 (827)
-++.-...++.++|......+... |+ .-...++..+..-.. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccc
Confidence 222333355555555554444321 00 001112221111111 000000000
Q ss_pred HHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 468 YNSMTSAGLRP--G------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 468 ~~~m~~~g~~p--d------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 539 (827)
.. |...-+.| + ...|......+.+.+..++|...+.++....+.....|+-....+...|..++|.+.|..
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 00 11111222 2 123445556677788888888888888776554445667777788888999999999888
Q ss_pred HhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 540 MGSSGIRTN-NFIVRQLFESCMKNALYESAKP--LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 540 m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
... +.|+ .....++...+.+.|+...|.. ++..+++.++. +...|-.+...+-+.|+.++|...|...
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 874 4455 4577778888888888777777 88888888776 7888989999999999998888877653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-07 Score=101.37 Aligned_cols=291 Identities=13% Similarity=0.124 Sum_probs=182.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+.++...|++++|++.++..... .+|. .........+.+.|+.++|..++..++..+ |.+..-|..+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHh
Confidence 46667778888888888765543 3443 455577788888888888888888888887 777777777777763
Q ss_pred HcC-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC
Q 003353 247 KAD-----KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320 (827)
Q Consensus 247 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~ 320 (827)
-.. ..+...++|+++...- |...+...+.-.+.....+. .+...+..+...|+++ +|+.|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 332 4666777777776543 22222222222222212232 3455566666777653 55555555555545
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 003353 321 LDAAIKLFQEMKER----N----------FRPSFN--IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS-APMYVSLIE 383 (827)
Q Consensus 321 ~~~A~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 383 (827)
.+-..+++...... + -+|+.. ++.-+...|-..|++++|++..++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55555555554322 1 123332 3455566777788888888888887775 344 557777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HH----HH--HHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT--PS----TY--SCLLEMH 455 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~----t~--~~li~~~ 455 (827)
.+-+.|++++|.+.++........ |...-+-.+..+.++|++++|.+++....+.+..|. .. .| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776554 666666777777888888888888777766543221 11 12 2334667
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 003353 456 ASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 456 ~~~g~~~~A~~l~~~m~~ 473 (827)
.+.|++..|++-|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777776666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-07 Score=102.89 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=145.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.-.....+...|++++|++.+++-...- .............+.+.|+.++|..+|..+.+.++. |..-|..+..+
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~ 81 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3344566788999999999998865543 566778888899999999999999999999988753 55555555555
Q ss_pred HHHc-----CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 280 FLNK-----GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL-DAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 280 ~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.... ...+...++|+++...- |.......+.-.+.....+ ..+...+..+..+|++ .+|+.|-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 5222 24667788888886642 3333333232222222223 3455666777788864 5677777777766
Q ss_pred CCHHHHHHHHHHHHhCC--------------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCG--------------HRPSAPMY--VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g--------------~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 417 (827)
.+.+-...++......- -.|+...| .-+...|-..|++++|++++++.++..+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 55555555555544210 01222222 22333444445555555555544443211 133344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
..+-+.|++.+|.+.++...+.... |-..-+-.+..+.++|++++|.+++....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 4444444554444444444443222 333333344444444444444444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=113.53 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=155.3
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 258 ~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
+-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+...+++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 445566677777777777777777777777776 7777766666666777777777777777766655 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMI 416 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~l 416 (827)
|...||+.|..+|...||+.. .+..++ -.-.++..+...|--..-..++..+. .-+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 666777777777777777655 222222 01112223333333333333332221 1122333322 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 417 IESHAKSGKLDIAMSIFTDMERAGF-LPTPSTYSCLLEMHASSG-QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
+.-..-.|.++.+.+++..+..... .|..+ +++-+.... .+++-..+-....+ .|+..+|..++.+-...|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 2233344555555555544432111 11111 122222222 23333333222222 477888888888777788
Q ss_pred CHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 003353 495 LVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 564 (827)
+.+.|..++.+|.+.|+..+. .+..|+-+ .++..-+..++..|.+.|+.|+..|+.-.+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888877665 34455544 67777777788888888888888877766666666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=103.39 Aligned_cols=235 Identities=18% Similarity=0.183 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIA-----GF-RPNFGL-FTMIIESHAKSGKLDIAMSIFTDMERA-----GFL-P 443 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p 443 (827)
+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555544332 11 122222 223555666777777777777776531 211 1
Q ss_pred -CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003353 444 -TPSTYSCLLEMHASSGQVDSAMKLYNSMTS-----AGLR-PGLS-TYTALLTLLAKRKLVDVAAKILLEMKTM-----G 510 (827)
Q Consensus 444 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 510 (827)
-..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|+..+++++|..+++...+. |
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 123566666677777777777766666543 1222 2222 4555666778888888888888876543 2
Q ss_pred CCc-h--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 003353 511 YSV-D--VSASDVLMVYIKDGSVDHALRWLRFMGSSG----I--RTN-NFIVRQLFESCMKNALYESAKPLLETYVE--- 577 (827)
Q Consensus 511 ~~~-~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~--~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--- 577 (827)
... . .++..|...|.+.|++++|.+++++++... - .+. ...++.+...|.+.+.+++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 222 1 256788889999999999999998887431 1 222 45677888889999999999988887543
Q ss_pred -CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003353 578 -SAAK-VD-LVLYTSVLAHLVRCQDEQNERHLMAILS 611 (827)
Q Consensus 578 -~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~l~~~l~ 611 (827)
.|+. || ..+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3433 33 4588999999999999999999877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-07 Score=96.88 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=154.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPG--DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~--~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
...+.++.-+..+.......|+ ...|..+...+.+.|+.++|...|++.++.. |.+..+|+.+...|...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence 4556677777777764332232 3567788888899999999999999999887 888999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+|...|++..+..+. +..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|.+.+++..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999887654 67788888888989999999999999988753 443322222233445678999999997765
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG---H---RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 333 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g---~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
... .++...+ . ......|+...+ +.+..+.+.. + +....+|..+...+.+.|++++|+..|++..+..
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 3332222 2 222335555544 3444444211 0 1123567888888888888888888888888754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-07 Score=100.50 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 003353 306 STYELMIPSLAKSGRLDAAIKLFQEMKER-----NF-RPSFNI-FASLVDSMGKAGRLDTSMKVYMEMQGC-----GH-R 372 (827)
Q Consensus 306 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 372 (827)
.|...+...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777777777777777776554 10 122222 223455666666666666666665531 11 1
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 003353 373 PS-APMYVSLIESYAKAGKLDTALRLWDEMRIA-----GF-RPNF-GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444 (827)
Q Consensus 373 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (827)
|. ..+++.|..+|++.|++++|...+++..+- |. .|.+ .-++.+...|+..+++++|..+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q---------- 349 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ---------- 349 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH----------
Confidence 11 234555555666666666666555544321 10 1111 112333334444444444444444
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--
Q 003353 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSA---GLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMG----Y-- 511 (827)
Q Consensus 445 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~-- 511 (827)
...+. -..++ ..+++.|...|.+.|++++|+++|++++..- -
T Consensus 350 -------------------------~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 350 -------------------------KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred -------------------------HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 33321 01111 1245555555555555555555555554321 1
Q ss_pred Cch--HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 512 SVD--VSASDVLMVYIKDGSVDHALRWLRFMGS----SGI-RTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 512 ~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+. ..++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 2345555555555665555555554331 121 122 4466666666667777777766666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-05 Score=82.40 Aligned_cols=316 Identities=12% Similarity=0.024 Sum_probs=214.2
Q ss_pred hCCccCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003353 298 KGECSLDGSTYELMIPSLAK--SGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374 (827)
Q Consensus 298 ~~g~~pd~~t~~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 374 (827)
...+.|+..+....+.+++. .++...|...+-.+... -++.|+.....+.+++...|+.++|...|++....+ |+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py 264 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PD 264 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hh
Confidence 33345555566666666554 35555555555544433 256677888899999999999999999999887542 33
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 375 AP-MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453 (827)
Q Consensus 375 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 453 (827)
.. ......-.+.+.|++++...+...+....- -....|-.-........+++.|..+-++.++.+.. +...|-.-..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccH
Confidence 22 222233345678888888888877765321 12222322233445567888888888877764322 4445544456
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHH-HHHH-HcCCH
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-MVYI-KDGSV 530 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li-~~y~-~~g~~ 530 (827)
.+.+.|+.++|.-.|+..+. +.| +..+|..|+..|...|++.+|.-.-+...+.-.....+..-+. ..+. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 78889999999999998887 565 4569999999999999999998888777664333333333332 2222 22334
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 531 DHALRWLRFMGSSGIRTNN-FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
++|.+++++... +.|+. ...+.+..-|...|..++++.++++.+. ..||....+.|.+.+...+.+++|...+..
T Consensus 421 EKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 778888887764 45653 3455566678899999999999998875 568999999999999999999999998887
Q ss_pred HhhccCchhHHHhh
Q 003353 610 LSATKHKAHAFLCG 623 (827)
Q Consensus 610 l~~~~~~~~~~~~~ 623 (827)
....+|+....+.|
T Consensus 497 ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRG 510 (564)
T ss_pred HHhcCccchHHHHH
Confidence 77766655544444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-06 Score=86.46 Aligned_cols=316 Identities=10% Similarity=0.085 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH-HHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV-LMT 278 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~-li~ 278 (827)
+++++..+.+..++++|++++..-.+.. +.+....+.|...|-...++..|-.+++++-..- |...-|.. -..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 5667777888999999999999888776 7788899999999999999999999999988754 44433332 233
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL--AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
.+-+.+.+.+|+.+...|... |+...-..-+.+. -..+++..+..++++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 455778999999999988763 2322222222222 34678888888888876433 334555566667789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCChhHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT-----MIIESHAKSGKLDIAMS 431 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-----~li~~~~~~g~~~~A~~ 431 (827)
+.|.+-|....+-+--.....||..+.- .+.|+++.|++...++.++|++-... ++ -.+++- ..|+ -..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr-svgN---t~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR-SVGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh-cccc---hHH
Confidence 9999999998875434456778876644 46789999999999999988642211 11 011100 0000 000
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
|...+ -+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|++|...+.-. -..+++.++.+-+.-++...
T Consensus 235 ----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 ----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred ----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 11100 1223444455567888999999888888642 234577776655322 12445666666777777777
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+-|..++..++..|||..-++-|..++.+=.
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 8888899999999999999999988876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-06 Score=91.19 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+...|+.+++.+.+....+....+ .............+...|++++|.+.+++..+..+. |...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 3455556666666666776666666655443111 111223333344556677777777777777665433 4444442
Q ss_pred HHHHHH----cCChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 277 MTLFLN----KGLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 277 i~~~~~----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
...+.. .+..+.+.+.++.. .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 33444444444431 112233 3344455566777777778877777777765 445566677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 352 KAGRLDTSMKVYMEMQGCGH-RPSA--PMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788888777777665421 1222 2344566677777777777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-05 Score=84.82 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=74.9
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL--------EMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 460 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.+.+|.+++...-+..-.-..+..-.++......|+++.|.+++. .+.+.+..|. +...+...|.+.++.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-TVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-HHHHHHHHHHhccCCc
Confidence 355555655555543211112344444555566777777777776 3333333222 3344555666666655
Q ss_pred HHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003353 532 HALRWLRFMGSS--GIRTN----NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605 (827)
Q Consensus 532 ~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 605 (827)
.|..++++.... .-.+. ..++..+..--.++|..++|..+++++++..+. |..+...++.+|++. +.+.|..
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHH
Confidence 566666555421 00111 122222222233567777777777777765433 666777777777654 3444444
Q ss_pred HHH
Q 003353 606 LMA 608 (827)
Q Consensus 606 l~~ 608 (827)
+-+
T Consensus 513 l~k 515 (652)
T KOG2376|consen 513 LSK 515 (652)
T ss_pred Hhh
Confidence 443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-05 Score=87.67 Aligned_cols=223 Identities=15% Similarity=0.153 Sum_probs=140.9
Q ss_pred HHHHHHHHcCCCCccHHHHhhhCCCCCCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhH
Q 003353 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215 (827)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~ 215 (827)
.++...+...+.-..+--...+.|..|+.-.+.+-+.+ -++|.++++...+.+..+ | ..-++.+...+........
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~-~~die~I~DlFme~N~iQq 560 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEE--P-LADIEQIVDLFMELNLIQQ 560 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCC--C-cccHHHHHHHHHHHHhhhh
Confidence 44556666666666788888899999999888777776 567778887777666442 1 2223444444444444444
Q ss_pred HHHHHHHHHHcCCC--------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC
Q 003353 216 MLSLFDEMVHDSSK--------------------------NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269 (827)
Q Consensus 216 A~~l~~~m~~~~~~--------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 269 (827)
+...+-++++...+ +..-+..-+..+.+.|.+.|-++.|++.|.++.+. + -
T Consensus 561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R 637 (1666)
T KOG0985|consen 561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-R 637 (1666)
T ss_pred hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-H
Confidence 44444433333210 00112233667888899999999999888776542 1 1
Q ss_pred HHHHHHH-----HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------
Q 003353 270 TQSYNVL-----MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER---------- 334 (827)
Q Consensus 270 ~~~~n~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 334 (827)
.+..+.+ +-.|...-.++++.+.++.|...++.-|..+...+..-|...=-.+...++|+.....
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSi 717 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSI 717 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHH
Confidence 1122222 2244555678888999999988877777777776666666665666666666665432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 335 -NFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 335 -g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
++.-|+.+.--.|.+.|+.|++.+.+++.++
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 2445556666778888888888888877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-06 Score=93.50 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|.+.|+...+.... +..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444444444444444444444443221 3344444444444444444444444444443211 23344444444444
Q ss_pred cCCHhHHHHHHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTS 473 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~ 473 (827)
.|++++|.+.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555544444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-06 Score=94.63 Aligned_cols=163 Identities=8% Similarity=-0.068 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHH----c----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 444 TPSTYSCLLEMHAS----S----GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 444 ~~~t~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
+..+|..|+..|.+ . .+...|...+....+.. .-+..+|+.|.-. ...|++.-|...|-+-+...+....
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 34555555544443 1 22346777777777631 2345566666544 6678888888777777776666667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF-IVRQLFESCMKNALYESAKPLLETYV----ESAAKVDLVLYTSV 590 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~t~~~l 590 (827)
+|.++...+.+..+++.|...|...... .|++. .|....-.....|+.-++..+|..-- ..|--++..-|-+.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 8999999999999999999999988754 45433 34333222335677888888887622 23444566655555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003353 591 LAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 591 l~a~~~~g~~~~a~~l~~~l 610 (827)
..-=..+|+.++-..-.+.+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHHhccchHHHHHHhhhh
Confidence 54455666665554444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-05 Score=79.23 Aligned_cols=299 Identities=10% Similarity=0.016 Sum_probs=211.8
Q ss_pred HHHHHHH--cCChhHHHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 276 LMTLFLN--KGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 276 li~~~~~--~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-|.++++ .++-..|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ +-++.......-.+.+
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHh
Confidence 3444443 34444444444433322 255577788899999999999999999999887654 2222222333444567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.|+++....+...+.... .-....|-.-...+...++++.|+.+-++.++.... +...|-.-...+...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHH
Confidence 888888888888777532 223444555555666778899999988888875433 445555555677788999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL-TLLA-KRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-~~~~-~~g~~~~A~~l~~~m~~~g 510 (827)
|+..+... +-+...|..|+..|...|++.||.-+-+...+. +.-+..+...+. ..|. .-..-|+|..+++..++..
T Consensus 357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 99887642 137889999999999999999998877666552 223444444332 2222 2334588999999888865
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
+.-......+...+...|+.++++.++++... ..||....+.|.+.+...+.+++|.+.|...++.+++
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 54445777888889999999999999998874 5789999999999999999999999999999887776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=84.68 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=172.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
+...+.-.|.+.|++..|..-+++.++.. |.+..+|..+...|.+.|..+.|.+.|++..+..+. +....|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhH
Confidence 56677888999999999999999999988 888999999999999999999999999999987765 7778888999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCcc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 357 (827)
-+|..|++++|...|++....-.- --..||..+.-+..+.|+.+.|.+.|++..+.+ +....+.-.+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 999999999999999998876322 234588888888899999999999999999876 445567778888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413 (827)
Q Consensus 358 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 413 (827)
.|...++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+. -|...-|
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999887774 78888888888888899998888777666654 3444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-05 Score=85.65 Aligned_cols=467 Identities=13% Similarity=0.068 Sum_probs=278.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH---HhcCChhHH-------------------HHHHHHHHHc-CCC
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGM-------------------LSLFDEMVHD-SSK 229 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l---~~~g~~~~A-------------------~~l~~~m~~~-~~~ 229 (827)
..++.+.++.-+..+..++| +-++.++..+...+ ...++.+++ .-..--+... ...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w-~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSW-SLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhccc-ccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 34666778888877777664 44444444333222 233343433 2211111110 101
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCH-HHH
Q 003353 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-STY 308 (827)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~ 308 (827)
....+..+|..|.-+...+|+++.+.+.|++....-+ -....|+.+-..|...|.-..|+.++++-......|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 1245788999999999999999999999999876433 36778999999999999999999999887654333443 344
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCC-C
Q 003353 309 ELMIPSLAK-SGRLDAAIKLFQEMKER--NF--RPSFNIFASLVDSMGKAG-----------RLDTSMKVYMEMQGCG-H 371 (827)
Q Consensus 309 ~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~t~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g-~ 371 (827)
-..-+.|.+ .+.++++..+-.++... +. ......|-.+.-+|...- ...++.+.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46777777777776651 11 122355666666665321 2456778888887654 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHH
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLPTPSTYSC 450 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ 450 (827)
.|++..|-++ -|+..++.+.|.+..++..+.+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |. |.+....
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 4444444443 46677899999999999998866678889988888888899999999999876642 21 1111111
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC---------------------CC-----CC-C-HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSA---------------------GL-----RP-G-LSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~---------------------g~-----~p-d-~~t~~~li~~~~~~g~~~~A~~l 502 (827)
-+..-...++.++|+.....++.- |+ .| + ..++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 122222345555555554444320 00 00 1 1122222221110 00000000
Q ss_pred HHHHHHCC--CCchH-------hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 503 LLEMKTMG--YSVDV-------SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 503 ~~~m~~~g--~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
.. +.+.. ..|+. .|....+.+.+.+..++|...+.+..... .-....|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111 11221 24445567788888888888888777433 2234455555556677888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccc
Q 003353 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERH--LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELE 651 (827)
Q Consensus 574 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~--l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (827)
..+..++. ++...+++...+.+.|+..-|.. ++..+.. ++
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---------------------------------~d---- 750 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR---------------------------------LD---- 750 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---------------------------------hC----
Confidence 88776555 56677788888877775444433 2222111 11
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 652 EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 652 ~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
|. .+-.|--|+.++-+.|+.++|.+-|+.+.+....
T Consensus 751 p~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 751 PL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 11 2345668999999999999999999999876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-06 Score=89.41 Aligned_cols=203 Identities=10% Similarity=0.006 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|.....|..+...+...|+.+++...+....+.... .+. .........+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 455667777777777778888877777665543321 122 122222334556788888888888877652 22333433
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 310 LMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 310 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
. ...+.. .+..+.+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2 222222 3444445544443 111112223344455667777888888888888887764 33556677777778
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGF-RPNF--GLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
...|++++|...+++..+... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888887766432 1222 2344566777778888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-05 Score=86.58 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=87.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..+....||++.|+..|-.+...+ ++|-..|+.-..+++..|++++|++=-.+-++.. |.-...|+.+..++.-
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~----p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN----PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC----CchhhHHHHhHHHHHh
Confidence 345567789999999999988876 5688889989999999999999988888887776 7778899999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
.|++++|+..|.+-.+..+. |...++.+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 99999999999988876544 667777777776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-05 Score=88.28 Aligned_cols=497 Identities=12% Similarity=0.038 Sum_probs=248.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++...|+.-|+.+.+-+ +.|...|..++.+|.++|++..|.++|.+..... |.+.+.--....+.+..|++.
T Consensus 574 ea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr----P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR----PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred CccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC----cHhHHHHHHHHHHHHHhhhHH
Confidence 3466777899999888876 6788899999999999999999999999988776 666666666777778889999
Q ss_pred HHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH-------hCCccCCHHHHHHHHHHHH---
Q 003353 253 MSYCCFKKVLDSD------CKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-------KGECSLDGSTYELMIPSLA--- 316 (827)
Q Consensus 253 ~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~-------~~g~~pd~~t~~~li~~~~--- 316 (827)
+|+..+..+...- ..--..++-.+...+...|-..+|.+.+++-+ .....-+...|-.+-.+|.
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 9998888765421 00012233333333333343333333333322 1111112222222222211
Q ss_pred --------------------HcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c----CCHHHHHHH
Q 003353 317 --------------------KSGRL---D---AAIKLFQEMKERNFRPSFNIFASLVDSMGK----A----GRLDTSMKV 362 (827)
Q Consensus 317 --------------------~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~----g~~~~A~~~ 362 (827)
+.+.. | -+.+.+-.-.+ ...+..+|..|+..|.+ . .+...|...
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 11111 0 00000000000 11223445555444433 1 122355566
Q ss_pred HHHHHhCCCCCCHHHHHHHHH---------------------------------HHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIE---------------------------------SYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~---------------------------------~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+.+.++.. ..+..+||.|.- .+.++.+++.|...|...+...+. |
T Consensus 806 ~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 806 CKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 65555432 234555555543 333344455555555544433221 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH--H--HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---------CCC
Q 003353 410 FGLFTMIIESHAKSGKLDIAMSIFTDM--E--RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS---------AGL 476 (827)
Q Consensus 410 ~~t~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------~g~ 476 (827)
...|-.........|+.-++..+|..- . ..|-.++..-|-+......++|+.++-....+.+.. .|.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 333333332333345555555555431 1 122233444444444444555555443333322221 122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch-----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003353 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVD-----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550 (827)
Q Consensus 477 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (827)
.-+...|........+.+.++.|.++..+++.. ..+-+ +.-......++..|.++.|...+..... ..+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEd 1040 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDED 1040 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHH
Confidence 334456666666666677777777666655421 00111 1222344456667777766655543221 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH-HHHHhhccCchhHHH--hhhc
Q 003353 551 IVRQLFESCMKNALYESAKPLLETYVES-AAKVD-LVLYTSVLAHLVRCQDEQNERHL-MAILSATKHKAHAFL--CGLF 625 (827)
Q Consensus 551 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~t~~~ll~a~~~~g~~~~a~~l-~~~l~~~~~~~~~~~--~~l~ 625 (827)
+...-+ +..-.|+++++.+.|+++... +-.-| ++..+.++-+....+..+.|+.+ |+....++++....+ +.+.
T Consensus 1041 i~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred HhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 222222 224568999999999998753 22233 45667777777778888888765 555555555544443 2221
Q ss_pred cCCccccchhHHHHHHHhhcc-ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 626 TGPEQRKQPVLSFVREFFHGI-DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
..... ....+.+.+-+... ..+.-.-...+ ..--.|.+.|+-....++|+++.-..|.
T Consensus 1120 ild~d--a~~ssaileel~kl~k~e~~~~~~~l---l~e~i~~~~~r~~~vk~~~qr~~h~~P~ 1178 (1238)
T KOG1127|consen 1120 ILDAD--AHGSSAILEELEKLLKLEWFCWPPGL---LKELIYALQGRSVAVKKQIQRAVHSNPG 1178 (1238)
T ss_pred HHhhh--hhhhHHHHHHHHHhhhhHHhccChhH---HHHHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence 11111 11111222211111 10100000111 2335677889988889999998876654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-05 Score=85.98 Aligned_cols=249 Identities=17% Similarity=0.237 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCCCCHHHHHHHHHHHHHc
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-----NGISLFSAYNRVIQYLAKA 248 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~-----~~~~~~~~~~~li~~~~~~ 248 (827)
.|+.|.|.+..+.+ .+...|..|.+.|.+.+++|-|.-.+-.|...... ....+...-......-...
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 45555555444422 23345666666666666666555554444332110 0000001111222223445
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
|.+++|..+|++-++ |..|=..|...|.|++|+++-+.--+. . =..||.....-+-..++++.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 555555555555443 223333444555555555554432221 1 1223433444444445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
++.-.. -..++..|. .++...+...+.+. |...|.--...+-..|++|.|+.+|...++
T Consensus 882 EK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 882 EKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 443211 111111111 11222222222222 334444445555567777777777766553
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
|-+++...|-.|+.++|-++-++-. |......|...|...|++.+|..+|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4556667777777777776655422 55555667777777788888877777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00016 Score=78.78 Aligned_cols=420 Identities=12% Similarity=0.058 Sum_probs=191.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..+++++|++....+.... +-+.+.+..-+-++.+.++|++|+.+.+.-.... ..+... ---..+..+.++.+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~-fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFF-FEKAYCEYRLNKLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhh-HHHHHHHHHcccHH
Confidence 4466777777777776653 4555666666667777777777775544332111 111111 11122334567777
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA-KSGRLDAAIKLFQEM 331 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~-~~g~~~~A~~~~~~m 331 (827)
+|...++...+ .+..+...-...+-+.|++++|+++|+.+.+.+.. .+..-+.+-+ ..+-.-.+ +.+
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~----~~~ 164 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV----QLL 164 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH----HHH
Confidence 77777763222 12224444445555677777777777777665332 2222221111 00000011 112
Q ss_pred HHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 003353 332 KERNFRPSFNIFAS---LVDSMGKAGRLDTSMKVYMEMQGC-------GHRPSAP-------MYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 332 ~~~g~~p~~~t~~~---li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------~~~~li~~~~~~g~~~~A 394 (827)
......| ..+|.. ....+...|++.+|+++++...+. +-.-+.. .-..|.-.+-..|+-++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2211222 122322 334455677777777777776321 1111000 111223344567777777
Q ss_pred HHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChh-HHHHHHHHHHHcCCC----------CCHHH-HHHHHHHHHHc
Q 003353 395 LRLWDEMRIAGFRPNFGLF----TMIIESHAKSGKLD-IAMSIFTDMERAGFL----------PTPST-YSCLLEMHASS 458 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~----~~li~~~~~~g~~~-~A~~~~~~m~~~g~~----------p~~~t-~~~li~~~~~~ 458 (827)
..++...++... +|.... |.|+.+-....-++ .++..++........ -.... -+.++..|.
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 777777776643 243222 22221111111111 111222211110000 00011 112222221
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK--RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~ 535 (827)
+..+.+.++-..... ..|.. .+..++..+.+ .....++.+++...-+..+... +....++......|+++.|++
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 222333333222211 22332 33444443322 2246667777766665544332 244455666777888888888
Q ss_pred HHH--------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH
Q 003353 536 WLR--------FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES------AAKVDLVLYTSVLAHLVRCQDEQ 601 (827)
Q Consensus 536 ~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~g~~~ 601 (827)
++. ...+.+..|-. ...+..-+.+.++.+.|..++.+.+.. +-.--..++.-+..-=.+.|..+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 888 45544444443 333445566777777777777666531 11111122222233334456666
Q ss_pred HHHHHHHHHhhccCchhHH
Q 003353 602 NERHLMAILSATKHKAHAF 620 (827)
Q Consensus 602 ~a~~l~~~l~~~~~~~~~~ 620 (827)
+|..+++++...+|.....
T Consensus 476 ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDL 494 (652)
T ss_pred HHHHHHHHHHHhCCchHHH
Confidence 6666666666544433333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00012 Score=74.32 Aligned_cols=310 Identities=11% Similarity=0.050 Sum_probs=153.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..|-..+++..|+.-|..+...+ +.+-.++..-...|...|+...|+.=++.+++.. |.-..+--.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhchhhhh
Confidence 455556677777788787777753 2333455555667777777777877777777663 2223344445566777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|.+++|..=|+.+.+..+..+. ...++.+.-..++-+. ....+..+...|+...|.+.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHH
Confidence 88888888888877765432111 1111111111111111 11122233445555556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
...+++.. +=|...|..-..+|...|++..|+.=+....+.. ..++.+.--+-..+...|+.+.++...++..+. .
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--d 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--D 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--C
Confidence 55555543 3344555555556666666666655555444432 223444444445555556666665555555542 3
Q ss_pred CCHHHHHHH-------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHH
Q 003353 408 PNFGLFTMI-------------IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS---CLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 408 pd~~t~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~li~~~~~~g~~~~A~~l~~~m 471 (827)
||....-.. +......+++.++.+..+...+.......+.|+ .+-.++...|++.+|++.-.+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 333211110 111223344444444444444433221222222 2233444445555555555555
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 472 TSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 472 ~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
++ +.|| ..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 334 L~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 334 LD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred Hh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 54 3443 3344444455555555555555555555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-05 Score=95.48 Aligned_cols=333 Identities=12% Similarity=0.006 Sum_probs=181.1
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF------RPS--FNIFASLVDSMG 351 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~t~~~li~~~~ 351 (827)
....|+++.+..+++.+.......+..........+...|+++++...++...+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666552211111222223334444566777777777776643210 011 111222334455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 003353 352 KAGRLDTSMKVYMEMQGCGHRPSA----PMYVSLIESYAKAGKLDTALRLWDEMRIA----GF-RPNFGLFTMIIESHAK 422 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t~~~li~~~~~ 422 (827)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677788887777776652111121 23455556666778888877777766532 11 1112344555666777
Q ss_pred cCChhHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 003353 423 SGKLDIAMSIFTDMER----AGFL--P-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GLRPG--LSTYTALLTLLA 491 (827)
Q Consensus 423 ~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~li~~~~ 491 (827)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 7888888777776543 2211 1 2233445555666678888887777776542 11122 233444555666
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CchHhH-----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGY--SVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN---FIVRQLFESCMK 561 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~--~~~~~~-----~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 561 (827)
..|+.++|.+.+.++..... .....+ ...+..+...|+.+.|.+++............ .....+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888877777654211 111111 11223445577888888877665532211111 113345556777
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003353 562 NALYESAKPLLETYVES----AAKVD-LVLYTSVLAHLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~l~~ 612 (827)
.|++++|...+++..+. |...+ ..+...+..++.+.|+.++|...+.+...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888777643 22222 23555666777788888888777766443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-06 Score=79.47 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
...|.-+|.+.|++..|.+-+++..+.... +..++..+...|.+.|+.+.|.+-|+...+.... +-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 334445566666666666666666665432 4455666666666666666666666666654322 34445555555666
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
.|++++|...|++....-.-+. ..||..+.-+..+.|+.+.|++.|++.++..+..+.....+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666666665321111 235555555555666666666666666666555555555566666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
++.....+. ++.......|..-...|+-+.+-+.=.++
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 665555443 44444444444444555555554444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-06 Score=91.99 Aligned_cols=218 Identities=13% Similarity=0.156 Sum_probs=96.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
.+.|++.+|.-.|+..++.. |.+..+|..|...-...++-..|+..+++..+..+. |....-+|.-.|...|.-.
T Consensus 296 m~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34444545544554444444 444445555544444444444454444444444333 4444444444444444444
Q ss_pred HHHHHHHHhHhCCcc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 288 KAFEIYESMEKGECS--------LDGSTYELMIPSLAKSGRLDAAIKLFQEMK-ERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~--------pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
+|+..++..+....+ ++...-+. +.+.....+....++|-++. +.+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444444332100 00000000 11111112222333333322 33323445555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN--FGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
|...|+.++... +-|...||.|...++...+.++|+..|++..+. +|+ .+-|| |.-.|...|.+++|.+.|-+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 555555555433 224455555555555555555555555555543 222 12222 333455555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=85.07 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
..++.++|+.+.+.+.+.+ +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 49 ~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n----pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN----PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC----CcchHHhHHHHHHHHHcCch
Confidence 3445555555555555543 233344444444444444 3455555555555554 44555555554444444432
Q ss_pred --HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 252 --EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 252 --~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
+++...++++.+..++ |..+|+...-++...|+++++++.++++++.++. |...|+...
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 3445555555544433 5555555555555555555555555555544322 334444333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-05 Score=93.07 Aligned_cols=378 Identities=12% Similarity=-0.017 Sum_probs=225.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+......+...|++.+|.......... ..-..............|+++.+...++.+.......+.........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 3444555666777777776544433111 01111222233445567788888777776642211122222334444
Q ss_pred HHHHcCChhHHHHHHHHhHhCC--c----cCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGE--C----SLDG--STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS----FNIFASL 346 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g--~----~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l 346 (827)
.+...|++++|..++.+....- . .+.. .....+...+...|++++|...+++..+.--..+ ....+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 5567788888888887764320 0 1111 1222233455678899999998888766311112 1345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC--C-CHHHHH
Q 003353 347 VDSMGKAGRLDTSMKVYMEMQGCG--H-RPS--APMYVSLIESYAKAGKLDTALRLWDEMRI----AGFR--P-NFGLFT 414 (827)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~--p-d~~t~~ 414 (827)
...+...|++++|...+++..... . .+. ..++..+...+...|++++|...+++... .+.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 677788899999988888776421 0 111 23455666778888999999888877654 2221 1 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCHH--HH--H
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERA--GFLP--TPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GLRPGLS--TY--T 484 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~--t~--~ 484 (827)
.+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|.+.+++.... ....... .. .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 5666677789999998888876542 1112 2344555667778889999998888877542 1111111 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH----hHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV----SASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQL 555 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 555 (827)
..+..+...|+.+.|.+.+............ ....+..++...|+.++|...+++..+. |...+ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1223445578888888887775543221111 1345566788889999999998887643 33322 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 556 FESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 556 l~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
..++.+.|+.++|...+.+..+..-.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66788999999999999998876544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=85.10 Aligned_cols=224 Identities=11% Similarity=0.081 Sum_probs=150.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
..+...++.++|+.+.+++++.. |.+..+|+....++.+.| ++++++..++++.+..++ +..+|+.....+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 33445567778888888888776 777777777777777777 568888888888776654 666777666555555
Q ss_pred CCh--hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH--
Q 003353 284 GLP--YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---GRL-- 356 (827)
Q Consensus 284 g~~--~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~-- 356 (827)
|.. +++++.++++++...+ |..+|+...-++.+.|+++++++.++++++.+ +-|..+|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 553 5677777777765433 66777777777777788888888888888776 45566677666555544 222
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 003353 357 --DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA----GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG------ 424 (827)
Q Consensus 357 --~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g------ 424 (827)
+++.....+++... +-|...|+-+...+... +...+|.+.+.+..+.++. +...+..|++.|+...
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhh
Confidence 35666666666554 34666777777777662 3445677777776664432 5667777777777532
Q ss_pred ------------ChhHHHHHHHHHH
Q 003353 425 ------------KLDIAMSIFTDME 437 (827)
Q Consensus 425 ------------~~~~A~~~~~~m~ 437 (827)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-05 Score=82.62 Aligned_cols=377 Identities=13% Similarity=0.114 Sum_probs=211.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH-------------c-----CCCCCCCC
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVH-------------D-----SSKNGISL 234 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~-------------~-----~~~~~~~~ 234 (827)
-++++.|..+++.... .|+. ..|-.+.......|++--|.+.|..+-. . .+.+...+
T Consensus 457 ~~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred cCchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4678888887775443 2443 3566665555555555444443332111 0 00011222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
.+-..+++..+ .+++.+|..+|-+-- + -..-|..|....+|++|+++-+.. |.+.-...-.+.+++
T Consensus 533 fykvra~lail--~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 533 FYKVRAMLAIL--EKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQA 598 (1636)
T ss_pred HHHHHHHHHHH--HhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHH
Confidence 22223333333 345777777774311 1 123466777778888888775432 222122233455666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH------------
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI------------ 382 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li------------ 382 (827)
+...|+-++|-++- .. +-. -.+.|..|.+.|..-.|.+....=.. +..|......+.
T Consensus 599 l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhh
Confidence 66677766665431 11 111 22456777888877776654321110 112333333333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHc---------CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 383 -ESYAKAGKLDTALRLWDEMRIA---------GFRPNFGLF-TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 383 -~~~~~~g~~~~A~~l~~~m~~~---------g~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
+.|-+..++++|++.|++--.- .++-.+++. ..-...+...|+++.|..-|-+... .-..
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~ka 738 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKA 738 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHH
Confidence 3333444455555555431110 011111111 1122334455666666655544322 1123
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
|.+-....++.+|+.+++.+.++.. -.--|..+.+-|+..|+++.|+++|-+.- .+...|++|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 4455667889999999998887533 23356777889999999999999986542 3566799999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
+|.++-.+.. |.+.....|-+-..-..++|++.+|.+++-.. -.|| .-|..|-+.|..++..++.++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----GEPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----cCch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999887665 43444555555555577899999999888654 2344 346789999999999888765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-06 Score=90.99 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
-+.+.|++.+|.-.|+..++.+ +-+...|.-|.......++-..|+..+.+..+.. +.|....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3578899999999999999887 6788999999999999999999999999999875 4477788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMII-----------ESHAKSGKLDIAMSIFTDME-RAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
|+++++.-+...++ |..+. ..+.....+....++|-++. ..+..+|......|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988664321 11110 11111222344455555554 455457788888888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 462 DSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 540 (827)
++|.+.|+..+. ++|+. ..||.|...++...+.++|+..|.++++..+.-..+.+.|...|...|.+++|.+.|-.+
T Consensus 447 draiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999998 67754 589999999999999999999999999854444457889999999999999999988766
Q ss_pred h
Q 003353 541 G 541 (827)
Q Consensus 541 ~ 541 (827)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 5
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.7e-07 Score=92.75 Aligned_cols=247 Identities=12% Similarity=0.138 Sum_probs=135.7
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566766665544 222222223445556666777777665433 3333333 455555544444333334444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 361 KVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 361 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
.-+++.......+ +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444333222221 2222222233455567788777777542 25566666777788888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 440 GFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|++++.+....+.....
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 2 23 333334444332 23578888888887654 4567777777777777888888888888887766555445
Q ss_pred hHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 003353 516 SASDVLMVYIKDGSV-DHALRWLRFMGS 542 (827)
Q Consensus 516 ~~~~li~~y~~~g~~-~~A~~~~~~m~~ 542 (827)
+..+++......|+. +.+.+.+.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666677766666766 556667766664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00013 Score=72.78 Aligned_cols=192 Identities=14% Similarity=0.029 Sum_probs=126.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
...|-+-.++..|+++...-.++. +.+....+.+..+|-...++..|-..++++.... |.-..---.-...+-+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHHHHHHH
Confidence 333444556777788877666654 3477788888888888899999999998887653 2222222223556677
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
.+.+.+|+++...|.+. ++...-..-+.+.. ..+++..+..+.++....| +..+.+...-..-+.|++++|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 88889999998887752 33322222222222 3577777888888776432 4444444444556889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 372 (827)
+-|+...+-+--.....||..+ +..+.|+++.|++...++++.|++
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 9998887764333345666555 445678889999999888877653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0011 Score=74.60 Aligned_cols=35 Identities=9% Similarity=-0.095 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 003353 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPK 690 (827)
Q Consensus 656 ~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~ 690 (827)
..++.-||..|....++..|.+.++.+..+-+.-|
T Consensus 1330 ~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1330 TRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 34567899999999999999999999987765433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0013 Score=71.05 Aligned_cols=410 Identities=14% Similarity=0.166 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+-|..+|+.||+-+... ..+++.+.++++.... +.....|..-|..-.+.++++..+.+|.+....- .+...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F----P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF----PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC----CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 57899999999976555 9999999999998776 8888999999999999999999999999987643 467788
Q ss_pred HHHHHHHHH-cCChh----HHHHHHHHhH-hCCccCCH-HHHHHHHH---------HHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 274 NVLMTLFLN-KGLPY----KAFEIYESME-KGECSLDG-STYELMIP---------SLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 274 n~li~~~~~-~g~~~----~A~~~~~~m~-~~g~~pd~-~t~~~li~---------~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
..-|+--.+ +|+.. ...+.|+-.. +.|+.+-. ..|+..+. -+....+++...++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 777754433 23332 2334444433 33543322 23444443 245556788888899988765332
Q ss_pred CCHHHHH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHHHHH
Q 003353 338 PSFNIFA------SLVDSM-------GKAGRLDTSMKVYMEMQG--CGHRPSAP---------------MYVSLIESYAK 387 (827)
Q Consensus 338 p~~~t~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~---------------~~~~li~~~~~ 387 (827)
.=...|+ .=|+-. -+...+..|.+++++... .|...+.. .|-.+|.-=-.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1112222 111111 123356677777777653 33322222 24444432111
Q ss_pred cC------CH--HHHHHHHHHH-HHcCCCCCHHHHH-----HHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCHH
Q 003353 388 AG------KL--DTALRLWDEM-RIAGFRPNFGLFT-----MIIESHAKSGK-------LDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 388 ~g------~~--~~A~~l~~~m-~~~g~~pd~~t~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 446 (827)
++ .. ....-.+++. .-.+..|+..-.. ..-+.+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 10 1111222221 2223344332211 11122333333 467778888766543333556
Q ss_pred HHHHHHHHHHHcC---CHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHH
Q 003353 447 TYSCLLEMHASSG---QVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521 (827)
Q Consensus 447 t~~~li~~~~~~g---~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li 521 (827)
+|..+.+-=-..- +.+...+++++++.. ...|+ .+|..+++.-.+...++.|..+|.++.+.+..+. +...+.+
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 6666554322222 366777788777763 23343 4677788888888889999999999998887773 4333333
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 003353 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD--LVLYTSVLAHLVRCQD 599 (827)
Q Consensus 522 ~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~ 599 (827)
.-|--.++.+-|.++|+--..+- .-+..-....++-+...++-..|..+|++.+..+..|| ...|..+|+-=..-|+
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 34445678888999998655431 22334444566777788899999999999988865554 4689999988888899
Q ss_pred HHHHHHHHHHHhh
Q 003353 600 EQNERHLMAILSA 612 (827)
Q Consensus 600 ~~~a~~l~~~l~~ 612 (827)
...+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=90.31 Aligned_cols=251 Identities=14% Similarity=0.168 Sum_probs=154.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
+.-.|++..++.-.+ ........+.....-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775555 222211222334555667777788776544 3333333 55655555554444333344444
Q ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTY-SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
..-+++....+..++..++ ......+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444333322222222222 22234556678888888887643 3556667778888999999999999999887
Q ss_pred CCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003353 509 MGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584 (827)
Q Consensus 509 ~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 584 (827)
. ..|.+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.++. |.
T Consensus 160 ~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 160 I--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp C--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred c--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 4 445555555554433 23689999999998764 4577888888888899999999999999998877665 66
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHhhccC
Q 003353 585 VLYTSVLAHLVRCQDE-QNERHLMAILSATKH 615 (827)
Q Consensus 585 ~t~~~ll~a~~~~g~~-~~a~~l~~~l~~~~~ 615 (827)
.+...++-+....|+. +.+.+.+.++....|
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 6777788877888887 667778888776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00039 Score=70.74 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=88.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003353 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
-.|+...|++....+.+-.+ .|...|..-..+|...|++..|+.-++...+..-. +..+.--+-..+.+.|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555444321 24444444445555555555554444433332111 33333334444455555555555
Q ss_pred HHHHHHHCCCCCCHHH-H---HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCC-chHhHH---HHHHHHHHcCC
Q 003353 467 LYNSMTSAGLRPGLST-Y---TAL---------LTLLAKRKLVDVAAKILLEMKTMGYS-VDVSAS---DVLMVYIKDGS 529 (827)
Q Consensus 467 l~~~m~~~g~~pd~~t-~---~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~~---~li~~y~~~g~ 529 (827)
..++-++ +.||... | ..| +......+++.++.+-.+...+..+. +.+.++ .+-..|...|+
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 5555544 3444321 1 000 01122344555555555555555444 222222 22234455666
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003353 530 VDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
+.+|++...+.++ +.|+ ..++.--..+|.-...+++|+.-|++..+.+.
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6667666666663 3444 44555555566666666666666666665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00037 Score=75.36 Aligned_cols=405 Identities=12% Similarity=0.040 Sum_probs=236.1
Q ss_pred HHHHHHcCCCCccHHHHhhhCCCCCCHHHH----HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 003353 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHI----TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213 (827)
Q Consensus 138 ~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~----~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~ 213 (827)
....+.......++..+..+..+.|....+ ...+..+++++.|++=-....+.. +.=+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 344444455556677777888888773322 555667899988887666666653 22356899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH-----HHHHcCChhH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT-----LFLNKGLPYK 288 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~-----~~~~~g~~~~ 288 (827)
++|+.-|.+-++.. +.+...++-+.+++.... .+-+.| -++..|..+.. .+...-.+..
T Consensus 87 ~eA~~ay~~GL~~d----~~n~~L~~gl~~a~~~~~---~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD----PSNKQLKTGLAQAYLEDY---AADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred HHHHHHHHHHhhcC----CchHHHHHhHHHhhhHHH---Hhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHH
Confidence 99999999999987 889999999999882111 111111 12222222111 1111111111
Q ss_pred HHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHH-----------------------HHHHHHHHH-cCCCCCHHHH
Q 003353 289 AFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAA-----------------------IKLFQEMKE-RNFRPSFNIF 343 (827)
Q Consensus 289 A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A-----------------------~~~~~~m~~-~g~~p~~~t~ 343 (827)
-++.+..-... +...+ ...++.+.......+.- .....++.+ ....--..-.
T Consensus 151 ~l~~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111100000 00000 00111111100000000 000000000 0000001224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHH
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-------TMI 416 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------~~l 416 (827)
..+.++..+..+++.|.+-++...... -++.-++....+|...|.+.+....-....+.|-. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 556777777888888888888887654 35555666777888888887777776666555432 11222 223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 003353 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKL 495 (827)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~ 495 (827)
..+|.+.++++.|...|++.....-.|+. ..+....++++...+...- +.|... -...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 44677778888888888887654333332 3344455666666665554 344432 12222556778999
Q ss_pred HHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 496 ~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
+..|...|.++++..+.....|.+..-+|.+.|.+..|++-.+...+.+ |+ ...|.-=..++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886666788899999999999999999888887763 33 22333333344455678888888888
Q ss_pred HHHCC
Q 003353 575 YVESA 579 (827)
Q Consensus 575 m~~~g 579 (827)
.++.+
T Consensus 452 ale~d 456 (539)
T KOG0548|consen 452 ALELD 456 (539)
T ss_pred HHhcC
Confidence 87765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00077 Score=74.62 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=174.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~ 281 (827)
+.|+.|.+.|....|.+....=.. ...|......+..++.+...+++|-++|+++.. |+. -+.+|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~-----l~~de~il~~ia~alik~elydkagdlfeki~d----~dk-----ale~fk 685 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE-----LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDK-----ALECFK 685 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH-----hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHH-----HHHHHH
Confidence 346778888888777665432111 144566666666666666666666666666553 111 112222
Q ss_pred HcCChhHHHHHHHHh----------------HhCCccCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 282 NKGLPYKAFEIYESM----------------EKGECSLDG--------STYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m----------------~~~g~~pd~--------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
+..-+.+|+++-+-. ...| +.|. ......+.+....+.|.+|..+++.+.+....
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~ 764 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA 764 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc
Confidence 222222222221111 0000 0000 01112334556677888888888877766432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 417 (827)
..-|..+.+-|+..|+++-|+++|-+.- .++-.|..|.++|++++|.++-.+.. |.......|-+-.
T Consensus 765 --s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 765 --SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKA 831 (1636)
T ss_pred --cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhH
Confidence 2446677788888888888888886543 24556778888888888888766543 4444556666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497 (827)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 497 (827)
.-+-+.|++.+|.++|-.+.. |+. .|.+|-+.|..+..+++.++-... .-..|-..+..-+...|++.
T Consensus 832 edldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred HhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChh
Confidence 667778888888887765543 343 467788888888877777654321 11235556667777888888
Q ss_pred HHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 498 ~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
.|++-|-++-+ |.+-+.+|-..+-+++|.++-+
T Consensus 900 aae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 900 AAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 88877755433 5566777777787887776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0034 Score=72.30 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
.|+..-+..+.++...+-..+-.+++++++-.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~ 1013 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD 1013 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC
Confidence 34455555566666666666666666666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00013 Score=86.41 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=169.3
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC-GHR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
|++..... +.+...|-..|......++.++|.++.++++.. +++ --...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33444332 455677888888888888999999998888742 111 1134677777777777888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---H
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG---L 480 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~ 480 (827)
.. -....|..|...|.+.+.+++|.++++.|.++ +.-....|...++.+.++.+-+.|..++.+.++. -|. .
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 42 12456788888899999999999999998865 2246778888888888888888899998888873 343 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN--FIVRQLFES 558 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~ 558 (827)
......+..-.+.|+.+.+..+|+..+...++....|+..|++=.+.|+.+.+..+|++..+.++.|-. ..|...+.-
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 344445555567889999999999888887777778888889888999999999999998888877653 244444433
Q ss_pred HHHcCCHHH
Q 003353 559 CMKNALYES 567 (827)
Q Consensus 559 ~~~~g~~~~ 567 (827)
=..+|+-+.
T Consensus 1681 Ek~~Gde~~ 1689 (1710)
T KOG1070|consen 1681 EKSHGDEKN 1689 (1710)
T ss_pred HHhcCchhh
Confidence 334454443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-07 Score=61.07 Aligned_cols=31 Identities=45% Similarity=0.835 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 371 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.||..|||+||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.011 Score=67.79 Aligned_cols=481 Identities=12% Similarity=0.049 Sum_probs=258.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV--LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~--l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
+++..|++-.....++. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-..|...++.+
T Consensus 23 ~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~----~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK----GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC----CCchHHHHHHHHHHHHHhhhh
Confidence 56777888888888875 332 23333333 468899999998888776655 568888999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC----------HH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR----------LD 322 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~----------~~ 322 (827)
+|..+|++..+.. |+..-...+..+|++.+.+.+-.++--+|-+. .+-+.+.+-++++...+... ..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999888653 56666677777888887776544333333332 33466777777776655322 33
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYM-EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 323 ~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
-|.+.++.+.+.+ --.+..-.-.-...+-..|++++|..++. ...+.-..-+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566666666554 11111112222334456788899988884 333332333455556677788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCH
Q 003353 401 MRIAGFRPNFGLFTMIIESHAK----------------SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH---ASSGQV 461 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~ 461 (827)
+...|.. | |...++.+++ .+..+...+..++...... -..|-+-+.++ -.-|+.
T Consensus 252 Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 252 LLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCCh
Confidence 8887643 2 3333332221 1222333332222222111 11122222222 234666
Q ss_pred hHHHHHHHHHHHC----------------------------CCCCCHH-------HHHHHHHHHHhcCC-----HHHHHH
Q 003353 462 DSAMKLYNSMTSA----------------------------GLRPGLS-------TYTALLTLLAKRKL-----VDVAAK 501 (827)
Q Consensus 462 ~~A~~l~~~m~~~----------------------------g~~pd~~-------t~~~li~~~~~~g~-----~~~A~~ 501 (827)
++++..|-+-... +..++.. .+...+..-...|. -+.-..
T Consensus 325 ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 325 EEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 6654443221100 0011111 01111111111221 222223
Q ss_pred HHHHHH---HCCC------Cch----------HhHHHHHHHHHHcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003353 502 ILLEMK---TMGY------SVD----------VSASDVLMVYIKDGSVD---HALRWLRFMGSSGIRTNNFIVRQLFESC 559 (827)
Q Consensus 502 l~~~m~---~~g~------~~~----------~~~~~li~~y~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (827)
++.+.. ++|. -|. .+.+.|+++|-+.++.. +|+-+++.-.... ..|..+--.++..|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence 332221 2331 111 13456778888877765 4444444444322 22344555677888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc----CchhHHHhhhccCCccccchh
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK----HKAHAFLCGLFTGPEQRKQPV 635 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~ 635 (827)
+-.|-...|.++++.+--..+.-|..-|. +..-+.-.|++..+...++.....- .....++.... ..+ .
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY---r~g---~ 556 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY---RRG---A 556 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH---HcC---c
Confidence 88898888888888886666666655543 3345556677888777766543321 11222221111 001 1
Q ss_pred HHHHHHH---hhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHH
Q 003353 636 LSFVREF---FHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682 (827)
Q Consensus 636 ~~~~~~~---~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~ 682 (827)
.+.+.++ -+.+.... --....+-|..++.++..++.++=...++.+
T Consensus 557 ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~ 605 (932)
T KOG2053|consen 557 YSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNADRGTQLLKLLESM 605 (932)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCcHHHHHHHHhcc
Confidence 1112221 11121111 0112334578888888888888776666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-05 Score=87.07 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
.-..+...+...|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33344455555555555555555443 244445555555555555555555444 2345555555555554
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~ 500 (827)
...-+++|.++++....+ .-..+.......++++++.+.|+.-.+ +.|- ..+|-.+..+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHH
Confidence 444455555555543321 000111111224555555555555444 2222 234444444445555555555
Q ss_pred HHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 501 ~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
+.|...+...+.....|+++-.+|.+.|+..+|...+++..+.+..++. +|...+-...+-|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555544333345555555566666666666666555555533332 222222334455566666665555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-07 Score=60.36 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 265 g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=75.14 Aligned_cols=185 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH-
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT- 270 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 270 (827)
.....+..++..+.+.|++++|...|+++.... +.+. .++..+..+|.+.|++++|...++++.+..+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 455677777788888888888888888887765 3332 46677788888888888888888888765543111
Q ss_pred -HHHHHHHHHHHHc--------CChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003353 271 -QSYNVLMTLFLNK--------GLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340 (827)
Q Consensus 271 -~~~n~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 340 (827)
.++..+..++.+. |++++|.+.|+++.... |+. ..+..+... .. .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~~------~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHHH------HH--------
Confidence 2444445555443 55666666666665532 222 122111111 00 0000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
.....+...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112344455666666666666666654321 11234555666666666666666666665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00038 Score=82.54 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKER-NFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
.|-..|.-....+++++|+++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+.. -....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHH
Confidence 4444444455555555555555554432 1110 01234444444444454555555555555421 1123444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCH
Q 003353 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~ 461 (827)
..|.+.+.+++|-++++.|.+. +.-....|...++.+.+..+-+.|..++.+..+.=.+ -.+......+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555555555555555555543 1123444555555555555555555555554432110 1222333333444455555
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 003353 462 DSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
+++..+|+..+.. .| -...|+..|+.-.+.|+.+.++.+|++++..++.+.
T Consensus 1617 eRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5555555555442 12 223555555555555555555555555555555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-05 Score=84.24 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
+|--..-..+...+.+.|-..+|+.+|++... |.-+|.+|+..|+..+|..+..+-.++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 33333344455556666666666666665432 344566666666666666666655552 3566666666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+..+--..+|..+..+..++++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 66555555566666666554331 11111111222566666666666666654444456666666666666666
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.|.+.|..... ..|| ...|+.+-.+|.+.|+-.+|...+.+..+.+. -+...|..-+......|.+++|.+...++
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 66666666653 3344 33566666666666666666666666666552 24444444444555666666666655543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00022 Score=83.33 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=130.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 193 ~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
++.++..+..|..+..+.|++++|..+++...+.. |.+..+...++..+.+.+++++|+..+++..+..+. +...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 57889999999999999999999999999999987 888999999999999999999999999999988765 7788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 347 (827)
.+.+..++.+.|++++|.++|++....+ +-+..++..+..++.+.|+.++|...|++..+.- .+....|+.++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8889999999999999999999999843 2357899999999999999999999999998764 44445555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00034 Score=69.10 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=134.9
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
-+.-.|++..++..-...... +-+...-..+-++|...|.+..... +..... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 334456666655544443322 1234444445566666665443322 222222 2333333333333333444333
Q ss_pred HH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 359 SM-KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 359 A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444443333343333334456777888888887776521 23333333555667778888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 438 RAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 438 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+- -+..|.+.|..++.+ .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++....+.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 64 255666666666654 34578888888888764 56777888888888888888888888888888776665
Q ss_pred hHhHHHHHHHHHHcCCH
Q 003353 514 DVSASDVLMVYIKDGSV 530 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~ 530 (827)
..+..++|..-...|..
T Consensus 241 petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 55555555544444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.7e-05 Score=73.74 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=80.0
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...|+.+.++.+...+...+ +.+.......+....+.|++.+|...|.+..... ++|..+|+.+..+|.+.|+
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccC
Confidence 334455555554444433321 3344444445555566666666666666655554 5556666666666666666
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 330 (827)
+++|..-|.+..+..+. +....|.|.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666555554332 4444555555555556666666655555544322 344444455555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00017 Score=73.84 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGSSGI-RTN-NFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.+...|.+.|++++|...+++..+... .|. ...+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556667777777777776665421 122 345556666677777777777776666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.018 Score=62.63 Aligned_cols=411 Identities=13% Similarity=0.147 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.|..+|+.||.-+... .++++.+.++++...-+ -....|..-|..-....+++....+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 89999999999988777 99999999999986433 256789999999999999999999999998753 356667666
Q ss_pred HHHHHH-cCCHHH----HHHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCC--
Q 003353 312 IPSLAK-SGRLDA----AIKLFQEMK-ERNFRP-SFNIFASLVDS---------MGKAGRLDTSMKVYMEMQGCGHRP-- 373 (827)
Q Consensus 312 i~~~~~-~g~~~~----A~~~~~~m~-~~g~~p-~~~t~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 373 (827)
|.--.+ .|+... ..+.|+-.. +.|+.+ +...|+..+.. |....+++...++|.++...-+..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 653332 233332 334444433 445332 22346655543 334456778888888887532111
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHhcCC
Q 003353 374 ----SAPMYVSLIESY-------AKAGKLDTALRLWDEMRI--AGFRPNFGL---------------FTMIIESHAKSGK 425 (827)
Q Consensus 374 ----~~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~t---------------~~~li~~~~~~g~ 425 (827)
|-..|..=|+.. -+...+..|.++++++.. .|+.-+..+ |-.+|+- .+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 112222212211 123356777777777654 343221111 3223321 11111
Q ss_pred hh---------HHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHHcCC-------HhHHHHHHHHHHHCCCCCCHHHH
Q 003353 426 LD---------IAMSIFTDM-ERAGFLPTPSTY-SC----LLEMHASSGQ-------VDSAMKLYNSMTSAGLRPGLSTY 483 (827)
Q Consensus 426 ~~---------~A~~~~~~m-~~~g~~p~~~t~-~~----li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~ 483 (827)
+. ...-+++.. .-.+..|++.-. .. .-+.+...|+ .+++..++++.++.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122221 122333332110 01 1112233333 45666667666553223344444
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 003353 484 TALLTLLAKR---KLVDVAAKILLEMKTM-GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-NNFIVRQLFES 558 (827)
Q Consensus 484 ~~li~~~~~~---g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 558 (827)
..+.+--... ...+.....++++... ..+++.+|..++..-.+...++.|..+|.++.+.+..+ +..+.++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4433321111 1355556666666543 44566778888888888888899999999998887777 56677777665
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHH
Q 003353 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSF 638 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 638 (827)
|| .++.+-|.++|+--++. ...+..--...++-+.+.++...++.+|+....+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l----------------------- 466 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL----------------------- 466 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC-----------------------
Confidence 54 47888888888865543 222444456677788888888888888887654311
Q ss_pred HHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 639 VREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
.++-..-+|+.+++.=...|+++.+.++=++...
T Consensus 467 ------------~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 ------------SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ------------ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0001123577788888888888888877655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.7e-05 Score=74.23 Aligned_cols=120 Identities=12% Similarity=0.205 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCC--h
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL-FLNKGL--P 286 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~-~~~~g~--~ 286 (827)
.++.+++...++..++.. |.+...|..+...|...|++++|...|++..+..+. +...+..+..+ +...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~----P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCc
Confidence 344445555555555444 555555555555555555555555555555554433 44444444443 234444 2
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
++|.+++++..+.... +..++..+...+.+.|++++|...++++.+..
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555544322 34445555555555555555555555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00031 Score=69.57 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
..+-..+.-.|+-+.+..+........+ .|....+..+....+.|++.+|+..|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4444455555555555555544333222 24444444555555566666666666655543 234555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 398 (827)
|+.++|..-|.+..+.. .-+....|.|.-.|.-.|+.+.|..++......+ ..|...-..+.......|++++|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555543 2333445555555555666666666665555443 224444444555555556666655554
Q ss_pred HH
Q 003353 399 DE 400 (827)
Q Consensus 399 ~~ 400 (827)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.6e-05 Score=73.09 Aligned_cols=120 Identities=8% Similarity=0.121 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH-HHcCC--HHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL-AKSGR--LDAA 324 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~-~~~g~--~~~A 324 (827)
.++.+++...++...+..+. |...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44556666666666655543 666677777777777777777777776666432 2455555555543 45555 3677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 370 (827)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777776665 4455666666666667777777777777766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=67.84 Aligned_cols=109 Identities=11% Similarity=-0.017 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
...|+.+.+.+ |+ .+......+.+.|++++|...|+..+... |.+..+|..+..++.+.|++++|...|+.
T Consensus 13 ~~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555532 33 34556677778888888888888887776 77788888888888888888888888888
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.....+. +...|..+..++...|++++|++.|+...+.
T Consensus 84 Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8876653 7777778888888888888888888887764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0012 Score=78.10 Aligned_cols=240 Identities=11% Similarity=0.041 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..|+..+...+++++|.++.+..++.. |.....|-.+...+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~----P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH----KKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 4456788899999989999999999999887775 66666666666677777776655444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.++.......++.-...+.+.|... .-+...+..+..+|-+.|+.++|.++++++.+.+ +-|+.+.|.+...|+..
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2333333444454444444455543 2355688888999999999999999999999887 67888899999999988
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
++++|++++.+.... +...+++.++.+++.++....+. |...+-.+ .
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------E 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------H
Confidence 999999988887742 66777899999999998875432 22222222 2
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 434 TDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 434 ~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
+.+... |..--+.++-.+-..|...++++++..+++.+++..- -|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 222211 2222445566677778888899999999999988422 24456666666665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00089 Score=79.14 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=123.1
Q ss_pred HHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 003353 134 AVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209 (827)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~ 209 (827)
...++..++..-.| ++.......|+... ++..+...+++++|+++.+.....+ +-....|..+...+.+
T Consensus 5 ~~~~~~~~~~ee~~-----~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q 77 (906)
T PRK14720 5 DIDKLTSLLNEEKW-----TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLS 77 (906)
T ss_pred hHHHHHHHhhhhhh-----hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHh
Confidence 45666777765444 34444555666544 4666668899999999999877764 3334455555557778
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.++.+++..+ .+.. ......++.-...+.+.|.+.+ -+..++-.+..+|-+.|+.++|
T Consensus 78 ~~~~~~~~lv--~~l~------------------~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 78 RRPLNDSNLL--NLID------------------SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred hcchhhhhhh--hhhh------------------hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHH
Confidence 8887666665 3332 2233333333333333444432 2445677788888888888888
Q ss_pred HHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.++++++++.. +-|..+.|.+...|+.. ++++|.+++.++..+ |...+++.++.+++.++...
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888888765 33677788888888888 888888888777654 44555666677777666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0022 Score=63.54 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=156.3
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 322 (827)
+-+.-.|.+..++..-....... -++..-..+-++|...|.+..... +.... -.|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 34445566666655544433321 233334445566777776543322 22221 1233333333333333334433
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 323 A-AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 323 ~-A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33455555555444444444455667889999999999887622 3333333345567888899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 477 (827)
.+- -+..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+.-
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 874 266778877777765 45788999999999874 567888999999999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCC
Q 003353 478 PGLSTYTALLTLLAKRKLV-DVAAKILLEMKTMGY 511 (827)
Q Consensus 478 pd~~t~~~li~~~~~~g~~-~~A~~l~~~m~~~g~ 511 (827)
-++.+...++..-...|.- +-..+.+.++....+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 2556666666555455543 444555566655433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.039 Score=63.65 Aligned_cols=457 Identities=14% Similarity=0.097 Sum_probs=242.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCC-CCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 003353 127 KPFLNASAVAKIVEVVNRWKWGPELETQLDKLQF-VPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201 (827)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~ 201 (827)
+|....+.+.+++.+++.....++. ..|+.... .++... +..++..++..++|..+++.+.... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHH
Confidence 3665667778888888877755555 55555532 233222 3555667788888999999888864 5667777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHhHhCC-CCCCH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD----------KLEMSYCCFKKVLDSD-CKIDT 270 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~ 270 (827)
.+..+|+|.+++.+-.+.--++.+.- |.+.+.+=++++.+.... -..-|.+.++.+.+.+ .--+.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~----pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNF----PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 77788888888876666555555543 445554444555554432 1334666777776543 11111
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH-HhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYE-SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 349 (827)
.-...-...+...|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~s 266 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDS 266 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHH
Confidence 111122233445678888888883 33333333345555667777888888888888888888877 233 3333332
Q ss_pred HH----------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCH
Q 003353 350 MG----------------KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA---KAGKLDTALRLWDEMRIAGFRPNF 410 (827)
Q Consensus 350 ~~----------------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~ 410 (827)
+. ..+..+...+...+..... ....|-+-+.++. .-|+.+++.-.|-+- -|-.|
T Consensus 267 v~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp-- 339 (932)
T KOG2053|consen 267 VFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP-- 339 (932)
T ss_pred HHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc--
Confidence 22 1222333333333333221 1122333333333 346777665444321 12111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCC-----HhHHHHHHHHHH---HC-
Q 003353 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS-------TYSCLLEMHASSGQ-----VDSAMKLYNSMT---SA- 474 (827)
Q Consensus 411 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~li~~~~~~g~-----~~~A~~l~~~m~---~~- 474 (827)
.|..=+..|...=..+.-..++...... .++.. -+.+.+..-.-.|. .+.-..++.+.. ++
T Consensus 340 -cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 340 -CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred -HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 1111122222222222222222222211 00000 01112222222221 122223332221 12
Q ss_pred -----CCCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHH
Q 003353 475 -----GLRPGLS---------TYTALLTLLAKRKLVD---VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537 (827)
Q Consensus 475 -----g~~pd~~---------t~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~ 537 (827)
++-|+.. +-+.|++.+.+.++.. +|+-+++.-.......-.+--.+|..|+-.|-+..|.++|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 2333332 3456778888877765 4555555555544433345567888999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+.+--+.++.|..-|. +..-+...|++..+...++...+.--..-..+-..+..|| +.|.+.+..+++
T Consensus 497 ~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~ 564 (932)
T KOG2053|consen 497 KTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEML 564 (932)
T ss_pred HhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHH
Confidence 9998888888876663 3356677888888888877665421111112223344444 557776665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00043 Score=80.96 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.++.++-.|.....+.|++++|..+++...+..+. +...+..+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 777999999999999999999999999999987654 6777888899999999999999999999886432 56677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.- .+-...|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999999999999999854 4567899999999999999999999999998653 34445555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=66.53 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=74.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 184 f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
++.+...+ +.+......+...+.+.|++++|.+.++.+...+ +.+...+..+...|.+.|++++|...++...+
T Consensus 6 ~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 6 LKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444443 2344555566667777777777777777777665 66777777777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.++. +...|..+...|...|++++|.+.|++..+.
T Consensus 80 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 80 LDPD-DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5533 5666666777777777777777777777663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00038 Score=65.09 Aligned_cols=95 Identities=5% Similarity=-0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+++.+.+ +.+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444555556666666666666655542 2245555566666666666666666666666554 4455556666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 003353 353 AGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~ 369 (827)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0025 Score=68.52 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 355 RLDTSMKVYMEMQGCG--HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 355 ~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
++.++...-+++...+ -.|+...+...+.+......-..+..++.+..+. .-...-|.. .-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 3444444445554321 2345555566665544433333333333322221 111222332 3345567888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
++.+...- +-|+..+....+.+...++.++|.+.++.+.. ..|+ ....-.+..++.+.|+..+|..+++......+
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 88877653 23566666777888889999999999988888 5676 45666677788889999999999988888877
Q ss_pred CchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 512 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.....|..|..+|...|+..+|..... .+|...|++++|+..+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 777788888889999998888876544 3566778888888888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00084 Score=72.06 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+.-......+.|++++|+..++.+++.. |.|+..+....+.+.+.++.++|.+.++++....+. ....+-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ----PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHH
Confidence 33334445567888899999998888776 888888888888899999999999999888876533 2666777888
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
+|.+.|++.+|+.+++...... +-|...|..|..+|...|+..++.....+... ..|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHH
Confidence 8888899998888888887763 44788888899999998888888877766542 3577778
Q ss_pred HHHHHHHHHhC
Q 003353 359 SMKVYMEMQGC 369 (827)
Q Consensus 359 A~~~~~~m~~~ 369 (827)
|...+....+.
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 87777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0063 Score=59.96 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..++-+....|+.+.|...++.+...- |.+..+-..-.-.+-..|.+++|.++++.+.+.++. |.++|-.-+...
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAil 130 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence 344444444555555555555544433 222222222222233344555555555555544432 444444444444
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-.
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4444444555444444433 3334555555555555555555555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00081 Score=62.06 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 219 l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+++++... +.+......+...+.+.|++++|.+.|+.+.+.++. +...|..+...+...|++++|...+++..+
T Consensus 5 ~~~~~l~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGLD----SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcCC----hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443 445555666666666777777777777766665433 566666666666666777777777766655
Q ss_pred CCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 299 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
.+ +.+..++..+...+...|++++|.+.++...+.
T Consensus 80 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 80 LD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 224555555666666666677766666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.018 Score=56.81 Aligned_cols=186 Identities=14% Similarity=0.111 Sum_probs=103.1
Q ss_pred CChhHHHHHHHHhHh---CC-ccCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 284 GLPYKAFEIYESMEK---GE-CSLDGS-TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 284 g~~~~A~~~~~~m~~---~g-~~pd~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+.++.++++.+++. .| ..++.. .|..++-+....|+.+.|..+++++.++= +-+..+--.-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456667777766653 23 445554 34455566667777777777777776652 3222222222223344677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|+++|+.+.+.+ +.|.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+.+.|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 445666665555555566666666666665554 334666666666666666666666666666654
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHH
Q 003353 439 AGFLPTPSTYSCLLEMHASSG---QVDSAMKLYNSMTS 473 (827)
Q Consensus 439 ~g~~p~~~t~~~li~~~~~~g---~~~~A~~l~~~m~~ 473 (827)
..+ .+..-+..+.+.+.-.| +++-|.+.|.+.++
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 321 12222333333332222 34455555555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.9e-05 Score=50.72 Aligned_cols=33 Identities=39% Similarity=0.732 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.4e-05 Score=50.89 Aligned_cols=33 Identities=30% Similarity=0.682 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0034 Score=58.82 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH--HHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT--QSY 273 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 273 (827)
.|..++..+ ..++...+...++.+.... +.+ ..+.-.+...+...|++++|...|+.+......++. ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 344444443 3566666666666666554 333 223333445566666666666666666654422221 233
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 330 (827)
..|...+...|++++|+..++...... .....+.....++.+.|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555666666666665432221 2233444555556666666666665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.1e-05 Score=49.86 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccC
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (827)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=49.43 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0025 Score=69.25 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=79.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
+|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444555667777777777777653 33 3334666666667777777777777753 1224445555555667777
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+++.|.++.+++.+..+..-.+|..|..+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888877777655544577777777777777777777776655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=69.04 Aligned_cols=127 Identities=13% Similarity=0.201 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
-..-..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..... +-|......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344555666666788888888888888754 34 33446777777777778888888877642 2355666666667
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+.+.++++.|.++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 778888888888888887764 4555688888888888888888887777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0036 Score=58.64 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDG--STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
..+...|++++|.+.|+........|+. ...-.+...+...|++++|+..++......+ ....+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence 3444455555555555555443311111 1222233444445555555555443222211 22333444444445555
Q ss_pred HHHHHHHHH
Q 003353 356 LDTSMKVYM 364 (827)
Q Consensus 356 ~~~A~~~~~ 364 (827)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555544444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.26 Score=55.33 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHhHh
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI----------QYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~m~~ 263 (827)
.|-+..|..+.......-.++.|...|-+..... -+.....|- ..-+--|++++|+++|-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 5778899988888888888888888776543321 111111111 111224788888888877765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 342 (827)
++ .-|..+.+.|+|-...++++.--.. .-..-...|+.+...++....|++|.+.|..-..
T Consensus 763 rD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 763 RD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred hh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 32 2355666777777666666432110 0001134677777788888888888877765321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
-...+.+|.+..++++-+.+-..+. -|....-.|..++.+.|.-++|.+.|-+- +. | -+.++.|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHH
Confidence 1235666666666666555554443 34555666777788888888887766432 11 1 134566777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 423 SGKLDIAMSIFTDMERAGFLPTPSTYS--------------CLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~p~~~t~~--------------~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
.+++.+|.++-++..- |.+.|.- --|..+.+.|+.-+|-+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7777777776654332 1222111 123445556666666666666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=54.45 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.|+...+..+. +..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHH
Confidence 344444555555555555555555443 333445555555555555555555555555443322 334444555555
Q ss_pred HHcCChhHHHHHHHHhH
Q 003353 281 LNKGLPYKAFEIYESME 297 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~ 297 (827)
...|++++|...+.+..
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 55555555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=70.89 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS--DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
+.+......++..+....+++++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||.+|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 555556666666666666677777777666643 111112344577777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776666555556665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0055 Score=54.78 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC--CHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVL 276 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~l 276 (827)
++..++..+.+.|++++|.+.|+.+..... +.+....++..+..++.+.|++++|...|+.+....+.. ...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445555566666666666666666665431 001123445556666666666666666666665433221 13445555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0048 Score=67.19 Aligned_cols=91 Identities=13% Similarity=-0.022 Sum_probs=65.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++++|+++|+++++.. +.+...|..+..+|.+.|++++|+..++++.+..+. +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 455566777777777777777766 667777777777777777777777777777765543 566677777777777
Q ss_pred CChhHHHHHHHHhHhC
Q 003353 284 GLPYKAFEIYESMEKG 299 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~ 299 (827)
|++++|+..|++.++.
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777663
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.054 Score=57.04 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHC----CCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-----CHH-HHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTM----GYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-----NNF-IVRQLFESCM 560 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~----g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~ 560 (827)
|++++|.+.|+++.+. + .+. ..+..+...+.+.|++++|.++|++....-... +.. .+-..+-++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 5555555555555432 1 111 133445556666677777777776665432221 111 1112222445
Q ss_pred HcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHH
Q 003353 561 KNALYESAKPLLETYVESAAK----VDLVLYTSVLAHL 594 (827)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~a~ 594 (827)
..|++..|.+.|++.....+. ........|+.+|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 567777777777776654321 1233445555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0048 Score=51.72 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=6.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003353 348 DSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~ 365 (827)
..+...|++++|.+.+++
T Consensus 42 ~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 42 AAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0043 Score=53.38 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 350 MGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAG--------KLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 444444444444444321 2233455555555555555555555555554
Q ss_pred H
Q 003353 421 A 421 (827)
Q Consensus 421 ~ 421 (827)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 4
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=46.24 Aligned_cols=27 Identities=48% Similarity=0.816 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
|+++|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=68.29 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKER--NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 304 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
+......+++.+....+++++..++-+.... ....-..|..+++..|.+.|..++++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444444444444444332 11111123334444444444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 419 (827)
|+.+.+.|++..|.++..+|...+.-.+..|+..-+.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 44444444444444444444443333333333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.17 Score=53.22 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----H--hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-----V--SASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-----~--~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+...+.+.|++++|.++|++......... . .+...+..+...|+...|.+.+++..+
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333444555555555555555544322211 0 122233344445555555555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0042 Score=53.43 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=38.5
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGF-LPTPSTYSCLLEMHASSG--------QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
...+++.....+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333444444444444444444 444444444444433321 23455666777777777777777777776654
Q ss_pred h
Q 003353 492 K 492 (827)
Q Consensus 492 ~ 492 (827)
+
T Consensus 116 k 116 (120)
T PF08579_consen 116 K 116 (120)
T ss_pred H
Confidence 3
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00036 Score=45.70 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
+|+++|++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=52.32 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=4.3
Q ss_pred cCCHHHHHHHHH
Q 003353 527 DGSVDHALRWLR 538 (827)
Q Consensus 527 ~g~~~~A~~~~~ 538 (827)
.|+.++|.+.++
T Consensus 89 ~~~~~~A~~~~~ 100 (119)
T TIGR02795 89 LGDKEKAKATLQ 100 (119)
T ss_pred hCChHHHHHHHH
Confidence 333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.029 Score=59.15 Aligned_cols=285 Identities=9% Similarity=-0.007 Sum_probs=130.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+-+..++.+|+..+...+... +.+..-|..-...+...|++++|.--.+.-.+.... ....+...-.++...+..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC----PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC----ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556666666676666665 555666666666666677777665555444332111 111222233333333333
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASL-VDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l-i~~~~~~g~~~~A~~~~~ 364 (827)
.+|.+.++ +...| ....++..++....... +|.-.+|..+ ..++...|++++|..+--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44443333 11111 01111222222221111 1222333333 234555666666666655
Q ss_pred HHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 003353 365 EMQGCGHRPSAPMYVSLIE--SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442 (827)
Q Consensus 365 ~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 442 (827)
...+.. ..+ .+...++ ++--.++.+.|...|++....+ ||...--.+ -...+.++.+.+.
T Consensus 194 ~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~--- 255 (486)
T KOG0550|consen 194 DILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKER--- 255 (486)
T ss_pred HHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhh---
Confidence 555432 112 2222232 2233556666666666655532 332221111 1111122222222
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHH
Q 003353 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA---GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519 (827)
Q Consensus 443 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 519 (827)
.+-..+.|++.+|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--++..+.+..-...+..
T Consensus 256 ---------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 256 ---------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred ---------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 12344566666666666666652 233444555555555666777777776666665532211112222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
-..++.-.+++++|.+-|++..+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233445556667777666666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.29 Score=51.96 Aligned_cols=270 Identities=14% Similarity=0.045 Sum_probs=146.5
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+....++..|+..+..+.... +-+...|..-+..+...|++++|.--.+.-++.. +.....+...-..+...+.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k----d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK----DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC----CCccccccchhhhhhhhHH
Confidence 345566777888888888763 4556667777777888888888887776666554 3344455555556666666
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCc-cCCHHHHHHHHH-HHHHcCCHHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC-SLDGSTYELMIP-SLAKSGRLDAAIKLF 328 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~li~-~~~~~g~~~~A~~~~ 328 (827)
..+|.+.++ |...| ....|+..++....... +|...+|..+-. ++.-.|+.++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 666666655 11111 11222333333322211 133444443332 445567777777776
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHHcCCHHHHH
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM-------------YVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------------~~~li~~~~~~g~~~~A~ 395 (827)
-...+.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|++..|.
T Consensus 193 ~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 6666554 2333333333344445677788888887777543 33221 111122344566677777
Q ss_pred HHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHH
Q 003353 396 RLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST---YSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 396 ~l~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~~ 469 (827)
+.|.+.+... ..|+...|-....+..+.|+.++|+.-.++..+. |..- |..-..++...+++++|++-|+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665432 3344445555555556666666666666665553 2221 1111233444555666666666
Q ss_pred HHHH
Q 003353 470 SMTS 473 (827)
Q Consensus 470 ~m~~ 473 (827)
...+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 5554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0082 Score=57.80 Aligned_cols=84 Identities=7% Similarity=-0.055 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....|..++..+...|++++|...|++.+.... +......++..+...|.+.|++++|+..+++.....+. ...+++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 345666777777778888888888888776531 00112346777777888888888888888777764322 3455555
Q ss_pred HHHHHH
Q 003353 276 LMTLFL 281 (827)
Q Consensus 276 li~~~~ 281 (827)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=64.64 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=83.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...++++.|++.|+.+.+.. +.+...|..+..++.+.|++++|+..+++++... +.+..+|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD----PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHH
Confidence 444556789999999999999976 5678899999999999999999999999999987 8889999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCC
Q 003353 248 ADKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~ 267 (827)
.|++++|+..|++..+..+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999986643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0061 Score=61.80 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
.+-+.+.++|.+|+..|.+.++.. |.|...|..-..+|++.|.++.|++-.+..+..++. -..+|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHcc
Confidence 445567778888888888888776 777777888888888888888887777777765432 456777788888888
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
|++++|++.|++.++ +.|+-.+|-.=++.
T Consensus 163 gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888888888877776 56776666554443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.031 Score=51.91 Aligned_cols=85 Identities=11% Similarity=-0.155 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569 (827)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 569 (827)
+...|++++|+.+|+.+....+.....|..|..++-..|++++|+..|......+. -|...+-.+..++.+.|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHH
Confidence 34445555555555554444443334444444444444555555555544444332 12233333334444445555554
Q ss_pred HHHHHH
Q 003353 570 PLLETY 575 (827)
Q Consensus 570 ~~~~~m 575 (827)
+.|+..
T Consensus 124 ~aF~~A 129 (157)
T PRK15363 124 KALKAV 129 (157)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=57.52 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC----------------ChhHHH
Q 003353 232 ISLFSAYNRVIQYLAKA-----DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG----------------LPYKAF 290 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g----------------~~~~A~ 290 (827)
..+-.+|..+++.|.+. |.++-....++.|.+.|+..|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 33455555555555433 556666666677777777777777777777664311 123455
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
+++++|...|+-||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=54.53 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=45.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
+...+...|++++|.++|+-+.... +.+..-|-.|..++-..|++++|+..|.......+. |...+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3334445555555555555555444 444445555555555555555555555555544432 44444445555555
Q ss_pred cCChhHHHHHHHHhH
Q 003353 283 KGLPYKAFEIYESME 297 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~ 297 (827)
.|+.+.|.+.|+..+
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.029 Score=54.22 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
...+..+...+...|++++|...|++.++... .++ ....+..+...+.+.|++++|...+++..+..+. +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE--DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 34667777777888888888888888876541 011 2457778888888888888888888887775433 5666666
Q ss_pred HHHHHHHcCChhHHHH
Q 003353 276 LMTLFLNKGLPYKAFE 291 (827)
Q Consensus 276 li~~~~~~g~~~~A~~ 291 (827)
+...+...|+...+..
T Consensus 112 lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 112 IAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHcCChHhHhh
Confidence 7777777666544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0085 Score=58.14 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 391 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
-+-|++++++|...|+.||..|+..+++.+++.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3446666666666666666666666666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.14 Score=52.48 Aligned_cols=80 Identities=6% Similarity=-0.014 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY---NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
...+-.....+.+.|++++|.+.|+++.... |.+..+. -.++.+|.+.+++++|...|++..+..+......|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 3334344555667788888888888887765 3333333 44567777788888888888887776554333344
Q ss_pred HHHHHHH
Q 003353 274 NVLMTLF 280 (827)
Q Consensus 274 n~li~~~ 280 (827)
-..+.+.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0013 Score=54.98 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 211 RDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 211 g~~~~A~~l~~~m~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
|+++.|+.+++++.+.. +. +...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHH----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHC----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 45555555555555543 21 222333355555555555555555544 211111 22222233445555555555
Q ss_pred HHHHHH
Q 003353 289 AFEIYE 294 (827)
Q Consensus 289 A~~~~~ 294 (827)
|+++|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.19 Score=47.41 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDTQS 272 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~ 272 (827)
-|+...-..+..++.+.|++.||...|++....-. ..|....-.+.++....+++..|...++++.+..+. ....+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 45655666777788888888888888888776554 667777777777777788888888888777664321 12223
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
--.+.+.|...|.+.+|...|+..... -|+...-......+++.|+.+++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345566777777777788878777764 344443333334456666666555433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=53.88 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCc-h-HhHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSV-D-VSASDVLMVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~-~-~~~~~li~~y~~~g~~~~A~~~~~~ 539 (827)
|+++.|+.+++++.+..+.. + ..+..+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444433311 1 1233344444444444444444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.47 Score=48.54 Aligned_cols=50 Identities=10% Similarity=-0.107 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 489 LLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
-|.+.|.+..|..-++.+++.-+... .....++.+|.+.|..++|.++..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444555555555555544322211 133444445555555555554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.048 Score=52.69 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID--TQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+...+...|++++|...|++..+....+. ...|..+...+.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444445555555555554443322111 23344444444444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.016 Score=58.89 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...+++.+|+..|..+.... +.|+.-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCc
Confidence 345678999999999999976 5788888999999999999999999999999987 8888999999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+++|++.|++.++.. |+-.+|-.
T Consensus 165 ~~~A~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccC--CCcHHHHH
Confidence 999999999998764 55555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.025 Score=59.36 Aligned_cols=82 Identities=11% Similarity=0.196 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP---TPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
+.+.|.++|+...+. +..+...|..-++.+.+.|+.+.|..+|++.... +.+ ....|...+.-=.+.|+.+.+.+
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444432 2223344444444444444444444444444432 111 11245555555555555555555
Q ss_pred HHHHHHH
Q 003353 467 LYNSMTS 473 (827)
Q Consensus 467 l~~~m~~ 473 (827)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.081 Score=60.31 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 305 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445554444445566666666666666544 35556666666666666666666666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.028 Score=54.03 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444555555555555555554331111 1224445555555555555555555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.026 Score=59.19 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---FNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 286 ~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.+.|..+|+...+. +..+...|...++.+.+.++.+.|..+|++.... +.++ ...|...++.=.+.|+++.+.++
T Consensus 52 ~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 52 PKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444433 2333444444444444444455555555444433 1111 13455555555555555555555
Q ss_pred HHHHHh
Q 003353 363 YMEMQG 368 (827)
Q Consensus 363 ~~~m~~ 368 (827)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0067 Score=48.21 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=34.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
.+.|++++|+++|+++.... |.+..++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777777776665 666666666777777777777777777666654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.08 Score=47.31 Aligned_cols=89 Identities=22% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---chHhHHHHHHHHHHc
Q 003353 453 EMHASSGQVDSAMKLYNSMTSAGLRPG--LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS---VDVSASDVLMVYIKD 527 (827)
Q Consensus 453 ~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~y~~~ 527 (827)
.++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..++++.....+. .......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556666666666666666555433 224444555666666666666666666654333 112222233355556
Q ss_pred CCHHHHHHHHHHHh
Q 003353 528 GSVDHALRWLRFMG 541 (827)
Q Consensus 528 g~~~~A~~~~~~m~ 541 (827)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.18 Score=57.51 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 512 (827)
+...|.++.-.....|++++|...+++..+ +.|+...|..+...+...|+.++|.+.++++...++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345555555555556777777777777766 4466666666666677777777777777776665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0094 Score=47.51 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHh
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLD 263 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 263 (827)
+..|..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665 556666666666666666 56666666666554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.1 Score=46.65 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPG--DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~--~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...++..+|+.++|+.+|+.+.... .... ...+-.+...+...|++++|..++++...... +.+.+......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHH
Confidence 3445555666666666666665542 1111 22444555666666666666666666655431 001123333334445
Q ss_pred HHHcCCHHHHHHHHHHhH
Q 003353 245 LAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~ 262 (827)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555566666666554444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.083 Score=54.07 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhHhCCCCCCHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD---KLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
-|...|-.|..+|.+.|+++.|...|.+..+.. +++...+..+..++.... .-.++..+|+++...++. |+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 344444444555555555555555554444443 444444444444433321 233444444444443332 444
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+...|...+...|++.+|...++.|.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444444444444444444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.47 E-value=2.4 Score=48.64 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~ 526 (827)
+.+--+.-+...|+..+|.++-.+.. -||...|---+.+++..+++++-+++-+... +..-|...+.+|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHh
Confidence 34444555566677777777766654 3677777777777777777776665544333 23345555667777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
.|+.++|.+.+-+... . . -...+|.+.|++.+|.++--+
T Consensus 757 ~~n~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHHHHH
Confidence 7777777777765431 1 1 223566777777777665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.6 Score=49.32 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=122.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCHHHHHHHHHHHHHcCChh
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
--|++++|.++|-+|-+++. -|..+.+.|++-...++++.--.. .-+.-..+|+.+...++....|+
T Consensus 746 ~~g~feeaek~yld~drrDL------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhcchhHhhhhhhccchhhh------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999988877652 567788889888887777542110 00112367888888888888899
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+|.+.|..-... ...+.++.+..++++-..+-..+ +.+....-.+.+++...|.-++|.+.|-+--
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 998888765321 23455666666666555444433 4445667778888889999888888775433
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHhcCChhHHHHHH
Q 003353 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT--------------MIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 368 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--------------~li~~~~~~g~~~~A~~~~ 433 (827)
.|. ..+..|....++.+|.++-+...- |...|.- --|..+.+.|+.-+|-+++
T Consensus 880 ----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 880 ----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred ----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 222 234567777788888777655321 2222221 1245566777766666666
Q ss_pred HHHHH
Q 003353 434 TDMER 438 (827)
Q Consensus 434 ~~m~~ 438 (827)
.+|-+
T Consensus 947 ~qmae 951 (1189)
T KOG2041|consen 947 SQMAE 951 (1189)
T ss_pred HHHhH
Confidence 66653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=46.56 Aligned_cols=55 Identities=13% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
..+.+.|++++|.+.|+++++.. |.+..++..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555554443 44444444444455555555555554444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.032 Score=58.57 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCC-CCH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKT----MGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGS----SGIR-TNN 549 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~-p~~ 549 (827)
..|..|.+.|.-.|+++.|+..++.-++ .|-+.. ..+..+..++.-.|+++.|.+.++.... .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777778899999888775433 232222 2567788889999999999998886543 2211 224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 550 FIVRQLFESCMKNALYESAKPLLETYVE----SA-AKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 550 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.+.-+|.+.|.-..+++.|+..+.+=+. .+ ..-....+.+|.++|...|..++|..+.+.-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4555677777777888888888876432 11 1234568889999999999999998876653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.8 Score=46.06 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
|.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++-.. + -+++-|-.++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCCCH
Confidence 344444555555444443332 24555555555555555555544443221 1 1334455555555555555
Q ss_pred hHHHHHHHH
Q 003353 462 DSAMKLYNS 470 (827)
Q Consensus 462 ~~A~~l~~~ 470 (827)
.+|..+...
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555554444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.039 Score=57.96 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=34.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (827)
..-+++.|+......+|+..++.|..+...-..+|..|..+|.-.+++++|.+..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3456777777777777777777664333333445666666677777777776653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=43.90 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 003353 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL----- 487 (827)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li----- 487 (827)
.+.++..+.-.|.+.-...++++.++...+.+++....|...-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555555666666666666665555566666666666666666666666666555422222222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..+...+++.+|...+.++...+....+..++-.....-.|+..+|++..+.|.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233344555555555555554443333333322222234445555555555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.02 Score=45.36 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.2
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
.+.|++++|++.|+++.+..+. +...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4567777777777777766554 6667777777777777777777777777764 3554444443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.019 Score=45.10 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=37.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+...+.+.|++++|...|+++.+..+. +...|..+..++...|++++|...|++.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677777777777777766543 566666677777777777777777776655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.4 Score=47.64 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 267 (827)
.+-.....+.+.|++++|.+.|+.+.... +..+-...+.-.++.++-+.|++++|...+++..+.-+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34444556677888888888888887664 122334456666777888888888888888887765443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.5 Score=44.98 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 495 (827)
.|.-+...|+...|.++-.+.. + |+..-|-..+.+|+..+++++-.++-.. +-.+.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444444555544444433321 1 3455555555555555555544443221 1122444555555555555
Q ss_pred HHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 496 ~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
..+|..+... .....-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHH
Confidence 5555544433 1113344455555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=1 Score=44.68 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchH---hHHHHHHHHHHcCCHHHH
Q 003353 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDV---SASDVLMVYIKDGSVDHA 533 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~li~~y~~~g~~~~A 533 (827)
+..-|.+.|.+..|..-++.+++.-+.... ....++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566666666666666666665433321 344455566666655533
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.032 Score=44.35 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-SVDHALRWLRFMG 541 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~ 541 (827)
+|..+...+...|++++|+..|++.++..+.....+..+..+|.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443333334444444444444 3444444444433
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.82 Score=51.08 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
+..+...+..-+.+...+..|-++|..|-. ...+++.....+++.+|..+-+...+ ..||+ |..-.+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHH
Confidence 334444445555556777788888887754 23467778888888888888877766 44553 333445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
-++...++++|.+ +|.+.|+-.+|.++++++...
T Consensus 813 wLAE~DrFeEAqk---------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK---------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH---------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5566666666654 445667778888888877643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
.|..++...|++.+|...|++...--..-|....-.+.++....+++..|...++++
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333444444444444444444333222223333333333333444444444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.5 Score=42.38 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-----LIE 383 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~ 383 (827)
+.+++.+...|.+.-...++.+.++.+.+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 445555555566666666666666665555566666666666666666666666665543211222222222 222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
.|.-.+++.+|...+++....... |....|.-.-+..-.|+..+|.+.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344555555555555443322 333333322223334555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.17 Score=47.16 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-----ERNFRPSFNI 342 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 342 (827)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555556666666666666665542 2245566666666666666666666665553 2355565544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=3.5 Score=43.71 Aligned_cols=311 Identities=15% Similarity=0.093 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--HHHcCCHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN--ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY--LAKADKLE 252 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~--~~~~g~~~ 252 (827)
+..+.+.|...++.. .|..|-.++. -.|+-..|.++-.+..+.- ..|....-.|+.+ -.-.|+++
T Consensus 69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~ll----ssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLL----SSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhh----hccchHHHHHHHHHHHHhcCchH
Confidence 334567777666543 3555555553 5678888888877765443 3444444444443 34569999
Q ss_pred HHHHHHHHhHhCCCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSY----NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~----n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
+|.+-|+.|.. |..+- ..|.-...+.|..+.|...-++.-.... --...+...+...|..|+|+.|++++
T Consensus 138 ~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 138 DARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 99999999986 33332 2333334467888888888877765422 23567888999999999999999999
Q ss_pred HHHHHcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 329 QEMKERN-FRPSFNI--FASLVDSMG---KAGRLDTSMKVYMEMQGCGHRPSAPM-YVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 329 ~~m~~~g-~~p~~~t--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.-+... +.+++.- --.|+.+-+ -..+...|...-.+..+. .||.+- -..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8876543 3344321 122222211 123455666665555543 566442 333457889999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
=+....|+.. .+-.+.+.|+. +..-+++..+. .++| +..+..++..+-...|++..|..--+...+ ..|.
T Consensus 290 WK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr 361 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR 361 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence 8876666542 22234455543 33333333311 1223 556677778888889999988887777766 5788
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCch
Q 003353 480 LSTYTALLTLL-AKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 480 ~~t~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
...|..|.+.- +..|+-.++.+.+.+.++..-.|.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 88888887754 456999999999999998765555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.43 Score=49.01 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
|...|-.|...|...|++..|...|.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~ 183 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNAL 183 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.29 Score=50.54 Aligned_cols=98 Identities=10% Similarity=0.001 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR-T-NNFIVRQLFE 557 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~ 557 (827)
|...+..+.+.|++++|...|+.+++..+... ..+..+...|...|++++|...|+.+.+.-.. | ....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44433333445666666666666665544332 24455556666666666666666666542211 1 1222223344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC
Q 003353 558 SCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
.+...|+.++|...|+++++.-+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 45566666666666666655433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.054 Score=43.60 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
..+.+.+++++|.+.++.++..+ |.+...+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 44566667777777777766665 6666666666666677777777777666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.27 Score=50.80 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSY 273 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~ 273 (827)
.|...+..+.+.|++++|...|+.+++.. |.+ ..++--+...|...|++++|...|+.+.+.-+. .....+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444433344566666666666666554 222 235555666666666666666666666543211 122333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
-.+...+...|+.++|.++|++.++
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555566666666655554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=4.5 Score=47.09 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=25.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 603 (827)
..+.+..+++.+..+.+..-+ . |...|-.+++.+++.+..++-
T Consensus 713 ~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~ 755 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDC 755 (933)
T ss_pred HHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhH
Confidence 445566666666666655422 2 666777777777776654433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.5 Score=41.08 Aligned_cols=90 Identities=9% Similarity=-0.029 Sum_probs=65.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
..-+.+.|++++|..+|.-+...+. -|..-|..|..++-..+++++|...|..+...+.............|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3445677888888888887776322 134445566666667888888888888887766554556677778888888888
Q ss_pred HHHHHHHHHhh
Q 003353 532 HALRWLRFMGS 542 (827)
Q Consensus 532 ~A~~~~~~m~~ 542 (827)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.05 E-value=4.1 Score=44.00 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
.|+.++|++++..+......++..+|..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555533333344444554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.6 Score=44.38 Aligned_cols=76 Identities=9% Similarity=-0.030 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSD---CKIDTQSYNVLMTLFLN---KGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~n~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
.++-.|....+++..+++.+.+.... +......-....-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666666666666665431 00011111122334444 5666666666666544444556666666665
Q ss_pred HH
Q 003353 314 SL 315 (827)
Q Consensus 314 ~~ 315 (827)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4 Score=40.03 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGC-GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE- 418 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~- 418 (827)
..+......+...+++..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444455555555555555555554431 112233344444444555555555555555554432222 111111111
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcC
Q 003353 419 SHAKSGKLDIAMSIFTDMERAGF--LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG--LSTYTALLTLLAKRK 494 (827)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g 494 (827)
.+...|+++.|...+.+...... ......+......+...++.++|...+.+.... .++ ...+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 44445555555555555433111 011222222222234444555555555544442 122 233333333444444
Q ss_pred CHHHHHHHHHHHHH
Q 003353 495 LVDVAAKILLEMKT 508 (827)
Q Consensus 495 ~~~~A~~l~~~m~~ 508 (827)
.++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.97 E-value=6.6 Score=42.49 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHH
Q 003353 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y 524 (827)
.+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-++ .|+..-|..+|+.-...-.......+..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455566666666666777777777777766 4566667777776554 35666677777665554333333344555566
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 525 IKDGSVDHALRWLRFMGSSGIRTN--NFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
...++-+.|..+|+..+++ +.-+ ..+|..++.--.+-|+...+..+=++|.+.
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6677777777777755432 1112 345666666666667776666666666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.15 Score=47.65 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
..++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444444332 4444444555555555555555444444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=9.7 Score=43.97 Aligned_cols=328 Identities=12% Similarity=0.061 Sum_probs=168.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
+++-+...+.+..|+++-..+...-.+ +...|.....-+.+..+ -+++++..++=..... -...+|..+.+-.-.+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 455566666677777666655432111 13444444444544421 1223333333222212 2344566666666667
Q ss_pred CCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFR----PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~----p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 394 (827)
|+.+.|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+... -+...+...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhh
Confidence 7777777666543222110 11222344455556667766666666555532 1222222111 233445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHH----HcCCCCCHHHHHHHHHHHHHcCC---------
Q 003353 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI-FTDME----RAGFLPTPSTYSCLLEMHASSGQ--------- 460 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~-~~~m~----~~g~~p~~~t~~~li~~~~~~g~--------- 460 (827)
..+|.+..+.. |..+ +-+.|-...+...+-.+ ++... ..|..|+. ....+.+.+...
T Consensus 592 ~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHH
Confidence 55555544321 1111 11222222221111111 11100 11222222 222333333322
Q ss_pred -HhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHHHH
Q 003353 461 -VDSAMKLYNSMTS-AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537 (827)
Q Consensus 461 -~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~~~ 537 (827)
..+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. + || ..|.--+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---i-pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---I-PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---C-cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1222333334433 2333444566667777888899999988766543 2 44 46667788999999999988877
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+.+.. +.-|.-...+|.+.|+.++|.+.+-+.-. .. -...+|.++|++.+|.++-
T Consensus 739 kskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 739 KSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66542 33455566899999999999999987532 11 4667899999999987763
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.8 Score=47.05 Aligned_cols=216 Identities=15% Similarity=0.147 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCC
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLF---------QEMKERNFRPSFNIFASLVDSMGKAGRLD--TSMKVYMEMQGCGH 371 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~g~ 371 (827)
|..+.+.+=+..|...|.+++|.++- +.+... ..+.--++..=++|.+..+.. +...-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44445555666778888888876542 111111 112234555556777766544 33334567777887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH------------HHHHHc
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF------------TDMERA 439 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~------------~~m~~~ 439 (827)
.|+.... ...++-.|++.+|-++|.+- |.. |..+.+|.....+|.|.+++ ++--+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~- 698 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD- 698 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-
Confidence 7876643 34556677788888777643 221 11233333333333333333 22111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYN------SMTSAGL---RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~---~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
..-++.-=.+...++...|+.++|..+.- -+.+-+- ..+..+...+...+.+...+..|.++|..|-.
T Consensus 699 -WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 699 -WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred -HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 00011111123445556677777765532 1111111 12344555555556667777788888877754
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..+++++....+++++|..+-++..+
T Consensus 776 ------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 776 ------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ------HHHHhhheeecccchHhHhhhhhCcc
Confidence 34567788889999999998887764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.69 Score=50.52 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT---QSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|+.++|++.+++.++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555666666666666666666655554322 11 2455666666666666666666666655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.42 Score=52.16 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
+.+...|+.+..+|.+.|++++|+..|++.++.. |.+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999886 6655 45999999999999999999999999874
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.2 Score=50.34 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHhHhCC---ccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVL-MTLFLNKGLPYKAFEIYESMEKGE---CSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
..+.|.++++.+.++- |+...|... .+.+...|+.++|++.|++..... .+.....+--+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3445555555554432 333333221 223333455555555555433210 0112223333444455555566666
Q ss_pred HHHHHHHHc
Q 003353 326 KLFQEMKER 334 (827)
Q Consensus 326 ~~~~~m~~~ 334 (827)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.46 Score=42.93 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLL 452 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li 452 (827)
.|+..+..+++.+|+..|++..|.++.+...+ .+++.+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444444444444444444444444444332 23333344444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.71 Score=51.47 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
...+.++.-+-+.|..+.|+++-.+-. .-.....++|+++.|.++.++. .+...|..|.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg 354 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHH
Confidence 345566666666666666666543322 1234455666666665554322 2555666666
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 357 (827)
+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+....+|- +|....++.-.|+++
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HH
T ss_pred HHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHH
Confidence 666666766666666666543 44455556666666666666666665552 444444455556666
Q ss_pred HHHHHHH
Q 003353 358 TSMKVYM 364 (827)
Q Consensus 358 ~A~~~~~ 364 (827)
+..+++.
T Consensus 420 ~cv~lL~ 426 (443)
T PF04053_consen 420 ECVDLLI 426 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=5.8 Score=38.82 Aligned_cols=222 Identities=18% Similarity=0.124 Sum_probs=129.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHR-PSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555544321 13456666777777788888888777776642 22334555666666667777777788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLE-MHASSGQVDSAMKLYNSMTSAGLRP----GLSTYTALLTLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~li~~~~~~g~~~~A~~l~~~ 505 (827)
+.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777777643332 122222222 67777778888877777755 222 223333334445566777777777777
Q ss_pred HHHCCCC-chHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 506 MKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 506 m~~~g~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
..+.... ....+..+...+...++.+.|...+......... ....+..+...+...|..+++...+.+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7765544 3345566666667777777777777766643322 1222333333334555666666666666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.2 Score=40.20 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
|.+.+++++|.++++.++..++.....+......|.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444444444444433333334444444444444444444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=9 Score=40.79 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=180.7
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHhHhCCccCCHHHH----HHHHHHHHHcCCH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF--LNKGLPYKAFEIYESMEKGECSLDGSTY----ELMIPSLAKSGRL 321 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~li~~~~~~g~~ 321 (827)
.|+-..|.++-.+..+. +.-|....-.++.+- .-.|+++.|.+-|+.|... ..|- ..|.-..-+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 46677777766554321 112444444555443 3479999999999999873 3443 3344445678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHH---cCCHHHHH
Q 003353 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAPM--YVSLIESYAK---AGKLDTAL 395 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~A~ 395 (827)
+.|...-+..-+.- +.-...+...+...|..|+++.|+++.+.-.... +.+++.- -..|+.+-.. ..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999888877654 3334778899999999999999999998876532 3455432 2233332221 23556666
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-
Q 003353 396 RLWDEMRIAGFRPNFGLF-TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS- 473 (827)
Q Consensus 396 ~l~~~m~~~g~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~- 473 (827)
..-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....|+. +. +..+.+.|+ .++.-+++..+
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 65555544 45554332 22356789999999999999999987555543 22 222344454 44444444333
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHh-HHHHHHHH-HHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 474 AGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS-ASDVLMVY-IKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 474 ~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~li~~y-~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
..++|| ..+...+..+-...|++..|..--+...+. .|... |.-|.+.- ...|+-.++..++.+.+...-.|.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 125565 456667777888899999888777766653 44443 33444433 345999999999999887655544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.09 E-value=3 Score=42.80 Aligned_cols=146 Identities=13% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++.+|..+|+...... +.+..+--.++.+|...|+.+.|..++..+...--.........-|..+.+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 445678888899999998888876 6667777788888888999999999888887543222222222334455555
Q ss_pred CChhHHHHHHHHhHhCCccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCH
Q 003353 284 GLPYKAFEIYESMEKGECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~ 356 (827)
....+..++-.+.... | |...-..+...+...|+.++|.+.+-.+.+++. --|...-..+++.+.-.|.-
T Consensus 217 a~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 217 AATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred hcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 5555555555555443 3 555666677777788888888777666654421 23334455555555555533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.3 Score=38.00 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
...++.+.+.|+-++-.+++.++.+. -++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555432 234555555555566666666666666665555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.69 Score=43.34 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=40.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
-..|++++|..+|.-+...+ +-+..-|..|...+-..+++++|+..|......+.. |....-....+|...|+.+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 34555555555555554443 334444444555555555555555555444332221 3333333444455555555
Q ss_pred HHHHHHHHhHh
Q 003353 288 KAFEIYESMEK 298 (827)
Q Consensus 288 ~A~~~~~~m~~ 298 (827)
.|...|+..+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 55555544443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.68 E-value=8.3 Score=38.47 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
.|.....+|-...++++|...+.+..+. .+.+...|. ..+.++.|.-+.++|.+.. --+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444445566666677766666555421 011211111 2233455555555554421 11233455566677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA---G--LRPGLSTYTALLTLLAKRKLV 496 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~pd~~t~~~li~~~~~~g~~ 496 (827)
.+|..+-|-..+++.-+. ..+-+.++|+++|++...- + .+--...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666654431 2233455555555554431 0 000112233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 497 DVAAKILLEMKTM----GYSVD--VSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 497 ~~A~~l~~~m~~~----g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++|-..+.+-... .--++ ..+...|..|....++..|.++++.-.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 5555444332211 01111 134445555556666666666666533
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.16 Score=41.38 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
++..+..++...|++++|.+.+++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.85 Score=41.20 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLL 490 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~ 490 (827)
..|+..+..+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566666777777777777777777776666552 4555566666666633
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.6 Score=42.47 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 655 ARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 655 ~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
++|+| |+..|-..|++++|..+|+.+...++
T Consensus 238 EtyFY--L~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFY--LGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHH--HHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35664 99999999999999999999876654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.41 Score=38.97 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ch--HhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTM----GYS-VD--VSASDVLMVYIKDGSVDHALRWLRFM 540 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-~~--~~~~~li~~y~~~g~~~~A~~~~~~m 540 (827)
+|+.+...|...|++++|+..+++.++. |.. +. .++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555544432 111 11 12334444445555555555544443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.56 E-value=13 Score=40.44 Aligned_cols=432 Identities=11% Similarity=0.071 Sum_probs=225.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVP---G-DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p---~-~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
+-+|...++..+|.++|.++-...--.| . ...-+.+++++... +.+.....+....+.. +......--..-
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~----~~s~~l~LF~~L 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF----GKSAYLPLFKAL 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc----CCchHHHHHHHH
Confidence 3456677888888888887766421111 1 12334566666644 5566666666665543 322322222223
Q ss_pred HHHHcCCHHHHHHHHHHhHhC--CCC------------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----CccCCH
Q 003353 244 YLAKADKLEMSYCCFKKVLDS--DCK------------IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECSLDG 305 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~ 305 (827)
.+-+.+.+.+|.+.+..-.+. +-+ +|..-=+..++.+...|.+.++..++++|... ...-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 345677888888877665543 211 12222356677788888898888888887654 334677
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcC--CHHHHHHH
Q 003353 306 STYELMIPSLAKSGR---------------LDAAIKLFQEMKER------NFRPSFNIFASLVDSMGKAG--RLDTSMKV 362 (827)
Q Consensus 306 ~t~~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g--~~~~A~~~ 362 (827)
.+|+.++-.+.+.-- ++.+.-...+|... .+-|.......++.-..-.- +..--+++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 888876555543211 12222222222211 12233333333333222111 11111222
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 363 YMEMQGCGHRPSAP-MYVSLIESYAKAGKLDTALRLWDEMRIAGFRP----NFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 363 ~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
++.-...-+.|+-. ....++..+.+ +.+++..+-+.+....+.+ =..++..++....+.++..+|.+.+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22222222344432 22333333333 5555555555443322111 13566777778888888888888877665
Q ss_pred HcCCCCCHHHH-------HHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHHhcCC-HHHHHH
Q 003353 438 RAGFLPTPSTY-------SCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLS-TYTALLT---LLAKRKL-VDVAAK 501 (827)
Q Consensus 438 ~~g~~p~~~t~-------~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~---~~~~~g~-~~~A~~ 501 (827)
... |+...- ..+.+..+. .-+...=+.++++.....+ |.. ....|+. -+.+.|. -++|.+
T Consensus 326 ~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 326 ILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred hcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 432 222211 112222221 1223334555666655332 322 2222322 3445555 788899
Q ss_pred HHHHHHHCCCCchHhHH---HHHH-HHHH---cCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHHcCCHHHH
Q 003353 502 ILLEMKTMGYSVDVSAS---DVLM-VYIK---DGSVDHALRWLRFMGSSGIRTN----NFIVRQLFES--CMKNALYESA 568 (827)
Q Consensus 502 l~~~m~~~g~~~~~~~~---~li~-~y~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~--~~~~g~~~~A 568 (827)
+++.+++-....-..-+ .++. +|.+ ...+.+-+++-+-+.+.|+.|- ...-|.|.+| +..+|++.++
T Consensus 402 LLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 402 LLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 98888874332222211 1121 3432 2334444444455556777653 3455555555 4578899888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003353 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 569 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~ 612 (827)
.-.-..+.+ +.|++.+|.-+.-++....++++|...+..++.
T Consensus 482 ~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 482 YLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 755555444 678999999998888888999999888876654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.53 E-value=4 Score=37.56 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=16.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+.+.+........++.+...+ +.+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~----~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN----SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC----ccchhHHHHHHHHHHH
Confidence 333333444444444444444333 2333444444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.5 Score=47.59 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
+++++++|...|+.||..+-..|++++++.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444455555555555444444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.33 E-value=3 Score=38.40 Aligned_cols=125 Identities=13% Similarity=0.249 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
..++..+.+.+........++.+...+. .+....|.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3566666677777888888887777664 46677788888887653 3444444442 12334445566677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA-GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
+.++++.-++.++.. +...++.+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777766666655421 22233333333 5666666655541 24445655555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=7.1 Score=36.81 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH-HH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS-YN 274 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~n 274 (827)
+.+.|...++ +++.+..++|+.-|.++.+.|.. .-.+-..-.........|+...|...|+++-.....|-+.- .-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g--~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG--SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4456665554 56777888888888888887751 11122333344556677888888888888776544444331 11
Q ss_pred HH--HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 275 VL--MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 275 ~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
.| .-.+..+|.+++...-.+.+-..+-+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 11 12344567777777777766655544444455566666677788888888877776543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.5 Score=40.47 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 394 (827)
....|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 455566666666666665543 2223444456666666666666666666654322111111222223333333333333
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 395 LRLWDEMRIAGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 395 ~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
..+-.+.-.. | |...--.+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333221 2 33444445555555555555555544444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.1 Score=47.82 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
.-.++++++.+..+.-.-.. .-...-.+.++.-+-+.|..+.|+++-.+-.. -.+...++|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34566666665554111000 11133455666666666666666665543221 134445566666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
++-++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 544322 2455666666666666666666666655432 3444445555555555555554444433
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
- ++....++...|+.++..+++.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2222233333455555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=2.2 Score=38.06 Aligned_cols=91 Identities=24% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCH---HHHHHHHHHH
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDT---QSYNVLMTLF 280 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~n~li~~~ 280 (827)
-+++..|+.+.|++.|.+.+..- |....+||.-..++.-.|+.++|++=+++..+. |.+ .. .+|-.-...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 34556666666666666666554 556666666666666666666666666655542 222 21 1222233345
Q ss_pred HHcCChhHHHHHHHHhHhCC
Q 003353 281 LNKGLPYKAFEIYESMEKGE 300 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g 300 (827)
...|+.+.|..-|+...+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 55566666666666555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.9 Score=45.54 Aligned_cols=85 Identities=13% Similarity=-0.019 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI---RTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
...+.|.++++.+.+.-++.......-...+...|++++|++.|++..+... +.....+--+...+.-.+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3445555555555543222111222223344455555555555554432110 0112222233334445555555555
Q ss_pred HHHHHHHC
Q 003353 571 LLETYVES 578 (827)
Q Consensus 571 ~~~~m~~~ 578 (827)
.|.++.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 55555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.56 Score=47.23 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~ 329 (827)
.++-....++.|.+.|++.|..+|+.|+..+-+..- .|.. .+..+.--|=+ +-+-+.++++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vfQ~~F~HYP~--QQ~C~I~vLe 147 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VFQKVFLHYPQ--QQNCAIKVLE 147 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HHHHHHhhCch--hhhHHHHHHH
Confidence 344444556777777888888888877776643221 1111 11111111111 1233566667
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 330 EMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 330 ~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+|...|+.||..+-..|++++.+.+-
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777766667776666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.03 E-value=7.6 Score=40.92 Aligned_cols=127 Identities=14% Similarity=0.270 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcC---
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHAS--S----GQVDSAMKLYNSMTSAGL---RPGLSTYTALLTLLAKRK--- 494 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~A~~l~~~m~~~g~---~pd~~t~~~li~~~~~~g--- 494 (827)
++...+++.|.+.|+.-+..+|-+....... . ....+|..+|+.|.+... .++...+..++.. ..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445555666666666555554442222222 1 124567777777776431 2445555555543 222
Q ss_pred -CHHHHHHHHHHHHHCCCCchHh--HHHHHHHHHHc---CCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003353 495 -LVDVAAKILLEMKTMGYSVDVS--ASDVLMVYIKD---GSVDHALRWLRFMGSSGIRTNNFIVRQL 555 (827)
Q Consensus 495 -~~~~A~~l~~~m~~~g~~~~~~--~~~li~~y~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (827)
-.+.++.+|+.+.+.|+..... +.+-+.++... ....++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2345566666666666654422 11112122111 1144666667777777766665555433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.92 E-value=4.5 Score=36.24 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
....++.+...|+-+.-.+++.++.+.+-.+......+..+|.+.|+..+|.+++.++.++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455566666666666666666543333333445556666666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=2.7 Score=37.50 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch---HhHHHHHHHHHHcC
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVD---VSASDVLMVYIKDG 528 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~---~~~~~li~~y~~~g 528 (827)
+++..|+.+.|++.|.+.+. +.| ....||.-..++.-.|+.++|.+-+++.++. |.+.. ..+..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 232 3456666666666666666666666666653 22211 12334444566677
Q ss_pred CHHHHHHHHHHHhhCC
Q 003353 529 SVDHALRWLRFMGSSG 544 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~ 544 (827)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=12 Score=37.82 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..|+ -+..-.+.|++++|.+.|+.+.... +..+-...+.-.++.++-+.+++++|+..+++....-+......|-.-|
T Consensus 36 ~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 36 ELYN-EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444 3445678899999999999988664 2334456677777888888999999999998888766554445566556
Q ss_pred HHHH
Q 003353 278 TLFL 281 (827)
Q Consensus 278 ~~~~ 281 (827)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 6655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.68 E-value=21 Score=40.36 Aligned_cols=135 Identities=12% Similarity=0.198 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...|++++.---.....+.+...++.++..- |...--|......=.+.|..+.+.++|++-.+ ++...+..|.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky----Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY----PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 344566666655555555567777777777654 66666777777777888888888888888776 4455677777
Q ss_pred HHHHHHHH-cCChhHHHHHHHHhHhC-Ccc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 275 VLMTLFLN-KGLPYKAFEIYESMEKG-ECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 275 ~li~~~~~-~g~~~~A~~~~~~m~~~-g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+.-+.. .|+.+.....|+..... |.. .....|...|.--..++++.....++++.++.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66554443 56677777777777653 221 23445666777667778888888888888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.1 Score=45.74 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM-IIES 419 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-li~~ 419 (827)
.+++.+.-+|.+.+++.+|++..++.+..+ ++|+-..-.-..+|...|+++.|...|+++.+. .|+-..-+. ++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456667777777777777777777777665 556666666677777777777777777777764 343333333 3332
Q ss_pred HHhcCC-hhHHHHHHHHHHH
Q 003353 420 HAKSGK-LDIAMSIFTDMER 438 (827)
Q Consensus 420 ~~~~g~-~~~A~~~~~~m~~ 438 (827)
-.+... .+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 222222 2233555665553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.4 Score=38.83 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+..-.....+.|++++|.+.|+.+...- +.++-...+.-.|+.+|.+.+++++|...+++.++..+..--+-|-..+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33334455677888888888888887654 22244556677788888888888888888888888766544455655555
Q ss_pred HHHH
Q 003353 279 LFLN 282 (827)
Q Consensus 279 ~~~~ 282 (827)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.37 E-value=7.7 Score=42.85 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
.+..++-+.|+.++|.+.+.+|.+.. ...+......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444555666666666666665432 112233555566666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.2 Score=45.64 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 521 LMVYIKDGSVDHALRWLRFMGSSG-IRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
....-+.|+.++|++.|++|.+.. ...+..+...|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344555555555555554322 1112223444455555555555555555554
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.9 Score=46.17 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH-HHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE-LMIP 313 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~li~ 313 (827)
..+++.|...|.|.+++.+|++.-++.+..+.. |+...-.-..++...|+++.|+..|+++++. .|+..... .++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 345666777777777777777777777766543 6666666677777777777777777777763 44444333 3333
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 003353 314 SLAKSGRL-DAAIKLFQEMKE 333 (827)
Q Consensus 314 ~~~~~g~~-~~A~~~~~~m~~ 333 (827)
+-.+.... +...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 33333333 334666666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.8 Score=44.02 Aligned_cols=96 Identities=13% Similarity=-0.069 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC-HHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGI-RTN-NFIVRQLF 556 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~ll 556 (827)
.|+.-+.. .+.|++..|++.|...++..+... ..++.|...+...|++++|..+|..+.+.-. .|. ...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 345667777777777777655443 2456677777777777777777777665321 121 23444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 003353 557 ESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666667777777777766654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=9.6 Score=35.97 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH---HHHHH
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRV 241 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~---~~~~l 241 (827)
...--+.+.+..++|+.-|..+.+.. +..-+ -..-.+.....+.|+...|...|+++-.... .|-.. .--.-
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlra 138 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHH
Confidence 33334456788899999999887753 32222 2233455667889999999999999876643 22221 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC
Q 003353 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304 (827)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 304 (827)
.-.+...|.+++.....+.+...+-..-...-.+|.-+-.+.|++.+|...|.++......|.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 334567889999888888777655444455667787788899999999999999877544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.44 Score=33.92 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~l 241 (827)
+|..+...|.+.|++++|.++|+++++.. |.+..++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~----P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD----PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCCHHHHHHh
Confidence 44555555556666666666666665554 5555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=6.6 Score=43.23 Aligned_cols=117 Identities=11% Similarity=0.011 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPG-DECYVMLFDVLN---------ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~-~~~~~~li~~l~---------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+.|+.+|..+.......|+ ...|..+..++. ......+|.++.+..++.+ +.|..+...+..+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld----~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT----TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHH
Confidence 34589999999833222333 334444333322 1234467777888888777 788888888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
-.++++.|..+|++....++. ...+|........-+|+.++|.+.+++..+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888888888888776543 344555555555567888888888888655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.86 E-value=19 Score=37.95 Aligned_cols=129 Identities=16% Similarity=0.269 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHHhHhCCc---cCCHHHHHHHHHHHHHcCC-
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN--KG----LPYKAFEIYESMEKGEC---SLDGSTYELMIPSLAKSGR- 320 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~pd~~t~~~li~~~~~~g~- 320 (827)
+++...+++.|.+.|+..+..+|-+....... .. ...+|.++|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555666667777776666555442222222 11 23456667777765431 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 321 ---LDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKA-GR--LDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 321 ---~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
.+.+..+|+.+.+.|+..+.. -+.+-+-++... .. ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 344555666666655443222 111111122111 11 23455555566665555554444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=14 Score=36.24 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=98.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+.++|-+..|.-=|..+.... |.-+..||.+.--+...|+++.|.+.|+...+.+ |....+.-.-.-++--
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----p~y~Ya~lNRgi~~YY 145 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PTYNYAHLNRGIALYY 145 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC----CcchHHHhccceeeee
Confidence 344455666666666666666543 3345678888888888888888888888888776 5555544444444455
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~-p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
-|+++-|.+-|-..-+.++. |=...|-.++. +.-++.+|..-+.+--+ ..|..-|...|-.+.- |++. ...
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~ 217 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EET 217 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHH
Confidence 67788887777666655433 22334443332 23355555544332221 1244444443333321 1111 111
Q ss_pred HHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 327 LFQEMKERNFRPS-------FNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 327 ~~~~m~~~g~~p~-------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+++++.... ..+ ..||--|.+-|...|+.++|..+|+-...
T Consensus 218 l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 218 LMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222222211 111 23455566666666677777666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.57 E-value=20 Score=37.54 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCH---hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 447 TYSCLLEMHASSGQV---DSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 447 t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
+...++.+|...+.. ++|.++++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+..-.-++..+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 455566666665553 3455555555442 223 3344344555555677777777777777654334444443333
Q ss_pred HHH--HcCCHHHHHHHHHHHhhCCCCCCH
Q 003353 523 VYI--KDGSVDHALRWLRFMGSSGIRTNN 549 (827)
Q Consensus 523 ~y~--~~g~~~~A~~~~~~m~~~~~~p~~ 549 (827)
.+- .......|...++.+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 112234555555555544444443
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.56 E-value=16 Score=36.53 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.|..-..+|....++++|...+.+..+ +.+.|...|. ....++.|.-+.++|.+. .--+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 344444455555555555555544442 1111211111 112234444444444432 111223444555566
Q ss_pred HcCCHHHHHHHHHHHH
Q 003353 317 KSGRLDAAIKLFQEMK 332 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~ 332 (827)
.+|..+.|-..+++..
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 6666666655555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.49 E-value=42 Score=41.19 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
+..+.+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|+.+..++....-+.-..-..|+.-+...++
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHccc
Confidence 333444455666666666654432 12335566667777777766665543111111122456666667777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
.-+|-++..+.... |.. .+..|++...+++|+.+-..
T Consensus 1015 h~eAa~il~e~~sd---~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred chhHHHHHHHHhcC---HHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 77777776665531 111 12345566666666665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.34 E-value=21 Score=37.38 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLD---AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
++..++.+|...+..+ +|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655533 3444444443322 222344444555555566677777777776654
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.15 E-value=45 Score=40.93 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
+++++|+.-+.++. ...|.-.++.--+.|.+++|+.++..=.+. -...|.+-.+.+.....+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555554443 112333444445666677776665321110 1123333344444556666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST--YTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
+..-+ ..--+.+|..+|++.+|+.+..++.. .-|... -..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 54432 11235566677777777777776653 112221 245556666666666666666555431
Q ss_pred CchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 512 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
....+..|++...+++|.++-....
T Consensus 1029 -----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1233445566666667666655443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.13 E-value=27 Score=38.24 Aligned_cols=370 Identities=10% Similarity=0.105 Sum_probs=204.8
Q ss_pred HhcCChhHHHHHHHHHHHc--CCCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCHHH
Q 003353 208 NESRDFDGMLSLFDEMVHD--SSKN---------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQS 272 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~--~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 272 (827)
-+.+.+++|.+.+...... +... .-++...-+..+..+...|++.++..+++++... .+.-++.+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888888877655 2100 0123344466777888899999999888887653 34478888
Q ss_pred HHHHHHHHHHcC--------C-------hhHHHHHHHHhHhC------CccCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 003353 273 YNVLMTLFLNKG--------L-------PYKAFEIYESMEKG------ECSLDGSTYELMIPSLAKS--GRLDAAIKLFQ 329 (827)
Q Consensus 273 ~n~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~pd~~t~~~li~~~~~~--g~~~~A~~~~~ 329 (827)
||.++-.+.++= . ++.+.-...+|... .+.|.......++....-. .+..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888666665431 1 12222222222211 1223333333333322211 12222333333
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 330 EMKERNFRPSFN-IFASLVDSMGKAGRLDTSMKVYMEMQGCGHR----PSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 330 ~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
.-...-+.|+.. +...|+..+.+ +.+++..+.+.+....+. .=..++..++....+.++...|.+.+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333445432 22333333333 566666665555433221 12457888888899999999999988877653
Q ss_pred CCCCCHHHH-------HHHHHHHHh----cCChhHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHHcCC-HhHHHHHHHH
Q 003353 405 GFRPNFGLF-------TMIIESHAK----SGKLDIAMSIFTDMERAGFLPT-PSTYSC-LLEMHASSGQ-VDSAMKLYNS 470 (827)
Q Consensus 405 g~~pd~~t~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~-li~~~~~~g~-~~~A~~l~~~ 470 (827)
.|+...- ..+.+..|. .-+...=..++++....++... .+.|-. -..-+-+.|. -++|+++++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3332211 122233331 1123333455556655433211 122211 1123344455 8899999999
Q ss_pred HHHCCCCCCH-HHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCchH-----hHHHHHHH--HHHcCCHHHHHH
Q 003353 471 MTSAGLRPGL-STYTALL----TLLAK---RKLVDVAAKILLEMKTMGYSVDV-----SASDVLMV--YIKDGSVDHALR 535 (827)
Q Consensus 471 m~~~g~~pd~-~t~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~~~~-----~~~~li~~--y~~~g~~~~A~~ 535 (827)
..+ +.+.. ..-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|.. .-+.|.++ +...|++.++.-
T Consensus 406 il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 406 ILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 987 44433 2322222 23332 23344444555555667777653 23445553 457899999876
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590 (827)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 590 (827)
.-..+. .+.|++.+|.-+.-+.....++++|...|.. ++|+..++++=
T Consensus 484 ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 484 YSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 666665 4678999998887778889999999999987 46677777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=4.2 Score=42.28 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=69.6
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHH----HHHHHHHHHcCCHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY----ELMIPSLAKSGRLD 322 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~li~~~~~~g~~~ 322 (827)
-.|++.+|...++++.+.-+ .|..+++..=++|.-.|+.+.-...+++.... ..+|...| ....-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666667677777766443 36777777777777777777777777666543 12233222 22223345567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
+|.+.-++..+.+ +.|.-.-.++...+--.|+..++.+...+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777766666655 45555555666666666777776666544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.97 E-value=13 Score=43.75 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 003353 593 HLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 593 a~~~~g~~~~a~~l~~~l~~ 612 (827)
.+...|++++|.+.++.+.-
T Consensus 514 ~~~~~g~~~~AL~~i~~L~l 533 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLDL 533 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHHhCCC
Confidence 45567888888888877664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.90 E-value=37 Score=39.47 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHhHh-------CCccCCHHHHHHHHHHHHHc
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTL-----FLNKGLPYKAFEIYESMEK-------GECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~li~~~~~~ 318 (827)
..+|.+.++...+.| ++..-..+... +....+.+.|+..|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 355666666666544 22322222222 2234566777777776655 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCC
Q 003353 319 G-----RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA--KAGK 390 (827)
Q Consensus 319 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~ 390 (827)
. +.+.|..++.+..+.| .|+....-..+..... ..+...|.++|...-+.|. +...-+.+++-... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 2 5566777777777776 3443333222222222 2356677777777777662 22222222221111 2236
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 391 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
.+.|..++.+.-+.|. |-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777777762 222222222333333 666666666655555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.57 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
++..+...|.+.|++++|+++|+++.+..+. |...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4566777777777777777777777776554 555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.76 E-value=15 Score=34.91 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
+.++.+.+.++.|+...|..+|+.+.+.|++.. +.++.+.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 344445556667777777777777777776554 344455555566555554443322 2233344443344432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
=...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113555666677777777777776664321 112223345555555555544444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.76 E-value=5 Score=36.79 Aligned_cols=54 Identities=17% Similarity=0.064 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 491 AKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
.+.|++++|.+.|+.+...-+... .....|+.+|.+.|++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445666666666666665433322 234455666666666666666666666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=8.3 Score=42.46 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (827)
..+|+++-+.+.+.+ +-|+.+...+..++.-.++++.|..+|++....+ |....+|........-+|+.++|.+
T Consensus 320 ~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 320 AQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 344788888888876 5788888888888899999999999999999987 8888899888888999999999999
Q ss_pred HHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 257 CFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 257 ~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
.+++..+..+..-. ...-..++.|+..+ .++|+.+|-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 99997765443222 22333344666554 67788877544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=9.6 Score=39.73 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=107.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCHHHHH--HHHHHHHH
Q 003353 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYN--VLMTLFLN 282 (827)
Q Consensus 206 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~n--~li~~~~~ 282 (827)
.+...|++.+|-...+++++.. |.|..+++..=.+|.-.|+.+.-...++++... +......+|- .+.-++..
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 3456788888888888888876 888888888888999999988888888888753 2221222332 33344556
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C-CCCCHHHHHHHHHHHHhcCCHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER---N-FRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---g-~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.|-+++|.+.-++..+.+ +-|...-.++...+--.|++.++.++..+-... + +.....-|. ..-.+...+.++.
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEK 265 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhH
Confidence 889999999888887753 236667777888888889999998887654322 1 111112232 3335566789999
Q ss_pred HHHHHHHHH
Q 003353 359 SMKVYMEMQ 367 (827)
Q Consensus 359 A~~~~~~m~ 367 (827)
|+++|+.-.
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999997543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.8 Score=42.34 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-----CCccCCHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-----GECSLDGSTYE 309 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~ 309 (827)
..++..++..+..+|+++.+...++++....+. |...|..+|.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345555666666666666666666666665543 666666666666666666666666666543 35555555554
Q ss_pred HHHHH
Q 003353 310 LMIPS 314 (827)
Q Consensus 310 ~li~~ 314 (827)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.9 Score=43.19 Aligned_cols=78 Identities=8% Similarity=0.097 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCKIDTQS 272 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 272 (827)
.++..++..+...|+++.+...++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 477888999999999999999999999988 89999999999999999999999999998865 688898888
Q ss_pred HHHHHHH
Q 003353 273 YNVLMTL 279 (827)
Q Consensus 273 ~n~li~~ 279 (827)
+......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 8776666
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.42 E-value=15 Score=38.73 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCC---CH
Q 003353 377 MYVSLIESYAKAGKLDTALRLW-------DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLP---TP 445 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~-------~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~ 445 (827)
+|..+..+.++.|.+++++..- .+..+.. .-...|-.+..++.+..++.+++.+-..-.. .|..| .-
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 4555556666666666554322 1111110 0112334444455555555555554443332 12222 11
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--
Q 003353 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLR-----PGLSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD-- 514 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~-- 514 (827)
....++..++...+.++++++.|+...+---. .....+..|-..|.+..++++|.-+..++.+. +++.-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 22334566667777788888888877652111 12346777888888888888888776665432 22211
Q ss_pred ----HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 515 ----VSASDVLMVYIKDGSVDHALRWLRFMGS----SGIRTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 515 ----~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
...+.|..++...|+.-+|.+.-++..+ .|-++- ...+..+.+.|...|+.+.|..-+++..
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1345566678888888888888877654 342222 2344556667788888888887777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.40 E-value=36 Score=37.11 Aligned_cols=418 Identities=11% Similarity=0.100 Sum_probs=213.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
+++=+.+... +.|..+|..++.-|...+..++..+++++|..-. |--..+|..-+++-....++...+.+|.+
T Consensus 29 lrLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf----p~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 29 LRLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF----PIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC----ccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 5666655552 7788899999999999999999999999997654 66677898888888888999999999999
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHhHh-CCccCCHH-HHHHHHH---HHH------HcCCHHH
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLP------YKAFEIYESMEK-GECSLDGS-TYELMIP---SLA------KSGRLDA 323 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~------~~A~~~~~~m~~-~g~~pd~~-t~~~li~---~~~------~~g~~~~ 323 (827)
..... .+...|...+.--.+.+.. ....+.|+-... .++.|-.. .|+..+. ..- .+.++|.
T Consensus 102 CL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 88754 4577787777655443311 122334444333 34555433 3444333 222 2334566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH------HHHHHH---hcC----CHHHHHHHHHHHHh--CCCC----CCHHHHHH----
Q 003353 324 AIKLFQEMKERNFRPSFNIFAS------LVDSMG---KAG----RLDTSMKVYMEMQG--CGHR----PSAPMYVS---- 380 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~------li~~~~---~~g----~~~~A~~~~~~m~~--~g~~----p~~~~~~~---- 380 (827)
....+.+|....+..=...|+- =++-.. -.| -+-.|...+++... .|.. .+..++|-
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 6777777776543221122221 111110 011 13455556655542 2221 12223322
Q ss_pred -------HHHHHHHc-----CC-H-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 003353 381 -------LIESYAKA-----GK-L-DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 381 -------li~~~~~~-----g~-~-~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 446 (827)
.|.-=... |+ . ...--++++.... +......|----.-+...++-+.|.+....-... .|+..
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~ 336 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT 336 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh
Confidence 11111111 11 0 1111122222211 0111222222222223344555555444332221 12210
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH-----------------------------CCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTS-----------------------------AGLRPGLSTYTALLTLLAKRKLVD 497 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~-----------------------------~g~~pd~~t~~~li~~~~~~g~~~ 497 (827)
--+-..|.-..+.++....|+.... ....--...|...+++-.+...++
T Consensus 337 --~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 --MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred --eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 0111122222222222222222110 001112345566666666777778
Q ss_pred HHHHHHHHHHHCCC-CchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 498 VAAKILLEMKTMGY-SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 498 ~A~~l~~~m~~~g~-~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
.|..+|-++.+.++ .+++ .+.+++. |-..|+..-|.++|+--... ..-+.......+.-+...++-+.|..+|+..
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 88888888887773 3444 3344444 44457777777777754432 1122333344455566777888888888866
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 576 VESAAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 576 ~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
++. +.-+ ...|-.+|+.=..-|+...+..+-+.+...-|
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 543 2222 45677777776777777766666555554333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.36 E-value=49 Score=38.50 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHhHh-------CCCCCCHHHHHHHHHHH
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY-----LAKADKLEMSYCCFKKVLD-------SDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~n~li~~~ 280 (827)
..+|...++.....+. ......+..+ +....+.+.|...|+...+ .| +....+.+..+|
T Consensus 228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 4578888888887763 3333333333 3456789999999988876 44 334566777777
Q ss_pred HHcC-----ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 003353 281 LNKG-----LPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG--- 351 (827)
Q Consensus 281 ~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--- 351 (827)
.+.. +.+.|..++.+..+.|.+ +....-..+..... ..+...|.++|..+.+.|. ++ .+-.+..+|.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGL 374 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCC
Confidence 7743 567799999998887643 44433333322222 3567899999999999884 22 2222322222
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 352 -KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 352 -~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
-..+...|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.|..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 2347889999999998887 3332222233334444 7788887777777776643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=6.8 Score=39.89 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVL 276 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~l 276 (827)
.|+.-+. +.+.|++.+|...|...++.. ++..-...++--|...+...|++++|..+|..+.+.-++ .-..+.--|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 344555666666666666554 122223334444666666666666666666666553322 123445555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.....+.|+-++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 55566666666666666666553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.61 E-value=8.6 Score=44.93 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF--NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
...-|....+...++.|..+-+ ..+..++. .......+-+.+.|++++|...|-+-... +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 4445566666666666665432 22322221 11222233444567777777666555432 1221 234445
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 435 (827)
....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 5555555566666666666654 444445566666666666665555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.80 E-value=44 Score=36.04 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
+|..+...+.+.|.++.|...+.++.+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 444444444445555555444444443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.95 E-value=27 Score=32.77 Aligned_cols=93 Identities=19% Similarity=0.096 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
.+.++.++++.+++-+.-..+.....-..-...+.+.|++.+|.++|+++.+.. |....-..|+..|.....-.+=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 456677788888877776544433332333345667888888888888876543 333334444444443322222233
Q ss_pred HHHHHHHCCCCCCHH
Q 003353 571 LLETYVESAAKVDLV 585 (827)
Q Consensus 571 ~~~~m~~~g~~pd~~ 585 (827)
.-+++.+.+..|+..
T Consensus 99 ~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 99 YADEVLESGADPDAR 113 (160)
T ss_pred HHHHHHhcCCChHHH
Confidence 334455555444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.29 E-value=41 Score=34.14 Aligned_cols=207 Identities=10% Similarity=0.067 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCC-
Q 003353 335 NFRPSFNIFASLVDSM-GKAGRLDTSMKVYMEMQGCGHRPS---APMYVSLIESYAKAGKLDTALRLWDEMRI---AGF- 406 (827)
Q Consensus 335 g~~p~~~t~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~- 406 (827)
+-.||+..-|..-..- .+..++++|+.-|.+..+.....- -.+.-.+|..+.+.|++++..+.+.+|.. +.+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665444322111 134578999999999886432222 33556788899999999999999988853 111
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---
Q 003353 407 -RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-----GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--- 477 (827)
Q Consensus 407 -~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--- 477 (827)
.-+..+.|++++......+.+.-...++.-.+. +-..--.|-+.|...|...+.+.+..+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224566788888777777777766666644321 11111224456777888888888888888888652110
Q ss_pred --------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CchHhHHHHHH-----HHHHcCCHHHHHHHHHHHh
Q 003353 478 --------PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLM-----VYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 478 --------pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~-----~y~~~g~~~~A~~~~~~m~ 541 (827)
--...|..-|+.|....+-..-..++++.+.... -|.......|. +..+.|.+++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 0134677778888888888888888887765322 23333333333 4557788888876554444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.09 E-value=42 Score=34.09 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 316 AKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.+.|++++|.+.|+.+..+-. +-...+--.++-++.+.+++++|....++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 445566666666665554320 111233334445555666666666666655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=48 Score=34.69 Aligned_cols=119 Identities=9% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG-KLDTALRLWDEMRIAGFRPNFGLFTMIIES 419 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 419 (827)
.+-...+.++++.++ ++|...+-.+.+ .+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 333444444444444 334444444443 223333333333343332 12334444444442 2344444445555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+.++.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555554 23443333333321 1 122344555555553 45555555554
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=85.88 E-value=1.9 Score=35.41 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=42.8
Q ss_pred hhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceeeeecch---------hHHHHHHHHHhccCCCcee
Q 003353 700 WSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP---------TLKIVIAQMLSSVESPFEV 762 (827)
Q Consensus 700 w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~~~tg~---------~~~~~~~~~l~~~~~pf~~ 762 (827)
|.+|+|.|+.+.|+..+..++..... .+. +..+.++||. .++..|..++...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~----~~~-~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL----KGL-EQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH----cCC-CceEEEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 78999999999998887766655543 232 2678999994 3677777778777777765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.1 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A 254 (827)
|.+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44555555555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.01 E-value=34 Score=32.12 Aligned_cols=53 Identities=8% Similarity=-0.135 Sum_probs=29.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
.+.++.+++..+++.+.-.. |.....-..-...+.+.|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665544 444444444444556666666666666666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.69 E-value=1.9 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 659 VNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 659 ~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
++.|+++|.+.|++++|.+++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56899999999999999999999653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.36 E-value=94 Score=36.67 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-ch------Hh--HHHHHHHHHHcCCHHHHHHHHH--------HHhhCCCCCCHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGYS-VD------VS--ASDVLMVYIKDGSVDHALRWLR--------FMGSSGIRTNNFIVRQ 554 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~-~~------~~--~~~li~~y~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ 554 (827)
-.+++..|.+..+++....-. |+ .. .+.....+-..|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 467888888888888754211 11 11 2222223445688999999997 4555555555555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.83 E-value=40 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=11.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+.++.|+...|..+|+.+.+.|++
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCH
Confidence 344444444555555555544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.82 E-value=10 Score=39.15 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD---CKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 306 (827)
+....+-..++..-....++++++..+-+++... ..| ..++|-.++.- -++++++.++..-++.|+-||.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchh
Confidence 4444555555555556667777777776665421 111 22333333322 35778888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.43 E-value=17 Score=35.16 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL--STYTALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~A~~l~~~m 506 (827)
.+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555555555443322221 23333444444444444444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.22 E-value=27 Score=33.66 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN--NFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+..+.+-|++.|+.++|.+.|.++.+....+. ..++-.++..+.-.|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566777777888888888888887776554444 23455566667777777777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.08 E-value=13 Score=35.87 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcC
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g 528 (827)
+.++|++++|..-|.+.++. .|. .+.|..-..++.+.+.++.|+.--...++.++........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45566666666666666652 222 1223333334455555555555555555544433333333334455555
Q ss_pred CHHHHHHHHHHHhh
Q 003353 529 SVDHALRWLRFMGS 542 (827)
Q Consensus 529 ~~~~A~~~~~~m~~ 542 (827)
.+++|+.-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.81 E-value=1.2e+02 Score=35.86 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 388 (827)
|+-+.+.+.+++|.++.+..... .+ -...+...|+.+...|++++|-...-.|. ..+..-|..-+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 44566667777777665544332 22 23456667777777777777777777776 33555666555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 389 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544332222 111112334455555555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.78 E-value=17 Score=40.93 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+.-.|+++.|..++..+. ....+.++..+-+.|-.++|+++- +|..- -.....+.|++
T Consensus 596 ~vmrrd~~~a~~vLp~I~----------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl 653 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP----------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRL 653 (794)
T ss_pred HhhhccccccccccccCc----------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcH
Confidence 345677777776655443 223455666677777777776542 22221 12234466777
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
+.|.++..+.. +..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 77777765543 456678888888888888888887777654 335666666677766666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 367 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
.+.| ..|. +| -+|...|+++++++++..-
T Consensus 719 ~~~g-~~N~-AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQG-KNNL-AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred Hhhc-ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence 6665 2222 22 3456678888877776544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.37 E-value=24 Score=34.44 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh---CCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD---SDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
++|++.|-.+...+. ..++.....|...|. ..+.++|..++.+..+ .+-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~---l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE---LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCC---CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455666655555553 455555555555555 4456666666665543 22245666677777777777766665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.24 E-value=83 Score=33.82 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=98.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN-GISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~~~~li~~~~ 246 (827)
..+.-++++++..-+........ .++...|.++... +.++++++....+.+...-... .......|......+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45566778887744443322221 2344444444433 7888888888888776642100 0112223333333444
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----cCChh---HHHHHHHHhHh--CCccCCHHHHHHHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN-----KGLPY---KAFEIYESMEK--GECSLDGSTYELMIPSLA 316 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~-----~g~~~---~A~~~~~~m~~--~g~~pd~~t~~~li~~~~ 316 (827)
+...+.|..++.+-..... .+......++..+.. ..+++ ..+.+=..+.. ........+|..+.+.+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4443333333333221110 001112222222111 11111 11111111111 112234567888888999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 317 KSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+.|.++.|...+..+.+.+... +..+.-.-+...-..|+..+|...+++...
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998888754211 234444556677778888999998888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.2e+02 Score=35.70 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=68.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
++-+.+.+.+++|+.+.+.....-. ...-...+...|..+.-.|++++|-...-.|.. -+..-|.--+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~--~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE--RFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc--ccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4556678888888888766543210 011345777888888888999999888888876 4677777777777776
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
++..... .-+.......+...|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 6654332 223322223455667777777665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.34 E-value=1e+02 Score=34.36 Aligned_cols=88 Identities=9% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCF 258 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~ 258 (827)
...+|+.+..+ +..|+..|..-+.-+-+.+.+.+...+|.+|+... |.++..|-.-..-...-+ .++.|..+|
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H----p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH----PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 45667766665 56788899988888777887999999999998887 666776654444433333 388888888
Q ss_pred HHhHhCCCCCCHHHHH
Q 003353 259 KKVLDSDCKIDTQSYN 274 (827)
Q Consensus 259 ~~m~~~g~~p~~~~~n 274 (827)
.+-.+..+. +...|-
T Consensus 164 lrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 164 LRGLRFNPD-SPKLWK 178 (568)
T ss_pred HHHhhcCCC-ChHHHH
Confidence 877765543 444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=80.12 E-value=3.9 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNS 470 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~ 470 (827)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 1e-13
Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 18/230 (7%)
Query: 324 AIKLFQEMKERNFRP-----SFNIFASLVDSMGKAGRLDTSMKVYME---------MQGC 369
A L ++ + + R + + RL ++ + +
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
P L++ LD + A + + +L +A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 430 MSIFT---DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
+ + L T Y+ ++ A G + + + AGL P L +Y A
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206
Query: 487 LTLLAKR-KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
L + ++ + + L +M G + + VL+ +V A+
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 2e-10
Identities = 40/319 (12%), Positives = 89/319 (27%), Gaps = 31/319 (9%)
Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI---YESM 296
R++Q L++ + + Q L A + +
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
+ L Y ++ A+ G + + +K+ P +A+ + MG+ +
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 357 DTSMKVYM-EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN------ 409
+++ + +M G + A L+ +A L ++ + P
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK 276
Query: 410 -------FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE--------- 453
+ H L ME A + S L
Sbjct: 277 LLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARK 336
Query: 454 -----MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
+ A++ + + G + L LL +R++V + ++L +
Sbjct: 337 TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPA 396
Query: 509 MGYSVDVSASDVLMVYIKD 527
G S A ++
Sbjct: 397 QGESFTTLARELSARTFSR 415
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 2e-04
Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 6/223 (2%)
Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
F + L K + YN V+ A+ + V
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRL 321
D+ D SY + + E E M + L +++ ++ L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
A K+ P + L+ + + K+++ ++ +++ L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 382 -----IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
+ S K ++ + +
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRE 355
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 8e-10
Identities = 115/670 (17%), Positives = 200/670 (29%), Gaps = 185/670 (27%)
Query: 33 HHLDFNHKFIKNTSFSSRLDYGETQNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNEWTEE 92
HH+DF + GE Q KD + + +V ++ D K EE
Sbjct: 5 HHMDF--------------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE 50
Query: 93 IEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNR--WKWGPE 150
I+++ S + G + F + + K V K VE V R +K+
Sbjct: 51 IDHIIMSKDAV---SGTLRL---FW--TL---LSKQ---EEMVQKFVEEVLRINYKF--- 93
Query: 151 LETQLDKLQFVPKMV---HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
L + + Q P M+ +I Q ++ ND+ +AK V + Y+ L L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYN---VSRLQPYLKLRQAL 144
Query: 208 NESRD-----FDGML----------SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
E R DG+L V I F + + + LE
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--F--WLNLKNCNSPETVLE 200
Query: 253 MSYCCFKKVLDSDCKIDTQSYNV----------LMTLFLNKGLP--------------YK 288
M ++ + S N+ L L +K +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 289 AFEIYESMEKGEC-----SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
AF + C + + + + LD + ++
Sbjct: 261 AFNL-------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE------VKSLL 307
Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
+D + L + P +S+I A + L WD +
Sbjct: 308 LKYLDC--RPQDLPREV--------LTT---NPRRLSII-----AESIRDGLATWDNWK- 348
Query: 404 AGFRPNFGLFTMIIESHAKSGKLD--------IAMSIFTDMERAGFLPTPSTYSCLLEMH 455
N T IIES L+ +S+F +PT LL +
Sbjct: 349 ---HVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAH---IPTI-----LLSLI 395
Query: 456 ASSGQVDSAMKLYNSMTSAGL---RPGLSTYTA-LLTLLAKRKLVDVAA--KILLEMKTM 509
M + N + L +P ST + + L K KL + A + +++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--- 452
Query: 510 GYSV-DVSASDVLMVYIKDG-----------SVDHALRWLRFMGSSGIRTN-NFIVRQLF 556
Y++ SD L+ D +++H R F + + F+ +++
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIR 508
Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
S L+ L Y ++ D + ER + AIL
Sbjct: 509 HDSTAWNASGSILNTLQ---------QLKFYKP---YICD-NDPKYERLVNAILDFLPKI 555
Query: 617 AHAFLCGLFT 626
+C +T
Sbjct: 556 EENLICSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 68/439 (15%), Positives = 134/439 (30%), Gaps = 113/439 (25%)
Query: 30 NFIHHLDFNHKFIKNTSFSSRLDYGETQNFVKDAIFFRKPNYVRSY------CSGKSGD- 82
++ +D N + S + +L Q ++ + Y + K+ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 83 -GEKCNEW--TEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVG------GIKK------ 127
C T + D + T + + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 128 -----PFLNASAVAKIVEVVNRWK-WGPELETQLDKLQFVPKMVHITQALKVINDSDT-- 179
P + I + + W W DKL + I +L V+ ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNW---KHVNCDKLTTI-----IESSLNVLEPAEYRK 373
Query: 180 ---SLSLFR-------------WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
LS+F W + V + V+N+ + SL ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIW-----FDVIKSDV----MVVVNKLHKY----SLVEK- 419
Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
++ IS+ S YL KLE Y + ++D YN+ T +
Sbjct: 420 --QPKESTISIPS------IYLELKVKLENEYALHRSIVD--------HYNIPKTFDSDD 463
Query: 284 GLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL---FQEMKERNFRPS 339
+P + Y + G + L + L + L F E K R+ +
Sbjct: 464 LIPPYLDQYFYSHI--G--------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL---R 396
+N S+++++ +K Y + C + P V+ I + K++ L +
Sbjct: 514 WNASGSILNTL-------QQLKFY-KPYICDNDPKYERLVNAILDFLP--KIEENLICSK 563
Query: 397 LWDEMRIAGFRPNFGLFTM 415
D +RIA + +F
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 82/531 (15%), Positives = 153/531 (28%), Gaps = 167/531 (31%)
Query: 27 FHSNFIHHLDFNH--KFIKNTSFSSR----------------------LDYGET--QNFV 60
F F+ + D K+ S L E Q FV
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 61 KDAIFFRKPNY------VRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTG-------- 106
++ + + NY +++ S + E+ + L V
Sbjct: 84 EEVL---RINYKFLMSPIKTEQRQPSMMTR---MYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 107 ----KGIRSVEPGFDDHVMV---GGIKKPFLNASAVAKIVEVVNR------W-KWG--PE 150
+ + + P +V++ G K ++ A V +V + W
Sbjct: 138 LKLRQALLELRPA--KNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 151 LETQLDKLQFVPKMVH-ITQALKVINDSDTSL-----SLFRWAKRQSWYVPGDECYVMLF 204
ET L+ LQ K+++ I +D +++ S+ +R P + C ++L
Sbjct: 195 PETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 205 DVLNES--RDFDG----MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
+V N F+ +L+ + V D + + + L + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----L 307
Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
K L DC+ VL P + I ES+ G + D +
Sbjct: 308 LKYL--DCRPQDLPREVL------TTNPRRLSIIAESIRDGLATWDNWKH-------VNC 352
Query: 319 GRLDAAIKLF------QEMKERNFRPSFNIF----------------------------- 343
+L I+ E ++ F ++F
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKM-FD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 344 ---ASLVDSMGKAGR-----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
SLV+ K + +KV +E + HR S+++ Y D+
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-------SIVDHYNIPKTFDS-- 461
Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFL 442
D + F I H K ++ + +F D FL
Sbjct: 462 --DDLIPP----YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFL 503
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 24/184 (13%), Positives = 63/184 (34%), Gaps = 9/184 (4%)
Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-T 278
+ ++ + + A +YLA + + + + + ++ ++ +
Sbjct: 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109
Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR- 337
++ P A + EC + + L K RLD A K ++M++++
Sbjct: 110 IYFYDQNPDAALRTLHQGDSLECMA------MTVQILLKLDRLDLARKELKKMQDQDEDA 163
Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
+ + V +L + ++ EM P+ + + G+ + A +
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 398 WDEM 401
E
Sbjct: 223 LQEA 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.86 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.69 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.45 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.4 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.35 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.33 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.3 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.22 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.17 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.16 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.0 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.97 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.87 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.8 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.77 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.72 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.67 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.65 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.52 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.44 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.23 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.69 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.01 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.14 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.36 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.55 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.46 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 82.95 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=346.13 Aligned_cols=462 Identities=8% Similarity=-0.013 Sum_probs=330.5
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 172 ~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
...+++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.++|++
T Consensus 95 ~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-----NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----GTCHHHHHHHHHHHHHTTCH
T ss_pred HHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHhhH
Confidence 344455555555554443 2344444445555555555555555555544322 33444555555555555555
Q ss_pred HHHHHHHHHhHhC---------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDS---------------DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 252 ~~A~~~~~~m~~~---------------g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
++|.++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhc
Confidence 5555555422111 11123445555555555555555555555555443211 2223333332222
Q ss_pred HcCCHHH--HHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 317 KSGRLDA--AIKL-FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 317 ~~g~~~~--A~~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
..+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 1111111 1111 223333332333344555677888999999999999999865 5799999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
|+++|+++.+.+.. +..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999987644 77889999999999999999999999998654 34789999999999999999999999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003353 474 AGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552 (827)
Q Consensus 474 ~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 552 (827)
. .| +..+|+.++.+|.+.|++++|.++|+++.+.++....++..++.+|.+.|++++|.++|+++.+... .+..+|
T Consensus 402 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 478 (597)
T 2xpi_A 402 M--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLL 478 (597)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 3 34 5779999999999999999999999999998776667899999999999999999999999987542 367889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhcc
Q 003353 553 RQLFESCMKNALYESAKPLLETYVES----AAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFT 626 (827)
Q Consensus 553 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~ 626 (827)
..++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|...++.+....+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----------- 547 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST----------- 547 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------
Confidence 99999999999999999999999886 66787 78999999999999999999998877653211
Q ss_pred CCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
. ...+|..|+.+|.+.|++++|.+.|+++++..+
T Consensus 548 --------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 548 --------------------------N-DANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp --------------------------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------------------------C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 0 124567999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=344.99 Aligned_cols=465 Identities=12% Similarity=0.046 Sum_probs=387.8
Q ss_pred HHcCCCCccHHHHhhhCCCCCCHHH---HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003353 142 VNRWKWGPELETQLDKLQFVPKMVH---ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218 (827)
Q Consensus 142 l~~~~~~~~~~~~l~~~~~~p~~~~---~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~ 218 (827)
.+...+..++...-...+..|+... ++.++...|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.+
T Consensus 95 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 3333333343333333344565543 467777899999999999987653 5789999999999999999999999
Q ss_pred HHHHHHHcCC------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 219 LFDEMVHDSS------------KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 219 l~~~m~~~~~------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+|+++..... ...+.+..+|+.++.+|.+.|++++|.++|+++.+.++. +...|..+...+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchh
Confidence 9996432210 001335889999999999999999999999999987654 677777777665444333
Q ss_pred hHHH--HH-HHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 287 YKAF--EI-YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 287 ~~A~--~~-~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2222 22 556666666667778888899999999999999999999876 588999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (827)
+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. ..+..+++.++.+|.+.|++++|.++|+++.+... .
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-Q 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence 9999866 4477889999999999999999999999998764 34789999999999999999999999999987543 3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHH
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 523 (827)
+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|.+.|++++|.++|+++.+..+....++..++.+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 78899999999999999999999999999853 33778999999999999999999999999999877666789999999
Q ss_pred HHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 524 YIKDGSVDHALRWLRFMGSS----GIRTN--NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 524 y~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|++.|+++.+.++. +..+|..+..+|.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 99999999999999999876 66787 789999999999999999999999999987644 889999999999999
Q ss_pred CCHHHHHHHHHHHhhccCch
Q 003353 598 QDEQNERHLMAILSATKHKA 617 (827)
Q Consensus 598 g~~~~a~~l~~~l~~~~~~~ 617 (827)
|++++|...++++....|..
T Consensus 564 g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 99999999999877665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=280.74 Aligned_cols=204 Identities=13% Similarity=0.192 Sum_probs=147.3
Q ss_pred HHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 003353 289 AFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR---------LDT 358 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 358 (827)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44445555555544333 24566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003353 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492 (827)
Q Consensus 439 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 492 (827)
.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888887765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=281.01 Aligned_cols=204 Identities=13% Similarity=0.174 Sum_probs=142.3
Q ss_pred HHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC---------HHH
Q 003353 254 SYCCFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR---------LDA 323 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~---------~~~ 323 (827)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455544444332 34566666666777777777777777666667777777777766665543 567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777778888888888888888888888887777777888888888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 788888888888888888888888888888888877777888888777777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=248.28 Aligned_cols=381 Identities=12% Similarity=0.086 Sum_probs=297.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+.+.|++++|.+.++++.+.. |.+...+..+...+.+.|++++|...++...+..+ .+..+|+.+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHC
Confidence 455667888888888888887776 77777777888888888888888888887776554 3777888888888888
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+...+...|++++|.+.|
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888888887642 2245578888888888888888888888888765 445566777888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (827)
+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+.. +...+..+...+...|++++|...+++..+....
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 8887754 345778888888888888888888888888876543 5677888888888888888888888888775432
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
+..++..+...|.+.|++++|.+.|+++.+. .| +..+|..+...+.+.|++++|.+.++++++..+.....+..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 5778888888888889999999888888874 44 45678888888888899999999998888876655567888888
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 598 (827)
.|.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|+..|+++++..+. +...|..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 8889999999999998888643 234667888888888999999999999998876544 5666776666665544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=245.94 Aligned_cols=381 Identities=13% Similarity=0.062 Sum_probs=332.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
...+...|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++..++.. +.+..+|..+...|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHH
Confidence 455667899999999999988875 5667788888999999999999999999999887 8899999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|...|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.
T Consensus 80 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999886543 677899999999999999999999999987532 2455777888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..+....
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999875 5668899999999999999999999999999865 446788999999999999999999999999886533
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
+..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+...|.+.|++++|.+.|+++.+. .+.+..++..+.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 6888999999999999999999999999986533 6788999999999999999999999999985 234678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcC
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNA 563 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 563 (827)
..+.+.|++++|.+.++++++..+.....+..+...|.+.|++++|.+.|+++.+. .|+ ...+..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999876655568899999999999999999999999974 444 556666655555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-22 Score=225.56 Aligned_cols=441 Identities=10% Similarity=-0.041 Sum_probs=302.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+..+...|++++|+..|+.+.+.. |+..+|..++.++.+.|++++|...++++++.. |.+..++..++.+|.
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHHHHHH
Confidence 3556667788888888888887764 577888888888888888888888888888776 777788888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
+.|++++|...|+++.+.++. +......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888888776542 4344444444444433333444444333332222222222211111111111111111
Q ss_pred HHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 003353 327 LFQEMKERNF---------RPSFNIFASLVDSMGK---AGRLDTSMKVYMEMQG-----CGH--------RPSAPMYVSL 381 (827)
Q Consensus 327 ~~~~m~~~g~---------~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~l 381 (827)
+...+..... +.+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111111 1124445555555554 7889999999988887 311 1234577788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
...+...|++++|...++++.+.... ..++..+...|...|++++|...++++.+... .+..+|..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 88888999999999999998886543 77888888889999999999999998887543 2667888888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++|...|+++.+.. ..+..++..+...+...|++++|...++++.+..+.....+..+...|.+.|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988742 22456788888888899999999999999888766555678888889999999999999998887
Q ss_pred hCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 542 SSGIR-TN----NFIVRQLFESCMK---NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 542 ~~~~~-p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
+.... ++ ...+..+...|.. .|++++|...++++++..+. +..++..+...|.+.|++++|...++.....
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 53211 11 3367777788888 89999999999998887544 6778888899999999999999988887766
Q ss_pred cCchhHH
Q 003353 614 KHKAHAF 620 (827)
Q Consensus 614 ~~~~~~~ 620 (827)
.+.....
T Consensus 479 ~~~~~~~ 485 (514)
T 2gw1_A 479 ARTMEEK 485 (514)
T ss_dssp CSSHHHH
T ss_pred ccccHHH
Confidence 6644443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=218.73 Aligned_cols=315 Identities=13% Similarity=0.074 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..++..+.+.|++++|..+|+++++.. +.+..++..++.+|.+.|++++|...|+++.+.++. +..+|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 4567788899999999999999999999998876 778999999999999999999999999999887654 78889
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDG----STYELMI------------PSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
..+..+|.+.|++++|.+.|+++.+.. |+. .++..++ ..+.+.|++++|.+.++++.+.. +
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999999998753 433 4555553 34788889999999998888765 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI- 416 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l- 416 (827)
.+..++..++.+|.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.... +...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 677888888888999999999999998887654 456788888888888899999999999888865432 34444433
Q ss_pred -----------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CH
Q 003353 417 -----------IESHAKSGKLDIAMSIFTDMERAGFLPT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GL 480 (827)
Q Consensus 417 -----------i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 480 (827)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|+..++++.+. .| +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccH
Confidence 66677777777777777777764321 2 346667777777777777777777777663 33 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 521 (827)
.+|..+..+|...|++++|.+.++++++..+.....+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 67777777777777777777777777775544434444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-21 Score=217.41 Aligned_cols=328 Identities=16% Similarity=0.090 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003353 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294 (827)
Q Consensus 215 ~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~ 294 (827)
.+...+.++.... +.+..++..++..|.+.|++++|..+|+++.+..+. +..+|..+..+|...|++++|++.|+
T Consensus 10 ~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQS----MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccccc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444455555554 778889999999999999999999999999876543 78999999999999999999999999
Q ss_pred HhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHH------------HHHHhcCCHHHH
Q 003353 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF---NIFASLV------------DSMGKAGRLDTS 359 (827)
Q Consensus 295 ~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li------------~~~~~~g~~~~A 359 (827)
++.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.+ +.+. .++..++ ..+.+.|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998864 2367889999999999999999999999999865 3344 5665554 448889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
...|+++.+.. +.+..++..+..+|.+.|++++|++.|+++.+... .+..++..+...|...|++++|...|+++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988764 45778889999999999999999999999887643 36788899999999999999999999998865
Q ss_pred CCCCCHHHHHHH------------HHHHHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 440 GFLPTPSTYSCL------------LEMHASSGQVDSAMKLYNSMTSAGLRPG-----LSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 440 g~~p~~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~li~~~~~~g~~~~A~~l 502 (827)
... +...+..+ ...|.+.|++++|...|+++.+ +.|+ ...+..+...+.+.|++++|.+.
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 332 44455444 7888889999999999999887 4455 34677788888899999999999
Q ss_pred HHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHH
Q 003353 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLF 556 (827)
Q Consensus 503 ~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 556 (827)
++++++..+.....+..+..+|.+.|++++|...|+++.+. .|+ ...+..+.
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99988876555567888888999999999999999998864 444 34444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-21 Score=219.27 Aligned_cols=442 Identities=9% Similarity=-0.059 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+......+.+.|++++|+..|+++++.. |+..+|..+..+|.+.|++++|...|+++.+.++. +..+|..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHH
Confidence 4567778888999999999999999999875 37889999999999999999999999999887654 77889999
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
..+|.+.|++++|+..|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-..........
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999887652 344455555555555444444444444333332222222111111111111111
Q ss_pred HHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCC--------CCHH
Q 003353 357 DTSMKVYMEMQGCGH---------RPSAPMYVSLIESYAK---AGKLDTALRLWDEMRI-----AGFR--------PNFG 411 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------pd~~ 411 (827)
.....+...+..... +.+...+......+.. .|++++|+.+|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1124455555555554 8999999999999988 3111 2356
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 412 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
++..+...+...|++++|...++++.+.... ..++..+...|...|++++|...++++.+.. ..+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 7788889999999999999999999987543 8889999999999999999999999999842 235678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 571 (827)
..|++++|...++++.+..+.....+..+...|.+.|++++|...++++.+... .+...+..+...|.+.|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999998777667888999999999999999999999987542 2456777888899999999999999
Q ss_pred HHHHHHCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHh
Q 003353 572 LETYVESAAKV-D----LVLYTSVLAHLVR---CQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643 (827)
Q Consensus 572 ~~~m~~~g~~p-d----~~t~~~ll~a~~~---~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 643 (827)
++++.+..+.. + ...+..+...|.+ .|++++|...++.+....+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------- 446 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP---------------------------- 446 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT----------------------------
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc----------------------------
Confidence 99998754432 2 4488899999999 9999999988876543211
Q ss_pred hccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 644 ~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+ ....+..++.+|.+.|+.++|...++++.+..+
T Consensus 447 -----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 447 -----R-----SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp -----T-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred -----c-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 0 112345899999999999999999999998765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-19 Score=208.21 Aligned_cols=428 Identities=11% Similarity=0.035 Sum_probs=304.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...|++++|++.|+.+.+.. +.++.+|..+..++.+.|++++|++.|+++++.. +.+..++..+..+|.+
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHH
Confidence 555666777888888888777765 5567777777788888888888888888877776 6777777778888888
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------CccCCHHHHHHHHHHHHHcCCH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------ECSLDGSTYELMIPSLAKSGRL 321 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~li~~~~~~g~~ 321 (827)
.|++++|...|+.+ ... |+ ..+..+..+...+...+|...++++... ...|+... +..+....+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 176 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFGIFDS 176 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHHTSCH
T ss_pred cCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHHhcCh
Confidence 88888888877533 221 22 2222344555555667777777777543 12233322 3334445555
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHH
Q 003353 322 DAAIKLFQEMKERNFRPSFN-IFASLVDSMGK--------AGRLDTSMKVYMEMQGCGHRPS-------APMYVSLIESY 385 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~ 385 (827)
+.+...+...... .+... ....+...+.. .|++++|..+++++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 5544433332221 11111 22233322222 257899999999998764 223 33577777888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
...|++++|.+.++++.+.. |+..++..+...|...|++++|.+.++++.+.... +..+|..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 89999999999999998864 55788888999999999999999999999876533 6888999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 466 KLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 466 ~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
..|+++.+. .| +...+..+...+...|++++|.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+..
T Consensus 331 ~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999884 34 456888899999999999999999999999876666688889999999999999999999987532
Q ss_pred -----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 545 -----IRTNNFIVRQLFESCMKN----------ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 545 -----~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
.......+..+...+... |++++|+..|+++++..+. +...+..+...|.+.|++++|...++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111222344445567777 9999999999999987654 678899999999999999999999988
Q ss_pred HhhccCchhH
Q 003353 610 LSATKHKAHA 619 (827)
Q Consensus 610 l~~~~~~~~~ 619 (827)
.....+....
T Consensus 488 al~~~~~~~~ 497 (537)
T 3fp2_A 488 SAILARTMDE 497 (537)
T ss_dssp HHHHC--CHH
T ss_pred HHHhCCCcHH
Confidence 7765554333
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-20 Score=209.44 Aligned_cols=426 Identities=9% Similarity=-0.024 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 003353 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208 (827)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~ 208 (827)
.....+...+....+..++...-..+...|+... .+.++...|++++|++.|+.+.... +.+..++..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 3456667777777888887777666666665433 4666778899999999999999875 567889999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD------CKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~ 282 (827)
+.|++++|...|+ ..... +. .....+..+...+...+|...++.+.... ..|+. ..+..+..
T Consensus 105 ~~g~~~~A~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLN----GD---FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HcCCHHHHHHHHH-HHhcC----CC---CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 9999999999996 44332 21 12223456666777789999999986542 12333 33445556
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHH-HHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTY-ELMIPSLA--------KSGRLDAAIKLFQEMKERNFRPSF-------NIFASL 346 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~-~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~l 346 (827)
..+.+.+...+...... .+....+ ..+...+. ..|++++|..+++++.+.. +.+. .++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHH
Confidence 67777776665554432 2332222 22222221 2357899999999998765 3332 356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003353 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 426 (827)
...+...|++++|...++++.+. .|+..+|..+...+...|++++|.+.++++.+.... +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 78888999999999999999986 456888999999999999999999999999887543 678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 506 (827)
++|.+.++++.+.... +...|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|.+.++++
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999986533 56789999999999999999999999998842 234568888999999999999999999999
Q ss_pred HHCCCCchH------hHHHHHHHHHHc----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 507 KTMGYSVDV------SASDVLMVYIKD----------GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 507 ~~~g~~~~~------~~~~li~~y~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
++..+.... .+..+...|.+. |++++|...|+++.+... .+...+..+...|.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 875432221 244556778888 999999999999987542 356788889999999999999999
Q ss_pred HHHHHHHCCCC
Q 003353 571 LLETYVESAAK 581 (827)
Q Consensus 571 ~~~~m~~~g~~ 581 (827)
.|++.++..+.
T Consensus 484 ~~~~al~~~~~ 494 (537)
T 3fp2_A 484 LFEDSAILART 494 (537)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhCCC
Confidence 99999987655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-18 Score=182.03 Aligned_cols=314 Identities=15% Similarity=0.077 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
++..+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...|+++.+..+. +...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHH
Confidence 34567777788888888888888888888776 677788888888888888888888888888776543 6677888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCcc--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECS--LDGSTYELM------------IPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 341 (827)
+...+...|++++|.+.|++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 888888888888888888888765320 133333333 456666777777777777776654 45566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~--- 230 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ--- 230 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH---
Confidence 66677777777777777777777776654 345666666777777777777777777766654322 2222211100
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-----STYTALLTLLAKRKLV 496 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~li~~~~~~g~~ 496 (827)
+. .......+...+.+.|++++|...++++.+. .|+. ..+..+...+.+.|++
T Consensus 231 --------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 231 --------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp --------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 00 0001112234455555555555555555542 2221 1223344455555555
Q ss_pred HHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 497 ~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
++|.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555554433334555555555555666666665555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-17 Score=178.68 Aligned_cols=331 Identities=15% Similarity=0.051 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
+..+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|++.|+++.+.. +-+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 455666777777777777777777777665443 56677777777777777777777777776542 1245666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFR---PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 391 (827)
+...|++++|.+.++++.+.. + .+...+..+...+. ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777766543 2 22333333311100 01122234566667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
++|++.++++.+... .+...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777666543 2556666667777777777777777777665432 35666777777777777777777777777
Q ss_pred HHCCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH----hHHHHHHHHHHcCCHHHHH
Q 003353 472 TSAGLRPG-LSTY------------TALLTLLAKRKLVDVAAKILLEMKTMGYSVDV----SASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 472 ~~~g~~pd-~~t~------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~li~~y~~~g~~~~A~ 534 (827)
.+. .|+ ...+ ..+...+.+.|++++|...++++.+..+.... .+..+...|.+.|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 663 333 2222 23366788999999999999999987665442 3456788999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
..++++.+.. +.+..++..+...|.+.|++++|.+.|+++++..+. +...+..+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 9999999753 235778888999999999999999999999987655 566777777666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-15 Score=170.06 Aligned_cols=366 Identities=11% Similarity=0.052 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNE----SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKL 251 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 251 (827)
++..+..+.. ..++.++..+...|.. .+++++|...|++..+.+ +..++..|...|.. .+++
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCH
Confidence 3555555555 2467888888888887 889999999999988765 47788889999988 8899
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDA 323 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~ 323 (827)
++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999988854 67788888888888 788999999999988765 56778888888887 788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTAL 395 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 395 (827)
|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988875 56788888888887 889999999999988764 66778888888876 78899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHH
Q 003353 396 RLWDEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS-----GQVDSAMK 466 (827)
Q Consensus 396 ~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~ 466 (827)
+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... ++.++|+.
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999888764 55667777777777 788999999999888764 566777788888887 88999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHH
Q 003353 467 LYNSMTSAGLRPGLSTYTALLTLLAKRK---LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRF 539 (827)
Q Consensus 467 l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~ 539 (827)
.|++..+.| +...+..+...|...| +.++|.+.+++..+.+ ....+..+...|.. .+++++|..+|++
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 999888854 4566777777777656 7888999999888864 34567788888888 7899999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC
Q 003353 540 MGSSGIRTNNFIVRQLFESCMK----NALYESAKPLLETYVESAAK 581 (827)
Q Consensus 540 m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~ 581 (827)
..+.+ +...+..|...|.+ .++.++|...|++..+.++.
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88866 45666677777777 78899999999998887754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-16 Score=176.57 Aligned_cols=418 Identities=10% Similarity=0.042 Sum_probs=307.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 184 f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
|+.+.+.+ +-+...|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++..+
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~----P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF----PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34444443 567889999988 478899999999999999886 88999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCChhHHHH----HHHHhHhC-CccC-CHHHHHHHHHHHHH---------cCCHHHHHHH
Q 003353 264 SDCKIDTQSYNVLMTL-FLNKGLPYKAFE----IYESMEKG-ECSL-DGSTYELMIPSLAK---------SGRLDAAIKL 327 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~-~~~~g~~~~A~~----~~~~m~~~-g~~p-d~~t~~~li~~~~~---------~g~~~~A~~~ 327 (827)
.. |++..|...+.. ....|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+
T Consensus 75 ~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 64 688888887753 345677777665 77766542 5443 45677777776654 6889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hCC---CCCC--------HHH
Q 003353 328 FQEMKERNFRPSFNIFASLVDSM-------------GKAGRLDTSMKVYMEMQ------GCG---HRPS--------APM 377 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~ 377 (827)
|++..+.........|....... .+.++++.|..++.++. +.. +.|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99998732111123444332211 13456777877777632 211 2343 246
Q ss_pred HHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHH
Q 003353 378 YVSLIESYAKA----GKL----DTALRLWDEMRIAGFRPNFGLFTMIIESHAK-------SGKLD-------IAMSIFTD 435 (827)
Q Consensus 378 ~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-------~g~~~-------~A~~~~~~ 435 (827)
|...+...... ++. ++|..+|++...... -+...|...+..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 66655443332 232 477888998887633 367888888887775 69987 89999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-L-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 436 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
..+.-.+.+...|..++..+.+.|++++|..+|+++++ +.|+ . ..|...+..+.+.|++++|.++|+++++.....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 88632233688999999999999999999999999998 4565 2 478888888889999999999999999864432
Q ss_pred hHhHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--CHHHHHH
Q 003353 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-V--DLVLYTS 589 (827)
Q Consensus 514 ~~~~~~li~-~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p--d~~t~~~ 589 (827)
...+...+. .+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++.++.++. | ....|..
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 223332222 2446899999999999998753 224678888888888999999999999999987543 2 3568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 590 VLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 590 ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
.+......|+.+.+..+.+++....
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888889999999999888765543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-14 Score=165.38 Aligned_cols=365 Identities=12% Similarity=0.035 Sum_probs=312.1
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCChh
Q 003353 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN----KGLPY 287 (827)
Q Consensus 216 A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~----~g~~~ 287 (827)
+...+....+. .+..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .++++
T Consensus 26 ~~~~~~~~a~~------g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 26 NLEQLKQKAES------GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 34555555443 468888889999998 899999999999998863 77889999999999 89999
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK----AGRLDTS 359 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 359 (827)
+|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 67788888888988 889999999999999876 46788888888887 7899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMS 431 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~ 431 (827)
.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999865 78889999999988 899999999999998875 66788888888886 889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHH
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-----KLVDVAAKI 502 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-----g~~~~A~~l 502 (827)
.|++..+.| +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999998864 66778888888888 899999999999998754 566777788888887 899999999
Q ss_pred HHHHHHCCCCchHhHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 003353 503 LLEMKTMGYSVDVSASDVLMVYIKDG---SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK----NALYESAKPLLETY 575 (827)
Q Consensus 503 ~~~m~~~g~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m 575 (827)
+++..+.+ +...+..+...|.+.| +.++|+++|++..+.| +...+..+...|.. .+++++|+..|++.
T Consensus 319 ~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 319 YTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999875 3457788888888866 8899999999999875 56677778788888 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccC
Q 003353 576 VESAAKVDLVLYTSVLAHLVR----CQDEQNERHLMAILSATKH 615 (827)
Q Consensus 576 ~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~l~~~~~ 615 (827)
.+.| +...+..|...|.+ .++.++|...++.....++
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9876 56788888889988 8999999999998777663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-15 Score=173.20 Aligned_cols=422 Identities=9% Similarity=0.072 Sum_probs=307.8
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
|++.++.. |.+..+|..++. +.+.|++++|..+|+++.+..+. +...|..++..+.+.|++++|.++|++.+..
T Consensus 2 le~al~~~----P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN----PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC----TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC----CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45566665 889999999998 58899999999999999987654 7889999999999999999999999999986
Q ss_pred CccCCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 003353 300 ECSLDGSTYELMIPSL-AKSGRLDAAIK----LFQEMKER-NFR-PSFNIFASLVDSMGK---------AGRLDTSMKVY 363 (827)
Q Consensus 300 g~~pd~~t~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~-p~~~t~~~li~~~~~---------~g~~~~A~~~~ 363 (827)
.|+...|...+... ...|+.++|.+ +|++..+. |.. ++...|...+....+ .|+++.|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 36888887777533 45677777665 77776643 443 356788888877655 78999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHH
Q 003353 364 MEMQGCGHRPSAPMYVSLIESY-------------AKAGKLDTALRLWDEMR------IAG---FRPN--------FGLF 413 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd--------~~t~ 413 (827)
++.++.........|....... .+.+++++|..+++++. +.. +.|+ ...|
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 9999731111123444332211 12456777887777632 111 2333 2455
Q ss_pred HHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHh-------HHHHHHHHH
Q 003353 414 TMIIESHAKS----GKL----DIAMSIFTDMERAGFLPTPSTYSCLLEMHAS-------SGQVD-------SAMKLYNSM 471 (827)
Q Consensus 414 ~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A~~l~~~m 471 (827)
...+...... ++. ++|..+|++..... +-+...|..++..+.+ .|+++ +|..+|++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 5555433222 232 37788899888753 2378888888888876 68876 899999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 003353 472 TSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549 (827)
Q Consensus 472 ~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (827)
.+. +.| +...|..++..+.+.|++++|.++|+++++..+.. ...|..++..+.+.|++++|.++|++..+.... +.
T Consensus 313 l~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~ 390 (530)
T 2ooe_A 313 IST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 390 (530)
T ss_dssp TTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CT
T ss_pred HHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-ch
Confidence 863 245 47788999999999999999999999999976543 247888888888999999999999999875322 22
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC
Q 003353 550 FIVRQLFE-SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP 628 (827)
Q Consensus 550 ~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~ 628 (827)
..+..... .+...|+.++|..+|++.++..+. +...|..++..+.+.|+.++|+.+++......+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~------------- 456 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS------------- 456 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-------------
Confidence 22222211 234689999999999999887543 688999999999999999999999987654221
Q ss_pred ccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 629 EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
..|.....+|...+....+.|+.+++..+.+++.+.-+
T Consensus 457 ---------------------~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 457 ---------------------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp ---------------------SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred ---------------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 01111123566778888889999999999999877653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-17 Score=172.07 Aligned_cols=286 Identities=14% Similarity=0.040 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..++..+...|++++|.++|+++.+.. +.+..++..++..+.+.|++++|..+++++.+..+. +...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHH
Confidence 3455567777777888888888888888888776 666677777778888888888888888888776543 66778
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 274 NVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 274 n~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 88888888888 8888888888887653 2256677788888888888888888888887765 3445667778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcC
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG--------FRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~~~~g 424 (827)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...+++..+.. ...+..++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887764 3466777778888888888888888887776531 1223456667777777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003353 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLL 490 (827)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~ 490 (827)
++++|...+++..+.... +...|..+...|.+.|++++|.+.|++..+ +.| +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 777777777777665322 556666677777777777777777777665 334 344555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=169.42 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 348 (827)
+...+..+...+...|++++|+++|+++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555666666666666666666665542 1233445555566666666666666666666654 344556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003353 349 SMGKAG-RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427 (827)
Q Consensus 349 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 427 (827)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|++.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 6666777666666543 234556666666666667777777776666655332 3344555666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--------LRPGLSTYTALLTLLAKRKLVDVA 499 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~~~~g~~~~A 499 (827)
+|.+.++++.+... .+..++..+...|...|++++|...++++.+.. ...+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 66666666665432 245666666666667777777777666665421 022245666666666667777777
Q ss_pred HHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 003353 500 AKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-NNFIVRQLFESC 559 (827)
Q Consensus 500 ~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 559 (827)
.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+.. | +...+..+..++
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Confidence 777766666554444556666666666666666666666665432 3 334444444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=177.56 Aligned_cols=289 Identities=13% Similarity=0.047 Sum_probs=160.3
Q ss_pred ccCChhHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC
Q 003353 173 VINDSDTSLS-LFRWAKRQSWYVP--GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249 (827)
Q Consensus 173 ~~~~~~~Al~-~f~~~~~~~~~~p--~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g 249 (827)
.+++++.|+. .|+.+.....-.| +...+..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCc
Confidence 3466777776 6765554332122 23456677778888888888888888888776 677788888888888888
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH---------------HHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL---------------MIPS 314 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~---------------li~~ 314 (827)
++++|...|+++.+..+. +..+|..+...|...|++++|++.|+++...... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 888888888888776543 6777888888888888888888888887764321 1111111 1222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
+...|++++|.+.++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 225555555555555555443110 34555555555555555555555555555432 2234455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHHcCCHhH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP----------TPSTYSCLLEMHASSGQVDS 463 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~t~~~li~~~~~~g~~~~ 463 (827)
|++.|+++.+... .+..++..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|+.++
T Consensus 270 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 5555555544321 134445555555555555555555555544321110 13444444444555555444
Q ss_pred HHHHHH
Q 003353 464 AMKLYN 469 (827)
Q Consensus 464 A~~l~~ 469 (827)
|..++.
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=174.46 Aligned_cols=286 Identities=13% Similarity=0.014 Sum_probs=145.0
Q ss_pred cCChhHHHH-HHHHhHhCCcc-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 283 KGLPYKAFE-IYESMEKGECS-L--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 283 ~g~~~~A~~-~~~~m~~~g~~-p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.|++++|++ .|++....... | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 55544432110 1 23345556666666666666666666666654 4455566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhc
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM---------------IIESHAKS 423 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---------------li~~~~~~ 423 (827)
|...|+++.+.. +.+..++..+...|...|++++|++.++++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666543 335556666666666666666666666666654321 1111110 12222255
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAK 501 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~ 501 (827)
|++++|...|+++.+..... +..++..+...|.+.|++++|...|+++.+. .| +..++..+...+...|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666555432211 3455555555566666666666666555542 22 24455555555555555555555
Q ss_pred HHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT----------NNFIVRQLFESCMKNALYESAKPL 571 (827)
Q Consensus 502 l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~A~~~ 571 (827)
.++++++..+.....+..+...|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 5555555443333445555555555555555555555554321100 134444455555555555555544
Q ss_pred HH
Q 003353 572 LE 573 (827)
Q Consensus 572 ~~ 573 (827)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-13 Score=163.40 Aligned_cols=375 Identities=11% Similarity=0.107 Sum_probs=237.4
Q ss_pred HHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHH--HHHHHHcCCCCccHHHHhhhCCCCCCHHHHH
Q 003353 91 EEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAK--IVEVVNRWKWGPELETQLDKLQFVPKMVHIT 168 (827)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~~ 168 (827)
..++.+...|.+. +++..|.+.+..++ +|..-..... +...++. ....+...+.++. ..+...++
T Consensus 990 ~~vKaf~~aglp~-------EaieLLEKivl~~s---~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd-~~d~~eIA 1056 (1630)
T 1xi4_A 990 VTVKAFMTADLPN-------ELIELLEKIVLDNS---VFSEHRNLQNLLILTAIKA--DRTRVMEYINRLD-NYDAPDIA 1056 (1630)
T ss_pred HHHHHHHhCCCHH-------HHHHHHHHHHcCCC---cccccHHHHHHHHHHHHHh--ChhhHHHHHHHhh-hccHHHHH
Confidence 3444555566666 77777777764432 2211111111 1111111 2234555555555 44555677
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc
Q 003353 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248 (827)
Q Consensus 169 ~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~ 248 (827)
.++...+.+++|..+|+.+.. .....+.++. ..+++++|.++.++. .+..+|..+..++.+.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence 777778888888888876421 1122233322 667778888777743 3467777888888888
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
|++++|++.|.+. .|...|..++.++.+.|++++|++.+...++.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888888888553 366777778888888888888888887766543 33333334777788887777544332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
+ .++...|..+.+.|...|++++|...|... ..|..+...|++.|++++|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 1 345566667888888888888888888774 367788888888888888888887662
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
+..+|..+..+|...|++..|......+.. +...+..++..|.+.|.+++|+.+++..+... +-....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-----~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 567777777788888888777776654322 55666678888888888888888887776532 222335555555
Q ss_pred HHHh--cCCHHHHHHHHHHHHHCCCCc-------hHhHHHHHHHHHHcCCHHHHH
Q 003353 489 LLAK--RKLVDVAAKILLEMKTMGYSV-------DVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 489 ~~~~--~g~~~~A~~l~~~m~~~g~~~-------~~~~~~li~~y~~~g~~~~A~ 534 (827)
.+++ -+++.++.++|..-.. +++ ...|..++..|.+.|+++.|.
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5554 3455555555553332 211 124677777888888888777
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=169.91 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|...|+++++.. +.+..+|..+...|.+.|++++|+..|+++.+..+. +..+|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 34457788888888899999999999888876 778888888888999999999999999888876543 6788888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLD-----------GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PSFNIF 343 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~ 343 (827)
+...|...|++++|++.|+++.+.. |+ ...+..+...+.+.|++++|.+.++++.+.... .+..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 8888888888888888888887642 22 122233456666677777777777777665421 156666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.... +..++..+..+|.+.
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 777777777777777777777766543 335666666777777777777777777766664322 356666666666666
Q ss_pred CChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHcCCHhHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFL-----------PTPSTYSCLLEMHASSGQVDSAMKLY 468 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~li~~~~~~g~~~~A~~l~ 468 (827)
|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666666666542110 01344555555555555555444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=169.37 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
.+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34456778888888888888888888888876554 77888888888888888888888888887753 23577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 003353 313 PSLAKSGRLDAAIKLFQEMKERNFRPS----------FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYVSL 381 (827)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 381 (827)
.+|...|++++|.+.++++.+.. +.+ ..++..+...+.+.|++++|...++++.+.... .+..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888888888888888887653 111 122233455666666666666666666654311 145566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
...|.+.|++++|++.|+++.+.... +..+|..+..+|.+.|++++|...|+++.+... .+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 66666666666666666666554322 455555555555555666666655555554321 1345555555555555555
Q ss_pred hHHHHHHHHHHH
Q 003353 462 DSAMKLYNSMTS 473 (827)
Q Consensus 462 ~~A~~l~~~m~~ 473 (827)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=176.66 Aligned_cols=287 Identities=10% Similarity=0.059 Sum_probs=123.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..++...++.++|.++++.. +++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae 72 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHH
Confidence 344566778888899988865 2335899999999999999999999854 345668888889999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999977776663 3567788889999999999998887774 2677799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.|..+ ..|..+++++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----- 203 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----- 203 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----
Confidence 99876 35888999999999999999999888 27889999999999999999986555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCC------
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS--GQVDSAMKLYNSMTSAGLRP------ 478 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------ 478 (827)
..+..-...++..|.+.|++++|..+++...... +.....|+-|.-+|++- +++.+.++.|..-. .+.|
T Consensus 204 ~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~ 280 (449)
T 1b89_A 204 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAE 280 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHH
T ss_pred HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence 2233445568888899999999998888877554 34667777777777654 34555555554211 1222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 003353 479 GLSTYTALLTLLAKRKLVDVAAK 501 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~~~A~~ 501 (827)
+...|.-+...|.+.++++.|..
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHH
Confidence 34457777777778888887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-14 Score=163.00 Aligned_cols=222 Identities=11% Similarity=-0.061 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-----
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD-----SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----- 264 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 264 (827)
.....|+.+...+...|++++|++.|++.++. +....+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568899999999999999999999887653 10012456778999999999999999999998877542
Q ss_pred CC--CCCHHHHHHHHHHHHHc--CChhHHHHHHHHhHhCCccC-CHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCC
Q 003353 265 DC--KIDTQSYNVLMTLFLNK--GLPYKAFEIYESMEKGECSL-DGSTYELMIPS---LAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 265 g~--~p~~~~~n~li~~~~~~--g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
+. .....+++.+..++... +++++|++.|++..+.. | +...+..+..+ +...++.++|.+.+++..+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 10 11356676666666554 46889999999988743 4 34455544444 345677888999998888875
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 337 RPSFNIFASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412 (827)
Q Consensus 337 ~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 412 (827)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 4566667666655554 457788999998887765 456778888999999999999999999998876433 5566
Q ss_pred HHHHHHHHH
Q 003353 413 FTMIIESHA 421 (827)
Q Consensus 413 ~~~li~~~~ 421 (827)
+..+...|.
T Consensus 284 ~~~lg~~y~ 292 (472)
T 4g1t_A 284 HCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=160.86 Aligned_cols=230 Identities=11% Similarity=-0.000 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+.+.|++++|...|+++.+..+. +..+|..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 45566666777777777777777777665 666777777777777777777777777777665433 5667777777
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELM--------------IP-SLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 343 (827)
.|...|++++|++.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 777777777777777777654211 11122111 11 1344455555555555555443 2344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|.+.++++.+... .+..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 555555555555555555555554432 22344444555555555555555555555444321 1334444444444444
Q ss_pred CChhHHHHHHHHHH
Q 003353 424 GKLDIAMSIFTDME 437 (827)
Q Consensus 424 g~~~~A~~~~~~m~ 437 (827)
|++++|.+.++++.
T Consensus 254 g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 254 SQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=191.91 Aligned_cols=118 Identities=10% Similarity=0.195 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKE---RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 305 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
..||+++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655542 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 382 IESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 382 i~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666654444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=171.01 Aligned_cols=280 Identities=11% Similarity=0.122 Sum_probs=97.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
+.|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++
T Consensus 15 ~~~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 556666666666654 22346777777777777777777777442 355567777777777777777
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77755555442 3445666667777777777777666663 255567777777777777777777777655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 003353 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448 (827)
Q Consensus 369 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 448 (827)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 24666777777777777777777666 156677777777777777777744433321 233334
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc-----h--HhHHH
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR--KLVDVAAKILLEMKTMGYSV-----D--VSASD 519 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~-----~--~~~~~ 519 (827)
..++..|.+.|++++|..+++..+... +-....|+-+.-+|++- +++.+..+.|.. +.++++ . ..|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 456666777777777777777666432 23344555555555542 333334433331 112222 1 13566
Q ss_pred HHHHHHHcCCHHHHHH
Q 003353 520 VLMVYIKDGSVDHALR 535 (827)
Q Consensus 520 li~~y~~~g~~~~A~~ 535 (827)
++..|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666666654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-15 Score=158.48 Aligned_cols=262 Identities=8% Similarity=0.004 Sum_probs=221.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...+..+...+++++|+.+|+.+.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~ 98 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 98 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCCHHHHHHHHHH
Confidence 445677778899999999999998875 5678899999999999999999999999999987 8889999999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL--------------MT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|...|++++|.+.++++.+..+. +...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999886543 33333333 22 3667889999999999998764 33788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 389 (827)
.+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+.+.|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876 5678899999999999999999999999998764 446889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRP-----------NFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~p-----------d~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
++++|.+.++++.+..... +..++..+..++.+.|+.++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998754332 4677888888888888888888887653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-17 Score=188.47 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHh---CCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003353 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344 (827)
Q Consensus 268 p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 344 (827)
--..|||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 003353 345 SLVDSMGKAGR-LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN------FGLFTMII 417 (827)
Q Consensus 345 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~li 417 (827)
+||+++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999999877664 334444444 3344444 45556677
Q ss_pred HHHHhcCC
Q 003353 418 ESHAKSGK 425 (827)
Q Consensus 418 ~~~~~~g~ 425 (827)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 77777653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-12 Score=154.92 Aligned_cols=378 Identities=13% Similarity=0.128 Sum_probs=254.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSW-YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~-~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+.+...+++.+|+++++.+...+. |.-+....+.++....+. +..+..+...+.-.. ....+...+.
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----------d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----------cHHHHHHHHH
Confidence 4445556666666666666664322 223344445555555444 334444444433211 1223566677
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 7888888888888753 13333344433 5577888888877552 46778888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.|.+. .|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 88653 455777788888888888888888888777653 33333335788888888887544332 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 486 (827)
.++...|..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345666777888888888888888888874 36888888888888888888888876 255788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN--AL 564 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~ 564 (827)
..+|...|++..|......+.. .+ ..+..++..|.+.|.+++|+.+++..+... +-...+|+.+...|++. ++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv---~~-deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVV---HA-DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhc---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 8888888888888776654221 11 245588889999999999999998887544 33445676666666654 45
Q ss_pred HHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 565 YESAKPLLETYVESAAK------VDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 565 ~~~A~~~~~~m~~~g~~------pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
..++.++|..-.. +. -+...|.-+.--|.+.|+++.|...+
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5666666654322 22 25678999999999999999987544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-14 Score=158.74 Aligned_cols=390 Identities=14% Similarity=0.013 Sum_probs=244.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCC
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQ-------SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISL 234 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~-------~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~ 234 (827)
.++.+....|+.++|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++..+... ......
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 3577788899999999999987652 11234567899999999999999999999998876321 111345
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH---HHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 235 FSAYNRVIQYLAKAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF---LNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 235 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
..+++.+..++.+.| ++++|+..|++..+..+. +...+..+..++ ...++.++|++.+++..+.. +.+..++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 678888877777765 699999999999987654 666666666554 44678889999999887753 23566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 310 LMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 310 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
.+...+.. .|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+..++..+..+|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 66655554 467889999999998876 6678889999999999999999999999998764 34667777777666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
...+....+.. ...........+..++|...++...+.... +..++..+...|...|++++|.
T Consensus 292 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 292 RAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHH
Confidence 43221111000 000011111223456777777777665332 4456777778888888888888
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 466 KLYNSMTSAGLRPGLS--TYTALLT-LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 466 ~l~~~m~~~g~~pd~~--t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..|++.++....+... .+..+.. .....|+.++|++.|.+.++..+..... .+..+.+.+++++..+
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~----------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK----------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH----------HHHHHHHHHHHHHHHH
Confidence 8888887743222211 1222222 2346788888888888888765443211 1112334445555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 003353 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-VDLVLY 587 (827)
Q Consensus 543 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~ 587 (827)
.+ +.+..++..+...|...|++++|++.|++.++.+.. |+..+|
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 33 224557777777888888888888888888876654 444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-14 Score=149.79 Aligned_cols=248 Identities=11% Similarity=0.115 Sum_probs=115.2
Q ss_pred HcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003353 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 361 (827)
..|++.+|+..+++...............+.++|...|++++|...++. . -+|+..++..+...+...|+.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555554443321111112333444555555555555543322 1 13344444555555555555555555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 362 VYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 362 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..++..|.+.|++++|.+.++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 555554443222 333344444555555555555555544 2344455555555555555555555555555432
Q ss_pred CCCCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhH
Q 003353 441 FLPTPSTY---SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517 (827)
Q Consensus 441 ~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 517 (827)
|+.... ...+..+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|++.++++++..+....++
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 221100 11122222335555555555555553 122444555555555555555555555555555444433455
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhh
Q 003353 518 SDVLMVYIKDGSVDH-ALRWLRFMGS 542 (827)
Q Consensus 518 ~~li~~y~~~g~~~~-A~~~~~~m~~ 542 (827)
..++..+...|+.++ +.++++++.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555543 3455555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-14 Score=148.89 Aligned_cols=254 Identities=15% Similarity=0.084 Sum_probs=149.0
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 323 (827)
-....|+++.|+..++......+.........+.++|...|++++|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666666655543322211234444556666666666666544331 23455566666666666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 324 AIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 324 A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666554323 444555555666666666666666665 3455666666666777777777777777666
Q ss_pred HcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-
Q 003353 403 IAGFRPNFGLF---TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP- 478 (827)
Q Consensus 403 ~~g~~pd~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 478 (827)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++.++. .|
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~ 232 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSG 232 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 653 332111 112233334466777777777776652 336666777777777777777777777776663 34
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCC
Q 003353 479 GLSTYTALLTLLAKRKLVDV-AAKILLEMKTMGYS 512 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~ 512 (827)
+..++..++..+...|+.++ +.++++++++..+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 45566666666666776654 45666776665443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=134.29 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc--CC----HHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS--LD----GSTYE 309 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd----~~t~~ 309 (827)
..+..+...+.+.|++++|...|++..+.. .+..+|..+..+|...|++++|++.+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555556666666666666666655544 45555666666666666666666666655442111 11 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 389 (827)
.+...+.+.|++++|.+.++++.+.. |+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 55556666666666666666655532 221 23444455566666666555432 123345555555555566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
++++|++.+++..+.... +..++..+...|.+.|++++|...+++..+... .+..+|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666555554322 445555555555555555555555555554322 134555555555555555555555555
Q ss_pred HHHH
Q 003353 470 SMTS 473 (827)
Q Consensus 470 ~m~~ 473 (827)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=136.25 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+++...+..+...+.+.|++++|...|++.++.. |.+..++..+...+.+.|++++|+..|++..+..+. +...|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHH
Confidence 3455667777777777777777777777777766 777777777777777777777777777777766543 66677
Q ss_pred HHHHHHHHHc-----------CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 274 NVLMTLFLNK-----------GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342 (827)
Q Consensus 274 n~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 342 (827)
..+...+... |++++|++.|++..+... -+...+..+..++...|++++|.+.|+++.+.+ .+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 7777777666 555555555555544321 134444455555555555555555555555444 34445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|++.+++
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555554432 22344444444555555555555544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=133.69 Aligned_cols=221 Identities=10% Similarity=0.042 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL--PT----PSTYSCL 451 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~l 451 (827)
|..+...+...|++++|++.|++..+.. .+..++..+..+|...|++++|.+.+++..+.... ++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 33344444444444444444444444444332110 01 2444444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
...|...|++++|...|+++.+ +.|+. ..+.+.|++++|.+.++++....+.....+..+...|...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 4455555555555555555444 22332 22333444555555555555533222234445555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~ 611 (827)
+|...++++.+... .+..++..+...|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|...++...
T Consensus 157 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554321 13444555555555555555555555555554332 44555555555555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-12 Score=129.28 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+...|++++|.+.|+++++.. +.+..++..+...|.+.|++++|.+.|+++.+..+. +...|..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHH
Confidence 4577888888889999999999999988876 777888888999999999999999999988876543 77888888
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
...|...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 888889999999999998887733334 45677778888888888888888888888765 4567788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
+++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888887754 3566777788888888888888888888887754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=140.32 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
..+|..+...+.+.|++++|++.++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 3456666666677777777777777777666 6667777777777777775 77777777777766554 6667777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AG 354 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g 354 (827)
+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|++.++++++.+ +-+...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 777777777777777777777664322 55667777777777777777777777777665 4556667777777666 44
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 003353 355 RLDTS-----MKVYMEMQGCGHRPSAPMYVSLIESYAKAG--KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG--- 424 (827)
Q Consensus 355 ~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 424 (827)
..++| +..|++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +. -..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 44555 35666665543 234556666666666655 466666666665 22 2224555666666666543
Q ss_pred ------ChhHHHHHHHHH
Q 003353 425 ------KLDIAMSIFTDM 436 (827)
Q Consensus 425 ------~~~~A~~~~~~m 436 (827)
.+++|.++|+++
T Consensus 327 ~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 327 CDNKEDILNKALELCEIL 344 (382)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 235666666665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=131.77 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|++...+..+...+.+.|++++|...|++..+..+. +...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 455566667777777777777777777777765543 66677777777777777777777777776643 1245566666
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003353 312 IPSLAKS-----------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380 (827)
Q Consensus 312 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 380 (827)
..++.+. |++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 66666666666655543 3344555555555556666666666665555544 35555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 381 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|...|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555665555555555554322 3445555555555555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=124.06 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.|+++.+..+. +..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 45567777777778888888888888877765 666777777777888888888888888777765433 6667777
Q ss_pred HHHHHHHc-CChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 276 LMTLFLNK-GLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 276 li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
+...+... |++++|.+.++++.+.+..|+ ...+..+..++.+.|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 77777777 777777777777776322232 4566667777777777777777777776654 34566677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665432145556666666666777777777777666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=138.99 Aligned_cols=247 Identities=11% Similarity=-0.029 Sum_probs=173.1
Q ss_pred cCChhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 174 INDSDTSLSLFRWAKRQSWY--VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~--~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
.+++++|+..|+.+.+.... +.+..+|..+...+...|++++|...|+++++.. +.+..++..+...|...|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHccCH
Confidence 46778888888888875321 1245678888888888999999999999988876 77888888899999999999
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
++|...|++..+..+. +..+|..+...|...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999888876543 6778888888888888888888888888774 345445555555667778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 332 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
.... +++...+. ++..+...++.++|...+.+..+.... .+..+|..+...|.+.|++++|...|++..+.. |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7654 34444443 666677777778888888777643211 014566677777777777777777777776643 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 122234555566666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-12 Score=137.48 Aligned_cols=242 Identities=12% Similarity=0.127 Sum_probs=206.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
...++...+++++|++.|+.+.+.+ +-+..+|+.+..++.+.|+ +++|+..|+++++.. +.+..+|+.+..++
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
Confidence 3666778899999999999999976 5678899999999999997 999999999999988 88999999999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAA 324 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A 324 (827)
.+.|++++|+..|+++.+..+. +..+|..+..++.+.|++++|++.|+++++.... +...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999988765 8999999999999999999999999999986433 78899999999999 6665887
Q ss_pred -----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------
Q 003353 325 -----IKLFQEMKERNFRPSFNIFASLVDSMGKAG--RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG-------- 389 (827)
Q Consensus 325 -----~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------- 389 (827)
.+.++++++.. +-+...|+.+..++.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence 58899998876 567889999999999988 689999999988 433 456788999999998874
Q ss_pred -CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHH
Q 003353 390 -KLDTALRLWDEM-RIAGFRPN-FGLFTMIIESHA 421 (827)
Q Consensus 390 -~~~~A~~l~~~m-~~~g~~pd-~~t~~~li~~~~ 421 (827)
..++|+++++++ .+. .|+ ...|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 359999999998 554 333 445555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=131.98 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+|..+...|.+.|++++|.+.|++..+
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444445555555555555555555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-09 Score=127.26 Aligned_cols=429 Identities=8% Similarity=0.024 Sum_probs=301.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK---LEMSYC 256 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 256 (827)
.+..|+.....+ +-|..+|..++..+.+.+.++.+..+|+.++... |.+...|..-+..-.+.|. ++.+..
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f----P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF----PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 455666666655 5799999999999999999999999999999986 8899999999999999999 999999
Q ss_pred HHHHhHhCCC-CCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHhHh-CCc-cCC-HHHHHHHHHHHH--------
Q 003353 257 CFKKVLDSDC-KIDTQSYNVLMTLFLNKGLP--------YKAFEIYESMEK-GEC-SLD-GSTYELMIPSLA-------- 316 (827)
Q Consensus 257 ~~~~m~~~g~-~p~~~~~n~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~li~~~~-------- 316 (827)
+|++.....+ .|++..|...+.-..+.+.. +.+.++|+.... .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999987642 37888999888766655543 334578877654 365 454 467777776543
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCCC--------
Q 003353 317 -KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-------------AGRLDTSMKVYMEMQG--CGHR-------- 372 (827)
Q Consensus 317 -~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~~-------- 372 (827)
..++++.+.++|++++......-..+|......--. ..+++.|...+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 344578899999998853222222344322211111 1234445555555332 1111
Q ss_pred -------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 373 -------P-----S---APMYVSLIESYAKAG-------KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 373 -------p-----~---~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
| + ...|...+..--..+ ..+.+..+|++....- .-+...|-..+.-+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 235555554433322 1344567788887753 336788888888888899999996
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 003353 431 -SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG---------LRPG------------LSTYTALLT 488 (827)
Q Consensus 431 -~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~li~ 488 (827)
++|++.... .+.+...|-..+....+.|++++|.++|+++++.. -.|+ ...|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999998864 34467778888999999999999999999988631 0142 236777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCchHhHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 489 LLAKRKLVDVAAKILLEMKTM-GYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 566 (827)
...+.|..+.|..+|..+++. +......|...+..-.+. ++.+.|.++|+...+. ..-+...+...+.-....|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 888889999999999999986 322223333333333344 4589999999999875 3335556667777777889999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCch
Q 003353 567 SAKPLLETYVESAAKV--DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~ 617 (827)
.|..+|++.++....+ ....|...+.--.+.|+.+.+..+.+++....|+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999998876532 45688888888889999999999999887766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-11 Score=122.38 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
++.++..+...+.+.|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 44556666666666666666666666666532 34555666666666 666666666666666543 555
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 272 SYNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIF 343 (827)
Q Consensus 272 ~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 343 (827)
++..+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|.+.+++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 66666666666 666666666666665543 45555666666666 666666666666666544 33455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 344 ASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 344 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 555555555 566666666666655543 34455555555555 566666666666555543 2344455
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHc
Q 003353 416 IIESHAK----SGKLDIAMSIFTDMERA 439 (827)
Q Consensus 416 li~~~~~----~g~~~~A~~~~~~m~~~ 439 (827)
+...|.+ .+++++|.+.|++..+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555 55555555555555544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-12 Score=129.33 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVLM 277 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~li 277 (827)
+......+.+.|++++|+..|+++++.. +.+..++..+...|.+.|++++|...|++..+.+..+ ...+|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3334444444555555555555544443 3333444444444444444444444444444421111 112244444
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
..+...|++++|++.|++..+... .+..++..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 444444444444444444443211 1223344444444444444444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=138.40 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=100.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
..|++++|+..|+++.+....+.+.+..++..+...|...|++++|...|+++.+..+. +..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 34666777777777766531111234556666666677777777777777666655433 56666666666666666666
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
|++.|++..+.. +.+..++..+..++.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666665532 1234555555666666666666666666655543 2222222233333444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 369 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
.. +++...+. ++..+...++.++|++.+++..
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 32 22222222 3334444444455555444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-11 Score=122.14 Aligned_cols=222 Identities=9% Similarity=-0.048 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
.++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444445555555555555555555442 233444445555555 555555555555555443 44444455
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 417 IESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 417 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555555442 44455555555555 555555555555555533 3344444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003353 489 LLAK----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560 (827)
Q Consensus 489 ~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 560 (827)
.|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 5554 555555555555555542 22344455555555 5566666666655555431 333444444555
Q ss_pred H----cCCHHHHHHHHHHHHHCC
Q 003353 561 K----NALYESAKPLLETYVESA 579 (827)
Q Consensus 561 ~----~g~~~~A~~~~~~m~~~g 579 (827)
+ .|++++|.+.|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 556666666666655544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=145.28 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=201.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL---EMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+...+.+.|++++|.++|++..+.+ +..++..|...|...|+. ++|...|++..+. +...+..|...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 4555667777777877777776654 233444566666666666 7777777777653 44556666664
Q ss_pred HHHcC-----ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 280 FLNKG-----LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD---AAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 280 ~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
+...+ ++++|++.|++..+.|.. ..+..|...|...+..+ ++.+.+....+.|. ...+..|...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 44444 567778788777776533 25555666666555433 34444444444442 345666777777
Q ss_pred hcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 003353 352 KAGRLDTSMK----VYMEMQGCGHRPSAPMYVSLIESYAKAG---KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS- 423 (827)
Q Consensus 352 ~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~- 423 (827)
..+.++++.. ++..... .+...+..+...|.+.| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 7774444333 3333332 22236777777777788 788888888888777643 555445566666544
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 003353 424 ---GKLDIAMSIFTDMERAGFLPTPSTYSCLLEM-H--ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK--- 494 (827)
Q Consensus 424 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 494 (827)
+++++|.+.|++.. .| +...+..|... | ...++.++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 67888888888776 32 55566666665 3 45778888888888888765 5666666666666 44
Q ss_pred --CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCC
Q 003353 495 --LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK----NAL 564 (827)
Q Consensus 495 --~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~ 564 (827)
++++|.+.|++.. .| .......|..+|.. ..+.++|..+|++..+.|.. + ....|...|.. ..+
T Consensus 300 ~~d~~~A~~~~~~Aa-~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR--EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN-S--ADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT--CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT-T--HHHHHHHHHHSCTTBCCC
T ss_pred CCCHHHHHHHHHHHh-CC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH-H--HHHHHHHHHHhCCCCCCC
Confidence 8888888888777 22 23456666666665 34888888888888877642 2 23334344442 347
Q ss_pred HHHHHHHHHHHHHCCCC
Q 003353 565 YESAKPLLETYVESAAK 581 (827)
Q Consensus 565 ~~~A~~~~~~m~~~g~~ 581 (827)
.++|..+|++..+.|..
T Consensus 374 ~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 88888888888877754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=130.52 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....|..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|++++|...|+++.+..+. +..+|..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHH
Confidence 34466666777777777777777777777655 666777777777777777777777777777665433 5666777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 7777777777777777777766542 2245566666666666777777777776666554 3455566666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
+++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666665543 234555666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-11 Score=121.47 Aligned_cols=199 Identities=13% Similarity=-0.000 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444443321 1123344444444444444444444444444432 233444444555555
Q ss_pred hc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 352 KA-GRLDTSMKVYMEMQGCGHRPS-APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 352 ~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
.. |++++|...++++.+.+..|+ ...+..+...+.+.|++++|++.++++.+.... +...+..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555544111121 334444555555555555555555555443221 344445555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555554432212444444444555555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-11 Score=124.73 Aligned_cols=199 Identities=9% Similarity=0.004 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 350 (827)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344455555555555555555555554432 1234455555555555555555555555555443 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 351 GKAGRLDTSMKVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|.+.++++.+.... +...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555421122 2344455555555555555555555555543321 344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
...++++.+... .+...+..+...+...|+.++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555544321 2344444555555555555555555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-12 Score=142.67 Aligned_cols=347 Identities=13% Similarity=0.084 Sum_probs=241.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
+...+...+++++|++.|+.+.+.. ++.++..+...+...|+. ++|...|++.... +..++..|..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHH
Confidence 4566667789999999999988753 344566666777777888 8999999988743 4667777777
Q ss_pred HHHHcC-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 244 YLAKAD-----KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK---AFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 244 ~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~---A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
.+...+ ++++|...|++..+.|.. ..+..|...|...+..++ +.+.+......| +......+...|
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLY 151 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 666655 789999999999987643 377778888887665444 555555555444 455677788888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG---RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA---- 388 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 388 (827)
...+.++++........+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888866555554333333222333348889999999999 9999999999999988 56777667777777655
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----C
Q 003353 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIES-H--AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG-----Q 460 (827)
Q Consensus 389 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-----~ 460 (827)
+++++|++.|++.. .| +...+..+... | ...+++++|.+.|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999987 43 55666667666 4 46899999999999999876 7788888888887 55 9
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHH
Q 003353 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDH 532 (827)
Q Consensus 461 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~ 532 (827)
+++|+..|++.. . -+...+..|...|.. ..+.++|...|+...+.|. ......|..+|.. ..+.++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHH
Confidence 999999999887 3 356677777777766 4499999999999998765 3356677777764 468999
Q ss_pred HHHHHHHHhhCCC
Q 003353 533 ALRWLRFMGSSGI 545 (827)
Q Consensus 533 A~~~~~~m~~~~~ 545 (827)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999888773
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-12 Score=127.56 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
...+|..+...+.+.|++++|...|+++.+..+. +...|..+...+...|++++|++.|++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445555666666666666666666666654432 55566666666666666666666666665432 124455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
.+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655543 3344555555555555555555555555555432 2244455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|++.++++.+... .+..++..+...|.+.|++++|.+.++++.+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555555544322 1344455555555555555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-09 Score=120.83 Aligned_cols=435 Identities=11% Similarity=0.072 Sum_probs=295.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC---hhH
Q 003353 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL---PYK 288 (827)
Q Consensus 212 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~---~~~ 288 (827)
..++.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++...-+ .....|...+..-.+.+. .+.
T Consensus 47 ~~~d~i~~lE~~l~~n----p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ----PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHH
Confidence 3455566677777777 89999999999999999999999999999998644 478889999988888888 999
Q ss_pred HHHHHHHhHhCC-ccCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH-----
Q 003353 289 AFEIYESMEKGE-CSLDGSTYELMIPSLAKSGRL--------DAAIKLFQEMKE-RNF-RP-SFNIFASLVDSMG----- 351 (827)
Q Consensus 289 A~~~~~~m~~~g-~~pd~~t~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~t~~~li~~~~----- 351 (827)
+.++|++..... ..|++..|...+.-..+.++. +.+.++|+.+.. .|. .+ +...|...+....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998863 247888998888776665554 345578887664 355 44 4578888887654
Q ss_pred ----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHH----------HHcCCHHHHHHHHHHHHHc--CCC-----
Q 003353 352 ----KAGRLDTSMKVYMEMQGCGHRPSAPMYVSL---IESY----------AKAGKLDTALRLWDEMRIA--GFR----- 407 (827)
Q Consensus 352 ----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~----------~~~g~~~~A~~l~~~m~~~--g~~----- 407 (827)
..++++.+.++|++++......-..+|... ...+ -...+++.|...+.++... ++.
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 234578899999999853222122344322 1111 0112344555556554321 211
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003353 408 ----------P-----N---FGLFTMIIESHAKSG-------KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462 (827)
Q Consensus 408 ----------p-----d---~~t~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 462 (827)
| + ...|...+.---..+ ..+.+..+|++.+.. +.-+...|-..+.-+.+.|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 1 133444444322222 123456678887765 2337788888888888889988
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc-----------h--HhHHH
Q 003353 463 SAM-KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY---------SV-----------D--VSASD 519 (827)
Q Consensus 463 ~A~-~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~~-----------~--~~~~~ 519 (827)
+|. ++|++.... ++.+...|...+....+.|+++.|.++|+.++.... .| + ..|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 996 999998873 333555677778888889999999999999886420 02 1 24666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS-GIRTNNFIVRQLFESCMKN-ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
.+....+.|..+.|..+|.++.+. +..+ ..+|...+..-.+. ++.+.|..+|+..++. ..-+...|...++-....
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 667777889999999999999876 3222 22232222222233 4589999999999887 333677778888888888
Q ss_pred CCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHH
Q 003353 598 QDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677 (827)
Q Consensus 598 g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~ 677 (827)
|+.+.|+.+|+......++ +.....+|...++.-.+.|..+.+..
T Consensus 518 ~~~~~AR~lferal~~~~~-----------------------------------~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISD-----------------------------------SHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSS-----------------------------------TTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-----------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999876543221 00012356788888889999999999
Q ss_pred HHHHHHHCCCCCC
Q 003353 678 VWKVAYENKLFPK 690 (827)
Q Consensus 678 v~~~~~~~~~~p~ 690 (827)
+.+++.+.-|..+
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999998876544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-12 Score=137.06 Aligned_cols=302 Identities=11% Similarity=-0.014 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CC
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DC 266 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~ 266 (827)
.....+......+...|++++|...|+++++.. +.+ ..++..+...|...|++++|...|++..+. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 445566667777777888888888888777765 444 346677777777777777777777765431 11
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-CC----HHHHHHHHHHHHHcCC--------------------
Q 003353 267 KI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-LD----GSTYELMIPSLAKSGR-------------------- 320 (827)
Q Consensus 267 ~p-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~li~~~~~~g~-------------------- 320 (827)
.| ...+|..+...|...|++++|+..+++..+.... ++ ..++..+...+...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 11 2345666666777777777777777666542100 11 2355555556666666
Q ss_pred HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 003353 321 LDAAIKLFQEMKER----NFR-PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 321 ~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A 394 (827)
+++|.+.+++..+. +.. ....++..+...|...|++++|...+++..+... .++..
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------ 224 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------ 224 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH------------------
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH------------------
Confidence 55555555544321 100 0112344444444444555555444444432100 00100
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 225 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 225 -------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 00124444555555555555555555554421000 01 3455556666666666666666666
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--HhHHHHHHHHHHcCCHH
Q 003353 470 SMTSA----GLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD--VSASDVLMVYIKDGSVD 531 (827)
Q Consensus 470 ~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~--~~~~~li~~y~~~g~~~ 531 (827)
+..+. +-.+. ..++..+...|...|++++|.+.+++..+. +..+. .++..+...|...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 65541 11111 335566666677777777777777766543 22222 24555666666666553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-12 Score=138.57 Aligned_cols=277 Identities=12% Similarity=-0.006 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhC----C-CCC
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----SAYNRVIQYLAKADKLEMSYCCFKKVLDS----D-CKI 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p 268 (827)
..+..+...+...|++++|...|+++++.. +.+. .++..+...|...|++++|...|++..+. + ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345566777788888888888888888875 4444 46778888888888888888888776542 1 112
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----C-ccCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----E-CSLDGSTYELMIPSLAKSGR-----------------LDAAIK 326 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~t~~~li~~~~~~g~-----------------~~~A~~ 326 (827)
...+|..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3456777777777888888888877776542 1 11123356666666677777 666666
Q ss_pred HHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 327 LFQEMKER----NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 327 ~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
.+++..+. +- .....++..+...|...|++++|...+++..+... .++..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 260 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA------------------------ 260 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH------------------------
Confidence 65554331 10 01122444455555555555555555555442100 00100
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-
Q 003353 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-----PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA- 474 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~- 474 (827)
....++..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+.
T Consensus 261 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 261 -------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp -------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00123444444455555555555555444321000 01344555556666666666666666655441
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 475 ---GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 475 ---g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
+..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0001 1235556666677777777777777777664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-12 Score=137.39 Aligned_cols=130 Identities=11% Similarity=-0.100 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS----VD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~--~ 515 (827)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.++++.+.... .. .
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555556666666666666655544100 011 124455555566666666666666655442111 01 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSG----IRT-NNFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+..+...|...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555566666655555544311 000 01233344444445555555555555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=135.61 Aligned_cols=307 Identities=15% Similarity=0.058 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhC----CccC
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECSL 303 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 303 (827)
......+......+.+.|++++|...|++..+.++. + ..+|..+...|...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445556667777777777777777777777765432 3 345667777777777777777777765432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 003353 304 -DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PS----FNIFASLVDSMGKAGR-------------LDTSMKVYM 364 (827)
Q Consensus 304 -d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~-------------~~~A~~~~~ 364 (827)
...++..+...+...|++++|...++++.+.... ++ ..++..+...|...|+ .++|...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~-- 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA-- 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence 1335555666666666666666666665432100 01 2244444455555555 0000000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA----GFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 365 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
+++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444444433221 1001 1345666667777777777777777766532
Q ss_pred CC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 440 GF-LPT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 440 g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.. .++ ..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 012 347888999999999999999999988752 11111 457888888999999999999999998764
Q ss_pred CC----Cch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHHcCCHHH
Q 003353 510 GY----SVD--VSASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQLFESCMKNALYES 567 (827)
Q Consensus 510 g~----~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~ 567 (827)
.. .+. ..+..+...|.+.|++++|.+.+++..+. +..+. ..++..+...+...|+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 22 222 25678888999999999999999987743 22222 4466777778888887754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=129.40 Aligned_cols=201 Identities=13% Similarity=0.042 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCC-C
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCK-I 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p 268 (827)
..+......+...|++++|...|+++++.. +.+ ..++..+...|...|++++|...+++..+. +.. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 344555666777788888888888777765 444 356677777777778877777777765432 111 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-LD----GSTYELMIPSLAKSGR--------------------LDA 323 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~li~~~~~~g~--------------------~~~ 323 (827)
...++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2456666777777777777777777776442100 11 2356666666666666 666
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 003353 324 AIKLFQEMKER----NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPS----APMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 324 A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 393 (827)
|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 66666554432 10 01123455555566666666666666655542100 001 1244445555555555555
Q ss_pred HHHHHHHHH
Q 003353 394 ALRLWDEMR 402 (827)
Q Consensus 394 A~~l~~~m~ 402 (827)
|.+.+++..
T Consensus 242 A~~~~~~al 250 (338)
T 3ro2_A 242 ASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-10 Score=118.36 Aligned_cols=216 Identities=9% Similarity=0.088 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHhHh-CCCCCCHHHHHHHHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK-------ADKL-------EMSYCCFKKVLD-SDCKIDTQSYNVLMT 278 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~p~~~~~n~li~ 278 (827)
++|..+|++.+... |.+..+|..++..+.. .|++ ++|..+|++..+ ..+. +...|..++.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 56777777777765 6777777777776653 3554 667777776665 2322 5556666666
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCC
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLD-GS-TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG-KAGR 355 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~ 355 (827)
.+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.++|+++.+.+ +.+...|........ ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 666666777777777666653 232 22 56666666666666666666666666543 233333433322211 2455
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRP--NFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--d~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
+++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666665555432 2244555555555555555555555555555532 222 234455555555555555555555
Q ss_pred HHHHHH
Q 003353 433 FTDMER 438 (827)
Q Consensus 433 ~~~m~~ 438 (827)
++++.+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=129.78 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS----VD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~--~ 515 (827)
++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+.... +. .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444455555555555555555555543100 011 124445555555666666666666555432111 11 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSG----IRT-NNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+..+...|...|++++|...++++.+.. -.+ ...++..+...|.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555666666666666665554321 000 122444455555556666666666655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-10 Score=120.63 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 003353 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-------ESRDF-------DGMLSLFDEMVH-DSSKNGISLFSAYNRVI 242 (827)
Q Consensus 178 ~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~-------~~g~~-------~~A~~l~~~m~~-~~~~~~~~~~~~~~~li 242 (827)
++|+..|+.+.... +.++..|..++..+. +.|++ ++|..+|++.++ .. +.+..+|..++
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~----p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----KKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC----cccHHHHHHHH
Confidence 56889999998864 567889988888776 35886 999999999998 45 77889999999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH-HcCC
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQ-SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA-KSGR 320 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~-~~g~ 320 (827)
..+.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|.++|++..+... .+...|........ ..|+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999986543 343 899999999999999999999999988642 34445544433322 2699
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRP--SAPMYVSLIESYAKAGKLDTALRL 397 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~l 397 (827)
+++|.++|+++.+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998874 5578899999999999999999999999999863 344 567899999999999999999999
Q ss_pred HHHHHHcC
Q 003353 398 WDEMRIAG 405 (827)
Q Consensus 398 ~~~m~~~g 405 (827)
++++.+..
T Consensus 264 ~~~a~~~~ 271 (308)
T 2ond_A 264 EKRRFTAF 271 (308)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=111.84 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
++..|..+...+.+.|++++|++.|++.++.. |.+..++..+..+|.+.|++++|...++......+. +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHH
Confidence 44566666666666666666666666666665 666666666666666666666666666666654433 5555666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...++++.|.+.+.+..... +-+...+..+..++.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 6666666666666666666665532 2245556666666666666666666666666554 4455566666666666666
Q ss_pred HHHHHHHHHHHHhC
Q 003353 356 LDTSMKVYMEMQGC 369 (827)
Q Consensus 356 ~~~A~~~~~~m~~~ 369 (827)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-11 Score=133.54 Aligned_cols=210 Identities=10% Similarity=0.082 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF-DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (827)
.+.|+..++...... +.+...|..+...+...|++ ++|++.|++.++.. +.+..+|..+...|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334455555444432 34555666666666666666 66666666666654 555666666666666666666666
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc--------
Q 003353 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNK---------GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS-------- 318 (827)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~n~li~~~~~~---------g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~-------- 318 (827)
+.|++..+.. |+...|..+...|... |++++|++.|++..+.. +-+...|..+..+|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 6666665543 3445555566666555 55555555555555432 11344555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFR---PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
|++++|.+.|+++.+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|+
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 2 344555555555555555555555555554432 223344445555555555555554
Q ss_pred HH
Q 003353 396 RL 397 (827)
Q Consensus 396 ~l 397 (827)
+.
T Consensus 313 ~~ 314 (474)
T 4abn_A 313 ES 314 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-11 Score=133.87 Aligned_cols=223 Identities=10% Similarity=0.019 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~ 291 (827)
++++++.+++..... +.+...+..+...|...|++ ++|++.|++..+..+. +...|..+..+|.+.|++++|++
T Consensus 84 ~~~al~~l~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555544433 45566666666666666666 6666666666554432 45566666666666666666666
Q ss_pred HHHHhHhCCccCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 292 IYESMEKGECSLDGSTYELMIPSLAKS---------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 292 ~~~~m~~~g~~pd~~t~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.|++..+. .|+...+..+...+... |++++|.+.++++.+.. +.+...|..+..+|...
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~--------- 226 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSL--------- 226 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH---------
Confidence 66666553 24445555555555555 55555555555555443 33344444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
....| ...|++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+..
T Consensus 227 ---~~~~~---------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 227 ---YFNTG---------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp ---HHHTT---------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHhhc---------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00000 0004455555555555443210 144555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
.. +...+..+...+...|++++|++.+.++
T Consensus 289 p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 PA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 3445555555555666666666555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-10 Score=108.68 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
.+..+|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|++.+.+...... -+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 45667777888888888888888888877776654 677777777777778888888877777766432 2455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392 (827)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 392 (827)
..+...++++.|.+.+.+..+.. +.+..++..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 77777777777777777777664 4556677777777777777777777777777654 345667777777777777777
Q ss_pred HHHHHHHHHHHc
Q 003353 393 TALRLWDEMRIA 404 (827)
Q Consensus 393 ~A~~l~~~m~~~ 404 (827)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=127.68 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKER------NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC------GHRP 373 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 373 (827)
++..+...+...|++++|.+.++++.+. +- +....++..+...|...|++++|.+.++++.+. +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4444444555555555555555544432 11 112334555555566666666666666555432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 374 -SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 374 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
...++..+...|.+.|++++|.+.++++.+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223455566666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-10 Score=121.98 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=115.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHHHHH
Q 003353 346 LVDSMGKAGRLDTSMKVYMEMQGC----GHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF-RP-----NFGLFT 414 (827)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-----d~~t~~ 414 (827)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|++.+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555666666666666666542 1011 124555666666666666666666665543210 01 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHH
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYT 484 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~ 484 (827)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666655432000 11 134555666666666666666666665541 1212 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---Cch--HhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGY---SVD--VSASDVLMVYIKDGS---VDHALRWLRFMGSSGIRTN-NFIVRQL 555 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~--~~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l 555 (827)
.+...+.+.|++++|.+.+++..+... .+. ..+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 566666666666666666666554311 111 123344445555555 55555555444 12222 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003353 556 FESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 556 l~~~~~~g~~~~A~~~~~~m~ 576 (827)
...|...|++++|...+++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555556666666666655554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-11 Score=127.13 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------C
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS------D 265 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 265 (827)
...++..+...+...|++++|..+++++.+... .+.+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788888999999999999999999887310 001556678888999999999999999999888753 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------Cc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 003353 266 -CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------EC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER--- 334 (827)
Q Consensus 266 -~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--- 334 (827)
......+|..+...|...|++++|.+.|++..+. +- +....++..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888899999999999999999988753 11 223457788888999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 335 ---N-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 335 ---g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+ .+....++..+...|...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 122345788889999999999999999998875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-10 Score=120.85 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=148.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 003353 311 MIPSLAKSGRLDAAIKLFQEMKER----NFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RP-----SAPMYV 379 (827)
Q Consensus 311 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-----~~~~~~ 379 (827)
....+...|++++|.+.++++.+. +-.+ ...++..+...|...|++++|...+.+..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776653 1111 234666777777777777777777776654210 01 134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIAGFR-PN----FGLFTMIIESHAKSGKLDIAMSIFTDMERA----GF-LPTPSTYS 449 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 449 (827)
.+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777788888888877776542110 11 236667777888888888888888877651 22 23456677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCchH--hHHHH
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAG---LRPG-LSTYTALLTLLAKRKL---VDVAAKILLEMKTMGYSVDV--SASDV 520 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~--~~~~l 520 (827)
.+...|.+.|++++|...+++..+.. -.|. ...+..+...+...|+ +++|..++++. +..+.. .+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 88888888888888888888776521 0111 2234556667777888 66666666554 344442 56678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 003353 521 LMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~ 542 (827)
...|.+.|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-08 Score=111.00 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKER----NFR--P-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR----PSAPM 377 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~ 377 (827)
..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444444555555555555444321 111 1 1223334444555555555555555554432110 01233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
+..+...+...|++++|...+++..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-08 Score=111.18 Aligned_cols=271 Identities=13% Similarity=0.047 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC----H
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID----T 270 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~ 270 (827)
+......+...|++++|...+++.+.... ..+. .+++.+...+...|++++|...+++..+.... .+ .
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34445566678888888888888877542 2222 25667777888888888888888876542111 12 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhC----Ccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CC
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECS--L-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR----PS 339 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~ 339 (827)
.+++.+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+..-. ..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 33566777888889999998888887542 211 2 2345666778888899999999999888764321 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CH
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-S-APMYV----SLIESYAKAGKLDTALRLWDEMRIAGFRP---NF 410 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~-~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~ 410 (827)
..++..+...+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++.......+ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 3567778888889999999999998876431111 1 11111 23344668888888888887766533211 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 411 GLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPTP-STYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 411 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
..+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24455666677777777777777665432 111111 1344444555556666666665555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=102.85 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD----AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34444444555555555555555544433 344445555555555555555555555554443221 3444444444
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 4444444444444444444321 1233344444444444444444444444444332 2233344444444444444444
Q ss_pred HHHHHHHH
Q 003353 359 SMKVYMEM 366 (827)
Q Consensus 359 A~~~~~~m 366 (827)
|.+.++++
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-09 Score=112.95 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=118.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNF-RP----SFNIFASLVDSMGKAGRLDTSMKVYMEMQGC----GH-RP-SAPMYVS 380 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~~ 380 (827)
...+...|++++|...++++.+..- .+ ...++..+...|...|++++|...+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777764311 01 1345666777777777777777777666531 10 11 1345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003353 381 LIESYAKAGKLDTALRLWDEMRIA----GFR-PNFGLFTMIIESHAKSGKLDIAMSIFTDMER-----AGFLPTPSTYSC 450 (827)
Q Consensus 381 li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 450 (827)
+...|...|++++|++.+++..+. +.. ....++..+...|...|++++|.+.+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 667777777777777777665542 100 0123455566666666666666666666554 2211 2445555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCchH--hHHHHH
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSAGL---RPG-LSTYTALLTLLAKRKL---VDVAAKILLEMKTMGYSVDV--SASDVL 521 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~g~---~pd-~~t~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~--~~~~li 521 (827)
+...|.+.|++++|...+++..+..- .|. ...+..+...+...++ +++|...+++ .+..++. .+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 66666666666666666666554210 111 1233333334444455 4444444433 2222221 333455
Q ss_pred HHHHHcCCHHHHHHHHHHHh
Q 003353 522 MVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 522 ~~y~~~g~~~~A~~~~~~m~ 541 (827)
..|.+.|++++|...|++..
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-09 Score=100.79 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
..+..+...+...|++++|...|+++.+..+. +..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44555666666666666666666666554332 55566666666666666666666666665532 22455555556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666655543 3445555555555666666666666665555443 234455555555555555555555
Q ss_pred HHHHHHHH
Q 003353 396 RLWDEMRI 403 (827)
Q Consensus 396 ~l~~~m~~ 403 (827)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=128.12 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+..+|+.+...+.+.|++++|++.|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+..+. +..+|+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 45677777777777788888888887777776 677777777777777777777777777777766543 5677777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+..+|.+.|++++|++.|++.++... -+..+|+.+..+|.+.|++++|.+.|+++.+.. +-+...+..+..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 77777777777777777777766422 245677777777777777777777777777664 4456677777777777777
Q ss_pred HHHHHHHHHHHH
Q 003353 356 LDTSMKVYMEMQ 367 (827)
Q Consensus 356 ~~~A~~~~~~m~ 367 (827)
+++|.+.+++..
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.9e-09 Score=112.37 Aligned_cols=228 Identities=10% Similarity=-0.050 Sum_probs=130.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHH
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGH-RPS----APMYVSLIESYAKAGKLDTALRLWDEMRIAG--F---RP-NFGLF 413 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p-d~~t~ 413 (827)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556678888888888888775311 122 3467777778888888888888887765421 0 11 13456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCCCHHHH
Q 003353 414 TMIIESHAKSGKLDIAMSIFTDMERA----GFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTS-----AGLRPGLSTY 483 (827)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 483 (827)
+.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...|++..+ .. .....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 66777777777777777777766542 1110 123556666667777777777777766665 21 1124455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC---ch--HhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCCC-HHHHHH
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYS---VD--VSASDVLMVYIKDGS---VDHALRWLRFMGSSGIRTN-NFIVRQ 554 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~--~~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ 554 (827)
..+...+.+.|++++|...+++..+.... +. ..+..+...|...|+ +++|+..+++. +..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 56666666667777777666666653221 11 123334444555555 55555555542 11222 223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 003353 555 LFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 555 ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
+...|...|++++|...|++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555556666666666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-09 Score=125.89 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.+..+|+.|...|.+.|++++|++.|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++... -+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 556677888888888888888888888887776544 677788888888888888888888887776432 246677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 391 (827)
..++.+.|++++|.+.|+++.+.+ +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 777777788888888777777765 4556777777777777777777777777777654 23556777777777777777
Q ss_pred HHHHHHHHHHHH
Q 003353 392 DTALRLWDEMRI 403 (827)
Q Consensus 392 ~~A~~l~~~m~~ 403 (827)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=101.48 Aligned_cols=196 Identities=8% Similarity=-0.013 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
.++..|......+.+.|++++|...|++.++.. + ++..++..+..++.+.|++++|+..|++..+..+. +...|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHH
Confidence 456778888888888888888888888888876 4 77777777888888888888888888888876654 66778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-------STYELMIPSLAKSGRLDAAIKLFQEMKERNFRP--SFNIFA 344 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~ 344 (827)
..+...|...|++++|++.|++..+... .+. ..|..+...+.+.|++++|.+.|+++.+.+ +. +...+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~ 157 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHH
Confidence 8888888888888888888888876422 233 457777778888888888888888888764 23 356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
.+..+|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777775544 34445555443 23444454433 234566888999988888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-08 Score=100.15 Aligned_cols=207 Identities=8% Similarity=-0.033 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.++..+..+...+.+.|++++|...|++..+..+.++...+..+..++...|++++|++.|++..+.... +..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678899999999999999999999999998776568888888999999999999999999999886422 56688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS---APMYVSL 381 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 381 (827)
..++...|++++|.+.+++..+.. +.+. .+|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4455 56888889999999999999999999876 444 5677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+.... +..+...+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 77776554 344555555432 2444454443 33456789999999999986432 34444333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=108.69 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhC------Cc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CC
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKG------EC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER------N-FR 337 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~ 337 (827)
+|..+...|...|++++|++.+++..+. +- +....++..+...+...|++++|.+.++++.+. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444321 00 112234444555555555555555555554432 0 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC------GHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
....++..+...|...|++++|...++++.+. +..| ...++..+...|.+.|++++|.+.+++..+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345555666666666666666666655542 1011 234566666666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-09 Score=109.07 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=88.8
Q ss_pred cCChhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCCHHHHHHHHH
Q 003353 174 INDSDTSLSLFRWAKRQ------SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISLFSAYNRVIQ 243 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~------~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~~~~li~ 243 (827)
.++++.|+..|+.+.+. ...+....++..+...+...|++++|...+++++.... .+.+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555442 01122345666677777777777777777777665410 011334456666666
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC-----C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------CccC-CHHHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSD-----C--KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------ECSL-DGSTYE 309 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g-----~--~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~ 309 (827)
.|...|++++|...|++..+.. . .....+|..+...|...|++++|++.|++..+. +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7777777777777766665430 0 112445566666666666666666666666542 1011 234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
.+..++.+.|++++|.+.++++.+
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-08 Score=101.74 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=106.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHH
Q 003353 385 YAKAGKLDTALRLWDEMRIA----GFRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEM 454 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~ 454 (827)
|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|...+++..+.... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444331 11111 234555555555555555555555554431000 01 2356667777
Q ss_pred HHHc-CCHhHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------hHHH
Q 003353 455 HASS-GQVDSAMKLYNSMTSAGLRP---G----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-------SASD 519 (827)
Q Consensus 455 ~~~~-g~~~~A~~l~~~m~~~g~~p---d----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~ 519 (827)
|... |++++|+..|++.++. .| + ..++..+...+.+.|++++|...|+++.+..+.... .+..
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 7775 7888887777777652 11 1 245667777778888888888888888776544321 3456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTN------NFIVRQLFESCM--KNALYESAKPLLETYV 576 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~--~~g~~~~A~~~~~~m~ 576 (827)
+..+|...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|+..|+++.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 667777888888888888877643 222 112334444443 3455677777766553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-07 Score=94.02 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=95.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF-RPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
|...|++..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445566666666666666666666554442 1244555566666666666666666666665
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--HcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 438 RAGFLP-----TPSTYSCLLEMHA--SSG--QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 438 ~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
+. .| +..+...|..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 2344444444422 223 666666666666552 34433333444466666777777766665544
Q ss_pred CC----------CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 509 MG----------YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 509 ~g----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
.. +....+...+|..+...|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 21 1111244455554444555 666666666643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-07 Score=93.92 Aligned_cols=219 Identities=12% Similarity=0.129 Sum_probs=166.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH----HHc-
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR--DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL----AKA- 248 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~----~~~- 248 (827)
..++|+++++.+...+ +-+..+|+....++...+ ++++++++++.++... |.+..+|+.-...+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 4467999999988876 456778888888888888 9999999999999887 88888888877777 666
Q ss_pred --CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC----
Q 003353 249 --DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY--KAFEIYESMEKGECSLDGSTYELMIPSLAKSGR---- 320 (827)
Q Consensus 249 --g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~---- 320 (827)
+++++++.+++.+.+..++ |..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 7888999999999887765 8889988888888888888 888888888876543 77777766666666665
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 321 --LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT-SMKVYMEMQGCG--HRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 321 --~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
++++++.+++++..+ +-|...|+-+...+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 778888888887776 5677788777777777776433 444555544322 1235667777777777777777777
Q ss_pred HHHHHHHH
Q 003353 396 RLWDEMRI 403 (827)
Q Consensus 396 ~l~~~m~~ 403 (827)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-07 Score=93.04 Aligned_cols=223 Identities=8% Similarity=0.028 Sum_probs=155.0
Q ss_pred HhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH----
Q 003353 208 NESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF---- 280 (827)
Q Consensus 208 ~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~---- 280 (827)
.+.|. .++|+++++.++..+ |.+..+|+.-...+...| +++++++.++.+....++ +..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 34444 478999999999998 899999999999999999 999999999999987765 778888766666
Q ss_pred HHc---CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 281 LNK---GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD--AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 281 ~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
... +++++++++++++.+... -|..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 555 678888888888877543 36777777777777777777 8888888888776 4566777776666666665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCh
Q 003353 356 ------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT-ALRLWDEMRIAG--FRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 356 ------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~pd~~t~~~li~~~~~~g~~ 426 (827)
++++++.+++++... +-|...|+-+...+.+.|+..+ +.++..++.+.+ -..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 666666666666554 3466666666666666665332 333444433322 112455555566666666666
Q ss_pred hHHHHHHHHHHH
Q 003353 427 DIAMSIFTDMER 438 (827)
Q Consensus 427 ~~A~~~~~~m~~ 438 (827)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-08 Score=102.48 Aligned_cols=207 Identities=12% Similarity=-0.024 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHhHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPT-PSTYSCLLEMHASSGQVDSA 464 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A 464 (827)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577899999999999987653 21111 46889999999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc------hHhHHHHHHHHHHcCCHHH
Q 003353 465 MKLYNSMTSA----GLRP-GLSTYTALLTLLAKR-KLVDVAAKILLEMKTMGYSV------DVSASDVLMVYIKDGSVDH 532 (827)
Q Consensus 465 ~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~------~~~~~~li~~y~~~g~~~~ 532 (827)
+..|++.++. |-.. -..++..+...|... |++++|+..+++.++..... ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988762 1111 134788888899996 99999999999998753221 1257788899999999999
Q ss_pred HHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCCH
Q 003353 533 ALRWLRFMGSSGIRTNN------FIVRQLFESCMKNALYESAKPLLETYVESAAKV-D---LVLYTSVLAHLV--RCQDE 600 (827)
Q Consensus 533 A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-d---~~t~~~ll~a~~--~~g~~ 600 (827)
|+..|++..+....... ..+..+..++...|++++|+..|++.++..+.. + ...+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999976543221 156667778889999999999999988754331 1 123455566664 34556
Q ss_pred HHHHHHHHHHh
Q 003353 601 QNERHLMAILS 611 (827)
Q Consensus 601 ~~a~~l~~~l~ 611 (827)
++|...++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=85.18 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...|+++.+.++. +...|..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 78 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 4444455555555555555555555443 344445555555555555555555555554443321 34444444444
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444444444321 1123344444444444444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=93.98 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHhH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR----------------VIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~ 262 (827)
.+......+.+.|++++|...|++.++.. |.+..+|.. +..+|.+.|++++|+..|++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455556666666666666666554 444444443 4444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..+. +...|..+...|...|++++|++.|++.++
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43322 344444444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-07 Score=84.20 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33333333333444444444444433332 2223333334444444444444444444433322 122333333444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 003353 387 KAGKLDTALRLWDEMR 402 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~ 402 (827)
+.|++++|.+.++++.
T Consensus 115 ~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHH
Confidence 4444444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-06 Score=89.67 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=144.9
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
..-.|.+..++.-...+. ..-....--.+.++|...|++... ..-.|....+..+.. |...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 344566666666333222 121222333445667777766531 112233333333333 22222 5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
...+++..+.+ .++..+...+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554 45555666777778888888888888887766542 13556777777888888888888888888876
Q ss_pred cCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 404 AGFRP-----NFGLFTMIIESHA--KSG--KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 404 ~g~~p-----d~~t~~~li~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 34 2455555555532 234 788888888887654 244333344444777888888888888766542
Q ss_pred -----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 475 -----GL---RP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 475 -----g~---~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
.. .| |..++..+|......|+ +|.+++.++.+..+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 00 13 44566555555555666 7788888888765443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-08 Score=116.62 Aligned_cols=174 Identities=9% Similarity=-0.069 Sum_probs=130.0
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 208 NESRDFDGMLSLFDEMV--------HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
...|++++|++.+++.+ +.. +.+..++..+...|.+.|++++|++.|++..+..+. +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF----SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHH
Confidence 67788888888888887 444 667778888888888888888888888888876544 77788888888
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 359 (827)
|...|++++|++.|++..+... -+...|..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..+|.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876532 256677788888888888888 88888888775 55677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 390 (827)
.+.|++..+.+ +.+...|..+..++...++
T Consensus 554 ~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 88888877653 2234566666666655444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-08 Score=116.78 Aligned_cols=174 Identities=12% Similarity=-0.008 Sum_probs=149.2
Q ss_pred HccCChhHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 172 KVINDSDTSLSLFRWAK--------RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 172 ~~~~~~~~Al~~f~~~~--------~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
...+++++|++.|+.+. ... +.+...+..+...+.+.|++++|++.|+++++.. +.+..+|..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----cchHHHHHHHHH
Confidence 46789999999999998 543 5567889999999999999999999999999987 889999999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 323 (827)
+|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++ ++.|++..+... -+...|..+..++.+.|++++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987654 77899999999999999999 999999987542 367789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 553 A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999999998765 3446778788888766555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-07 Score=95.30 Aligned_cols=187 Identities=7% Similarity=0.014 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-C-
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-I- 268 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p- 268 (827)
+.+...+..+...+.+.|++++|...|+++++.. |.+ ..++..+..+|.+.|++++|+..|++..+..+. |
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4456667777777777777777777777777765 444 667777777777777777777777777765332 1
Q ss_pred CHHHHHHHHHHHHH--------cCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 269 DTQSYNVLMTLFLN--------KGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339 (827)
Q Consensus 269 ~~~~~n~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 339 (827)
...++..+..++.. .|++++|+..|++.++.. |+. .....+... ..+... -
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~--------------~~~~~~----~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI--------------RELRAK----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH--------------HHHHHH----H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH--------------HHHHHH----H
Confidence 23456666666666 677777777777766542 221 111111000 000000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHc
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP--SAPMYVSLIESYAKA----------GKLDTALRLWDEMRIA 404 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 404 (827)
...+..+...|.+.|++++|...|+++.+..... ....+..+..+|.+. |++++|...|+++.+.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 0113445566666666666666666666532111 123455555555544 6666666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=95.97 Aligned_cols=181 Identities=7% Similarity=0.006 Sum_probs=129.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPG---DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~---~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
.+..+...+++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|...|++.++... +.+....++..+..
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHHHHHHHHH
Confidence 4666778899999999999999976 334 67899999999999999999999999998751 11344668888999
Q ss_pred HHHH--------cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 244 YLAK--------ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 244 ~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
++.+ .|++++|...|+++.+..+. +...+..+... ...... -...+..+...|
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHHHHHHH
Confidence 9999 99999999999999886543 32333222111 111000 011245566677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRP--SFNIFASLVDSMGKA----------GRLDTSMKVYMEMQGC 369 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 369 (827)
.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 77888888888888877653211 234666677777655 7778888888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=93.18 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=129.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVM----------------LFDVLNESRDFDGMLSLFDEMVHDSSKNG 231 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~----------------li~~l~~~g~~~~A~~l~~~m~~~~~~~~ 231 (827)
+..+...|++++|+..|+.+.+.. +.+...|.. +..++.+.|++++|...|++.++..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 455667899999999999998864 345567777 8999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|.+..++..+..+|...|++++|...|++..+..+. +..+|..+...|...|. .+.+...++.... ..|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 889999999999999999999999999999987765 78899999988876654 3445666665543 223333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 346 (827)
....++...|++++|...|+++.+. .|+......+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4555667778889999999888874 4665444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-05 Score=88.11 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIK-DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (827)
.|...+..+.+.+..+.|..+|+.+ +. .... ..|......-.. .++.+.|..+|+...+.-. -+...+...++-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3444444444455566666666666 21 1111 122111111111 2246666666666654321 1223333444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.+.|+.+.|..+|+++. .....|...++-=...|+.+.++.++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666651 14556666665555566666666655543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-07 Score=89.03 Aligned_cols=161 Identities=10% Similarity=0.068 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+..+...+.+.|++++|...|++.++.. |.+..++..+...|.+.|++++|+..|++..+..+ +...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL----QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 4455566667777777777777776665 66677777777777777777777777777665433 33333222111
Q ss_pred -HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003353 280 -FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 280 -~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 357 (827)
+...+...+|++.+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 112222334555565555432 1135555566666666666666666666665544221 2345555666666666666
Q ss_pred HHHHHHHHHH
Q 003353 358 TSMKVYMEMQ 367 (827)
Q Consensus 358 ~A~~~~~~m~ 367 (827)
+|...|++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=95.15 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..+...+.+.|++++|...|++.++.. |.+..++..+...|.+.|++++|...++++.... |+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHH
Confidence 3456677888888999999999999999999887 8889999999999999999999999999987764 344333
Q ss_pred H-HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 003353 274 N-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PSFNIFASLVDSMG 351 (827)
Q Consensus 274 n-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~ 351 (827)
. .....+.+.+..++|++.+++..+.. +.+...+..+...+...|++++|.+.+.++.+.... .+...+..++..+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 2 23334667778888888888887753 236778888888999999999999999998886522 12567888888888
Q ss_pred hcCCHHHHHHHHHHHH
Q 003353 352 KAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~ 367 (827)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8898888888887755
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=90.47 Aligned_cols=119 Identities=7% Similarity=0.023 Sum_probs=59.4
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++.++|+..++.+...+ +.+...+..+...|.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCchH
Confidence 3344555555555544432 1222334445555555555555555555555554 555555555555555555555
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHhHh
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-YESMEK 298 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~-~~~m~~ 298 (827)
+|+..|++..+..+. +..+|..+...|.+.|++++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555544332 445555555555555555443333 244443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-07 Score=105.97 Aligned_cols=153 Identities=12% Similarity=-0.039 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (827)
++.++|++.|+.+.+.. +.+...|..+...+.+.|++++|.+.+++.++.. +.+..++..+...|.+.|++++|
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666543 3455666666666667777777777777766665 55666666677777777777777
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 003353 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS---GRLDAAIKLFQEM 331 (827)
Q Consensus 255 ~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~---g~~~~A~~~~~~m 331 (827)
.+.|++..+..+. +...|..+..+|.+.|++++|.+.|++..+... .+...+..+..++... |+.++|.+.++++
T Consensus 77 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777666655433 556666666666666666666666666655421 2455666666666666 6666666666666
Q ss_pred HHcC
Q 003353 332 KERN 335 (827)
Q Consensus 332 ~~~g 335 (827)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-06 Score=86.35 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=76.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc-C-C
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA-D-K 250 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 250 (827)
....++|+++++.+...+ +-+..+|+..-..+...| .+++++++++.++... +.+..+|+.....+.+. + +
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhcCCC
Confidence 344455666666666654 345556666666665555 3666666666666665 66666666666666655 5 5
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY--------KAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
+++++++++++.+..++ |..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 66666666666655543 6666665555554444444 444444444443222 4444444444443333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=90.11 Aligned_cols=146 Identities=11% Similarity=0.020 Sum_probs=119.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445566788999999999987665 566677888999999999999999999999987765 88999999999999
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL-FQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
.|++++|+..|++..+... -+..+|..+...|.+.|++++|.+. ++++.+.. +-+..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999988532 2578899999999999999876665 58888875 5677888888888877775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-07 Score=105.90 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=99.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.|++++|.+.+++.++.. +.+..++..+...|.+.|++++|.+.|++..+..+. +...|..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 367778888888877765 667778888888888888888888888887776543 677777777778788888888
Q ss_pred HHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 003353 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---GRLDTSMKVYMEM 366 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m 366 (827)
.+.|++..+.. +.+...+..+..++.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88887776643 2246677777777777777777777777777664 44566777777777777 7777777777777
Q ss_pred HhCC
Q 003353 367 QGCG 370 (827)
Q Consensus 367 ~~~g 370 (827)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=89.48 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH-H
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS-L 315 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~-~ 315 (827)
.+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778888888888888887765443 67778888888888888888888888876542 344333222211 1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 394 (827)
.+.+...+|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334566666666654 3456666667777777777777777777766654222 244566666666666776666
Q ss_pred HHHHHHHH
Q 003353 395 LRLWDEMR 402 (827)
Q Consensus 395 ~~l~~~m~ 402 (827)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-06 Score=86.78 Aligned_cols=207 Identities=6% Similarity=-0.077 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 003353 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN--FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP--STYS 449 (827)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 449 (827)
+...+..+...+.+.|++++|+..|+++.+...... ...+..+..+|.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666777888888888888888877543211 346666777888888888888888888765433111 1333
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
.+..++...|.. .+ ..|..+...+...|++++|...|+++++..+............. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----~ 141 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----F 141 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----H
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----H
Confidence 444444432210 00 01112222333456677777777777765544332221111000 0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD--LVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|...+
T Consensus 142 ------~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 142 ------LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ------HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 000000 0001233445566666666666666665543321 234555666666666666666666
Q ss_pred HHHhhccC
Q 003353 608 AILSATKH 615 (827)
Q Consensus 608 ~~l~~~~~ 615 (827)
+.+....+
T Consensus 208 ~~l~~~~~ 215 (225)
T 2yhc_A 208 KIIAANSS 215 (225)
T ss_dssp HHHHHCCS
T ss_pred HHHHhhCC
Confidence 66555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-07 Score=93.49 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=131.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|.+.+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 556677888888999999999999999999887654 7888999999999999999999999988764 3555433332
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 003353 312 I-PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYVSLIESYAKAG 389 (827)
Q Consensus 312 i-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 389 (827)
. ..+.+.++.++|.+.+++..+.. +.+...+..+...|...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 33667788888888888888876 667788888888999999999999999888875422 12567888888888888
Q ss_pred CHHHHHHHHHHHH
Q 003353 390 KLDTALRLWDEMR 402 (827)
Q Consensus 390 ~~~~A~~l~~~m~ 402 (827)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.6e-06 Score=86.04 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=147.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc-C-C
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK-G-L 285 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~-g-~ 285 (827)
+.+..++|++++++++..+ |.+..+|+.--..+...| .++++++.++.+....++ +..+|+.-...+.+. + +
T Consensus 66 ~~e~se~AL~lt~~~L~~n----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred hCCCCHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344467788888887776 777777877777777777 478888888887776665 777777777666665 6 7
Q ss_pred hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003353 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD--------AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-- 355 (827)
Q Consensus 286 ~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-- 355 (827)
+++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 77788888877765432 6666666555555555555 7777777777776 4567777777777776665
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----
Q 003353 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL--------------------DTALRLWDEMRIAG----- 405 (827)
Q Consensus 356 -----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~l~~~m~~~g----- 405 (827)
++++++.++++.... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 577777777777654 34667777666666665543 33333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 406 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
-.++...+..+++.|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 134677777788888888888888888888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-06 Score=84.95 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG----KLDIAMSIFT 434 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g----~~~~A~~~~~ 434 (827)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555432 44455555555555555555555555555443 33444444444444 3 4555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHH
Q 003353 435 DMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTS 473 (827)
Q Consensus 435 ~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~ 473 (827)
+..+.| +...+..|...|.. .+++++|++.|++..+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 544432 33444444444443 4444444444444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-05 Score=84.97 Aligned_cols=359 Identities=9% Similarity=0.025 Sum_probs=212.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH----HcC
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA----KAD 249 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~----~~g 249 (827)
++.+.|..+|+.+... .|+...|...+.-..+.+. .+....+|+..+..-. ..+.+..+|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhH
Confidence 6788899999988884 4788898888877777663 3567778888776421 11556788888877654 346
Q ss_pred CHHHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
+.+.+..+|++....... +. ..|...... .+......+..+ +.... +.+..|..++
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~f-E~~~~~~~~~~~-------------------~~~~~--~~y~~ar~~y 160 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENF-ELELNKITGKKI-------------------VGDTL--PIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHH-HHHHCHHHHHHH-------------------HHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHH-HHHhccccHHHH-------------------HHHHh--HHHHHHHHHH
Confidence 788899999998874221 22 222222111 111111112222 21111 1233344444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAG--R-----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.+...--..+...|...++.-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332100013345555554432211 0 234566777777643 345667777777777778888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------C---CCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG---------F---LPTPSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~---~p~~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
... +.+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|+
T Consensus 240 i~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776 22222222 23322222222 22222110 0 0123457777777777888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 470 SMTSAGLRPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 470 ~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
+. +. ...+...|......-.. .++.+.|..+|+..++..+.....+...++...+.|+.+.|..+|+++. ..
T Consensus 311 ~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~ 383 (493)
T 2uy1_A 311 EL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KT 383 (493)
T ss_dssp HH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CB
T ss_pred Hh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH
Confidence 99 32 12344455433322222 3469999999999998654433345567777888999999999999984 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 549 NFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 549 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
...|...+.--...|+.+.+..+++++.+
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777666678999999999998874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-07 Score=93.95 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFR-PN----FGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLP-TPSTYSCLLE 453 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~ 453 (827)
.|...|++++|.+.|.+..+.... .+ ..+|+.+...|.+.|++++|...|++..+. |-.. ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666554432100 01 234455555566666666666666654431 1000 1234444555
Q ss_pred HHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 454 MHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
.|.. |++++|+..|++.++. +-.. ...++..+...+.+.|++++|.+.++++++
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555 5555555555555431 0000 022344444445555555555555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.8e-06 Score=83.20 Aligned_cols=176 Identities=13% Similarity=0.006 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG----KLDTALRLW 398 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 398 (827)
+|.+.|++..+.| +...+..|...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 34555556666666666666666666665543 44555555555555 4 566666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHhHHHHHHH
Q 003353 399 DEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFL-PTPSTYSCLLEMHAS----SGQVDSAMKLYN 469 (827)
Q Consensus 399 ~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~l~~ 469 (827)
++..+.| +...+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 55666666666665554321 014455555555555 455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 003353 470 SMTSAGLRPGLSTYTALLTLLAKR-K-----LVDVAAKILLEMKTMG 510 (827)
Q Consensus 470 ~m~~~g~~pd~~t~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 510 (827)
+..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55543 12223334444444332 1 4555555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-06 Score=85.20 Aligned_cols=187 Identities=8% Similarity=-0.010 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH--HHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT--QSYN 274 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~n 274 (827)
...+..+...+.+.|++++|...|+++++... ..+....++..+..+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455556666777777777777777776541 00112356666777777777777777777777665433111 2333
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 275 VLMTLFLN------------------KGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 275 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
.+..++.. .|++++|+..|+++++.. |+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 34444433 456677777777776642 222 122111110 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS----APMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.....+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112346677888899999999999888753 33 24677888889999999999999988887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.7e-07 Score=93.87 Aligned_cols=165 Identities=10% Similarity=0.072 Sum_probs=82.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.|++++|.+++++..+.. +.. .+...+++++|...|.+. ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~----~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL----KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc----ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 455666777766665543 111 011135556555555543 3345556666666
Q ss_pred HHHHHHhHhC----CccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHH
Q 003353 290 FEIYESMEKG----ECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF---RP--SFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 290 ~~~~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~~~g~~~~A 359 (827)
.+.|.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+... .+ -..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 6666655432 1000 123555666666666666666666666543210 01 12345555555655 666666
Q ss_pred HHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 360 MKVYMEMQGCGHR---P--SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 360 ~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
+..|++..+.... + ...+++.+...|.+.|++++|++.|++..+
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666655431100 0 023445555555555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.9e-07 Score=92.48 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...+..+...+.+.|++++|...|++.++.. +.+...|..+...|.+.|++++|...+++..+..+. +...|.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 76 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 76 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 355677788888888889999999888888876 778888888888888888888888888888876554 677888
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.+..+|...|++++|++.|++..+.. |+. ..+...+....+ ..++.. +........+.+......+... ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 88888888888888888888876532 211 011111111111 111111 1122223334444444444332 25
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSA-PMYVSLIESYAKA-GKLDTALRLWDEMRI 403 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 403 (827)
|++++|.+.+++..+. .|+. .....+...+.+. +.+++|.++|.+..+
T Consensus 149 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777776654 3333 3333333334443 556777777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=79.36 Aligned_cols=124 Identities=11% Similarity=-0.047 Sum_probs=58.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...|++++|++.|++.. .|+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444444444444444432 2344444444444444444444444444444433 2334444444555555555
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 356 LDTSMKVYMEMQGCGHR--------------P-SAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
+++|...|++..+.... | +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555544442210 0 1144555555555555555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=83.83 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=93.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC----HHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID----TQSY 273 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~ 273 (827)
.+..+...|++++|..++++...... ..++ ...+..+...+...|++++|...|++..+.... ++ ..+|
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 35667777888888888888776431 0111 112334555666666777777777777653222 22 2356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhC-----CccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKG-----ECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKER----NFRPS-FNI 342 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t 342 (827)
+.+...|...|++++|++.|++..+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777777777776531 11111 225566666666666666666666665432 11111 345
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGR-LDTSMKVYMEMQ 367 (827)
Q Consensus 343 ~~~li~~~~~~g~-~~~A~~~~~~m~ 367 (827)
|..+..+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5556666666663 466666555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-05 Score=80.61 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC---C
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK---I 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p 268 (827)
..+...+..+...|++++|.+.+.+.++.. +... ..+..+...+...|++++|...|++..+.... +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc----cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 455566777788888888888888877654 2222 22344555666777788888877776643211 1
Q ss_pred C--HHHHHHHHHHHHHcCChhHHHHHHHHhHhC-CccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Q 003353 269 D--TQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLD-----GSTYELMIPSLAKSGRLDAAIKLFQEMKERN----F 336 (827)
Q Consensus 269 ~--~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~ 336 (827)
. ..+|+.+...|...|++++|++.|++..+. ...|+ ..++..+...|.+.|++++|...+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 1 346777777777777777777777776521 00111 1466667777777777777777777665431 0
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003353 337 RP-SFNIFASLVDSMGKAGRLDTS-MKVYMEMQ 367 (827)
Q Consensus 337 ~p-~~~t~~~li~~~~~~g~~~~A-~~~~~~m~ 367 (827)
.. -..+|..+..+|.+.|++++| ...+++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 01 145566666667777777766 55555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-05 Score=78.35 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHc
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~ 527 (827)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|.+.++++++..+.....+..+..+|.+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666667777766666552 456666666666666777777777777776665544445666666677777
Q ss_pred CCHHHHHHHHHHHhhCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 528 GSVDHALRWLRFMGSSGI--------------RTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 528 g~~~~A~~~~~~m~~~~~--------------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
|++++|.+.|+++.+... .|+ ...+..+..+|.+.|++++|.+.|++.++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777777665321 121 245666777777888888888888888776554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=8.3e-06 Score=76.35 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..+..+...+...|++++|...|++.+... +.+..++..+...+.+.|++++|...|++..+..+. +...|..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 356666677777777777777777777765 666777777777777777777777777777665432 566677777
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL--MIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 332 (827)
.++...|++++|.+.|++..+... .+...+.. ....+.+.|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777777777665421 13333322 2333555666666666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-05 Score=81.09 Aligned_cols=126 Identities=6% Similarity=-0.045 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGF-RPNF----GLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCL 451 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l 451 (827)
+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455556666666666666554221 1111 11223344444445555555555555542111 11 1235555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTS----A-GLRPGL-STYTALLTLLAKRKLVDVAAKILLEMK 507 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~----~-g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~ 507 (827)
...|...|++++|+..|+++.+ . +..+.. .++..+...|.+.|++++|.+.+++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555542 0 111111 134444444555555555555554444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=73.49 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..+......+.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|+..|++..+.++. +...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 355566666777777777777777776665 666667777777777777777777777766665443 566666666
Q ss_pred HHHHHcCChhHHHHHHHHhHhC
Q 003353 278 TLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.+|...|++++|++.|++.++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6666677777777777666653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=89.05 Aligned_cols=192 Identities=10% Similarity=-0.048 Sum_probs=130.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCC------C-C-------
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVML-------FDVLNESRDFDGMLSLFDEMVHDSSK------N-G------- 231 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~l-------i~~l~~~g~~~~A~~l~~~m~~~~~~------~-~------- 231 (827)
..++...|++.|..+.+.+ +-..+.|..+ ...+.+.++..++...+..-+..... + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4578889999999999976 5667889887 57777777777777777666652100 0 0
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC--HH
Q 003353 232 ---ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD--GS 306 (827)
Q Consensus 232 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~ 306 (827)
..-...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113455567777888888888888888887655 333255556667778888888888887554431 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS--FNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677778888888888888888775433243 335566667777788888888888877765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=70.55 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+..+. +..+|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 3455566666666666666666666666554 455566666666666666666666666666554322 45555556
Q ss_pred HHHHHHcCChhHHHHHHHHhHh
Q 003353 277 MTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~ 298 (827)
...+...|++++|.+.|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=81.09 Aligned_cols=199 Identities=10% Similarity=-0.029 Sum_probs=140.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhHh------------CCC---
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV-------IQYLAKADKLEMSYCCFKKVLD------------SDC--- 266 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~--- 266 (827)
+.++.++|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+..-.+ .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 6889999999999999987 8889999888 6777777777777777766554 121
Q ss_pred -C----CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 003353 267 -K----IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS-- 339 (827)
Q Consensus 267 -~----p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 339 (827)
. --...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 0 002234456677788899999999998887654 444355566667888899999999887554322 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS--APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 23677788888888899999888888875432243 3356667777888888888888888888764 444444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00021 Score=75.03 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=118.5
Q ss_pred ccCCh-hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 003353 173 VINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD----------FDGMLSLFDEMVHDSSKNGISLFSAYNRV 241 (827)
Q Consensus 173 ~~~~~-~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~~~~l 241 (827)
..+.. ++|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.++... |.+..+|+.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~----PKny~aW~hR 114 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHR 114 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence 34444 46888888888865 4556677765554444333 578888888888776 7888888888
Q ss_pred HHHHHHcCC--HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 242 IQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL-PYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 242 i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
...+.+.|+ +++++.+++.+.+..+. |..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 888888774 78888888888877665 88888887777777777 47888888888776433 677777666665554
Q ss_pred --------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 319 --------------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 319 --------------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
+.++++.+.++...... +-|..+|+-+--.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34566666666666655 55666665444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00029 Score=73.91 Aligned_cols=172 Identities=8% Similarity=0.043 Sum_probs=126.4
Q ss_pred HHhcCChh-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 207 LNESRDFD-GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK----------LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 207 l~~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
..+.|.++ +|+++++.++..+ |.+..+|+.--..+...+. +++++.+++.+....++ +..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34566664 8999999999987 8889999887777766554 67888899988887765 8889988
Q ss_pred HHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 276 LMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-LDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 276 li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-...+.+.+. +++++++++++.+.... |...|+.-.-.+...|. ++++.+.++++++.+ +-|...|+.....+.+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 8888877774 78899999988876433 77788777777777787 588888888888876 5677888877766665
Q ss_pred c--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 353 A--------------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 353 ~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
. +.++++++.+.+..... +-|..+|+-+-..+.
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5 34566666666666544 335556654433333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7.2e-06 Score=76.24 Aligned_cols=99 Identities=8% Similarity=-0.066 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...+..+...+.+.|++++|...|++++... |.+...|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 34456666666677777777777777777665 666777777777777777777777777777665543 5566666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+|.+.|++++|++.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.7e-06 Score=80.24 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=89.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY-LAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 251 (827)
..+++++|+..++.+.... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhcCCc
Confidence 3466777787887777654 4567788888888888888888888888888776 6677778778777 7778887
Q ss_pred --HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 252 --EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 252 --~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
++|...|++..+..+. +...|..+...|...|++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888887776543 5677777888888888888888888887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=8e-06 Score=73.31 Aligned_cols=99 Identities=7% Similarity=-0.016 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
...+..+...|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.|++.++... .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 345555666666666666666666666655433 556666666666666666666666666655321 244556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 003353 315 LAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g 335 (827)
+...|++++|.+.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 666666666666666665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-05 Score=73.83 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.+..+...+...|++++|...|++..+..+. +..+|..+...+...|++++|++.+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4444555555555555555555555543322 44555555555555555555555555554432 123444444444555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 003353 317 KSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~ 334 (827)
..|++++|.+.++++.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.7e-06 Score=80.50 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=67.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCC-CCHHHHHHHHHHHHHc
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCK-IDTQSYNVLMTLFLNK 283 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~n~li~~~~~~ 283 (827)
..|++++|.+.++.+.... .....++..+...|...|++++|...+++..+. +.. ....+++.+...|...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP----ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ---CHHHHHHHHHHHHTST----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3455555555333332211 233445555555555555555555555554431 100 1233445555555555
Q ss_pred CChhHHHHHHHHhHhC----CccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh
Q 003353 284 GLPYKAFEIYESMEKG----ECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKER----NFR-PSFNIFASLVDSMGK 352 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~----g~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~ 352 (827)
|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5555555555554331 1000 1223444455555555555555555554321 100 001123444445555
Q ss_pred cCCHHHHHHHHHHHH
Q 003353 353 AGRLDTSMKVYMEMQ 367 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~ 367 (827)
.|++++|.+.+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 555555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-05 Score=69.53 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
..++..+...+.+.|++++|.+.|+++.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555555555556666666666655554332 244555555555555555555555555554432 1234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 003353 315 LAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~ 334 (827)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=92.72 Aligned_cols=87 Identities=13% Similarity=-0.078 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 350 (827)
.+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+..++..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555544432 1134444444455555555555555555554443 33344444444555
Q ss_pred HhcCCHHHH
Q 003353 351 GKAGRLDTS 359 (827)
Q Consensus 351 ~~~g~~~~A 359 (827)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.5e-05 Score=77.76 Aligned_cols=161 Identities=7% Similarity=-0.091 Sum_probs=81.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC---CCC--HHHHHH
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPT-----PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL---RPG--LSTYTA 485 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ 485 (827)
.+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34455555566666555555544321110 01122334445555666666666666654211 111 235556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH---CCCCch----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCC-HHHHH
Q 003353 486 LLTLLAKRKLVDVAAKILLEMKT---MGYSVD----VSASDVLMVYIKDGSVDHALRWLRFMGSSG----IRTN-NFIVR 553 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~---~g~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p~-~~~~~ 553 (827)
+...|...|++++|...++++.+ ...... .++..+...|.+.|++++|+..+++..+.. .... ..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666666666666666552 111111 244556666666666666666666554321 1111 34555
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHH
Q 003353 554 QLFESCMKNALYESA-KPLLETYV 576 (827)
Q Consensus 554 ~ll~~~~~~g~~~~A-~~~~~~m~ 576 (827)
.+...|.+.|++++| ...+++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 555666666666666 55555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=70.94 Aligned_cols=118 Identities=7% Similarity=-0.035 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+..+. +...|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHH
Confidence 3455555566666666666666666665554 445556666666666666666666666665554322 45555555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~ 320 (827)
...+...|++++|.+.|++..+... .+...+..+..++.+.|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5555555566666555555554321 134444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=72.12 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+..+. +...|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 34556666666666666666666666666554 555666666666666666666666666666554332 4555556
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..++.+.|++++|.+.|++..+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.26 E-value=8e-06 Score=79.47 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=119.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHHHcCC
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS--KNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~~~li~~~~~~g~ 250 (827)
..|++++|.+.++.+...+ .....++..+...+...|++++|...+++.+.... .+.+....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578889999666665532 24567889999999999999999999999887321 0113456688999999999999
Q ss_pred HHHHHHHHHHhHhC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----Ccc-CCHHHHHHHHHHHHHcC
Q 003353 251 LEMSYCCFKKVLDS----DCKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECS-LDGSTYELMIPSLAKSG 319 (827)
Q Consensus 251 ~~~A~~~~~~m~~~----g~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~t~~~li~~~~~~g 319 (827)
+++|...+++..+. +..+ ...+++.+...+...|++++|.+.+++.... +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887653 2111 2456888899999999999999999988642 111 11334678888999999
Q ss_pred CHHHHHHHHHHHHH
Q 003353 320 RLDAAIKLFQEMKE 333 (827)
Q Consensus 320 ~~~~A~~~~~~m~~ 333 (827)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=70.96 Aligned_cols=120 Identities=10% Similarity=-0.023 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|++.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445566667777777777777777777776665432 56666666666666777777777776666542 2245566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
..++.+.|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 666666666666666666666543 233344555555544433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-06 Score=87.02 Aligned_cols=192 Identities=8% Similarity=-0.086 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455 (827)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 455 (827)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|...+++..+... .+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444444455555555555555554443221 344445555555555555555555555544322 1344555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 456 ASSGQVDSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 456 ~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
...|++++|...|++..+. .|+. ..+...+....+ ..++.. +..........+......+..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHH
Confidence 5555555555555555431 1110 000001111000 001111 1112222222222222222211 256777777
Q ss_pred HHHHHHhhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 003353 535 RWLRFMGSSGIRTNNFIV-RQLFESCMKN-ALYESAKPLLETYVES 578 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~-~~ll~~~~~~-g~~~~A~~~~~~m~~~ 578 (827)
+.+++..+. .|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 777766643 3443322 2222223333 5677788888777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.3e-06 Score=77.53 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 44456666666677777777777777776665 666667777777777777777777777776665443 5566666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..+|...|++++|++.|++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666677777777777766654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-05 Score=77.20 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=93.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCCh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL-FLNKGLP 286 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~-~~~~g~~ 286 (827)
...|++++|...+++.++.. +.+..+|..+...|...|++++|...|++..+..+. +...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCc
Confidence 45678888888888888876 778888888888888899999999988888776543 67777777777 7778887
Q ss_pred --hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 287 --YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 287 --~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
++|+..|++..+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887753 2256677778888888888888888888888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-05 Score=68.80 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33334444444444444444444444332 2233444444444444444444444444444332 123334444444444
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003353 387 KAGKLDTALRLWDEMRI 403 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~ 403 (827)
+.|++++|.+.+++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=69.30 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+..+. +...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3456667777778888888888888887776 677778888888888888888888888877776543 66777777
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++...|++++|.+.|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777788888888887777653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=83.10 Aligned_cols=150 Identities=9% Similarity=-0.020 Sum_probs=115.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---------------HHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---------------FSAYN 239 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---------------~~~~~ 239 (827)
.++++|+..|+.+.... +.+...|..+...+.+.|++++|...|++.++.. +.+ ..+|.
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL----EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh----hccccCChHHHHHHHHHHHHHHH
Confidence 33444444444333221 2245678888888999999999999999998876 444 58889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+... -+...+..+..++.+.|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654 788899999999999999999999999887532 36678888888888889
Q ss_pred CHHHH-HHHHHHHH
Q 003353 320 RLDAA-IKLFQEMK 332 (827)
Q Consensus 320 ~~~~A-~~~~~~m~ 332 (827)
+.++| ...+..|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888 44566554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-06 Score=76.15 Aligned_cols=101 Identities=10% Similarity=-0.052 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.+..++..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+... -+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHH
Confidence 444556666666666666666666666666665443 566666666666666666666666666655421 134556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+|.+.|++++|...|+++.+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=83.49 Aligned_cols=96 Identities=13% Similarity=-0.027 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----------------SAYNRVIQYLAKADKLEMSYCCFKKV 261 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m 261 (827)
..+..+...+.+.|++++|...|++.+... +.+. .++..+..+|.+.|++++|+..+++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF----IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 355566666667777777777777776653 2221 44444455555555555555555544
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 262 ~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 115 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 115 LKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 443321 344444444444444445445444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-06 Score=81.39 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-C---C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-L---D-----------GSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---d-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
..+..+...+...|++++|++.|++..+.... | . ...|..+..++.+.|++++|...++++.+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555555556666666666555542111 0 0 1344455555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554432 223444444444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.9e-05 Score=65.03 Aligned_cols=98 Identities=14% Similarity=-0.031 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...+++..+..+. +...|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 3456666666677777777777777776665 556666667777777777777777777766655432 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++...|++++|.+.+++..+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666666666676666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.9e-06 Score=75.34 Aligned_cols=101 Identities=13% Similarity=-0.033 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|++.|++...... .+...+..+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHH
Confidence 444555555666666666666666666666554433 555666666666666666666666666555321 134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|.+.|++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=73.45 Aligned_cols=97 Identities=10% Similarity=-0.111 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+.+.|++++|...|++.+... |.+...|..+..+|.+.|++++|+..|++..+..+. +...|..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHH
Confidence 3455556666677777777777777777665 666777777777777777777777777777665543 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHhHh
Q 003353 277 MTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~ 298 (827)
..+|...|++++|++.|++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-05 Score=68.18 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CC----HH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--ID----TQ 271 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~ 271 (827)
.++..+...+.+.|++++|+..|++.++.. |.+..+|+.+..+|.+.|++++|++.|++..+..+. ++ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355566677777777777777777777665 666777777777777777777777777766543211 11 13
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+|..+..++...|++++|++.|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-05 Score=72.69 Aligned_cols=101 Identities=15% Similarity=-0.010 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..|++...... .+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 445566667777777788888888888777766543 677777777777777888888888877776532 245566777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|.+.|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=7.5e-05 Score=67.32 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...|..+...+...|++++|...|++.+... +.+..+|..+..+|.+.|++++|...|++..+..+. +...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 456667777777777777777777777777665 666677777777777777777777777777665543 566667
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHh
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+|...|++++|++.|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-05 Score=67.62 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CC----HH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--ID----TQ 271 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~ 271 (827)
..|..+...+...|++++|...|++..... +.+..++..+...|...|++++|...+++..+..+. ++ ..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 455666666667777777777777766655 556666666666777777777777766666543221 11 45
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+|..+...+...|++++|.+.|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666666666666666655
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=62.64 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.+..+...+...|++++|...|++..+..+. +...|..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555443322 44444444455555555555555555444431 113344444444444
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 003353 317 KSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~ 334 (827)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.5e-05 Score=69.70 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 45577777888888888888888888888876 777888888888888888888888888888776644 6778888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+|...|++++|++.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888887664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00014 Score=64.60 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 387 (827)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444433 2334444444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003353 388 AGKLDTALRLWDEMRI 403 (827)
Q Consensus 388 ~g~~~~A~~l~~~m~~ 403 (827)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=5.8e-05 Score=67.00 Aligned_cols=93 Identities=11% Similarity=-0.026 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..+...+.+.|++++|...|++.++.. |.+..+|..+..++.+.|++++|+..|++..+..+. +...|..+..+|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334455555666666666666666554 555566666666666666666666666665554433 455555566666
Q ss_pred HHcCChhHHHHHHHHhHh
Q 003353 281 LNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~ 298 (827)
...|++++|++.|++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.5e-05 Score=64.15 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDTQSYN 274 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~n 274 (827)
+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+..+. .+...|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 34456666667777777777777777777665 566667777777777777777777777777664321 1466667
Q ss_pred HHHHHHHHc-CChhHHHHHHHHhHhC
Q 003353 275 VLMTLFLNK-GLPYKAFEIYESMEKG 299 (827)
Q Consensus 275 ~li~~~~~~-g~~~~A~~~~~~m~~~ 299 (827)
.+...+... |++++|.+.+++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777777 7777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.2e-05 Score=67.48 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
++..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555544 2232 33444444455555555555555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=8.4e-05 Score=65.96 Aligned_cols=96 Identities=6% Similarity=-0.054 Sum_probs=86.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 164 ~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
....+..+...|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|+..|++.++.. |.+..++..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 4455677788999999999999999975 5688999999999999999999999999999987 888999999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC
Q 003353 244 YLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g 265 (827)
+|.+.|++++|+..|++..+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00046 Score=78.84 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD----------FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.++|++.++.+...+ +-+..+|+..-.++...|+ ++++++.++.+++.. +.+..+|+.-...+.
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~----pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 456888888888875 4566788877777776666 888999999988887 888888988888888
Q ss_pred HcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc-----
Q 003353 247 KAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS----- 318 (827)
Q Consensus 247 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~----- 318 (827)
+.| +++++++.++++.+..+. |..+|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 888 678899999988887765 8888888888888888 788888888888876543 777787777666653
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 319 ---------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 319 ---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+.++++.+.++++.... +-|...|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455555555555543 3444555555444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00017 Score=64.98 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|++..+... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 455666777777777777777777777776665443 566677777777777777777777777665432 245566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66677777777777776666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00022 Score=64.83 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
.+...+..+...+.+.|++++|...|++.++.. +.+ ..++..+...|.+.|++++|...+++..+..+. +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 345556666666666666666666666666543 332 455555666666666666666666665554322 455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.|..+..+|...|++++|.+.|++..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555566666666666666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=67.65 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.|++.++... -+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 334556777777777777777777777777765543 667777777777777777777777777766432 246667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
..++.+.|++++|.+.|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777777776653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00046 Score=62.66 Aligned_cols=101 Identities=17% Similarity=0.016 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 307 (827)
+.+...+..+...+.+.|++++|...|++..+.. |+ ...|..+...|...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4456667777777777777777777777776643 33 4566666666777777777777776666542 124556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
+..+..++...|++++|.+.+++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666666677777776666666553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=82.21 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=84.3
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...+++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|++.+++.++.. +.+..++..+..+|.+.|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 345678888888888887764 4567788888888888888888888888888776 7778888888888888888
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTL--FLNKGLPYKAFEIYE 294 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~--~~~~g~~~~A~~~~~ 294 (827)
+++|.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888887765443 34455555544 777788888888877
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00055 Score=75.27 Aligned_cols=163 Identities=6% Similarity=-0.032 Sum_probs=79.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGIS-------------LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID 269 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 269 (827)
...+.+.|++++|++.|.++++........ ...++..++..|.+.|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 355677788888888888887754210000 0124556677777777777777776665431101 11
Q ss_pred H----HHHHHHHHHHHHcCChhHHHHHHHHhHh----CCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--
Q 003353 270 T----QSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERN--F-- 336 (827)
Q Consensus 270 ~----~~~n~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-- 336 (827)
. .+.+.+...+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233334555666665555432 111111 2344455555555555555555555543220 0
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 337 R-PSFNIFASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 337 ~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
. ....++..++..|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 01234444455555555555555555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00023 Score=62.88 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPS----APMYVSLI 382 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~li 382 (827)
..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333334444444444444444444332 22333444444444444444444444444433210 011 33344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003353 383 ESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~ 403 (827)
..+.+.|++++|.+.|++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00097 Score=73.22 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSF----NIFASLVDSMGKAGRLDTSMKVYMEMQG----CGHRPS-APM 377 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~ 377 (827)
+..+...|.+.|++++|.+.+..+.+.- -.++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555566666666665555544321 00111 1222233333345666666666655442 121222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIA--GF--RP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERA--GFL-P-T--PS 446 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 446 (827)
+..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..+++..... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667777776666665432 11 11 1344555666666666666666666655421 111 1 1 12
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444455555566666665555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=3.1e-05 Score=86.41 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
....+..+...|.+.|++++|...|++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~ 296 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344555555666666666666666665554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00073 Score=77.18 Aligned_cols=137 Identities=8% Similarity=0.095 Sum_probs=106.7
Q ss_pred hcCCh-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 209 ESRDF-DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK----------LEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 209 ~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
+.|++ ++|++.+++++... |.+..+|+.--.++.+.|+ ++++.+.++.+.+..++ +..+|+.-.
T Consensus 40 ~~~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 44444 78899999999988 8889999998888888887 88999999998887765 888888888
Q ss_pred HHHHHcC--ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 278 TLFLNKG--LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 278 ~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-.+.+.+ +++++++.++++.+.... |..+|+.-..++.+.| .++++.+.++++++.+ +-|...|+.....+.+
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 8888888 568888888888776433 6777777777777777 7777888777777765 4566777776666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00027 Score=60.52 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=85.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQY 244 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~~~~li~~ 244 (827)
.+.++...+++++|+..|+.+.+.. +.+...|..+...+.+.|++++|...+++.++.. +. +..++..+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAAKADA 85 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHHHHHH
Confidence 4667778899999999999998875 5678899999999999999999999999999886 66 89999999999
Q ss_pred HHHc-CCHHHHHHHHHHhHhCCCC
Q 003353 245 LAKA-DKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 245 ~~~~-g~~~~A~~~~~~m~~~g~~ 267 (827)
|.+. |++++|.+.++...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999886543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00029 Score=65.79 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDS-------SKN-------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~-------~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
...+......+.+.|++++|+..|.+.+..- .+. .+.+..+|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3466777788888888888888888887750 000 03345667777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+. +...|..+..+|...|++++|.+.|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65543 6667777777777777777777777777663
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00057 Score=60.56 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC---HHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID---TQSYNV 275 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~n~ 275 (827)
.+...+.+.|++++|...|+++.+.. +.+. .++..+..+|.+.|++++|...|++..+..+. + ..++..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34455556666666666666666544 3333 45555666666666666666666666554332 2 444555
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..++...|++++|...|++..+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=65.83 Aligned_cols=130 Identities=11% Similarity=-0.050 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----Cch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY----SVD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~~--~ 515 (827)
++..+...|...|++++|...+++..+..- .++ ..++..+...+...|++++|.+.++++.+... .+. .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444455555555555555554443100 011 12444455555556666666666655543211 111 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+..+...|...|++++|.+.+++..+. +..+. ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555556666666666666555421 11111 2234444455555566666666555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=65.95 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~--~ 515 (827)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++..+. +..+. .
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555556666666666666666665441 1001 1335556666777778888888777776643 21112 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677788888888888888887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00043 Score=77.08 Aligned_cols=143 Identities=8% Similarity=-0.029 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---------------HHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---------------FSAYN 239 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---------------~~~~~ 239 (827)
.++++|+..|+.+.... +.....|..+...+.+.|++++|...|++.++.. +.+ ..+|.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL----EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccCChHHHHHHHHHHHHHHH
Confidence 34445555554433321 2235678889999999999999999999999875 444 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++.++... -+...+..+..++.+.+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 6666666667777777666666665443 566666666666666666666666666665321 13345555555555555
Q ss_pred CHHHHH
Q 003353 320 RLDAAI 325 (827)
Q Consensus 320 ~~~~A~ 325 (827)
+.+++.
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00098 Score=59.01 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=81.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGD---ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAY 238 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~---~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~ 238 (827)
...+..+...+++++|+..|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++++.. +.+ ..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHH
Confidence 345667778899999999999998864 2233 588889999999999999999999999876 555 7789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
..+..+|.+.|++++|...|+++.+..+
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=82.51 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=52.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
..+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..+|..+..+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33445666666666666666654 555666666666666666666666666666655432 4555555555555566
Q ss_pred ChhHHHHHHHHhHh
Q 003353 285 LPYKAFEIYESMEK 298 (827)
Q Consensus 285 ~~~~A~~~~~~m~~ 298 (827)
++++|++.|++..+
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00041 Score=74.83 Aligned_cols=100 Identities=8% Similarity=-0.020 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK------------NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
..|..+...+.+.|++++|++.|++.++.... ..+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888889999999999999988862100 002334445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 266 ~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+. +...|..+..+|...|++++|++.|++..+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 444455555555555555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=64.33 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=60.9
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 174 INDSDTSLSLFRWAKRQSWY-VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~-~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
.|++++|+..|+.+.+...- +.+..+|..+..++.+.|++++|+..|++.++.. |.+..++..+..+|.+.|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCCHH
Confidence 46677778888877775200 2334567777777788888888888888887776 667777777888888888888
Q ss_pred HHHHHHHHhHhCC
Q 003353 253 MSYCCFKKVLDSD 265 (827)
Q Consensus 253 ~A~~~~~~m~~~g 265 (827)
+|...|++..+..
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888887776543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00048 Score=63.58 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHhHhC-
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-------LFS-----AYNRVIQYLAKADKLEMSYCCFKKVLDS- 264 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-------~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~- 264 (827)
..+......+.+.|++++|+..|++.++.. |. +.. +|+.+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~----p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS----HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 345566677778888888888888888765 32 222 6777777777777777777777766654
Q ss_pred ------CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHhH
Q 003353 265 ------DCKIDTQSY----NVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 265 ------g~~p~~~~~----n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
.+. +...| .....++...|++++|++.|++.+
T Consensus 88 n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 88 NRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 322 34455 555566666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00064 Score=62.73 Aligned_cols=92 Identities=11% Similarity=-0.079 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-------------LSTYTALLTLLAKRKLVDVAAKILLEMKTM----- 509 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----- 509 (827)
+......+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 33444555566666666666666655 2333 125555556666666666666666666554
Q ss_pred --CCCchHhH----HHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 510 --GYSVDVSA----SDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 510 --g~~~~~~~----~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
.+.....| +....++...|++++|+..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 33222344 555555555555555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=64.39 Aligned_cols=89 Identities=7% Similarity=0.002 Sum_probs=62.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
..|++++|+..|++.++.+. +.+.+..++..+...|.+.|++++|+..|++..+..+. +...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 35777888888888877630 01555677778888888888888888888888776654 67777777888888888888
Q ss_pred HHHHHHHhHhC
Q 003353 289 AFEIYESMEKG 299 (827)
Q Consensus 289 A~~~~~~m~~~ 299 (827)
|++.|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00075 Score=72.77 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
..+..+...+.+.|++++|+..|++..+.- ++. ...... ++.... -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 456677888899999999999998877510 000 000000 111110 011334555566666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++.+.++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666544 3445566666666666666666666666665543 224455555555555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=62.20 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC------
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID------ 269 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 269 (827)
+...|..+...+.+.|++++|.+.|++.++.. +.+..++..+..+|.+.|++++|+..|++..+..+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHH
Confidence 45677778888888888888888888888876 777888888888888888888888888888876533 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 270 TQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 270 ~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
...+..+..++...|+.+.|++.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 455666666666666666665554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0016 Score=60.71 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIA--------GF---------RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~---------~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
.+......+.+.|++++|+..|.+..+. .. ..+...|..+..+|.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555554432 00 001233444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
... +...|..+..+|...|++++|...|++.++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 211 344444444444444444444444444444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00043 Score=73.71 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
.+..+...+.+.|++++|...|++.+..
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~ 208 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY 208 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555566666666666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00061 Score=72.50 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=53.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE------------------CYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~------------------~~~~li~~l~~~g~~~~A~~l~~~m~~~~~ 228 (827)
.+..+...+++++|+..|+.+.... |+.. +|..+..++.+.|++++|+..+++.++..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 260 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE- 260 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3555667899999999999988753 4332 44445555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 229 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
+.+..+|..+..+|...|++++|...|++..+.
T Consensus 261 ---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 261 ---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp ---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=57.49 Aligned_cols=79 Identities=11% Similarity=-0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258 (827)
Q Consensus 179 ~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (827)
.|+..|+.+.+.. +.+...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|...|
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677777777754 4567777788888888888888888888887776 667777888888888888888888888
Q ss_pred HHhHh
Q 003353 259 KKVLD 263 (827)
Q Consensus 259 ~~m~~ 263 (827)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=57.28 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~ 293 (827)
++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|.+.|
T Consensus 2 ~~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677888887776 778888888888888999999999998888876543 6778888888888888888888888
Q ss_pred HHhHh
Q 003353 294 ESMEK 298 (827)
Q Consensus 294 ~~m~~ 298 (827)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00054 Score=63.12 Aligned_cols=68 Identities=10% Similarity=-0.110 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD----------GMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~----------~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
+.+++|++.++.+.+.+ +.+...|..+..++.+.++++ +|+..|++.++.. |.+..+|..+..+
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----P~~~~A~~~LG~a 89 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----cCcHHHHHHHHHH
Confidence 34445555555555543 344555555555555555433 4444444444444 4444444444444
Q ss_pred HHHc
Q 003353 245 LAKA 248 (827)
Q Consensus 245 ~~~~ 248 (827)
|.+.
T Consensus 90 y~~l 93 (158)
T 1zu2_A 90 YTSF 93 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0026 Score=52.03 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+.+.|++++|...|++.++.. +.+..++..+...|.+.|++++|...|++..+..+. +...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 4566666677777777777777777777665 566677777777777777777777777777665433 55556555
Q ss_pred HHHHHH
Q 003353 277 MTLFLN 282 (827)
Q Consensus 277 i~~~~~ 282 (827)
..++.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0056 Score=68.20 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=73.6
Q ss_pred HHHcCCHhHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-chH--hHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSA---GLRP---G-LSTYTALLTLLAKRKLVDVAAKILLEMKTM-----GYS-VDV--SASD 519 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~---g~~p---d-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-~~~--~~~~ 519 (827)
+...|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|+.+++++++. |.. |++ +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766642 1222 2 236777777777788888887777776542 332 332 5667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGS-----SGI-RTNN-FIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
|...|..+|++++|+.++++..+ .|. .|+. .+...+..++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 121 1222 2334444455566666666666666644
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=72.96 Aligned_cols=127 Identities=7% Similarity=-0.000 Sum_probs=71.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCC-CC-HHHHHH
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSK----NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCK-ID-TQSYNV 275 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~n~ 275 (827)
+...|++++|+.++++.++.... +.+....+++.|..+|...|++++|+.++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888888777664321 1122345677777777777777777777766543 2221 22 245666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh-----CCcc-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK-----GECS-LD-GSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~-----~g~~-pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666766666666666542 1211 11 22334444455555555666655555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0074 Score=54.55 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKE 333 (827)
Q Consensus 319 g~~~~A~~~~~~m~~ 333 (827)
++.++|.+.|++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 333344444333333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=61.05 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=95.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL----------EMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
..+.+.+++|.+.++..++.. |.+..+|+.+..++.+.+++ ++|+..|++..+..+. +..+|+.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 356678999999999999998 99999999999999998875 5999999999998766 88899999
Q ss_pred HHHHHHcC-----------ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 277 MTLFLNKG-----------LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 277 i~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+|...| ++++|++.|++.++ +.|+...|...+...- +|.+++-.+...
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~------ka~el~~~~~~~ 147 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA------KAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH------hCHhccCccccc
Confidence 99998874 89999999999998 5688888888877643 344544444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.01 Score=53.57 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003353 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRI 403 (827)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 403 (827)
|...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 3333333344444444444444332 33334444444443 3444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0011 Score=56.67 Aligned_cols=61 Identities=20% Similarity=0.029 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+..+...+...|++++|.+.++++++..+.....+..+..+|.+.|++++|++.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444445555555555555555555554443334455555555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.004 Score=52.62 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
.+...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777777777766 66666777777777777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
+..+..++.+.|++++|...+++.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 46 WYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0073 Score=50.94 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
|.+..++..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667888888888888999999999999888877654 667888888888888999988888888765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.11 Score=61.73 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003353 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458 (827)
Q Consensus 379 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 458 (827)
..++..+.+.|..++|+++.++-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665543211 1123345567777776664332 2556677777777777
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
|+++.|.+.|.++.+ |..+...+...|+.+...++-+.+...|. +.....+|.+.|++++|++++.
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776643 23344444446666655555444444321 2222334555666666665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.011 Score=49.27 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
...+.+.|++++|...|++.++.. +.+.. ++..+..+|.+.|++++|...|++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445566677777777777776665 55666 666677777777777777777777666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.2 Score=52.72 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 378 (827)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 455566666555555677777777777766664 55556666666666677777777777666654 3444444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.21 Score=52.51 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHH--hc---CChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc---C-----CHHHHHHHHHH
Q 003353 194 VPGDECYVMLFDVLN--ES---RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA---D-----KLEMSYCCFKK 260 (827)
Q Consensus 194 ~p~~~~~~~li~~l~--~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~ 260 (827)
+.+..+|...+++.. .. ....+|..+|++.++.. |....+|..+..+|.-. + ........++.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 345556665554443 22 33478999999999887 77777777666665421 1 01111112222
Q ss_pred hH--hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 261 VL--DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338 (827)
Q Consensus 261 m~--~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 338 (827)
.. ..+ ..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++++...+ |
T Consensus 267 ~~a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P 341 (372)
T 3ly7_A 267 IVTLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--P 341 (372)
T ss_dssp HHTCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C
T ss_pred HHhcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 11 122 3588889888887888899999999999999865 788888888899999999999999999999864 5
Q ss_pred CHHHHH
Q 003353 339 SFNIFA 344 (827)
Q Consensus 339 ~~~t~~ 344 (827)
...||.
T Consensus 342 ~~~t~~ 347 (372)
T 3ly7_A 342 GANTLY 347 (372)
T ss_dssp SHHHHH
T ss_pred CcChHH
Confidence 556654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.2 Score=59.48 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555554322 244555556666666666666655555553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.027 Score=46.82 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~-~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
.+..+...+++++|+..|+.+.+.. +.+.. .|..+..++.+.|++++|.+.|++.++.. +.+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~----- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSTHHHHH-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHH-----
Confidence 4566778899999999999999875 45677 89999999999999999999999999987 666665522
Q ss_pred HHcCCHHHHHHHHHHhH
Q 003353 246 AKADKLEMSYCCFKKVL 262 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~ 262 (827)
+.+.++...|++..
T Consensus 75 ---~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDM 88 (99)
T ss_dssp ---HHHHHHHHHHCCTT
T ss_pred ---HHHHHHHHHHHHHh
Confidence 44556666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.11 Score=43.12 Aligned_cols=69 Identities=10% Similarity=-0.045 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 194 VPGDECYVMLFDVLNESRD---FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~---~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
+.++..+..+..++...++ .++|..++++.++.. |.++.+...+...+.+.|++++|+..|+++.+..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667777777777754443 688888888888877 78888888888888888888888888888887653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.072 Score=58.19 Aligned_cols=84 Identities=7% Similarity=-0.076 Sum_probs=54.4
Q ss_pred cCCHhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-chH--hHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTS---AGLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKT-----MGYS-VDV--SASDVLM 522 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~---~g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-~~~--~~~~li~ 522 (827)
.|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++++++ .|.. |++ +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776654 112222 24677777778888888888888777654 2332 332 5667777
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 003353 523 VYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~ 541 (827)
.|..+|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.033 Score=60.92 Aligned_cols=87 Identities=7% Similarity=0.045 Sum_probs=41.6
Q ss_pred cCChhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCC-CC-HHHHHHHHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSK----NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCK-ID-TQSYNVLMT 278 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~n~li~ 278 (827)
.|++++|+.++++.++.... +.+....+++.|..+|...|++++|+.++++..+ .|.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666665543211 1111233555566666666666666655555432 1211 11 133455555
Q ss_pred HHHHcCChhHHHHHHHHh
Q 003353 279 LFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m 296 (827)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.16 Score=55.36 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=56.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-chH--h
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSA---GLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTM-----GYS-VDV--S 516 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-~~~--~ 516 (827)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++. |.. |++ +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667788888888777753 12222 246677777777788888888777766542 322 222 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++.|...|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666777766666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.08 Score=57.84 Aligned_cols=61 Identities=15% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhC-----C-ccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKG-----E-CSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|...|++++|..+++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445555555555555555555544321 1 1111 2345555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.8 Score=46.20 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCH
Q 003353 321 LDAAIKLFQEMKERNFRPS---FNIFASLVDSMGKA-----GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA-GKL 391 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 391 (827)
...|...+++..+.+ |+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456777777777754 33 56788888888884 88888888888888765333467777778888874 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 003353 392 DTALRLWDEMRIAGFR--PNFGLFTM 415 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~--pd~~t~~~ 415 (827)
++|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887666 66544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=1.7 Score=40.27 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 322 (827)
....++|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 2566777777777777777777777776653 334444455566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
...++-+....+|- ++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66655555555542 44445555566777777766644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.77 Score=40.18 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-+- .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45566666666666542 24455555555555555555555555444321 11 1123333333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 512 (827)
+-.+-. +.......++.+...|+-++-.+++.++.. ..+|++.....+..+|.+.|+..+|.+++.++-+.|.+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 322211 333444555666667777777777766433 24566666666777777777777777777777766654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.33 Score=43.99 Aligned_cols=80 Identities=18% Similarity=0.054 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-C-CchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK---LVDVAAKILLEMKTMG-Y-SVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g-~-~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..++++..+.. + .....++.|..+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 444555555555443 45555555666666666 5557777777777654 1 1123566666677777777777777
Q ss_pred HHHHhh
Q 003353 537 LRFMGS 542 (827)
Q Consensus 537 ~~~m~~ 542 (827)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.44 Score=48.07 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCc-hHhHHHHHHHHHHc-CCH
Q 003353 461 VDSAMKLYNSMTSAGLRPG---LSTYTALLTLLAK-----RKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKD-GSV 530 (827)
Q Consensus 461 ~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~y~~~-g~~ 530 (827)
..+|...+++.++ +.|+ ...|..+...|.+ -|+.++|++.|++.++.++.- -.........++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4566667777776 5666 4467777777777 378888888888888766643 23555666666663 778
Q ss_pred HHHHHHHHHHhhCCCC--CCHHHHH
Q 003353 531 DHALRWLRFMGSSGIR--TNNFIVR 553 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~--p~~~~~~ 553 (827)
++|.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888777666 6655444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.37 Score=39.73 Aligned_cols=68 Identities=6% Similarity=-0.044 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC
Q 003353 232 ISLFSAYNRVIQYLAKADK---LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g 300 (827)
+.+...+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667777777777765544 67888888888776655 77777777788888888888888888887653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=3.6 Score=38.13 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWD 399 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~ 399 (827)
.|..|.....+.|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.6 Score=39.24 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK---NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
+...+..+...+.+.|+++.|...|+...+.... .......++..+..+|.+.|++++|...+++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4555667777788888888888888877764210 0134566777777777888888888887777776543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.45 Score=43.13 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 195 PGDECYVMLFDVLNESR---DFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g---~~~~A~~l~~~m~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
++..+...+.-++++.+ ++++++.++++..+... | .....+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~---p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 33344444444444320 1 1222333333344444444444444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.86 E-value=4.6 Score=35.40 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.+..++.+...|+-++-.+++.++... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444444444444444443221 134444444444455555555555555544444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.64 Score=39.07 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGSSG------IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
...|...+.+.|+++.|..+|+.+.+.- -.+...++..+..+|.+.|+++.|+..++++.+..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3456666667777777777776665421 1234556667777777777777777777777765444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.14 E-value=29 Score=41.03 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=87.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGFLPTP--STYSCLLEMHASSGQVDSAMKLYNSMTSAGL--R-----PGLSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~-----pd~~t~~~li~~~~ 491 (827)
...|+.+++..+++.....+-..+. ..-..+.-+....|..+++..++...+...- . +....-.++.-+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3455666666655544431101122 2233333445555555567766666554210 0 10111122222232
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHH
Q 003353 492 KRKL-VDVAAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM--KNALYE 566 (827)
Q Consensus 492 ~~g~-~~~A~~l~~~m~~~g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~ 566 (827)
..|. -+++.+.+..++...-... ....+|...|.-.|+-+....++..+.+.. +..+...+.-+++ ..|+.+
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence 2332 2345555555554322110 112233444555667666667776665432 2333333333333 567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 567 SAKPLLETYVESAAKVDLVLYT---SVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
.+..+.+.+... .. ..+-|. ++.-+|+..|+......++..+...
T Consensus 542 ~~~~li~~L~~~-~d-p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 542 LADDLITKMLAS-DE-SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGHHHHHHHHHC-SC-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CC-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 777777777653 12 222333 2334566677776666677766543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.36 E-value=2.6 Score=37.79 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCchH--hHHHHHH------HHHHcCCHHHHHHHHHHHhhCC
Q 003353 479 GLSTYTALLTLLAKRKLV------DVAAKILLEMKTMGYSVDV--SASDVLM------VYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~~~~--~~~~li~------~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
|..+|-..+....+.|+. ++..++|+++... ++|+. .|..-|. .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445666666666666666 6666777766653 33321 1111111 2234578888888888886543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003353 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585 (827)
Q Consensus 545 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 585 (827)
-.- ..+|....+--.+.|+...|.+++.+.+..+++|...
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 222 5555555444557888888888888888888775433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.09 E-value=3 Score=37.38 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=35.8
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 518 (827)
+++++|.++|+.+++.+-+- ...|.....--.+.|++..|.+++...+..+++|.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 66777777777776532222 445554455455677777777777777777666664433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.55 E-value=46 Score=39.43 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=116.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 003353 385 YAKAGKLDTALRLWDEMRIAGFRPNFGL--FTMIIESHAKSGKLDIAMSIFTDMERAGF-------LPTPSTYSCLLEMH 455 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~li~~~ 455 (827)
....|+.++++.+++.....+-..+..+ -..+.-+...+|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666677666665443211123232 23333445566766678887777664311 01122223333333
Q ss_pred HHcCC-HhHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhH--HHHHHHHHHcC
Q 003353 456 ASSGQ-VDSAMKLYNSMTSAGLRPGLST--YT--ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA--SDVLMVYIKDG 528 (827)
Q Consensus 456 ~~~g~-~~~A~~l~~~m~~~g~~pd~~t--~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~--~~li~~y~~~g 528 (827)
+-.|. -+++.+.+..+... .+..+ .. ++...+...|+-+....++..+.+.. .+... ..+..++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 33443 24667777776653 22221 12 22223446678888888888777642 23222 33344555778
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 529 SVDHALRWLRFMGSSGIRTNNF--IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
+.+.+..+.+.+.... .|... ...++.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888877532 22211 1223344567778877777788888764 222333333333355556776666666
Q ss_pred HHHHhh
Q 003353 607 MAILSA 612 (827)
Q Consensus 607 ~~~l~~ 612 (827)
++.+..
T Consensus 617 v~~L~~ 622 (963)
T 4ady_A 617 VQLLSK 622 (963)
T ss_dssp TTTGGG
T ss_pred HHHHHh
Confidence 655544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.47 E-value=35 Score=36.88 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCchH---h
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSA--GLRPG---LSTYTALLTLLAKRKLVDVAAKILLEMKT----MGYSVDV---S 516 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~~~---~ 516 (827)
..|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..++..+.. ....|+. .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667788888888888888877642 22221 23556667788888888888888887642 2233332 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45566777888888888888877753
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.13 E-value=2.6 Score=36.70 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
.+.|..++.+.|++++|.+.++.++
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.41 E-value=2.4 Score=36.88 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~ 333 (827)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.36 E-value=40 Score=36.42 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKER--NFRPS---FNIFASLVDSMGKAGRLDTSMKVYMEMQG----CGHRPS--APM 377 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~ 377 (827)
..|...+-..|++.+|.+++..+... |.... ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666677777777777666432 11111 23445555666666666666666665431 111122 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666665555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.97 E-value=3.9 Score=47.40 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhC------CccC-CHH---
Q 003353 239 NRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL-PYKAFEIYESMEKG------ECSL-DGS--- 306 (827)
Q Consensus 239 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-d~~--- 306 (827)
..++..+...|+ ++.|..+|+++.+..+.-+......+|..+.+.++ --+|.++..+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444444444555 57788888888775433222222333333322221 22355555544321 1111 111
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 307 -------t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
....=.+-|...|+++.|+++-++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122334566888999999988888764 5667889999999999999999988887764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=7.4 Score=41.47 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE-----RNFRPSFNIFA 344 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 344 (827)
...++..+...|++++|+..+..+... -+.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777778888877777777654 233666777888888888888888877776543 47777766543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.23 E-value=3.3 Score=44.19 Aligned_cols=67 Identities=6% Similarity=-0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-----CCccCCHHH
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-----GECSLDGST 307 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t 307 (827)
.++..+...|++++|...+..+....+- +...|-.+|.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555555555555555555444332 445555555555555555555555555432 255555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.46 E-value=8.3 Score=44.65 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcc
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLD 703 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~ 703 (827)
-|..|+...+|.+.++||.+.|+..+... -+...+..++.-+.+
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~ 658 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQ 658 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHh
Confidence 48999999999999999999999988654 344445556555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=82.95 E-value=0.00014 Score=77.63 Aligned_cols=231 Identities=9% Similarity=0.034 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
+..|..+..+..+.++..+|++-| ++ ..|+..|..++.+..+.|.+++-+..+.-.++.. .+...=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHH
Confidence 345666666666666665554433 11 3344555556666666666666665555444332 122333455
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
+-+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 66666665544322221 12444444455555555555555554443321 133344445555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.+.-. +| -...++..|...|.+++-+.+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555433221 225567777777777777766554443333321 11 1233566677777777777777665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003353 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467 (827)
Q Consensus 437 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 467 (827)
... -....-.|+-|.-.|++- +.++.++-
T Consensus 256 lgl-ErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred hCC-CchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 521 123566666666666654 33443333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.2 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.0 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.92 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.67 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.28 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.25 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 81.82 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.4e-20 Score=201.19 Aligned_cols=382 Identities=13% Similarity=0.099 Sum_probs=296.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
+...+.+.|++++|.+.++++++.. |.+..++..+...|.+.|++++|...|++..+..+. +..+|..+...|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhh
Confidence 3455677888888888888888776 777888888888888888888888888888776544 67788888888888
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.|++++|++.+....+... .+..............+....+........... .................+....+...
T Consensus 80 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hcccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHH
Confidence 8888888888888876532 344555555555666666666666666665554 34445555666677778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 442 (827)
+.+..... +.+...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|...+++....+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 87777654 345677778888888888999999888888776433 5677888888888999999999999888876433
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHH
Q 003353 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521 (827)
Q Consensus 443 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 521 (827)
+...+..+...+.+.|++++|...|++..+ +.|+ ..++..+...+...|++++|.+.++......+.....+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence 677788888889999999999999999887 3454 567888888899999999999999998887666666778888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003353 522 MVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599 (827)
Q Consensus 522 ~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 599 (827)
..|.+.|++++|++.|++..+.. |+ ..++..+...|.+.|++++|+..|++.++..+. +...|..+..+|.+.||
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 89999999999999999988643 44 567778888899999999999999999886554 67788888888877664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-19 Score=195.33 Aligned_cols=382 Identities=13% Similarity=0.059 Sum_probs=322.3
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+......|++++|++.|+.+.+.. +-++.++..+..++.+.|++++|...|+++++.. |.+..+|..+...|.+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhhh
Confidence 455667899999999999998875 4578899999999999999999999999999987 8889999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|...+....+.... +...+..........+....+............ ................+....+...
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHH
Confidence 99999999999999886654 566666666666677777777777666655433 3455555666677788889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
+....... +.+..++..+...+...|++++|...+++..+.. +.+..+|..+...+...|++++|+..+++....+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 88888765 5567888899999999999999999999988764 346778999999999999999999999999887543
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
+...+..+...+.+.|++++|...|++..+.... +..+|..+...|...|++++|.+.++..... .+.+...+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHH
Confidence 6778888999999999999999999999886433 6788999999999999999999999998874 344667888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNAL 564 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 564 (827)
..+.+.|++++|.+.++++++..+.....+..+...|.+.|++++|.+.|+++.+. .|+ ...+..+...|.+.||
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999876665568889999999999999999999999864 454 5678888888877775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4e-12 Score=133.01 Aligned_cols=232 Identities=12% Similarity=0.026 Sum_probs=140.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 164 ~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
.+..+..+...|++++|+..|+.+.+.+ |.+..+|..+..++...|++++|...|++.++.. |.+...+..++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~ 95 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK----PDNQTALMALAV 95 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc----cccccccccccc
Confidence 3445666777888999999999888875 4567888888888999999999999999888876 778888888888
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHhHhCC-ccCCHHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKID--------------TQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTY 308 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~ 308 (827)
.|...|++++|.+.++......+... .......+..+...+.+.+|.+.|.+..+.. -..+..++
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999998888776432200 0001111112223334445555555444321 11234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 388 (827)
..+...+...|++++|...+++..+.. +-+..+|..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.
T Consensus 176 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 253 (323)
T d1fcha_ 176 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 253 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHC
Confidence 555555555555555555555555443 3334455555555555555555555555554432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003353 389 GKLDTALRLWDEMRI 403 (827)
Q Consensus 389 g~~~~A~~l~~~m~~ 403 (827)
|++++|++.|++..+
T Consensus 254 g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 254 GAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.8e-12 Score=132.41 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=155.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~ 281 (827)
-....+.+.|++++|...|+++++.. |.+..+|..+..+|...|++++|...|++..+..+. +...|..+...|.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 98 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccc
Confidence 45667889999999999999999987 888999999999999999999999999999887654 7889999999999
Q ss_pred HcCChhHHHHHHHHhHhCCccCCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHH
Q 003353 282 NKGLPYKAFEIYESMEKGECSLDGS----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFA 344 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~pd~~----------------t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~ 344 (827)
..|++++|.+.+++..... |+.. .....+..+...+.+.+|.+.+.++.+... ..+..++.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 9999999999999987642 2211 111112223344455566666665554321 23345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
.+...+...|++++|...|++..... +-+..+|..+...|.+.|++++|++.|++..+.... +..++..+..+|.+.|
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCC
Confidence 66666666666666666666655443 224555666666666666666666666666554321 3455555666666666
Q ss_pred ChhHHHHHHHHHHH
Q 003353 425 KLDIAMSIFTDMER 438 (827)
Q Consensus 425 ~~~~A~~~~~~m~~ 438 (827)
++++|.+.|++.++
T Consensus 255 ~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 255 AHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.3e-09 Score=111.30 Aligned_cols=196 Identities=10% Similarity=0.091 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
+++.+...+.+.+.+++|+++++++++.. |.+..+|+....++...|+ +++|+..++...+..++ +..+|+.+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln----P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~ 119 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence 44444455555555666666666666555 5555566655555555543 56666666555554443 555566555
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-- 355 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-- 355 (827)
..+.+.|++++|++.++++++... -+...|..+...+.+.|++++|.+.++++++.+ +.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 555556666666666666555321 145555555555666666666666666665554 3444555555444444433
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 356 ----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 356 ----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
+++|.+.+.+..+.. +.+...|+.+...+.. ...+++.+.++...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 345555555555443 2345555544443332 223445555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.3e-08 Score=105.49 Aligned_cols=210 Identities=10% Similarity=0.108 Sum_probs=173.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..++...+..++|+++++.+.+.+ |-+..+|+....++...| ++++|+..++..++.. |.+..+|+.+...+.
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~----p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH----HhhhhHHHHHhHHHH
Confidence 456677789999999999999986 567889999999988876 5899999999999988 899999999999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC------
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR------ 320 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~------ 320 (827)
+.|++++|+..++++.+..+. +..+|+.+...+.+.|++++|++.|+++++.... +...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 999999999999999987765 8999999999999999999999999999986433 67788887777777665
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 003353 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYVSLIESYAK 387 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~ 387 (827)
+++|.+.+.++.+.. +.+...|+.+...+.. ...+++.+.++...+.... .+...+..++..|..
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678999999998876 5678888888776654 4467888888877654322 345566666666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1e-07 Score=99.09 Aligned_cols=199 Identities=13% Similarity=0.037 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKER----NFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG----HRPSAPM 377 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~ 377 (827)
..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+...+....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444455555555555555444321 1111 01233344455555566666555555544321 1112333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAG--FRPN----FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL---PTPSTY 448 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~ 448 (827)
+..+...+...++..++...+.+..... .... ...+..+...+...|+.++|...++...+.... .....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4444445555555555555554443210 0000 122333344444555555555555544332111 112334
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTS----AGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMK 507 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~ 507 (827)
..+...+...|++++|...+++... .+..|+. .++..+...|...|++++|.+.+++.+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555555432 1222222 234444445555555555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1e-07 Score=99.06 Aligned_cols=271 Identities=12% Similarity=0.042 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC---
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-----FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID--- 269 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--- 269 (827)
........+...|++++|++++++.+... +.+ ..++..+...|...|++++|...|++..+.... ++
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 34445566778888888888888887764 222 346777788888888888888888876542111 11
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHhHhC----Ccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC
Q 003353 270 -TQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECS--L-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERN----FR 337 (827)
Q Consensus 270 -~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~ 337 (827)
..++..+...+...|++..+...+.+.... +.. + ....+..+...+...|+++.+...+....... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 345566677778888888888888776431 111 1 12345566677888899999988888877542 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC--GHRPS----APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP--- 408 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--- 408 (827)
....++..+...+...++..++...+.+.... ..... ...+..+...+...|++++|...+++..+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 23455666677778888888888888766531 11111 2345666677788899999998888766543222
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMER----AGFLPT-PSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
....+..+..++...|++++|...++.... .+..|+ ..++..+...|.+.|++++|.+.+++..+
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 244566678888899999999999888763 233333 34677788889999999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.6e-08 Score=101.71 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--------------cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNE--------------SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 179 ~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~--------------~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
.+..+|+++.... +.++..|..-+.-+.+ .+..++|..+|++.++... +.+...|...+..
T Consensus 34 Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~---p~~~~l~~~ya~~ 108 (308)
T d2onda1 34 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence 3556677776653 3455666554443322 2234666777777765432 5566677777777
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH-HHHcCCHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS-LAKSGRLDA 323 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~-~~~~g~~~~ 323 (827)
+.+.|++++|..+|+++.+..+......|...+....+.|+.+.|.++|+++.+.+.. +...|...... +...|+.+.
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHH
Confidence 7777777777777777766544433456777777777777777777777777665322 23333332222 233466777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRP--SAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++..+.. ..| ....|...+..-.+.|+.+.+.+++++
T Consensus 188 a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766653 4455667777777777777777777777766542 222 234566666665666677666666666
Q ss_pred HHH
Q 003353 401 MRI 403 (827)
Q Consensus 401 m~~ 403 (827)
+.+
T Consensus 267 ~~~ 269 (308)
T d2onda1 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=1.1e-07 Score=98.00 Aligned_cols=185 Identities=10% Similarity=0.091 Sum_probs=80.3
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+++.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33444444444332222333344444444444444444444444443321112233444444444444445555555444
Q ss_pred HhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC-
Q 003353 367 QGCGHRPSAPMYVSLIES-YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG-FLP- 443 (827)
Q Consensus 367 ~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p- 443 (827)
.+.+. .+...|...... +...|+.+.|..+|+.+.+.. ..+...|...++.+.+.|+++.|+.+|++..+.. ..|
T Consensus 161 l~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 44331 122222222211 122345555555555554432 1234445555555555555555555555544432 111
Q ss_pred -CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 444 -TPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 444 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
....|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133455555544555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=3.8e-09 Score=110.62 Aligned_cols=143 Identities=8% Similarity=0.039 Sum_probs=66.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA----------DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.+..++|++++++.++.. |.+..+|+..-..+... |++++|+..++...+..++ +...|..+..+
T Consensus 42 ~~~~~~al~~~~~~l~~~----P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 42 GELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 333467777777777665 66666665443333222 2244555555555444332 44445544444
Q ss_pred HHHcCC--hhHHHHHHHHhHhCCccCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 280 FLNKGL--PYKAFEIYESMEKGECSLDGSTYEL-MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 280 ~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
+...+. +++|+..++++.+.. +++...+.. ....+...+.+++|...++.+.+.+ +-+...|+.+...+.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCH
Confidence 444332 445555555544421 112333222 2233333444555555444444443 23444444444444444444
Q ss_pred HHH
Q 003353 357 DTS 359 (827)
Q Consensus 357 ~~A 359 (827)
++|
T Consensus 195 ~~A 197 (334)
T d1dcea1 195 PDS 197 (334)
T ss_dssp CCS
T ss_pred HHH
Confidence 443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=6e-09 Score=109.05 Aligned_cols=264 Identities=9% Similarity=-0.018 Sum_probs=186.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN----------ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~----------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...++|+++++.+...+ |-+...|+..-..+. ..|++++|+.+++..++.. |.+..+|..+..+
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~----pk~~~~~~~~~~~ 116 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHRCWL 116 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC----CCcHHHHHHhhHH
Confidence 44578999999998865 345556654433332 2345789999999999887 8899999999888
Q ss_pred HHHcCC--HHHHHHHHHHhHhCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCH
Q 003353 245 LAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVL-MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321 (827)
Q Consensus 245 ~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~n~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 321 (827)
+...++ +++|...++++.+..+. +...|... ...+...+.+++|++.+++.++.... +...|+.+..++.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCH
Confidence 888775 88999999999876543 66666544 46677789999999999999887543 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
++|...+....+.. | ........+...+..+++...+....... +++...+..++..+...|+.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88876665544432 1 11223344556677777888777777654 344555666677777778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT-PSTYSCLLEMH 455 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~ 455 (827)
.+..+. +..++..+..+|...|++++|.+.++...+.. |+ ..-|+.|...+
T Consensus 269 ~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~ 320 (334)
T d1dcea1 269 EPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF 320 (334)
T ss_dssp CTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred HhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHH
Confidence 654322 45566667777778888888888888877752 32 34445444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1e-07 Score=95.02 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
.|..|+..|...|+.++|...|+++++..|
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 355799999999999999999999997764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=3.8e-08 Score=98.28 Aligned_cols=150 Identities=12% Similarity=-0.027 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVP--GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p--~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (827)
.+.|+.-++.+.......+ ...+|..+...|.+.|++++|.+.|++.++.. |.+..+|+.+..+|.+.|++++|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~----p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC----CCCHHHHhhhchHHHHHHHHHHh
Confidence 3445555555555432111 11355555666666666666666666666665 56666666666666666666666
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 255 ~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+..|+++.+..+. +..+|..+..+|...|++++|.+.|++..+... .+......+..++.+.+..+.+..+.....
T Consensus 91 ~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 91 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6666666655443 455566666666666666666666666655321 133333333333344444444433333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=4.8e-06 Score=84.38 Aligned_cols=165 Identities=10% Similarity=-0.003 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHH----CCCCCC-H
Q 003353 412 LFTMIIESHAKSGKLDIAMSIFTDMERA----GF-LPTPSTYSCLLEMHAS-SGQVDSAMKLYNSMTS----AGLRPG-L 480 (827)
Q Consensus 412 t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~pd-~ 480 (827)
+|..+..+|.+.|++++|.+.+++..+. |- .....++..+...|.. .|++++|.+.|++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 3444444555555555555555543321 00 0012234444444533 4777777777776653 111111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-C---CH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-------SASDVLMVYIKDGSVDHALRWLRFMGSSGIR-T---NN 549 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-p---~~ 549 (827)
.++..+...+...|++++|.+.++++......... .+...+..+...|+++.|.+.+++..+.... + ..
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 35666677777888888888888887765433221 2334555666778888888888877754321 1 12
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 003353 550 FIVRQLFESCMK--NALYESAKPLLETYV 576 (827)
Q Consensus 550 ~~~~~ll~~~~~--~g~~~~A~~~~~~m~ 576 (827)
.....++.++.. .+.+++|+..|+++.
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 234455555443 234667777666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.4e-05 Score=75.30 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=88.9
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHH
Q 003353 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532 (827)
Q Consensus 453 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~ 532 (827)
..+...|++++|++.|.++ ..|+..+|..+..++...|++++|++.|++.++.++.....|..+..+|.+.|++++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3456677777777777654 245666777777777778888888888888777666555677777777888888888
Q ss_pred HHHHHHHHhhCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003353 533 ALRWLRFMGSSGI--------------RTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583 (827)
Q Consensus 533 A~~~~~~m~~~~~--------------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd 583 (827)
|++.|++..+... ..+ ..++..+..++.+.|++++|.+.|++..+..+.++
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 8877777654210 111 23445566678888999999998888887666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=1.7e-05 Score=80.10 Aligned_cols=96 Identities=9% Similarity=0.093 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C---CHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN-----F-GLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-P---TPS 446 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---~~~ 446 (827)
++..+...+.+.|++++|++.|++......... . ..+...+..+...|+++.|...+++..+.... + ...
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 344555555555555555555555544321111 0 11222333444555666666655555433211 0 112
Q ss_pred HHHHHHHHHHH--cCCHhHHHHHHHHHH
Q 003353 447 TYSCLLEMHAS--SGQVDSAMKLYNSMT 472 (827)
Q Consensus 447 t~~~li~~~~~--~g~~~~A~~l~~~m~ 472 (827)
....++.++.. .+.+++|+..|+++.
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 33444444443 234566666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.2e-05 Score=73.97 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=66.6
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+...|++++|++.|+++. +|+..+|..+..+|.+.|++++|.+.|++.++.+ +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3445555555555555431 2445555555555555666666666666555554 3445555555555666666666
Q ss_pred HHHHHHHHHhCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 359 SMKVYMEMQGCGH--------------RPS-APMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 359 A~~~~~~m~~~g~--------------~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
|.+.|++...... ..+ ..++..+..++.+.|++++|.+.+....+...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6655555543210 000 23444555566667777777776666655433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.8e-05 Score=67.76 Aligned_cols=92 Identities=15% Similarity=-0.002 Sum_probs=63.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
..+.+.+.|++++|+..|++.++.. |.+..+|..+..+|.+.|++++|+..++...+.++. +...|..+..++..
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHH
Confidence 4555666777777777777777665 666777777777777777777777777777666544 66667777777777
Q ss_pred cCChhHHHHHHHHhHhC
Q 003353 283 KGLPYKAFEIYESMEKG 299 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~ 299 (827)
.|++++|+..|++..+.
T Consensus 84 ~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 77777777777777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.3e-05 Score=68.62 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=91.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+-..|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|+..++..++.. +.+...|..+..++..
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc----cchhhHHHHHHHHHHH
Confidence 566678899999999999999976 6788899999999999999999999999999988 8999999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
.|++++|+..|++..+..+. +...+..+-
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 112 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 112 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999999987654 555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2e-05 Score=71.67 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+....+.+.+.|++++|...|++.++.. |.+...|..+..+|.+.|++++|...|++..+..+. +..+|..+..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc----hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 4445667778888888888888888876 778888888888888888888888888888776644 66778888888
Q ss_pred HHHcCChhHHHHHHHHhHhC
Q 003353 280 FLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~ 299 (827)
+...|++++|.+.+++....
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=1.1e-05 Score=76.40 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
|+...+......+.+.|++++|+..|++.+... |.+..+|+.+..+|.+.|++++|+..|++..+..+. +..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~----p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHH
Confidence 667777777888888888888888888888876 778888888888888888888888888888876544 677888
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHh
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+|.+.|++++|+..|++..+
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888887754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.0044 Score=60.46 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 306 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
..+..|...+-+.+++++|.+.|++..+.| +...+..|...|.. ..+...|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344444455555556666666666555544 23344444444443 335555555555555433 22333333
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcC
Q 003353 382 IESYAK----AGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 382 i~~~~~----~g~~~~A~~l~~~m~~~g 405 (827)
...+.. ..+.+.|...++...+.|
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh
Confidence 333322 234455555555544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.09 E-value=0.0049 Score=60.10 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
+..+..+...+-+.+++++|++.|++..+.+ +..++..|..+|.. ..+...|...+....+.+ +...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a 72 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 72 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccch
Confidence 4455555556666666666666666665543 34555555555554 445666666666655532 3334
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003353 273 YNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFA 344 (827)
Q Consensus 273 ~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 344 (827)
...+...+.. ..+.+.|...++.....|.. .....+...+.. ......+...+......+ +...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 146 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 146 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhh
Confidence 4444443332 23455566666555554321 222222222221 223444444444444332 234444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 345 SLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 345 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
.|...|.. ..+...+...++...+.| +..+...+...|.. ..++++|+..|.+..+.| +...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHH
Confidence 45444443 233444445555444432 33333334333333 334555555555554443 23333334
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcC
Q 003353 417 IESHAK----SGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 417 i~~~~~----~g~~~~A~~~~~~m~~~g 440 (827)
..+|.+ ..+.++|.+.|++..+.|
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 444432 224444555555444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.7e-05 Score=70.68 Aligned_cols=105 Identities=9% Similarity=0.009 Sum_probs=92.0
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+-..+++++|+..|+.+.+.+ +.+...|..+..++.+.|++++|...|+++++.. +.+..+|..++.+|..
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~----p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc----ccchHHHHHHHHHHHH
Confidence 556678899999999999999986 6788999999999999999999999999999987 8899999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.|++++|...|++..+..+. +...+..+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~ 121 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMKYQEC 121 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 99999999999999987644 55555554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.00 E-value=2.2e-05 Score=66.63 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
..+.+.|++++|...|++.++.. |.+..+|..+..++.+.|++++|+..|++..+..+. +..+|..+...|...|
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc----cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 33444555555555555555444 444555555555555555555555555554444332 4445555555555555
Q ss_pred ChhHHHHHHHH
Q 003353 285 LPYKAFEIYES 295 (827)
Q Consensus 285 ~~~~A~~~~~~ 295 (827)
++++|++.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.00 E-value=2.3e-05 Score=66.49 Aligned_cols=94 Identities=4% Similarity=-0.065 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 003353 162 PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241 (827)
Q Consensus 162 p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~l 241 (827)
++....+..+...|++++|+..|+.+.+.. +-+..+|..+..++.+.|++++|+..|++.++.. |.+..+|..+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~l 90 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAAL 90 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc----cccccchHHH
Confidence 456667777777888888888888887765 4567788888888888888888888888888776 7778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 003353 242 IQYLAKADKLEMSYCCFKKV 261 (827)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m 261 (827)
...|...|++++|.+.|++.
T Consensus 91 a~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 91 AVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 88888888888888887764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.92 E-value=6.6e-05 Score=70.62 Aligned_cols=98 Identities=9% Similarity=-0.053 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
|+...+......+.+.|++++|...|+++++.. +.+...|+.+..+|.+.|++++|+..|++.++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 334444444455555555555555555555443 3444455555555555555555555555554432 12344455555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003353 383 ESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~ 402 (827)
.+|.+.|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=5.1e-05 Score=65.30 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=56.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhHhCCCCCC-HHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK---LEMSYCCFKKVLDSDCKID-TQSYNVLM 277 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~n~li 277 (827)
.+++.+...+++++|.+.|++.+..+ |.+..++..+..++.+.++ +++|+.+|+++.+.++.|+ ..+|..+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 34555666666667777777666665 6666666666666665443 3346666666665443333 23555666
Q ss_pred HHHHHcCChhHHHHHHHHhHh
Q 003353 278 TLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+|.+.|++++|++.|++.++
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666666666665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.0033 Score=63.57 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
|+..--..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k 73 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 73 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence 4444445667777788888888888876532 345677778888888887777644 2566888
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
.+...+.+......| .+...+...+......++..|-..|.+++...+++...... ..+...++-++..|++.+
T Consensus 74 ~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 74 EVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 888887776655433 22233334466666778888888888888888888776443 566677888888888754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=8.2e-05 Score=63.94 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS---VDHALRWLRFMGSSGIRTNN-FIVRQLFESCM 560 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 560 (827)
.+++.+...+++++|++.|+..+..++....+...+..++.+.++ +++|+.+|+++.+.+..|+. ..+..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 344555555566666666666655554444455555555554332 33456666655544333322 23444555566
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 003353 561 KNALYESAKPLLETYVESA 579 (827)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~g 579 (827)
+.|++++|++.|+++++..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 6666666666666665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.016 Score=58.27 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
.++..--..+++.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 34445555667777788888888888876653 6677777888888888887776542 56688888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 391 (827)
..+|.+......+ .+.......+......++..|-..|..++...+++...... ..+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888777665443 22223334455556677888888888888888888765432 456677777888777754 2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
++.. +.+...+-.-| ..-++..|.+.+.+.+ ++-.|.+.|++++|..+.-+-
T Consensus 149 ~kl~---e~l~~~s~~y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~ 200 (336)
T d1b89a_ 149 QKMR---EHLELFWSRVN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNH 200 (336)
T ss_dssp HHHH---HHHHHHSTTSC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH---HHHHhccccCC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHc
Confidence 3322 22322111111 1223344444433333 344455555555555443221
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 003353 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551 (827)
Q Consensus 472 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (827)
.++..-....+..+.+.++.+...++....++. .|+ ....++......-+..+..+.+
T Consensus 201 -----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~-~i~~lL~~v~~~~d~~r~V~~~-------------- 258 (336)
T d1b89a_ 201 -----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL-LLNDLLMVLSPRLDHTRAVNYF-------------- 258 (336)
T ss_dssp -----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG-GHHHHHHHHGGGCCHHHHHHHH--------------
T ss_pred -----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH-HHHHHHHHhccCCCHHHHHHHH--------------
Confidence 122222233344455555555444444444332 121 2333333333333333333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 552 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
.+.++..-....++...+.| +..+.++|...|...++++.-+...
T Consensus 259 --------~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 259 --------SKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --------HHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------HhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 33445555555665554444 3356777777777777766555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=1.8e-05 Score=86.62 Aligned_cols=115 Identities=10% Similarity=-0.054 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418 (827)
Q Consensus 339 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 418 (827)
+...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|++..+..+. +...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence 34455566666666666666666665554311 1235555666666677777777777776665332 4566677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003353 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458 (827)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 458 (827)
.+...|+..+|...|.+..... .|-..++..|...+.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 7777777777777777666543 34566666666655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00062 Score=62.08 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=55.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPG-------------DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~-------------~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~ 234 (827)
+..+...++++.|+..|..+.+.....+. ..+|+.+..+|.+.|++++|+..++..+... |.+
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~----p~~ 95 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD----SNN 95 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc----ccc
Confidence 45566788999999999888764321111 1234445555555666666666666655554 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
+.++..+..+|...|++++|...|++..+..
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 5555556666666666666666666555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00057 Score=58.98 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC-----HHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID-----TQSY 273 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~ 273 (827)
+..+...+.+.|++++|+..|++.++.. |.+..++..+..+|.+.|++++|+..++++++..+. ++ ..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455666777777777777777777776 667777777777777777777777777776643211 01 2355
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
..+...+...+++++|++.|++...
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5666666667777777777766554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.0012 Score=60.08 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
+|+.+..+|.+.|++++|...++..++.+ +.++.+|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44455555666666666666666666554 345555666666666666666666666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=3.6e-05 Score=84.21 Aligned_cols=229 Identities=9% Similarity=-0.034 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258 (827)
Q Consensus 179 ~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (827)
+|.+.|+.+.+.. +....++..+..++...+++++| |++++... +.....++..... . ...+..+.+.+
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d----p~~a~~~~~e~~L-w-~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD----LEYALDKKVEQDL-W-NHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC----HHHHHHHTHHHHH-H-HHHTHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC----hhhHHHHhHHHHH-H-HHHHHHHHHHH
Confidence 5777788777643 12233455566666667777665 67766554 2222222211111 1 11245566667
Q ss_pred HHhHhCCCCCCHHHHHHH--HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 259 KKVLDSDCKIDTQSYNVL--MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 259 ~~m~~~g~~p~~~~~n~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
+...+....++..-.... ...+...+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+....+..
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 666654333332222111 112223455566665555443321 2345567777778888888888888777766533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 337 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
+ ..++..+.+.+...|++++|...|.+..+.. +.+..+|+.+...+...|+..+|+..|.+..... .|-..++..|
T Consensus 151 -~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 -C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp -H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred -H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 1 2567778889999999999999999988764 3456789999999999999999999999888764 3567778888
Q ss_pred HHHHHhcC
Q 003353 417 IESHAKSG 424 (827)
Q Consensus 417 i~~~~~~g 424 (827)
...+.+..
T Consensus 227 ~~~~~~~~ 234 (497)
T d1ya0a1 227 QKALSKAL 234 (497)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77776544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.00097 Score=61.26 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-----ERNFRPSFNI 342 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 342 (827)
..+..+...+.+.|++++|+..++++.+.. +-+...|..++.++.+.|+.++|.+.|+++. +.|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345555555555666666666666555532 2245555566666666666666666555542 2455555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.0013 Score=59.78 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSS------------KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 268 (827)
......+.+.|++++|+..|.++++... .-.+.....|..+..+|.+.|++++|+..+++.++..+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~- 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS- 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence 3445556667777777777766654210 000112233333444444444444444444444443322
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..+|..+..+|...|++++|++.|++..+
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.35 E-value=0.00038 Score=61.71 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA----------DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 211 g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
+.+++|+..|+..++.. |.+..++..+..+|... +.+++|+..|++..+..+. +..+|+.+..+|
T Consensus 11 ~~fe~A~~~~e~al~~~----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 33444444444444444 44444444444444322 2234445555554444332 444444444444
Q ss_pred HH
Q 003353 281 LN 282 (827)
Q Consensus 281 ~~ 282 (827)
..
T Consensus 86 ~~ 87 (145)
T d1zu2a1 86 TS 87 (145)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.34 E-value=0.0023 Score=56.90 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCC---CCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYV---PGD-----------ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~---p~~-----------~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~ 233 (827)
+..+-..+++++|+..|..+.+.-... ++. .+|+.+..+|.+.|++++|++.++..++.. |.
T Consensus 24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~----p~ 99 (153)
T d2fbna1 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID----KN 99 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc----ch
Confidence 445556788888888888877642111 111 133344444555555555555555555544 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
++.+|..+..+|...|++++|...|++..+..
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.001 Score=57.34 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
.+...|.+.|++++|+..|++.++. .| +...+..+..+|.+.|++++|.+.++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3444455555555555555555542 22 233444444455555555555555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.32 E-value=0.00022 Score=70.26 Aligned_cols=123 Identities=11% Similarity=-0.063 Sum_probs=82.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
..+.|++++|+..+++.++.. |.+...+..+...|+..|++++|...|+...+..+. +...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~----P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcccc
Confidence 456788899999999888887 888888889999999999999999888888876543 455555555555444433
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
+++..-...-...+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 333222221111122223344455566677788888888888887765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.28 E-value=0.0027 Score=56.45 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
+|+.+..+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555443 344455555555555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.28 E-value=0.0021 Score=58.19 Aligned_cols=105 Identities=9% Similarity=-0.037 Sum_probs=58.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCC--CCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWY--VPGD-----------ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~--~p~~-----------~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~ 233 (827)
.+..+...|++++|+..|+.+...... ..+. .+|+.+..++.+.|++++|+..++..++.. |.
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~----p~ 96 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD----SA 96 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc----cc
Confidence 356667788899999988877653111 1111 123344455555566666666666655554 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
+..+|..+..+|...|++++|...|+++.+..+. +...+..+
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l 138 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQI 138 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 5555555555666666666666666555554432 44444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.25 E-value=0.0022 Score=58.16 Aligned_cols=62 Identities=8% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
.|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555433 234444555555555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.23 E-value=0.0033 Score=56.84 Aligned_cols=62 Identities=3% Similarity=-0.047 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
+|+.+..+|.+.|++++|...+++..+.+ +.+..+|..+..+|...|++++|...|.++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555566666666666666666554 455556666666666666666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.19 E-value=0.00079 Score=59.54 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=69.1
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES----------RDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~----------g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~ 240 (827)
+.+++.+++|++.|+.+.+.+ |.++.++..+..+|... +.+++|+..|++.++.. |.+..+|..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~----P~~~~a~~~ 80 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----PKKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc----chhhHHHhh
Confidence 455667899999999999986 67888999888888743 45688999999999988 999999999
Q ss_pred HHHHHHHcCC-----------HHHHHHHHHHhHhC
Q 003353 241 VIQYLAKADK-----------LEMSYCCFKKVLDS 264 (827)
Q Consensus 241 li~~~~~~g~-----------~~~A~~~~~~m~~~ 264 (827)
+..+|...|+ +++|.+.|++..+.
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 9999987654 34555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.0027 Score=58.11 Aligned_cols=70 Identities=10% Similarity=-0.043 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV-----ESAAKVDLVL 586 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~t 586 (827)
.+..+...+.+.|++++|+..++++.+... -+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 344556666666666666666666665432 245566666666666666666666666653 3467766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.00073 Score=66.36 Aligned_cols=121 Identities=10% Similarity=-0.053 Sum_probs=91.4
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..|+.++|+..++.+.+.+ |.+...+..+...|+..|++++|.+.++...+.. |.+...+..+...+...+..+
T Consensus 8 ~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~----P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF----PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhccccH
Confidence 4589999999999999986 6788999999999999999999999999999987 777788777777766555554
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
++..-.......+..++...+......+...|+.++|.+.+++..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 44332222111122223344455566778899999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.51 E-value=0.005 Score=54.76 Aligned_cols=89 Identities=13% Similarity=-0.004 Sum_probs=44.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCch--
Q 003353 453 EMHASSGQVDSAMKLYNSMTSAG-LRPG----------LSTYTALLTLLAKRKLVDVAAKILLEMKTMG-----YSVD-- 514 (827)
Q Consensus 453 ~~~~~~g~~~~A~~l~~~m~~~g-~~pd----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~~~-- 514 (827)
..+.+.|++++|+..|++.++.. -.|+ ..+|+.+..+|.+.|++++|.+.+++.++.. ..++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 34445566666666666665410 0011 2355556666666666666666666655321 1110
Q ss_pred ----HhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 515 ----VSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 515 ----~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
..++.+..+|.+.|++++|+..|++..
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 123444455555555555555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.23 E-value=0.02 Score=50.55 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=33.3
Q ss_pred HHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCC--C------CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 199 CYVML--FDVLNESRDFDGMLSLFDEMVHDSSKNGI--S------LFSAYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 199 ~~~~l--i~~l~~~g~~~~A~~l~~~m~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
+|..+ ...+.+.|++++|+..|++.++....... . ...+|+.+..+|.+.|++++|...+++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 44444 34445667777777777777654310000 0 12345555555566666555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.013 Score=47.04 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK---NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
+.+.+..+...+.+.|++++|...|++.++.... .......+++.|..+|.+.|++++|+..++++.+..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 4455566778888888888888888887764311 11223567777888888888888888888888776544 4555
Q ss_pred HHHH
Q 003353 273 YNVL 276 (827)
Q Consensus 273 ~n~l 276 (827)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.029 Score=44.71 Aligned_cols=74 Identities=14% Similarity=-0.033 Sum_probs=61.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSW----YVP-GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~----~~p-~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~ 239 (827)
+.++.++...++++.|+..|+.+.+... ..+ ...++..+..++.+.|++++|+..++++++.. |.+..+++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~----P~~~~a~~ 84 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD----PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC----cCCHHHHH
Confidence 4578888999999999999999876421 112 25689999999999999999999999999997 88888877
Q ss_pred HHH
Q 003353 240 RVI 242 (827)
Q Consensus 240 ~li 242 (827)
.+.
T Consensus 85 Nl~ 87 (95)
T d1tjca_ 85 NLK 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.11 E-value=0.73 Score=37.62 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 512 (827)
..+..++.+.+.|+-++-.++++++.+. -+|++.....+..+|.+.|...++-+++.++-+.|.+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3444455556666666666666665543 3455556666666666666666666666666666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.65 E-value=0.69 Score=38.72 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHcC
Q 003353 321 LDAAIKLFQEMKERN 335 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g 335 (827)
+++|.+.|++..+.|
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 344444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.09 E-value=0.84 Score=38.18 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHhHhCC
Q 003353 285 LPYKAFEIYESMEKGE 300 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g 300 (827)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.53 E-value=2.9 Score=33.99 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.+..++.+.+.|+-+.-.+++..+.+.+ +++....-.+..+|.+.|...++-+++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444455555555555555555544433 44555555555555555555555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.82 E-value=4.4 Score=32.97 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=4.6
Q ss_pred HcCCHHHHHHHHH
Q 003353 247 KADKLEMSYCCFK 259 (827)
Q Consensus 247 ~~g~~~~A~~~~~ 259 (827)
+.|++++|.+.++
T Consensus 85 klgdy~~A~~~~~ 97 (124)
T d2pqrb1 85 KLGEYSMAKRYVD 97 (124)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHH
Confidence 3333333333333
|