Citrus Sinensis ID: 003360
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 826 | ||||||
| 225431423 | 1053 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.780 | 0.628 | 0.0 | |
| 296088652 | 1054 | unnamed protein product [Vitis vinifera] | 0.980 | 0.768 | 0.626 | 0.0 | |
| 356561056 | 1055 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.780 | 0.602 | 0.0 | |
| 356529675 | 1061 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.775 | 0.593 | 0.0 | |
| 449456949 | 1052 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.770 | 0.597 | 0.0 | |
| 449495115 | 1053 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.770 | 0.595 | 0.0 | |
| 357484159 | 1124 | Syntaxin-binding protein [Medicago trunc | 0.984 | 0.723 | 0.535 | 0.0 | |
| 224084111 | 890 | predicted protein [Populus trichocarpa] | 0.926 | 0.859 | 0.558 | 0.0 | |
| 356538385 | 961 | PREDICTED: uncharacterized protein LOC10 | 0.880 | 0.756 | 0.561 | 0.0 | |
| 145353594 | 1049 | transducin/WD40 domain-containing protei | 0.961 | 0.756 | 0.525 | 0.0 |
| >gi|225431423|ref|XP_002280019.1| PREDICTED: uncharacterized protein LOC100262676 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/839 (62%), Positives = 647/839 (77%), Gaps = 17/839 (2%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG------ 55
G N+LQ + H+TK VTSACWACP G KV VGYSNG++ IW V I +
Sbjct: 218 GVNMLQPLSHDTKTVTSACWACPFGGKVVVGYSNGDVFIWNVLHIPDPSNGAAADKDLYS 277
Query: 56 TQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTES 115
+Q PI KLNLGYKL+KIPI+SLKW YADGKA+RLY+MG SD S NLLQ++LLNEQTES
Sbjct: 278 SQSAPIYKLNLGYKLEKIPIASLKWAYADGKATRLYVMGGSDIQSTNLLQVILLNEQTES 337
Query: 116 RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR 175
RT KL + L EPC+DM I+SSSS+ +K KQDSFLLLGKSG YA+DD IE+YLLQ QSR
Sbjct: 338 RTIKLGIHLPEPCVDMVIVSSSSEQSKHKQDSFLLLGKSGCMYAYDDYVIEKYLLQCQSR 397
Query: 176 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDG 235
S PS PKE+M+K+PF DSSIT K IT N L+S+DEDY LAKS+PP L E K KD
Sbjct: 398 SSPSLPKEIMVKLPFSDSSITIAKFITENPNFLNSSDEDYVSLAKSIPPFLPSEAKPKDE 457
Query: 236 SQSHS-------KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTA 288
++ +S K+KNL+ITGHS+GAI FWD+SCP L ILSLKQQSE D SLSGI LTA
Sbjct: 458 TRLNSTNFGGFAKIKNLYITGHSNGAIYFWDLSCPFLLPILSLKQQSEDDLSLSGIALTA 517
Query: 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKING 347
LY+DG SR L+SGDQ+GMVRIFK K E +A SF+ GS KKG++HII SVK++K+NG
Sbjct: 518 LYFDGHSRYLISGDQNGMVRIFKFKTEAYATATSFMPLQGSTKKGSNHIIQSVKLIKVNG 577
Query: 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407
S++S++++R S+HLA+GSDQGYV L+D E P++LYQK I S++S+G++S+ FETC L GF
Sbjct: 578 SVLSIDISRGSRHLAIGSDQGYVSLIDMESPSLLYQKLIESELSTGVISVWFETCILHGF 637
Query: 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVA 467
EKN L +ATKDSS+L LDSD GN LST++IHPKKPS+ALFMQIL+G D + + S
Sbjct: 638 EKNILAVATKDSSILALDSDTGNTLSTSMIHPKKPSKALFMQILDGHDAFGKRSYTSENL 697
Query: 468 GMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS 527
+NKG+ E++ KQ +LLCSEKAA YSL+H +QG+KKV YKKKF+SS CCWASTFY+
Sbjct: 698 DLNKGNYIEDS--KQLSLLLCSEKAAYVYSLTHVIQGIKKVHYKKKFNSSCCCWASTFYT 755
Query: 528 GSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMV 587
SD GL+L+FT+GK EIRSLPELSLLKETSI+G + T K NSLSN+ +CSS DGE+I+V
Sbjct: 756 PSDAGLVLIFTNGKIEIRSLPELSLLKETSIKGLAFSTSKSNSLSNSSVCSSRDGEIIVV 815
Query: 588 NGNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKG 647
NG+QE F +S+L Q + +R LDSA QVY D + QEG++S +V EKKKGIF SV+KG
Sbjct: 816 NGDQEMFALSSLLQNEIYRPLDSARQVYRKDLVVSQEGLISGPLVHKEKKKGIFSSVIKG 875
Query: 648 NKTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIR 707
+KTK PD+E E+ E IEEL++IFS ANF + NLD++E+E L+IDDIDL+
Sbjct: 876 SKTKHVPDMEAEDAKESIEELSSIFSVANFPLYAGKGDNLDMDEEEVELDIDDIDLEDPG 935
Query: 708 EKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYG 767
EKPK Q+M+A +NKQ L+SK QA KGK K +K KNEK++ KEE QDEK GAVDQIKKKYG
Sbjct: 936 EKPKGQNMMAALNKQKLTSKFQALKGKLKHVKLKNEKSSTKEEPQDEKAGAVDQIKKKYG 995
Query: 768 FSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKKSS 826
F SGE SV KMAESKL+EN KKLQGIN+KTTEMQDTA+SFS MAK+VLR AE DK+SS
Sbjct: 996 FPISGESSVIKMAESKLNENLKKLQGINIKTTEMQDTAKSFSFMAKQVLR-AEQDKQSS 1053
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088652|emb|CBI37643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/833 (62%), Positives = 640/833 (76%), Gaps = 23/833 (2%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPI 61
G N+LQ + H+TK VTSACWACP G KV VG NG + S +Q PI
Sbjct: 237 GVNMLQPLSHDTKTVTSACWACPFGGKVVVG--NGAAADKDLYS----------SQSAPI 284
Query: 62 CKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLA 121
KLNLGYKL+KIPI+SLKW YADGKA+RLY+MG SD S NLLQ++LLNEQTESRT KL
Sbjct: 285 YKLNLGYKLEKIPIASLKWAYADGKATRLYVMGGSDIQSTNLLQVILLNEQTESRTIKLG 344
Query: 122 LPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAP 181
+ L EPC+DM I+SSSS+ +K KQDSFLLLGKSG YA+DD IE+YLLQ QSRS PS P
Sbjct: 345 IHLPEPCVDMVIVSSSSEQSKHKQDSFLLLGKSGCMYAYDDYVIEKYLLQCQSRSSPSLP 404
Query: 182 KEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHS- 240
KE+M+K+PF DSSIT K IT N L+S+DEDY LAKS+PP L E K KD ++ +S
Sbjct: 405 KEIMVKLPFSDSSITIAKFITENPNFLNSSDEDYVSLAKSIPPFLPSEAKPKDETRLNST 464
Query: 241 ------KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294
K+KNL+ITGHS+GAI FWD+SCP L ILSLKQQSE D SLSGI LTALY+DG
Sbjct: 465 NFGGFAKIKNLYITGHSNGAIYFWDLSCPFLLPILSLKQQSEDDLSLSGIALTALYFDGH 524
Query: 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLN 353
SR L+SGDQ+GMVRIFK K E +A SF+ GS KKG++HII SVK++K+NGS++S++
Sbjct: 525 SRYLISGDQNGMVRIFKFKTEAYATATSFMPLQGSTKKGSNHIIQSVKLIKVNGSVLSID 584
Query: 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413
++R S+HLA+GSDQGYV L+D E P++LYQK I S++S+G++S+ FETC L GFEKN L
Sbjct: 585 ISRGSRHLAIGSDQGYVSLIDMESPSLLYQKLIESELSTGVISVWFETCILHGFEKNILA 644
Query: 414 IATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473
+ATKDSS+L LDSD GN LST++IHPKKPS+ALFMQIL+G D + + S +NKG+
Sbjct: 645 VATKDSSILALDSDTGNTLSTSMIHPKKPSKALFMQILDGHDAFGKRSYTSENLDLNKGN 704
Query: 474 PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGL 533
E++ KQ +LLCSEKAA YSL+H +QG+KKV YKKKF+SS CCWASTFY+ SD GL
Sbjct: 705 YIEDS--KQLSLLLCSEKAAYVYSLTHVIQGIKKVHYKKKFNSSCCCWASTFYTPSDAGL 762
Query: 534 MLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEA 593
+L+FT+GK EIRSLPELSLLKETSI+G + T K NSLSN+ +CSS DGE+I+VNG+QE
Sbjct: 763 VLIFTNGKIEIRSLPELSLLKETSIKGLAFSTSKSNSLSNSSVCSSRDGEIIVVNGDQEM 822
Query: 594 FFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGNKTKQA 653
F +S+L Q + +R LDSA QVY D + QEG++S +V EKKKGIF SV+KG+KTK
Sbjct: 823 FALSSLLQNEIYRPLDSARQVYRKDLVVSQEGLISGPLVHKEKKKGIFSSVIKGSKTKHV 882
Query: 654 PDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIREKPKEQ 713
PD+E E+ E IEEL++IFS ANF + NLD++E+E L+IDDIDL+ EKPK Q
Sbjct: 883 PDMEAEDAKESIEELSSIFSVANFPLYAGKGDNLDMDEEEVELDIDDIDLEDPGEKPKGQ 942
Query: 714 SMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYGFSHSGE 773
+M+A +NKQ L+SK QA KGK K +K KNEK++ KEE QDEK GAVDQIKKKYGF SGE
Sbjct: 943 NMMAALNKQKLTSKFQALKGKLKHVKLKNEKSSTKEEPQDEKAGAVDQIKKKYGFPISGE 1002
Query: 774 PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKKSS 826
SV KMAESKL+EN KKLQGIN+KTTEMQDTA+SFS MAK+VLR AE DK+SS
Sbjct: 1003 SSVIKMAESKLNENLKKLQGINIKTTEMQDTAKSFSFMAKQVLR-AEQDKQSS 1054
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561056|ref|XP_003548801.1| PREDICTED: uncharacterized protein LOC100811900 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/837 (60%), Positives = 616/837 (73%), Gaps = 14/837 (1%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS--ILNLKTEECGTQIT 59
G N+LQ ++ ETK+VTSACW CP GSK VGY+NGE+ IW + S I N E Q T
Sbjct: 220 GENMLQPLHTETKKVTSACWVCPFGSKAIVGYNNGELFIWSIRSLNIGNGSASEHSYQNT 279
Query: 60 PICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTK 119
P+ KLNLGYK DKI I S+KWVYA GKASRLYIMGASD + NLLQ+VLLNE TE+RT K
Sbjct: 280 PLLKLNLGYKSDKISIGSIKWVYAGGKASRLYIMGASDCATSNLLQVVLLNEHTEARTIK 339
Query: 120 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 179
L L LSE CIDMEIIS+S++ +K KQDSF+LLGKSGH Y +DD IERYLLQ QS+S PS
Sbjct: 340 LGLHLSECCIDMEIISTSTEQSKNKQDSFILLGKSGHLYLYDDILIERYLLQCQSKSTPS 399
Query: 180 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD----- 234
PKEV +K+P +SSIT K I+ N +L+ DE Y L S P + ET KD
Sbjct: 400 LPKEVTVKLPLAESSITTAKFISNNPNVLTFEDEYYRQLITSYPLFVPVETNQKDEISLS 459
Query: 235 --GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 292
SKV+NL+ITGHS+GAINFWD SCP+F IL LKQQSE D SLSGIPLTALY+D
Sbjct: 460 SAKFTGFSKVQNLYITGHSNGAINFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFD 519
Query: 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG-SKKGNSHIIHSVKVMKINGSIIS 351
S +LVSGDQSGMV +F+ K EP+A NSF+S TG +KKG HII SVK +KING+I+S
Sbjct: 520 SNSPLLVSGDQSGMVCVFRFKTEPYAT-NSFMSLTGGTKKGTDHIIQSVKHVKINGAILS 578
Query: 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411
LN++ + HLAVGSDQG+V + + +GPT+LYQKHIAS+IS+GI+SLQF T SL GFEKN
Sbjct: 579 LNIDPSLMHLAVGSDQGHVSVFNIDGPTLLYQKHIASEISAGIISLQFLTSSLHGFEKNI 638
Query: 412 LVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNK 471
L + TKDSSVL LD + GN L T IHPKKPS+ALFMQ+L+GQ G+ + ++
Sbjct: 639 LAVGTKDSSVLALDKEAGNTLGTGTIHPKKPSKALFMQVLDGQGAPVNGSITKDGLESSE 698
Query: 472 GSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDV 531
+ E+A KQ ++LLCSEKA YSL HA+QGVKKVLYKK+FHSS+CCWASTFYS SDV
Sbjct: 699 RNHIEDATTKQQYILLCSEKALYVYSLVHAIQGVKKVLYKKRFHSSTCCWASTFYSPSDV 758
Query: 532 GLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQ 591
GL+L+FTSGK E+RSLPELSL+ ETSIRG+ Y PK S S +C S G+L++VNGNQ
Sbjct: 759 GLILIFTSGKVELRSLPELSLIVETSIRGYNYSPPKLKSFSGCQICCSSKGDLVLVNGNQ 818
Query: 592 EAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLK---GN 648
E F +S L QR+ FR LDS +Y + L E V ++ EKKKGIF SV+K G+
Sbjct: 819 EFFVVSLLVQRNIFRLLDSISCIYRKNMMLSPEVFVPGPVIYKEKKKGIFSSVIKDFAGS 878
Query: 649 KTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIRE 708
K K AP +E E+T E I+EL+ IFS NF CD++N NL ++EDE LNIDDIDLD E
Sbjct: 879 KEKHAPILETEDTTESIQELSAIFSNENFPCDADNNDNLTVDEDELELNIDDIDLDDHEE 938
Query: 709 KPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYGF 768
K K+QS+L +NK+ L+ K QA KG+ K+MKG +K + KEEQQDE+ GAVDQIKKKYGF
Sbjct: 939 KHKDQSILGALNKKKLTGKFQALKGRLKEMKGNIQKTSSKEEQQDEQAGAVDQIKKKYGF 998
Query: 769 SHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKKS 825
S S E S AK+AESKL EN KKLQGINL+TTEMQD A+SFS++A +VLR AE ++++
Sbjct: 999 SSSNETSFAKLAESKLQENMKKLQGINLRTTEMQDKAKSFSTLANQVLRTAEQERRN 1055
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529675|ref|XP_003533414.1| PREDICTED: uncharacterized protein LOC100793138 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/843 (59%), Positives = 619/843 (73%), Gaps = 20/843 (2%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS--ILNLKTEECGTQIT 59
GGN+LQ ++ ETK+VTSACW CP GSKV VGY+NGE+ IW +PS I N + Q T
Sbjct: 220 GGNMLQPLHTETKKVTSACWVCPFGSKVVVGYNNGELFIWSIPSLNIGNGSASKSSNQNT 279
Query: 60 PICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTK 119
P+ KLNLGYK DKI I S+KWVYA GKASRLY+MGASDF + NLLQ+VLLNEQTE+RT K
Sbjct: 280 PLLKLNLGYKSDKISIGSIKWVYAGGKASRLYVMGASDFATSNLLQVVLLNEQTEARTIK 339
Query: 120 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 179
L L LSE CIDMEIIS+S++ +K KQDSF+LLGKSGH Y +DD IERYL+Q QS+S PS
Sbjct: 340 LGLHLSECCIDMEIISTSTEQSKNKQDSFILLGKSGHLYLYDDSLIERYLIQCQSKSTPS 399
Query: 180 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ-- 237
PKEV++K+P +SSIT K I+ N +L+S DE Y L K+ P + ET KDG
Sbjct: 400 LPKEVIVKLPLAESSITTAKFISNNPNMLTSEDEYYRQLIKNCPLFVPVETNQKDGISLS 459
Query: 238 -----SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 292
S V+NL+ITGHS+G I FWD SCP+F IL LKQQSE D SLSGIPLTALY++
Sbjct: 460 SAKFTGFSNVQNLYITGHSNGTITFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFN 519
Query: 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG-SKKGNSHIIHSVKVMKINGSIIS 351
S +LVSGDQ GMV IF+ K EP+A NSFLS TG +KKG HII SVK +K NG+I+S
Sbjct: 520 SNSLLLVSGDQCGMVCIFRFKPEPYAT-NSFLSLTGGTKKGTDHIIQSVKRVKSNGAILS 578
Query: 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411
LN++ +S HLAVGSDQG+V + + +GPT+LYQKHIAS+IS+GI+SLQF T SL GF N
Sbjct: 579 LNIDPSSMHLAVGSDQGHVSVFNIDGPTLLYQKHIASEISAGIISLQFLTSSLHGFGTNI 638
Query: 412 LVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL------NGQDGLARGANLSN 465
L + TKDSSVL LD + GN L T IHPKKPS+ALFMQ+L +GQ G+ +
Sbjct: 639 LAVGTKDSSVLALDKETGNTLGTGTIHPKKPSKALFMQVLAVLWYTDGQGEPINGSITED 698
Query: 466 VAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTF 525
+++ + E+A KQ ++LLCSEKA YSL HA+QGVKKVLYKKKFHSS+CCWASTF
Sbjct: 699 GLELSERNHIEDATTKQLYILLCSEKALYVYSLVHAIQGVKKVLYKKKFHSSTCCWASTF 758
Query: 526 YSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELI 585
S SDVGL+L+FTSGK E+RSLPEL L+ ETSIRGF Y PK S S + +C S G+L+
Sbjct: 759 CSPSDVGLILIFTSGKVELRSLPELYLIVETSIRGFNYSPPKLKSFSYSQICCSSKGDLV 818
Query: 586 MVNGNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVL 645
+VNG QE F +S L QR+ FR LDS +Y + L QE +V + ++ EKKKGIF SV+
Sbjct: 819 LVNGGQEIFVVSLLVQRNIFRLLDSISCIYRKEMKLSQEELVPSPVIHKEKKKGIFSSVI 878
Query: 646 K---GNKTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDID 702
K G+K K AP +E E+T E I EL+ IFS NF CD++N NL ++EDE LNIDDID
Sbjct: 879 KDFTGSKEKHAPILETEDTKESILELSAIFSNENFPCDADNNDNLTVDEDEIELNIDDID 938
Query: 703 LDGIREKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQI 762
LD EK K+QS+L +NK+ L+ K Q KG+ K+MKG +K + KE+QQDE+ G+VDQI
Sbjct: 939 LDDHEEKRKDQSILGALNKKKLTGKFQVLKGRLKEMKGNIQKTSSKEKQQDEQAGSVDQI 998
Query: 763 KKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822
KKKYGFS S E SVAK+AESKL EN KKLQGINL+TTEMQD A+SFS++A +VL AE +
Sbjct: 999 KKKYGFSSSNETSVAKLAESKLQENMKKLQGINLRTTEMQDKAKSFSTLANQVLWTAEQE 1058
Query: 823 KKS 825
+++
Sbjct: 1059 RRN 1061
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456949|ref|XP_004146211.1| PREDICTED: uncharacterized protein LOC101213055 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/848 (59%), Positives = 618/848 (72%), Gaps = 37/848 (4%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTE---ECGTQI 58
GGN + S Y E K+VTSACWACP+GSKVAVGYSNG++LIW + N K E E +
Sbjct: 218 GGNSMLSPYQEAKKVTSACWACPLGSKVAVGYSNGDVLIWAILHGHNPKAESLAENSNRT 277
Query: 59 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 118
P+ KLNLGYKLDK+PI+SL+ Y D KASRLY+MGA+ N LQ++LLNEQ ESR
Sbjct: 278 GPLFKLNLGYKLDKVPIASLRCNYVDAKASRLYVMGAAS----NSLQVILLNEQIESRMI 333
Query: 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY-QSRSP 177
KL L LSEP IDMEIISSSSD NK K D LLLGKSG Y +DDC IE+YLLQ QSRS
Sbjct: 334 KLGLQLSEPSIDMEIISSSSDHNKNKHDYLLLLGKSGCVYTYDDCSIEKYLLQQSQSRSA 393
Query: 178 PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ 237
S PKE MLK+PF+DS IT T S ++DEDY K +P L E+K KD +
Sbjct: 394 NSLPKEAMLKIPFIDSHITVASFFTNISCSPYASDEDYIQRTKDIPSLFLSESKSKDVTY 453
Query: 238 -------SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 290
SKV+NL+I+GH+DG+INFWD SCP+F+ I SL+QQSE DFSLSGIP+TAL+
Sbjct: 454 LDTVQFGGFSKVENLYISGHNDGSINFWDASCPIFIPIYSLQQQSEDDFSLSGIPVTALH 513
Query: 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSI 349
+DG+S++LVSGD SGMVR+FK + EP+A +NSF+ F GS KK NSHII SVK++K++GSI
Sbjct: 514 FDGSSQILVSGDHSGMVRVFKFRPEPYATDNSFMPFQGSTKKRNSHIIQSVKLVKVDGSI 573
Query: 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409
+++N++ S HLAVGSD+GYV L +GP ++YQK I S+IS+GI+SLQFE+CSLQGF+K
Sbjct: 574 LAINISPRSNHLAVGSDRGYVSLFSIQGPDLIYQKRITSEISTGIISLQFESCSLQGFDK 633
Query: 410 NFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGM 469
N L+I+TKDSS+L LD + GN LS +++HPKKPSRALFMQIL GQD RG+ +SN +
Sbjct: 634 NVLMISTKDSSILALDGETGNPLSASMVHPKKPSRALFMQILYGQDSSTRGSVISNDLEL 693
Query: 470 NKGS-PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSG 528
KGS P ++VPKQ VLLCSEKAA +S HA+QGVKKVLYKKKFH S+CCWASTFYS
Sbjct: 694 GKGSNPAVDSVPKQSLVLLCSEKAAYIFSFVHAIQGVKKVLYKKKFH-STCCWASTFYSN 752
Query: 529 SDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588
+DVGL+L+F++GK EIRSLPELSLLKETS+RGF Y PK NSL +++CSS DGEL+MVN
Sbjct: 753 TDVGLLLVFSTGKIEIRSLPELSLLKETSVRGFKYSPPKVNSLPESIICSSKDGELLMVN 812
Query: 589 GNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLK-- 646
G+QE F +S L + FR LDS +Y D L QE + EKKKGIF SV +
Sbjct: 813 GDQEIFIVSVLCHKKIFRILDSVSHIYRKDYMLSQE----VTTAHKEKKKGIFTSVFQEI 868
Query: 647 -GNKTKQAPDVEREETWEIIEELATIFSTANFQCD---SENTVNLDLEEDEDLLNIDDID 702
GNK KQAPDVE E+T E IEEL+ I S++NF D + + L ED+ L+IDDID
Sbjct: 869 AGNKAKQAPDVEIEDTRESIEELSIILSSSNFHGDFKTVDGSEKLVANEDKLALDIDDID 928
Query: 703 LDGIREKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQ-----DEKTG 757
L+ EKPKEQSML +NKQ L+S +FKGK KQMK KN+ KEEQ D K G
Sbjct: 929 LEDPVEKPKEQSMLGSLNKQKLASTFNSFKGKLKQMK----KNSGKEEQPDWNAGDNKVG 984
Query: 758 AVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLR 817
AVDQIKKKYGFS SVAKM E KL EN KLQGINL+ T+M+DTA+SFSSMA ++LR
Sbjct: 985 AVDQIKKKYGFSSQDTTSVAKMTERKLQENVTKLQGINLRATDMKDTAKSFSSMANQLLR 1044
Query: 818 IAEHDKKS 825
AEH KS
Sbjct: 1045 TAEHGNKS 1052
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449495115|ref|XP_004159738.1| PREDICTED: uncharacterized protein LOC101230863 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/849 (59%), Positives = 620/849 (73%), Gaps = 38/849 (4%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTE---ECGTQI 58
GGN + S Y E K+VTSACWACP+GSKVAVGYSNG++LIW + N K E E +
Sbjct: 218 GGNSMISPYQEAKKVTSACWACPLGSKVAVGYSNGDVLIWAILHGHNPKAESLAENSNRT 277
Query: 59 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 118
P+ KLNLGYKLDK+PI+SL+ Y D KASRLY+MGA+ N LQ++LLNEQ ESR
Sbjct: 278 GPLFKLNLGYKLDKVPIASLRCNYVDAKASRLYVMGAAS----NSLQVILLNEQIESRMI 333
Query: 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY-QSRSP 177
KL L LSEP IDMEIISSSSD NK K D LLLGKSG Y +DDC IE+YLLQ QSRS
Sbjct: 334 KLGLQLSEPSIDMEIISSSSDHNKNKHDYLLLLGKSGCVYTYDDCLIEKYLLQQSQSRSA 393
Query: 178 PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ 237
S PKE MLK+PF+DS IT T S ++DEDY K +P L E+K KD +
Sbjct: 394 NSLPKEAMLKIPFIDSHITVASFFTNISCSPYASDEDYIQRTKDIPSLFLSESKSKDVTY 453
Query: 238 -------SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 290
SKV+NL+I+GH+DG+INFWD SCP+F+ I SL+QQSE DFSLSGIP+TAL+
Sbjct: 454 LDTVQFGGFSKVENLYISGHNDGSINFWDASCPIFIPIYSLQQQSEDDFSLSGIPVTALH 513
Query: 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSI 349
+DG+S++LVSGD SGMVR+FK + EP+A +NSF+ F GS KK NSHII SVK++K++GSI
Sbjct: 514 FDGSSQILVSGDHSGMVRVFKFRPEPYATDNSFMPFQGSTKKRNSHIIQSVKLVKVDGSI 573
Query: 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409
+++N++ S HLAVGSD+GYV L +GP ++YQK I S+IS+GI+SLQFE+CSLQGF+K
Sbjct: 574 LAINISPRSNHLAVGSDRGYVSLFSIQGPDLIYQKRITSEISTGIISLQFESCSLQGFDK 633
Query: 410 NFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGM 469
N L+I+TKDSS+L LD + GN LS +++HPKKPSRALFMQIL GQD RG+ +SN +
Sbjct: 634 NVLMISTKDSSILALDGETGNPLSASMVHPKKPSRALFMQILYGQDSSTRGSVISNDLEL 693
Query: 470 NKGS-PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSG 528
KGS P ++VP+Q VLLCSEKAA +S HA+QGVKKVLYKKKFH S+CCWASTFYS
Sbjct: 694 GKGSNPAVDSVPRQSLVLLCSEKAAYIFSFVHAIQGVKKVLYKKKFH-STCCWASTFYSN 752
Query: 529 SDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588
+DVGL+L+F++GK EIRSLPELSLLKETS+RGF Y PK NSL +++CSS DGEL+MVN
Sbjct: 753 TDVGLLLVFSTGKIEIRSLPELSLLKETSVRGFKYSPPKVNSLPESIICSSKDGELLMVN 812
Query: 589 GNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLK-- 646
G+QE F +S L + FR LDS +Y D L QE + EKKKGIF SV +
Sbjct: 813 GDQEIFIVSVLCHKKIFRILDSVSHIYRKDYMLSQE----VTTAHKEKKKGIFTSVFQEI 868
Query: 647 -GNKTKQAPDVEREETWEIIEELATIFSTANFQCD---SENTVNLDLEEDEDLLNIDDID 702
GNK KQAPDVE E+T E IEEL+ I S++NF D + + L ED+ L+IDDID
Sbjct: 869 AGNKAKQAPDVEIEDTRESIEELSVILSSSNFHGDFKTVDGSEKLVANEDKLALDIDDID 928
Query: 703 LDGIREKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQ-----DEKTG 757
L+ EKPKEQSML +NKQ L+S +FKGK KQMK KN+ KEEQ D K G
Sbjct: 929 LEDPVEKPKEQSMLGSLNKQKLASTFNSFKGKLKQMK----KNSGKEEQPDWNAGDNKVG 984
Query: 758 AVDQIKKKYGFSHSGE-PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVL 816
AVDQIKKKYGFS + + SVAKM E KL EN KLQGINL+ T+M+DTA+SFSSMA ++L
Sbjct: 985 AVDQIKKKYGFSSASDTTSVAKMTERKLQENVTKLQGINLRATDMKDTAKSFSSMANQLL 1044
Query: 817 RIAEHDKKS 825
R AEH KS
Sbjct: 1045 RTAEHGNKS 1053
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484159|ref|XP_003612366.1| Syntaxin-binding protein [Medicago truncatula] gi|355513701|gb|AES95324.1| Syntaxin-binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/853 (53%), Positives = 600/853 (70%), Gaps = 40/853 (4%)
Query: 2 GGNVLQSVYH-ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSIL--NLKTEECGTQI 58
GGNV Q H E K+V+ ACW CP GSKV VGY+NGE+ IW +PS+ N T+
Sbjct: 283 GGNVSQQPLHNEAKKVSCACWVCPFGSKVVVGYNNGELFIWSIPSLTTGNNSASYYSTKN 342
Query: 59 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 118
P+ K NLGYK +KI I S+KW+YA+GKASRLY+MGAS +Q+VLLN+ TE+RT
Sbjct: 343 IPMFKFNLGYKSEKICIGSVKWIYAEGKASRLYVMGAS-----KSMQVVLLNDHTETRTI 397
Query: 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPP 178
KL L LSE C+DMEIIS++++ +K KQ+S +LLGKSG Y +DD IE+YLLQ QS+S P
Sbjct: 398 KLGLYLSECCVDMEIISTTNEQSKHKQNSLILLGKSGRVYQYDDSLIEKYLLQGQSKSTP 457
Query: 179 SAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ- 237
S PKEVM+++P DS IT K I+ + + +ADE YS + KS P L+ ET KDG
Sbjct: 458 SLPKEVMVRLPLTDSGITISKFISNTTDVFYAADEYYSQMIKSYPQLIPIETNHKDGLNL 517
Query: 238 ------SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291
S +KNL+ITGH +GAI FWD SCP F+ +L LKQQSE D SLSG+PLT LY+
Sbjct: 518 SSANFTGFSNIKNLYITGHHNGAITFWDASCPFFIPVLQLKQQSENDQSLSGVPLTELYF 577
Query: 292 DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG----SKKGNSHIIHSVKVMKING 347
D S +LVSGDQSGMVRIF+ K EP+A NSF+S TG +G ++I SVK++K G
Sbjct: 578 DIKSLLLVSGDQSGMVRIFRFKPEPYA-SNSFMSLTGILRFGFRGTKNVIQSVKLVKTIG 636
Query: 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407
++I +N++ +++HL VGSDQG V +++ +GP++LYQKHIAS+IS GI+ LQF TCS+ GF
Sbjct: 637 AVICMNIDHSTRHLGVGSDQGNVSVINIDGPSLLYQKHIASEISVGIIYLQFITCSVYGF 696
Query: 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNL--IHPKKPSRALFMQILNGQ-DGLARGANLS 464
KN LV+ TKDSSVLVLDS+ GN L+T + PK PS+ALFMQIL+GQ + + R
Sbjct: 697 AKNILVVGTKDSSVLVLDSETGNTLTTGTGAVRPKNPSKALFMQILDGQCEPITRSVRKD 756
Query: 465 NVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWAST 524
++ + +G+ ++ K ++LLCSEKA YS +A+ G+KKVLYKKKF SSCCWAST
Sbjct: 757 SL-DLREGNHVDSVTTKNLYILLCSEKALYIYSFEYALLGIKKVLYKKKFFPSSCCWAST 815
Query: 525 FYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGEL 584
FYS SD+GL+LLFT+GK E+RSLPELSL+ +TSIRGF Y PK S S++ +C S G+L
Sbjct: 816 FYSASDIGLVLLFTTGKVELRSLPELSLIVKTSIRGFTYSPPKLKSFSDSQICCSSRGDL 875
Query: 585 IMVNGNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKK------- 637
++VNG+QE F S L QR+ FR LDS ++Y + L Q +V ++ EKK
Sbjct: 876 VLVNGDQEIFVFSLLAQRNIFRLLDSVGRIYRKERMLSQAELVPNPVIYKEKKDLFNLVY 935
Query: 638 -KGIFGSVLK---GNKTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDE 693
+ IF SV+K G K K P +E+E+ E IEEL+ IFS ANF D+ NTV +E +
Sbjct: 936 RQSIFNSVIKDFTGGKEKHIPLMEKEDPKESIEELSAIFSRANFSMDANNTV----DEKQ 991
Query: 694 DLLNIDDIDLDGIREKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQD 753
L +DDIDL+ +E KEQS+L +NK+ L+ K QA KGK ++MKG N+K + KEEQQD
Sbjct: 992 PELTLDDIDLEDHKEIRKEQSILGALNKKKLAGKFQALKGKVREMKGNNQKASDKEEQQD 1051
Query: 754 EKTGAVDQIKKKYGF-SHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMA 812
EK GAV+QIKK+YGF S S E VAK+AESKL EN++KLQG+ L+T EM++TA+SF SMA
Sbjct: 1052 EKAGAVNQIKKRYGFSSSSNETRVAKLAESKLRENTRKLQGVELRTAEMENTAKSFLSMA 1111
Query: 813 KEVLRIAEHDKKS 825
K+VL+ AE DK+S
Sbjct: 1112 KQVLQNAEQDKRS 1124
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084111|ref|XP_002307215.1| predicted protein [Populus trichocarpa] gi|222856664|gb|EEE94211.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/839 (55%), Positives = 583/839 (69%), Gaps = 74/839 (8%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTE---ECGTQI 58
GG +LQS +HE K+VTSACWACP SKVAVGYSNGEI IW +P+I N +TE + TQ
Sbjct: 112 GGGLLQSQHHEMKKVTSACWACPFASKVAVGYSNGEIFIWSIPAITNSRTELNLDRATQN 171
Query: 59 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 118
PI KLNLGYK+DKIPI+ LKW+YADGKASRLY+MGASD S N LQ+VLLNE E+R
Sbjct: 172 APILKLNLGYKVDKIPIALLKWLYADGKASRLYVMGASDLASTNNLQVVLLNEHIETRMI 231
Query: 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPP 178
KL L L EPCID+EIISSS D +K KQD +++GKSGH Y +DDC IE+YLLQ QS+ P
Sbjct: 232 KLGLYLPEPCIDIEIISSSFDQSKHKQDILVVIGKSGHIYVYDDCLIEKYLLQSQSKISP 291
Query: 179 SAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS 238
S PKEVM+KMPF DSSIT K IT +L+ DEDY LAK++P FE + KDG+ S
Sbjct: 292 SLPKEVMVKMPFADSSITVAKFITNTPNLLTYGDEDYIRLAKNIPSPFPFEPRPKDGTHS 351
Query: 239 -----HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293
+KVKNL+ITGHSDGAINFWDVSCP + +LSLKQQ
Sbjct: 352 FQFNGFTKVKNLYITGHSDGAINFWDVSCPFPIPMLSLKQQ------------------- 392
Query: 294 TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN 353
VRIFK K EP+A ENSF+SF GS K S+ +HSVK+MK+NGS++S+N
Sbjct: 393 -------------VRIFKFKPEPYA-ENSFMSFQGSLKKGSNYVHSVKLMKVNGSVLSIN 438
Query: 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413
++ + HLAVGSDQGYV + D EGPT+LYQ+HIAS+IS+GI+SLQF+TC L GFEKN LV
Sbjct: 439 ISPSLVHLAVGSDQGYVSVFDIEGPTLLYQEHIASEISTGIISLQFDTCFLHGFEKNILV 498
Query: 414 IATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473
+ATKDSSVL LD+D GN+LS++ +HPKKP RALFMQIL+GQD LARG+ +SN +K
Sbjct: 499 VATKDSSVLALDADTGNLLSSSSVHPKKPYRALFMQILDGQDMLARGSKMSNNQDPSKRK 558
Query: 474 PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGL 533
E+ PKQ +L+CSEKA YSL+H QG+KKVLYKKKF SSSCCWASTF SD GL
Sbjct: 559 SDEDG-PKQSSLLICSEKAVYVYSLNHVAQGIKKVLYKKKFQSSSCCWASTFCGASDAGL 617
Query: 534 MLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMC----SSWDGELIMVNG 589
LL ++GK EIR++ + + + R ++ T L M ++ G + V
Sbjct: 618 ALLLSTGKIEIRAVVDKRIFNQ---RFHIFCTKAELFLCQIDMLFMGWGTYYGNVYRVCV 674
Query: 590 NQEAFFISALRQR-DFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGN 648
+ S+L++R D F S + Y P K+K V+KG+
Sbjct: 675 VSKGKLQSSLQKRTDVFTRRASH---WIYHP--------------KGKEK-----VMKGS 712
Query: 649 KTKQAPDVEREETWEIIEELATIFSTANFQC-DSENTVNLDLEEDEDLLNIDDIDLDGIR 707
K KQ P+VE E+T E IEEL+ IFST NF+C EN ++ +++D L+IDDIDLD
Sbjct: 713 KPKQVPEVETEDTRESIEELSKIFSTVNFECHHDENKDSMAMDDDGIDLDIDDIDLDDPV 772
Query: 708 EKPKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYG 767
EK K+Q++LA +NK+ L+SK QAF G+ KQM KNEK N+KEE +DEKTGAVDQIKKKYG
Sbjct: 773 EKTKDQNLLAALNKKKLASKFQAFTGRIKQMNVKNEK-NIKEEVKDEKTGAVDQIKKKYG 831
Query: 768 FSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKKSS 826
FS SGE S AK+A++KLHEN +KLQGINL+ TEMQ+TA SFS+MAKEVLRI+E DK+SS
Sbjct: 832 FSLSGESSAAKIAQNKLHENIRKLQGINLRATEMQETASSFSAMAKEVLRISEKDKQSS 890
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538385|ref|XP_003537684.1| PREDICTED: uncharacterized protein LOC100782049 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/745 (56%), Positives = 543/745 (72%), Gaps = 18/745 (2%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSIL--NLKTEECGTQIT 59
GG +LQ+ Y+ET++V+SACW CP GSKV VGY+NGE+ IW +PS+ N + +Q T
Sbjct: 220 GGKILQTRYNETRKVSSACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLATDYNSQNT 279
Query: 60 PICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTK 119
P+ K NLGYK DK I S+KW+YA+GKASRLY+MG SD+ NLLQ+VLLNE TESRT K
Sbjct: 280 PMFKFNLGYKSDKTSIGSVKWIYAEGKASRLYVMGGSDYAPSNLLQVVLLNEHTESRTIK 339
Query: 120 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 179
+ L L E CIDMEIIS+SS K +Q+ F+LLGKSGH Y +DD IERYLLQ QS+S PS
Sbjct: 340 MGLHLPEGCIDMEIISTSS---KHRQNYFILLGKSGHVYLYDDNLIERYLLQSQSKSSPS 396
Query: 180 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDG---S 236
PKEV++K+P DS+IT K I+ NS SS DE Y+ L K+ PPL+ ET LKDG S
Sbjct: 397 LPKEVVVKLPLADSNITTAKFISNNSNFFSSEDEYYNQLVKNYPPLVPIETNLKDGINFS 456
Query: 237 QSH----SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 292
S+ S ++N++ITGHS+GAINFWD +CP F IL LKQQSE DFSLSGIPLT LY+D
Sbjct: 457 SSNFTGFSNIRNMYITGHSNGAINFWDATCPFFTPILQLKQQSENDFSLSGIPLTELYFD 516
Query: 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG-SKKGNSHIIHSVKVMKINGSIIS 351
S +L SGDQSGMVRI++ K EP+A NSF+S TG +KKG H+IHS+K++K +G++I
Sbjct: 517 SNSPLLFSGDQSGMVRIYRFKPEPYA-SNSFMSLTGGTKKGTDHVIHSMKLIKTSGTVIC 575
Query: 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411
+N++ +S+HLAVGSDQG V +++ +GP++LY+KHIAS+IS+GI+SLQF+TCSL GFEKN
Sbjct: 576 MNIDHSSRHLAVGSDQGNVSVINIDGPSLLYRKHIASEISTGIISLQFKTCSLHGFEKNI 635
Query: 412 LVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNK 471
L + TKDSSVL LD + GN LS IHPKKPS+A+FMQ+L+GQ G+ + + +
Sbjct: 636 LAVGTKDSSVLTLDGETGNTLSIGTIHPKKPSKAIFMQVLDGQGEQTAGSVTKDGLELKE 695
Query: 472 GSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDV 531
G E+A KQ ++LLCSEKA YS +HAVQGVKKVLYKKKFHSSSCCWAST S SD+
Sbjct: 696 GIHIEDATAKQLYILLCSEKALYVYSFAHAVQGVKKVLYKKKFHSSSCCWASTINSLSDI 755
Query: 532 GLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQ 591
L+LLF SGK E+RS PEL+L+ ETS+RGF Y PK S S++ +C S G+L++VNG+Q
Sbjct: 756 RLILLFASGKVELRSFPELTLIVETSVRGFTYSPPKLKSFSDSQICCSSKGDLVLVNGDQ 815
Query: 592 EAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLK---GN 648
E F +S L QR+ FR LDS +Y + QE +V ++ EKK+GIF SV+K +
Sbjct: 816 EIFVVSLLAQRNIFRLLDSVSCIYRKERMPSQEELVPGPVIHKEKKRGIFSSVIKDFTSS 875
Query: 649 KTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIRE 708
K K AP +E+++ E I EL+ IFS ANF C+ +N ++E++ LNIDDIDL+ E
Sbjct: 876 KEKHAPLLEKKDPKESIRELSAIFSNANFACN-DNVDKPTMDENQLELNIDDIDLEDHVE 934
Query: 709 KPKEQSMLAVMNKQILSSKLQAFKG 733
K KEQS+L +NK+ L+ Q+ KG
Sbjct: 935 KRKEQSILGALNKKKLAGTFQSLKG 959
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353594|ref|NP_195281.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|110737638|dbj|BAF00759.1| hypothetical protein [Arabidopsis thaliana] gi|332661130|gb|AEE86530.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 54/848 (6%)
Query: 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITP-ICKLNLG 67
V +TK+ T ACW CP GS+V+VGYSNG+ILIW +PS EC + + ICKLNLG
Sbjct: 224 VKQDTKKATCACWVCPSGSRVSVGYSNGDILIWSIPS-----KGECSPESSAMICKLNLG 278
Query: 68 YKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEP 127
YK +KIPI+SLKWVYA+GKASR+Y++G+S N LQ+VLLNEQTE+R KL L +SEP
Sbjct: 279 YKSEKIPIASLKWVYAEGKASRVYVIGSSS----NSLQVVLLNEQTETRMIKLGLHVSEP 334
Query: 128 CIDME-IISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVML 186
C DME II+ ++ +K KQD +LGKSG YA+DD IE+YL+Q QS+S PS PKE ++
Sbjct: 335 CADMEMIIADVNEQSKHKQDFLFVLGKSGRVYAYDDYMIEKYLIQSQSKSSPSLPKETVV 394
Query: 187 KMPFLDSS-ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-----HS 240
K+PF DSS IT K +T S +L+ +DEDY+ LAK P L F T K+ S+S +
Sbjct: 395 KLPFSDSSSITVGKFLTNPSHLLNLSDEDYAQLAKDAVPFLPFHTVPKESSRSAHFPGFT 454
Query: 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLV 299
KVKN++ITGH DG I+ WD++C +L+L LK+Q ++D S G LTAL+YD SR+LV
Sbjct: 455 KVKNVYITGHCDGTISVWDMTCSFPILVLFLKEQIDQDVSSRGNAALTALHYDSNSRLLV 514
Query: 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNRNS 358
SGD +GMVR+++ K EP+ ENSF+ F GS KKGN+HI+ SVK +K+ GSI + ++NS
Sbjct: 515 SGDHNGMVRLYRFKPEPYLTENSFIPFQGSLKKGNNHIVQSVKYIKLTGSITCIQKSQNS 574
Query: 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418
+HLA+GSDQG+V L+D E VLY KHIASDI GI+SLQFE+C +QGFEKN LV+A +D
Sbjct: 575 KHLAIGSDQGHVSLVDIEEANVLYTKHIASDICPGIISLQFESCIVQGFEKNVLVVAMRD 634
Query: 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNG-QDGLARGANLSNVAGMNKGSPKEN 477
SSV LDSD GNM+ TN+I PKKP + L+MQIL+G QD G + S + S E
Sbjct: 635 SSVFALDSDTGNMIGTNMIKPKKPFKVLYMQILDGKQDTSGNGFDTS------RESTVEE 688
Query: 478 AVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF 537
+Q VL+CSEKA YSL+H VQGVKKVL+KKKF SS C ASTFY S VGL L+F
Sbjct: 689 ISIRQPSVLVCSEKAIYIYSLAHVVQGVKKVLHKKKFSSSPICSASTFYGTSGVGLTLVF 748
Query: 538 TSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFIS 597
T G EIRSLPELS LK+TSIRGF Y +PKPNSL + +SWDG+L+MVNG+ E S
Sbjct: 749 TDGTVEIRSLPELSQLKQTSIRGFTYSSPKPNSLPEITISASWDGDLVMVNGDDELIVSS 808
Query: 598 ALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGNKTKQAPDVE 657
L Q++ FR ++S +VY D ++ EG++++S +KK +FGSV K K+K+ D E
Sbjct: 809 VLPQKETFRLVESMNRVYKKDNSVCHEGIITSS--SPREKKSMFGSVFK-TKSKRTTDTE 865
Query: 658 REETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDI---------DLDGIRE 708
E + E IEEL+ IFSTANF N ++E ++ I + D+D
Sbjct: 866 PESSKETIEELSKIFSTANFPW------NNNVENSREINTITRVEDEEELDIDDIDIDDH 919
Query: 709 KPK--------EQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNM-KEEQQDEKTGA- 758
P EQ +L+ ++KQ ++++ FKGK KQM KNEK+ + +E+ +EK GA
Sbjct: 920 HPNQQQQEKPKEQGILSGLSKQKMANRFSNFKGKLKQMAAKNEKSVVTNDEKHEEKNGAT 979
Query: 759 VDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRI 818
VDQIKKKYGF+ S E AKMA+SKL +N KKLQGI+L+TTEM+DTA+SFSS AKE+L
Sbjct: 980 VDQIKKKYGFTSSDEMGAAKMAQSKLQDNLKKLQGISLRTTEMEDTAKSFSSTAKELLNA 1039
Query: 819 AEHDKKSS 826
E +K+SS
Sbjct: 1040 VEFNKQSS 1047
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 826 | ||||||
| TAIR|locus:2169672 | 1124 | AT5G05570 "AT5G05570" [Arabido | 0.507 | 0.372 | 0.244 | 3.1e-33 |
| TAIR|locus:2169672 AT5G05570 "AT5G05570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 115/470 (24%), Positives = 203/470 (43%)
Query: 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLN 65
L ++ + K+++S CWA GS +AVGY +G+IL W + + G + KL
Sbjct: 248 LSNLELDGKEISSLCWASTDGSVLAVGYVDGDILFW------DFSDGQKGKPSNHVVKLQ 301
Query: 66 LGYKLDKIPISSLKW---VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLA- 121
L ++P+ + W V +L+I G S +L ++ L+ + K
Sbjct: 302 LSSAEKRLPVIVMHWCLDVSRKSSGGKLFIYGGDIIGSDEVLTMLGLDWSSGMGGLKCVG 361
Query: 122 ---LPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPP 178
L LS DM ++S + + FLL G A+DD + + Q +++
Sbjct: 362 RADLTLSGSFADM-VLSPIASSRQSGVFLFLLTNP-GQLQAYDDTSLASLMSQKENKISV 419
Query: 179 SAPKEVMLKMPFLDSSITAMKLITGN-SFILSSADEDYSLLAKSVPPLL----DFETKLK 233
S P + +P +D +T N + S A + L AK+ P + L
Sbjct: 420 S-PLPYPMVVPTMDPHMTVATFSALNVNDKTSLALSEIVLAAKARTPRTPSGESAQWPLT 478
Query: 234 DGSQSHS---KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIP--LTA 288
G SH K++ L++ G+ DG++ WD + P LI L+ ++ ++G+ +TA
Sbjct: 479 GGVPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEPKASV-IDITGVDASVTA 537
Query: 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS 348
+ + L G++ GMVR++KL H + T ++K I+ ++ +
Sbjct: 538 FCFCSKTSCLAVGNECGMVRLYKLV--GHTSGGTLEVVTNTEKKGLAIVTTLTLW----- 590
Query: 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408
I ++ H AVGS +L +GP L S +SS + +LQF +Q
Sbjct: 591 -ICYALS----H-AVGSLLVAHHLHQEDGPQWLAA---FSFLSSPVCTLQF----VQSTR 637
Query: 409 KNFLVIATKDSSVLVLDSDNGNMLS-TNLIHPK-KPSRALFMQILNGQDG 456
+ L + K V VLD ++L TN + P ++L+++ + G
Sbjct: 638 R--LAVGFKCGKVAVLDIGVPSVLFVTNSLSDSGSPIKSLYVKSSSAPTG 685
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00008727001 | SubName- Full=Chromosome chr4 scaffold_205, whole genome shotgun sequence; (1054 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 826 | |||
| pfam08596 | 393 | pfam08596, Lgl_C, Lethal giant larvae(Lgl) like, C | 4e-04 |
| >gnl|CDD|219923 pfam08596, Lgl_C, Lethal giant larvae(Lgl) like, C-terminal | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 74/375 (19%), Positives = 129/375 (34%), Gaps = 66/375 (17%)
Query: 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFK--------LKYEPHAIENSFLSFTGSKKGNS 334
+ +T++ + G + L +G V +FK K + ++ SF F S NS
Sbjct: 1 NVAVTSVSFAGETLELAVALSTGEVVVFKFGKNKNFGNKEKSGGLDMSFRRFQLS---NS 57
Query: 335 H-----IIHSVK-----------VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378
I ++ +S N N +A+G + G + ++D GP
Sbjct: 58 KEKLVDISDRAPPTLKQGFLPVTLVNAKQGPVSALKNSNIGFVAIGYEDGSLVIIDRRGP 117
Query: 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNMLSTN 435
++Y ++I+ SG S T E F ++ SS+L+ N L+T
Sbjct: 118 AIIYNENISEHFLSGESSSYVTT-----IE--FSIMEYGGDGYSSILLFVGTNRGELATF 170
Query: 436 LIHPKKPSR--ALFMQI-------------LNGQDGLARGANLSNVAGMNKGSPKENAVP 480
I P R F +N + G + A +S + G+ KG +
Sbjct: 171 KILPNSGGRFVVQFADATTTDDSKILKIIPINKETGSSALATISKMQGLGKG------LV 224
Query: 481 KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSG 540
FV+ S + + K S T + L+ LF +G
Sbjct: 225 IPGFVVATSVSDIRVFKPGKSKGTHKSF--DYPILCSGASVVPTNQRKHGIVLVALFING 282
Query: 541 KFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALR 600
++ SLP L +K+ + LS + + + G++ + G EA IS
Sbjct: 283 SIKVYSLPSLKEIKKMKL----PFPIDARYLSESSILRN--GDIFIRTGPTEAALISVFG 336
Query: 601 QRDFFRFLDSACQVY 615
L +Y
Sbjct: 337 SSSTGAELPPTDLLY 351
|
The Lethal giant larvae (Lgl) tumour suppressor family is conserved from yeast to mammals. The Lgl family functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface. The N-terminal half of Lgl members contains WD40 repeats (see pfam00400), while the C-terminal half appears specific to the family. Length = 393 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 826 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.9 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.9 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.87 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.85 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.83 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.83 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.83 | |
| PTZ00420 | 568 | coronin; Provisional | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.83 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.82 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.82 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.82 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.81 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.8 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.79 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.79 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.79 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.79 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.79 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.78 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.78 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.78 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.78 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.77 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.77 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.76 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.76 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.76 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.76 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.76 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.76 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.75 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.75 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.75 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.73 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.72 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.71 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.7 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.66 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.65 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.64 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.64 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.64 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.63 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.59 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.59 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.58 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.56 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.54 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.54 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.54 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.53 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.52 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.51 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.51 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.51 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.5 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.5 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.46 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.46 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.44 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.43 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.41 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.4 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.39 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.39 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.37 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.35 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.35 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.34 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.34 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.33 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.33 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.31 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.3 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.3 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.26 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.24 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.23 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.23 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.21 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.17 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.15 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.12 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.07 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.06 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.05 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.05 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.03 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.0 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.99 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.96 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.91 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.91 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.86 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.82 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.8 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.79 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.71 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.7 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.66 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.65 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.65 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.61 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.6 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.59 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.58 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.57 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.54 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.52 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.51 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.5 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.48 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.47 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.45 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.43 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.42 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.21 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.13 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.11 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.09 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.08 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.05 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.04 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.03 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.03 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.0 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.97 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.96 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.95 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.89 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.88 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.87 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.82 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.8 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.77 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.76 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.75 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.6 | |
| PF00957 | 89 | Synaptobrevin: Synaptobrevin; InterPro: IPR001388 | 97.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.59 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.56 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.56 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.54 | |
| KOG0860 | 116 | consensus Synaptobrevin/VAMP-like protein [Intrace | 97.54 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.51 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.49 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.47 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.44 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.43 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.36 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.27 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.26 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.26 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.21 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.19 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.16 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.15 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.15 | |
| PF08366 | 105 | LLGL: LLGL2; InterPro: IPR013577 This domain is fo | 97.12 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.0 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.97 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.82 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.76 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.72 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.64 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.61 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.52 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.42 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.37 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.01 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.93 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.81 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.81 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.8 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.74 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.72 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.29 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.19 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.04 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.86 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.43 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.88 | |
| KOG0859 | 217 | consensus Synaptobrevin/VAMP-like protein [Intrace | 93.86 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.11 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.79 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.55 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.19 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.18 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.0 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 90.65 | |
| PF10979 | 43 | DUF2786: Protein of unknown function (DUF2786); In | 90.33 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.32 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 90.18 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 89.64 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 89.48 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.76 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.14 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 87.96 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 87.92 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 87.46 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 87.32 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.87 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 86.81 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 86.65 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 86.35 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.35 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 86.34 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 86.18 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 85.82 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.8 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 85.16 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 85.09 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.5 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 84.02 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.95 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.38 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.11 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.48 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 82.17 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 82.03 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 81.81 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 81.02 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 81.01 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 80.91 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 80.48 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=272.36 Aligned_cols=299 Identities=16% Similarity=0.160 Sum_probs=231.4
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
...|+..|.|+.+ +|+|+.||+|+-|-+++|||+.+..... .-+.|+.-|.+++|.+ +|
T Consensus 111 ~~GH~e~Vl~~~f-sp~g~~l~tGsGD~TvR~WD~~TeTp~~----------------t~KgH~~WVlcvawsP----Dg 169 (480)
T KOG0271|consen 111 IAGHGEAVLSVQF-SPTGSRLVTGSGDTTVRLWDLDTETPLF----------------TCKGHKNWVLCVAWSP----DG 169 (480)
T ss_pred cCCCCCcEEEEEe-cCCCceEEecCCCceEEeeccCCCCcce----------------eecCCccEEEEEEECC----Cc
Confidence 3456779999998 6899999999999999999999852211 1234555677777765 22
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
..+ ..++.+|+|.+||..+
T Consensus 170 k~i---------------------------------------------------------ASG~~dg~I~lwdpkt---- 188 (480)
T KOG0271|consen 170 KKI---------------------------------------------------------ASGSKDGSIRLWDPKT---- 188 (480)
T ss_pred chh---------------------------------------------------------hccccCCeEEEecCCC----
Confidence 222 3345568888998766
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEe-----eCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eCC
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI-----TGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HSK 241 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs-----~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~ 241 (826)
..+.-..++.|...|++++|. |.++.+++++ |+.+++|+...........+|+..|+| ..-
T Consensus 189 ------------g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 189 ------------GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred ------------CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 223344578999999999995 4678899988 999999987665444445899999999 444
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe-----------CCCC--------------
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD-----------GTSR-------------- 296 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs-----------p~~~-------------- 296 (826)
...+|.+|+.|++||+|++..+.+ ...+.+|...|+.|+++ |.++
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred CCceEEecCCCceEEEEEccchhH----------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 456999999999999999943331 12345788888888776 3333
Q ss_pred -----------EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 297 -----------VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 297 -----------~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.|++|+.|.++.+|+-..... + + .+...|..-|..+.||||++++|+++
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----------------p-i---~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----------------P-I---TRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEeccccccc----------------c-h---hhhhchhhheeeEEECCCccEEEEee
Confidence 499999999999999763321 1 1 34455677799999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
-|..|++||-++|+.+.++ .+|-.+|..++|+. |+++|++|+.|.++++|++++.++..-+++|..
T Consensus 387 FDkSVkLW~g~tGk~lasf---RGHv~~VYqvawsa------DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASF---RGHVAAVYQVAWSA------DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred cccceeeeeCCCcchhhhh---hhccceeEEEEecc------CccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 9999999999999988555 48999999999998 799999999999999999998888777665544
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=267.82 Aligned_cols=220 Identities=18% Similarity=0.193 Sum_probs=188.9
Q ss_pred ecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+.+|.+.|.++.|+|. +..+++++ |+++++|.... .++..+ .+|...|.. |+|+|++|+|++.|.+-|+||+.
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 4678888999999998 45788988 99999997665 445555 889988888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.+.. +-.| ++|...|.+++|+|||.++++|+.|..-+|||++++.+. +.
T Consensus 292 tk~E-----lL~Q-----EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i---------------------m~ 340 (459)
T KOG0272|consen 292 TKSE-----LLLQ-----EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI---------------------MF 340 (459)
T ss_pred cchh-----hHhh-----cccccccceeEecCCCceeeccCccchhheeecccCcEE---------------------EE
Confidence 4432 1111 589999999999999999999999999999999966542 55
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
+..|..+|.+++|+|+|..||+|+.|++++|||++....++++. .|..-|+.+.|.|. .+.+|++++.|+++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~-----~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQ-----EGYFLVTASYDNTV 412 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheEeccc-----CCeEEEEcccCcce
Confidence 55688899999999999999999999999999999999987664 89999999999983 48999999999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEE
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQI 450 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~ 450 (826)
+||...++.+++++.+|.. +++++.+
T Consensus 413 kiWs~~~~~~~ksLaGHe~---kV~s~Di 438 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEG---KVISLDI 438 (459)
T ss_pred eeecCCCcccchhhcCCcc---ceEEEEe
Confidence 9999999999999888864 4566544
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=261.66 Aligned_cols=287 Identities=13% Similarity=0.160 Sum_probs=221.5
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee-eCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY-ADGK 86 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~-~~~~ 86 (826)
+...|..=|.|++| +|||+.||+|..||+|++||.+++.+.-. +-..|+.+|+.++|-. +-..
T Consensus 152 t~KgH~~WVlcvaw-sPDgk~iASG~~dg~I~lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAW-SPDGKKIASGSKDGSIRLWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred eecCCccEEEEEEE-CCCcchhhccccCCeEEEecCCCCCcccc---------------cccCcccceeEEeecccccCC
Confidence 33445667899999 68999999999999999999998722111 1235677899999965 1111
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
..+ .+...+.+|.+.+||...
T Consensus 216 ~~r---------------------------------------------------------~las~skDg~vrIWd~~~-- 236 (480)
T KOG0271|consen 216 PCR---------------------------------------------------------RLASSSKDGSVRIWDTKL-- 236 (480)
T ss_pred Ccc---------------------------------------------------------ceecccCCCCEEEEEccC--
Confidence 111 223345567788888765
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-------
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS------- 238 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~------- 238 (826)
....+.+.+|..+|||+++--+| ++.+++ |++|++|+...+.+.....+|...|+.
T Consensus 237 ---------------~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 237 ---------------GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY 300 (480)
T ss_pred ---------------ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh
Confidence 11345678999999999987543 567788 999999976544433333677777644
Q ss_pred ------eCCCCCE-------------------------EEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe
Q 003360 239 ------HSKVKNL-------------------------FITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 239 ------~s~~~~~-------------------------l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
|.+.++. |++|+.|+++.+|+.. ... + .....+|..-|
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--p--------i~rmtgHq~lV 370 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--P--------ITRMTGHQALV 370 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--c--------hhhhhchhhhe
Confidence 4454444 9999999999999982 221 1 22346888999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+.+.|+||++++|+++.|..|++|+-++++.. ..+..|-++|.-++|+.|.++|++|+.
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---------------------asfRGHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---------------------ASFRGHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchh---------------------hhhhhccceeEEEEeccCccEEEEcCC
Confidence 99999999999999999999999999966552 344557889999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
|.+++|||+++.++.+.. .+|...|.++.|+| ||..+++|+.|..+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DL---pGh~DEVf~vDwsp------DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDL---PGHADEVFAVDWSP------DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccC---CCCCceEEEEEecC------CCceeecCCCceEEEeec
Confidence 999999999999887433 38999999999999 799999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=265.31 Aligned_cols=430 Identities=18% Similarity=0.215 Sum_probs=271.9
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|.|++| +|||++||+|. .+.+.+|-.+... .. ...| ..+...+..+-..|+.+.|.. +.++++
T Consensus 96 k~~v~~i~f-SPng~~fav~~-gn~lqiw~~P~~~------~~-~~~p-Fvl~r~~~g~fddi~si~Ws~----DSr~l~ 161 (893)
T KOG0291|consen 96 KRGVGAIKF-SPNGKFFAVGC-GNLLQIWHAPGEI------KN-EFNP-FVLHRTYLGHFDDITSIDWSD----DSRLLV 161 (893)
T ss_pred cCccceEEE-CCCCcEEEEEe-cceeEEEecCcch------hc-ccCc-ceEeeeecCCccceeEEEecc----CCceEE
Confidence 568999999 79999999985 5689999776531 10 1112 122223445567799999986 788999
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch---------
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC--------- 163 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~--------- 163 (826)
.|++|. ...+...+.........+. .....++...+ ..++..+++++.+|.+++|.-.
T Consensus 162 ~gsrD~----s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF--------~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~ 228 (893)
T KOG0291|consen 162 TGSRDL----SARLFGVDGNKNLFTYALN-GHKDYVVACFF--------GANSLDLYTVSKDGALFVWTCDLRPPELDKA 228 (893)
T ss_pred eccccc----eEEEEEeccccccceEecc-CCCcceEEEEe--------ccCcceEEEEecCceEEEEEecCCCcccccc
Confidence 988865 2222222222211111110 11122222111 1223346666777777766322
Q ss_pred ---------------hHH-----------H-HHhhccCC--------------------C---CCCCCccceeeecccCC
Q 003360 164 ---------------QIE-----------R-YLLQYQSR--------------------S---PPSAPKEVMLKMPFLDS 193 (826)
Q Consensus 164 ---------------~i~-----------~-~~~~~~~~--------------------~---~~~~~~~~~~~l~~h~~ 193 (826)
.-+ + ++-+.+.+ . +..+.......+...+.
T Consensus 229 ~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 229 EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 000 0 00000000 0 00011112223445567
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+|..++|+..|.+++.|+ -|.+.+|..+...+..-..+|...+.+ ++|||++||||+.||.|||||......
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC---- 384 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC---- 384 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE----
Confidence 888999999999999988 457999987765555556889999999 999999999999999999999944431
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC------ccccceEEEeecCCC----------C
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH------AIENSFLSFTGSKKG----------N 333 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~------~~~~~~~~i~~s~~~----------~ 333 (826)
..+|..|...|+.+.|+..++.+++++-||+||.||+....+ ..+.++.+++..+.| .
T Consensus 385 ------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 385 ------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred ------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 113567999999999999999999999999999999987632 122233344333323 2
Q ss_pred eEEEEEEEE-------eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccC
Q 003360 334 SHIIHSVKV-------MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 334 ~~~~~~~~~-------~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
...++.++. ..|.+||.+|+|+|++..||+||+|.+||+||+-...-. -+. .+..-+..+.|.|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrP---- 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRP---- 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcC----
Confidence 233444433 357899999999999999999999999999998654211 111 3455789999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEE
Q 003360 406 GFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFV 485 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 485 (826)
||..|++++.||.|.+||...+..+.++.+.......-.....+. -++-+..+....+ ..+.++.++
T Consensus 531 --dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t----------a~~sa~~K~Ftti-~ySaDG~~I 597 (893)
T KOG0291|consen 531 --DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT----------AENSAKGKTFTTI-CYSADGKCI 597 (893)
T ss_pred --CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee----------hhhcccCCceEEE-EEcCCCCEE
Confidence 699999999999999999998777765433222111000000000 0001111222222 356677788
Q ss_pred EEeec-CcEEEEeccc
Q 003360 486 LLCSE-KAACAYSLSH 500 (826)
Q Consensus 486 v~~se-~~irv~sl~~ 500 (826)
+++++ +.|.||+++.
T Consensus 598 lAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPE 613 (893)
T ss_pred EecCCcccEEEEECch
Confidence 88766 5899999985
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=278.14 Aligned_cols=324 Identities=20% Similarity=0.282 Sum_probs=195.8
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc-cc-------------------ceEEEeec-CCC-CeEEEEE-EE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI-EN-------------------SFLSFTGS-KKG-NSHIIHS-VK 341 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~-~~-------------------~~~~i~~s-~~~-~~~~~~~-~~ 341 (826)
.|+.|+|++++..|++|..+|.|.||++..++... .. .+..+..- ..+ +.- +.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g-f~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG-FLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-EEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-cCchhh
Confidence 68999999999999999999999999998774432 00 01111100 000 000 000 11
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-----CCCCCeeEEEEeecccCC--CCCcEEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-----DISSGIVSLQFETCSLQG--FEKNFLVI 414 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-----~~~~~V~sl~f~~~~~~~--~d~~~l~s 414 (826)
.....++|++++.|..| ++|+|+++|.+.|+|+|++.++|...+.. .....|++++|..+...+ +.+.+|++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12227899999999888 89999999999999999999999876654 245679999999875533 34689999
Q ss_pred EECCCcEEEEECC---CCceEEeeeccC-CCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec
Q 003360 415 ATKDSSVLVLDSD---NGNMLSTNLIHP-KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE 490 (826)
Q Consensus 415 gs~Dg~V~iwd~~---tg~~i~~~~~~~-~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se 490 (826)
|++.|.+.+|.+. .|.+...+.... ...+.++.+..++.+++.++.++...+++++.+..++ +++++|++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~------g~vVvvSe 234 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP------GYVVVVSE 234 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----------EEEEEE-S
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC------cEEEEEcc
Confidence 9999999888654 355666665444 5678899999999888888888888888888888776 89999999
Q ss_pred CcEEEEeccccccccceeeeeeecCCCCceeeEeee----eCCceEEEEEEeeceEEEeccCCccccccccccceeecCC
Q 003360 491 KAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFY----SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTP 566 (826)
Q Consensus 491 ~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~----~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~ 566 (826)
+++|||+++ +.+..+|.. ....+|....+. ...+.+|++++.+|+|+++|||+|++|.+.++. +
T Consensus 235 ~~irv~~~~-----~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~------~ 302 (395)
T PF08596_consen 235 SDIRVFKPP-----KSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP------P 302 (395)
T ss_dssp SEEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S------S
T ss_pred cceEEEeCC-----CCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC------C
Confidence 999999999 666777765 312333333332 257999999999999999999999999996443 3
Q ss_pred CCCCCcccceeccCCCcEEEEcCCeeeeeeeecccCCc--cccCCCccccCCCCcCcccccccc
Q 003360 567 KPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQRDF--FRFLDSACQVYSYDPTLLQEGVVS 628 (826)
Q Consensus 567 ~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 628 (826)
..+..+.+..+++++|++++|+||+|++++++|++... .....+.|+||||++..|+||+|+
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~d~L~np~~~ip~rP~~s 366 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPTDTLYNPNLIIPPRPTIS 366 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES--------------B---TT----------
T ss_pred ccccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCCCeEECCCCCCCCcCccc
Confidence 34556678889999999999999999999999999866 344678999999999999999864
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-27 Score=246.36 Aligned_cols=356 Identities=16% Similarity=0.215 Sum_probs=243.2
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
|+.-.+.++-.+|+|-++|+|...|.|+|||.-.. ..+.|-++. .-..||..+.|.. +.-++.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~------------~hiLKnef~--v~aG~I~Di~Wd~---ds~RI~ 119 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK------------EHILKNEFQ--VLAGPIKDISWDF---DSKRIA 119 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCc------------ceeeeeeee--ecccccccceeCC---CCcEEE
Confidence 45555566666899999999999999999987652 122332211 1234899999965 223444
Q ss_pred EEccCCcCccceeEEEEcccCCcc--------eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTES--------RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~--------~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+.| .. .+..-.+..++..+.. +..-..+... ++-.++.++.++.+.+|+.
T Consensus 120 avG-EG--rerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps------------------RPfRi~T~sdDn~v~ffeG- 177 (603)
T KOG0318|consen 120 AVG-EG--RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS------------------RPFRIATGSDDNTVAFFEG- 177 (603)
T ss_pred EEe-cC--ccceeEEEEecCCCccceeeccceeEeeeeccCC------------------CceEEEeccCCCeEEEeeC-
Confidence 443 21 1222333333322211 0111122222 2233455666677777544
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee-
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS- 238 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~- 238 (826)
+|..+..+...|...|.|+.|+|||..+++++ |+.+.+|+.+....... ..+|+|+|.+
T Consensus 178 ----------------PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 178 ----------------PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred ----------------CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 25567777889999999999999999999988 99999998776554433 3579999999
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec---------------------------------ccccccccccCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL---------------------------------KQQSEKDFSLSGI 284 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l---------------------------------~~~~~~~~~~h~~ 284 (826)
|+||+..++|++.|.++||||++...+.....+ .......+.+|..
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 999999999999999999999854432111100 0111234678889
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc------cccceEEEeec-----------------------------
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA------IENSFLSFTGS----------------------------- 329 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~------~~~~~~~i~~s----------------------------- 329 (826)
.|+++..+|++.+|.+|+.||.|.-|+..++... |.+.+..+..+
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 9999999999999999999999999999877322 22222221110
Q ss_pred -------------CCCCe-----------------------------------------------EEEEE---------E
Q 003360 330 -------------KKGNS-----------------------------------------------HIIHS---------V 340 (826)
Q Consensus 330 -------------~~~~~-----------------------------------------------~~~~~---------~ 340 (826)
.++.. +.++. .
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 11100 00000 2
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+...|.++|+++++|||+.+||+|...+.|.+||..+.... ...+ .-|.+.|.+++|+| ++.++++|+.|..
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~w-~FHtakI~~~aWsP------~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNRW-AFHTAKINCVAWSP------NNKLVATGSLDTN 553 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-ccee-eeeeeeEEEEEeCC------CceEEEeccccce
Confidence 34456788999999999999999999999999999888763 2222 24888999999999 5899999999999
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
|.||++....
T Consensus 554 Viiysv~kP~ 563 (603)
T KOG0318|consen 554 VIIYSVKKPA 563 (603)
T ss_pred EEEEEccChh
Confidence 9999998543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=257.95 Aligned_cols=274 Identities=12% Similarity=0.126 Sum_probs=215.2
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEeCCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+-+.+|+.+.|+.++..+++|+ +|.+++|+... +....+ .+|++.|.+ |+|. +.-||||+.||+|++|+++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3457899999999999999999 99999996544 444455 899999999 9997 568999999999999999665
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. ..++.+|...|..++|+|+|++|++++.|.+-++||+++.... +...
T Consensus 252 ~~----------l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El---------------------L~QE 300 (459)
T KOG0272|consen 252 TP----------LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL---------------------LLQE 300 (459)
T ss_pred cc----------hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---------------------Hhhc
Confidence 42 2345689999999999999999999999999999999965332 3344
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|...|.+++|.+||.++++|+.|..-+|||++++.++..+ .+|..+|.+++|+| +|..|++|+.|++++|
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsP------NGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSP------NGYHLATGSSDNTCKV 371 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEe---cccccceeeEeECC------CceEEeecCCCCcEEE
Confidence 56778999999999999999999999999999999999444 47999999999999 4999999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccc--
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSH-- 500 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~-- 500 (826)
||++.-+.+.+.+.|.+..+.+.. ....+.|++.|+ |+.++||+..+
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~------------------------------~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKY------------------------------SPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred eeecccccceecccccchhhheEe------------------------------cccCCeEEEEcccCcceeeecCCCcc
Confidence 999987787777666655332211 112345666665 56899999763
Q ss_pred ---cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 501 ---AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 501 ---~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
.++|+...+-.+. .++++..++...-|..|++|.
T Consensus 422 ~~ksLaGHe~kV~s~D------------is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLD------------ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhcCCccceEEEE------------eccCCceEEEeccCceeeecc
Confidence 1233322222211 125677777777788888763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=235.15 Aligned_cols=289 Identities=15% Similarity=0.215 Sum_probs=217.5
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee--eC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY--AD 84 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~--~~ 84 (826)
.+++.|-.+|.++-| ++|+++|++++.||.+.+||.-+... +..+.+.+ .|+. +.
T Consensus 49 r~LkGH~~Ki~~~~w-s~Dsr~ivSaSqDGklIvWDs~TtnK------------~haipl~s----------~WVMtCA~ 105 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW-STDSRRIVSASQDGKLIVWDSFTTNK------------VHAIPLPS----------SWVMTCAY 105 (343)
T ss_pred EEecccccceeeeEe-cCCcCeEEeeccCCeEEEEEcccccc------------eeEEecCc----------eeEEEEEE
Confidence 356678889999999 57999999999999999999887410 00111111 3532 45
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
...|.+..+||-+. .-+|..+..... +|
T Consensus 106 sPSg~~VAcGGLdN----~Csiy~ls~~d~---------------------------------------~g--------- 133 (343)
T KOG0286|consen 106 SPSGNFVACGGLDN----KCSIYPLSTRDA---------------------------------------EG--------- 133 (343)
T ss_pred CCCCCeEEecCcCc----eeEEEecccccc---------------------------------------cc---------
Confidence 55677777888743 222222211100 00
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~ 241 (826)
.......+++|.+.+.|+.|..|+ .|++++ |.++.+|+...........+|.+.|.+ ++|
T Consensus 134 ----------------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 134 ----------------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ----------------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 001223368999999999999855 456665 999999987655544444899999999 888
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 -VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 -~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
+++.+++|+.|++.++||+..... ++.|.+|...|++|+|.|+|.-|++|+.|++.|+||++.....
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c----------~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-- 264 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQC----------VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-- 264 (343)
T ss_pred CCCCeEEecccccceeeeeccCcce----------eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE--
Confidence 999999999999999999943331 3456789999999999999999999999999999999954321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.. ........+|++++||-.|++|.+|+.|.++.|||.-.++.+-.. .+|...|+++..+
T Consensus 265 -----a~------------ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L---~GHeNRvScl~~s 324 (343)
T KOG0286|consen 265 -----AV------------YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL---AGHENRVSCLGVS 324 (343)
T ss_pred -----ee------------eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe---eccCCeeEEEEEC
Confidence 00 111122567999999999999999999999999999888777333 4999999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEE
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
| ||..+.+|++|.+++||.
T Consensus 325 ~------DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 325 P------DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred C------CCcEEEecchhHheeecC
Confidence 9 799999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-25 Score=239.28 Aligned_cols=449 Identities=16% Similarity=0.154 Sum_probs=321.8
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|++++- +|+|.+|++..+.|...+=++... .-+.++.+ +.||.++.|++ +|++++
T Consensus 55 ~~NI~~ial-Sp~g~lllavdE~g~~~lvs~~~r------------~Vlh~f~f-----k~~v~~i~fSP----ng~~fa 112 (893)
T KOG0291|consen 55 RYNITRIAL-SPDGTLLLAVDERGRALLVSLLSR------------SVLHRFNF-----KRGVGAIKFSP----NGKFFA 112 (893)
T ss_pred CCceEEEEe-CCCceEEEEEcCCCcEEEEecccc------------eeeEEEee-----cCccceEEECC----CCcEEE
Confidence 678999996 899999999999999999766552 01112222 34788888876 678887
Q ss_pred EccCCcCccceeEEEEcccCCc--ceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 93 MGASDFVSMNLLQIVLLNEQTE--SRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~--~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
.|-. +.+++|....... ..-+...-..-+++-|++.+.-+ .+...+++++.+-...+|+....
T Consensus 113 v~~g-----n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws-----~DSr~l~~gsrD~s~rl~~v~~~----- 177 (893)
T KOG0291|consen 113 VGCG-----NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS-----DDSRLLVTGSRDLSARLFGVDGN----- 177 (893)
T ss_pred EEec-----ceeEEEecCcchhcccCcceEeeeecCCccceeEEEec-----cCCceEEeccccceEEEEEeccc-----
Confidence 7654 4577776654433 11222233445677777766433 23345555677777778776653
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC------------------------c-
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP------------------------P- 224 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~------------------------~- 224 (826)
.+..+..+.+|..+|-.+-|..+...+.+-+ ||.+.+|.-..+ .
T Consensus 178 ----------k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 178 ----------KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred ----------cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 2334566799999999999999999999988 999999932200 0
Q ss_pred eeecccc---------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 225 LLDFETK---------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 225 ~~~~~~~---------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
...+.|. ....|++ ||+.-++|++|-..|...+|++..-.+ ++.+. ....+|..++|+.
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l--ih~LS--------is~~~I~t~~~N~ 317 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL--IHSLS--------ISDQKILTVSFNS 317 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE--EEEee--------cccceeeEEEecc
Confidence 0000011 1144555 999999999999999999999954442 33333 3446899999999
Q ss_pred CCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 294 TSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 294 ~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
.|.++|.|+.. |.+.||++....+. ++...|-..+++++++|||+++|+|++||.|+|
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYV---------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYV---------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred cCCEEEEcCCccceEEEEEeecccee---------------------eeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 99999998765 89999999865442 566667778999999999999999999999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEec
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILN 452 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~ 452 (826)
||...+-|+.++. .|.+.|+.++|.. .++.+++.+.||+|+.||+...+...+|. .+.+...-|+..
T Consensus 377 Wn~~SgfC~vTFt---eHts~Vt~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~Qfscvav-- 443 (893)
T KOG0291|consen 377 WNTQSGFCFVTFT---EHTSGVTAVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAV-- 443 (893)
T ss_pred EeccCceEEEEec---cCCCceEEEEEEe------cCCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEE--
Confidence 9999999997775 8999999999999 49999999999999999999999988863 223222222221
Q ss_pred CCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC--cEEEEeccc-----cccccceeeeeeecCCCCceeeEee
Q 003360 453 GQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK--AACAYSLSH-----AVQGVKKVLYKKKFHSSSCCWASTF 525 (826)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~--~irv~sl~~-----~~~g~~k~~~k~~~~~~~c~~~~~~ 525 (826)
.+.+.+|++++.+ .|.||++.. .+.|+..++...-+.
T Consensus 444 --------------------------D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~---------- 487 (893)
T KOG0291|consen 444 --------------------------DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS---------- 487 (893)
T ss_pred --------------------------cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc----------
Confidence 2344577777766 699999873 233444444333222
Q ss_pred eeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeee
Q 003360 526 YSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFF 595 (826)
Q Consensus 526 ~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~ 595 (826)
+.+..|+...=|-+|++|++-+-....+. .+-.+.|. |++......+-||||-.|+...-+++
T Consensus 488 --~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 488 --PDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFR-----PDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred --cccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEc-----CCCCeEEEEEecceEEEEEhhhceee
Confidence 45667777777888999887654333332 23367887 67888888899999999998666665
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=237.37 Aligned_cols=275 Identities=22% Similarity=0.304 Sum_probs=209.3
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.||+|.|.+ +|++||||..||.+++|+.... +......|+.||..++|.. .|..++
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-----------------l~~tl~~HkgPI~slKWnk----~G~yil 292 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-----------------LISTLGQHKGPIFSLKWNK----KGTYIL 292 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEecCch-----------------hhhhhhccCCceEEEEEcC----CCCEEE
Confidence 68999999965 9999999999999999987763 1123456788999999964 233333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+||- +|..++||...
T Consensus 293 S~~v---------------------------------------------------------D~ttilwd~~~-------- 307 (524)
T KOG0273|consen 293 SGGV---------------------------------------------------------DGTTILWDAHT-------- 307 (524)
T ss_pred eccC---------------------------------------------------------CccEEEEeccC--------
Confidence 4433 23334454422
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-CCceeecccccCCccee--eCCCCCEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-VPPLLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
.......++|..+--.+.|-.+..+ ++++ |+.|+++... ..+..++ .+|.+.|.+ |.|.+.+|+|
T Consensus 308 ---------g~~~q~f~~~s~~~lDVdW~~~~~F-~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 308 ---------GTVKQQFEFHSAPALDVDWQSNDEF-ATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ---------ceEEEeeeeccCCccceEEecCceE-eecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCceEEE
Confidence 0122234556655444556555544 4444 8999998544 3456666 779999999 9999999999
Q ss_pred EECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEEeCCCCCc
Q 003360 249 GHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---------RVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 249 gs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---------~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
++.|+|++||.. .... ...+..|...|..+.|+|.+ ..+++++.|++|++||+..+.+
T Consensus 377 ~SdD~TlkiWs~~~~~~-----------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~- 444 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNS-----------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP- 444 (524)
T ss_pred ecCCCeeEeeecCCCcc-----------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-
Confidence 999999999998 3333 22345788899999999965 4799999999999999984433
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+.+|..+|.+|+|+|+|.++|+|+-||.|.+|+++++++.... .....|..++
T Consensus 445 ----------------i----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~----~~~~~Ifel~ 500 (524)
T KOG0273|consen 445 ----------------I----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY----QGTGGIFELC 500 (524)
T ss_pred ----------------e----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee----cCCCeEEEEE
Confidence 2 556789999999999999999999999999999999999988443 3455689999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|+. +++.|.++-+|+.+.+.|++
T Consensus 501 Wn~------~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 501 WNA------AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EcC------CCCEEEEEecCCCceEEEec
Confidence 988 58999999999999999875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=261.21 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=174.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+-+|.++|..++|+|+.++|++++ |.++|+|............+|..+|+. |+|.|-++|||+.|++-|+|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 3679999999999999999999999 999999976653333333699999999 9999999999999999999998332
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. + ++ .+.+|-+.|.|++|+|++.++++||.|.+||+||+.++.. + -.+.
T Consensus 526 ~--P---lR-----ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----------------V----RiF~ 574 (707)
T KOG0263|consen 526 K--P---LR-----IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----------------V----RIFT 574 (707)
T ss_pred C--c---hh-----hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----------------E----EEec
Confidence 2 1 22 2357889999999999999999999999999999985433 2 3345
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|.++|++|+|||+|++||+|++||.|.+||+.++..+..+ .+|.+.|.++.|+. |+..|++|+.|.+|++
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---~~Ht~ti~SlsFS~------dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---KGHTGTIYSLSFSR------DGNVLASGGADNSVRL 645 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh---hcccCceeEEEEec------CCCEEEecCCCCeEEE
Confidence 68999999999999999999999999999999999888433 47899999999998 7999999999999999
Q ss_pred EECCC
Q 003360 424 LDSDN 428 (826)
Q Consensus 424 wd~~t 428 (826)
||...
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 99874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=247.93 Aligned_cols=424 Identities=14% Similarity=0.124 Sum_probs=284.3
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
....|...|++|... +|+.-+++++-|-.+.+||+.+-...++...-+. -+.+..++= ..+.++
T Consensus 187 ~~~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~--------------~E~vv~l~~-~~~~~~ 250 (775)
T KOG0319|consen 187 TMILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES--------------LESVVRLRE-ELGGKG 250 (775)
T ss_pred HHHhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhh--------------eeeEEEech-hcCCcc
Confidence 344577899999984 6999999999999999999965433333211111 111121110 112233
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.++..||+.. ++++..+........+ .+....+.+...+. ....+++++++..|.+||..++.
T Consensus 251 ~~~~TaG~~g~-----~~~~d~es~~~~~~~~--~~~~~e~~~~~~~~--------~~~~~l~vtaeQnl~l~d~~~l~- 314 (775)
T KOG0319|consen 251 EYIITAGGSGV-----VQYWDSESGKCVYKQR--QSDSEEIDHLLAIE--------SMSQLLLVTAEQNLFLYDEDELT- 314 (775)
T ss_pred eEEEEecCCce-----EEEEecccchhhhhhc--cCCchhhhcceecc--------ccCceEEEEccceEEEEEccccE-
Confidence 45556666633 4444333222111111 11122233333332 23567889999999999877631
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEE-eeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL-ITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f-s~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
..-.+-+-+..|..++| .|..++++.+. .+.+|+|+....... ...+|+..|.+ ....|
T Consensus 315 ----------------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 315 ----------------IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred ----------------EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccC
Confidence 11123455667888887 57889999998 889999965543333 44889999999 45677
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
-+|+||+.|.+|++|.+....-.. +. .....+|...|.+|+++..+ ..|+++|.|+++++|++.......
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~---~~---~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~--- 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKS---LC---VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA--- 448 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchh---hh---hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc---
Confidence 899999999999999872222100 11 23346899999999997765 689999999999999998632210
Q ss_pred eEEEeecCCCCeEEEE-EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 323 FLSFTGSKKGNSHIIH-SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.+..+. +.....|...|+|++++|+..++|+||.|.+.+||++.+..++.++ .+|...|+++.|++
T Consensus 449 ----------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 449 ----------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSK 515 (775)
T ss_pred ----------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe---eCCccceEEEEecc
Confidence 111000 0122346778999999999999999999999999999988877544 59999999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK 481 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (826)
. +++++++|.|++|+||.+.+..|++++.+|.. .++...++. .+
T Consensus 516 ~------dq~laT~SgD~TvKIW~is~fSClkT~eGH~~---aVlra~F~~---------------------------~~ 559 (775)
T KOG0319|consen 516 N------DQLLATCSGDKTVKIWSISTFSCLKTFEGHTS---AVLRASFIR---------------------------NG 559 (775)
T ss_pred c------cceeEeccCCceEEEEEeccceeeeeecCccc---eeEeeeeee---------------------------CC
Confidence 5 89999999999999999999999999988864 445555554 12
Q ss_pred CCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 482 QWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 482 ~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.++|.+|+++-++||++. ...|+....-+ ..=.|+... ++....++..-+||.|..|
T Consensus 560 ~qliS~~adGliKlWnik-----t~eC~~tlD~H-~DrvWaL~~-~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIK-----TNECEMTLDAH-NDRVWALSV-SPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred cEEEeccCCCcEEEEecc-----chhhhhhhhhc-cceeEEEee-cCccceeEecCCCeEEEEe
Confidence 367788889999999998 44454443222 233454321 2444455566667776655
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=221.08 Aligned_cols=236 Identities=13% Similarity=0.191 Sum_probs=189.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-c
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-P 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~ 224 (826)
.++-...+..+++|++..-. .. .......+.+|+..|+.+..++++.+.++++ |+++++|+.... .
T Consensus 30 ~l~sasrDk~ii~W~L~~dd-----~~-------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~ 97 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDD-----IK-------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES 97 (315)
T ss_pred eEEEcccceEEEEEEeccCc-----cc-------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE
Confidence 34455566778888876621 00 1112345789999999999999999999999 999999976653 4
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVS 300 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Las 300 (826)
...| .+|+..|.+ |+++.+.|+||+.|.+|++||.-+... +++.. ..+...|+|+.|+|. ..++++
T Consensus 98 t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~------~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 98 TRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHE------DSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEec------CCCcCcEEEEEEcCCCCCcEEEE
Confidence 4444 899999999 999999999999999999999966653 33321 123679999999998 689999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.|++|++||+++-+.. ..+..|.+.|+.+++||||.++++|+.||.+.+||++.++.
T Consensus 168 ~s~DktvKvWnl~~~~l~---------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLR---------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred ccCCceEEEEccCCcchh---------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 999999999999844331 23445788899999999999999999999999999999999
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++++ ++...|.+++|+| ..+.++...+..|+|||+.++.++..+.
T Consensus 227 lysl----~a~~~v~sl~fsp-------nrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 227 LYSL----EAFDIVNSLCFSP-------NRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred eEec----cCCCeEeeEEecC-------CceeEeeccCCceEEEeccchhhhhhcc
Confidence 9766 5788999999999 5666666667779999999999887764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=221.24 Aligned_cols=288 Identities=13% Similarity=0.116 Sum_probs=211.5
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
..-.+.+|...|+.++..+.++.++ +++ |.++.+|+.. .+.......+|...|.. .++++++.++|+.||+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 3456789999999999998865554 466 9999999432 22222223779999988 8999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
+|+||+.+.+. ...|.+|...|.+++|+|+.+.+++|+.|.++++|+......
T Consensus 87 lrlWDl~~g~~----------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------- 139 (315)
T KOG0279|consen 87 LRLWDLATGES----------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------- 139 (315)
T ss_pred EEEEEecCCcE----------EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------
Confidence 99999944331 223568999999999999999999999999999999873311
Q ss_pred EEEEEEEEeeccCCeEEEEEccC--CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRN--SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~--g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. +....+...|+|+.|+|+ ...+++++.|++|++||+++.++...+ .+|+..++.++++| ||..+
T Consensus 140 ~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSp------DGslc 207 (315)
T KOG0279|consen 140 YT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSP------DGSLC 207 (315)
T ss_pred EE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc---ccccccEEEEEECC------CCCEE
Confidence 11 111112567999999998 678999999999999999998877443 48999999999999 79999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
++|+.||.+.+||++.++.+.++.. ...+.++.+ .|....+.+..+..
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a----~~~v~sl~f----------------------------spnrywL~~at~~s 255 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEA----FDIVNSLCF----------------------------SPNRYWLCAATATS 255 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccC----CCeEeeEEe----------------------------cCCceeEeeccCCc
Confidence 9999999999999999999877521 122233333 33444566667788
Q ss_pred EEEEeccccccccceeeeeeecCCC-------CceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKKFHSS-------SCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~~~~~-------~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
|+||++.. +.++...+.... .-.+.+..-+..|.-|.+.+.+|-|+++-+
T Consensus 256 IkIwdl~~-----~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 256 IKIWDLES-----KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred eEEEeccc-----hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 99999973 223222211100 001111112267888888999999988753
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=246.33 Aligned_cols=341 Identities=13% Similarity=0.178 Sum_probs=244.5
Q ss_pred cceEEEecCCC-----CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 15 QVTSACWACPI-----GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 15 ~i~slcW~~p~-----g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
.+.++.... + |.++.|++.+|.+++||..++.-......+ ..+. +..+ ........
T Consensus 235 ~~E~vv~l~-~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~------------~~~e---~~~~---~~~~~~~~ 295 (775)
T KOG0319|consen 235 SLESVVRLR-EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS------------DSEE---IDHL---LAIESMSQ 295 (775)
T ss_pred heeeEEEec-hhcCCcceEEEEecCCceEEEEecccchhhhhhccC------------Cchh---hhcc---eeccccCc
Confidence 455666543 5 679999999999999999987211110000 0000 1111 11122334
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+++...+. +++.++..+. +..+--.-..+.+.||.++. +....++|.++++.|.+|+....
T Consensus 296 ~l~vtaeQ-------nl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG-------~e~~~laVATNs~~lr~y~~~~~---- 356 (775)
T KOG0319|consen 296 LLLVTAEQ-------NLFLYDEDEL-TIVKQIVGYNDEILDMKFLG-------PEESHLAVATNSPELRLYTLPTS---- 356 (775)
T ss_pred eEEEEccc-------eEEEEEcccc-EEehhhcCCchhheeeeecC-------CccceEEEEeCCCceEEEecCCC----
Confidence 44433321 1333333321 11112223466788888773 45678999999999999976652
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCc--eeecccccCCccee--eCC-
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPP--LLDFETKLKDGSQS--HSK- 241 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~--~~~~~~~h~g~V~~--~s~- 241 (826)
+-..+++|...|..+....+|.++++++ |..+++|+.. ... ......+|++.|.+ ++.
T Consensus 357 --------------~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 357 --------------YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred --------------ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 2225799999999999888888999999 9999999542 211 12224789999988 443
Q ss_pred CCCEEEEEECCCcEEEEeCCC--Ccee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 242 VKNLFITGHSDGAINFWDVSC--PLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~--~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
...++++++.|+++++|++.. +... .++..+ .....|+..|+||+++|+..++|+||.|.+.+||++.....
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~----~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l- 497 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR----YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL- 497 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhh----HHHHhhcccccceEecCCCceEEecccccceeeecccCceE-
Confidence 446999999999999999933 2211 111111 12246889999999999999999999999999999982211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+..|...|.|+.|++..+.+|++|.|++|+||.+.+..|+.++ .+|...|....
T Consensus 498 ---------------~-----~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~ 554 (775)
T KOG0319|consen 498 ---------------L-----GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRAS 554 (775)
T ss_pred ---------------E-----EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeee
Confidence 1 455667888999999999999999999999999999999999665 49999999999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
|.. ++..|++++.||-|++|+..++.|+.++-.|...
T Consensus 555 F~~------~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 555 FIR------NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred eee------CCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 998 5999999999999999999999999998666543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=234.23 Aligned_cols=289 Identities=10% Similarity=0.182 Sum_probs=217.6
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC-CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS-VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+.+|...|..++++.+...+++|+.+.+++|+.. ...+.++. .+.+.+ |-|.++++++|...|.+.++|+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 34667899999999999999999999999999999776 34555552 234555 9999999999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe---EEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS---HII 337 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~---~~~ 337 (826)
....+ ...+..|.++|+.|+.+||+..+++|+.|.+|++||+.-- .. ..+++ ..+
T Consensus 442 aS~~l----------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~--------~~----~~gt~~k~lsl 499 (888)
T KOG0306|consen 442 ASASL----------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV--------VS----VPGTQKKVLSL 499 (888)
T ss_pred ehhhh----------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE--------ec----cCcccceeeee
Confidence 43332 2234689999999999999999999999999999999721 11 12222 333
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
+.-+.......|.|+.+||||++||+|--|.+|+||-+.+.+...+. .+|.-||.|+..+| |+..+++||.
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~------DSklivTgSA 570 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISP------DSKLIVTGSA 570 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---cccccceeEEeccC------CcCeEEeccC
Confidence 33455666888999999999999999999999999999888766444 39999999999999 7999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~ 496 (826)
|.+|++|-+.-|.|-.++-.|. ..+.+++++. +..+...|+ +..++-|
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHd---DSvm~V~F~P----------------------------~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHD---DSVMSVQFLP----------------------------KTHLFFTCGKDGKVKQW 619 (888)
T ss_pred CCceEEeccccchhhhhhhccc---CceeEEEEcc----------------------------cceeEEEecCcceEEee
Confidence 9999999999999998874443 3455666653 334555555 4579999
Q ss_pred eccc-----cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCC
Q 003360 497 SLSH-----AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 497 sl~~-----~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~ 549 (826)
+-.. .+.|++..++.... .++|.-++....|-.|++|..-+
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav------------~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAV------------SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhhheeeccchheeeeeEE------------cCCCCeEEeccCCceeEeeeccC
Confidence 7552 12233333332211 14455556666677788777666
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=213.55 Aligned_cols=243 Identities=15% Similarity=0.171 Sum_probs=192.0
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecc
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFE 229 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~ 229 (826)
....-.+.+||..+- . ++ +..++..|...|+.+.|..+|+.+.+|+ ||++++|+.+.+... ..
T Consensus 57 aa~~qhvRlyD~~S~----------n----p~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~ 120 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSN----------N----PN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RN 120 (311)
T ss_pred hccCCeeEEEEccCC----------C----CC-ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hh
Confidence 334457788888771 0 11 3456789999999999999999999999 999999988763322 23
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
..|...|.+ .+|+..-|++|.++|.|++||+..... ...+-. ....+|+++...|++.+|+.+...|..
T Consensus 121 ~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c--~~~liP-------e~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 121 YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC--THELIP-------EDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc--ccccCC-------CCCcceeeEEEcCCCcEEEEecCCccE
Confidence 567888988 899999999999999999999944321 111221 122689999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
.+|++-...... ...+. .++..|++.++...+||++++||+++.|.+|+||++.+. ...... .
T Consensus 192 yvW~l~~~~~~s-----------~l~P~----~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~-l 254 (311)
T KOG0315|consen 192 YVWRLLNHQTAS-----------ELEPV----HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELV-L 254 (311)
T ss_pred EEEEccCCCccc-----------cceEh----hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEE-e
Confidence 999997543211 00011 456677889999999999999999999999999999887 222222 3
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
.+|...++..+|+. |+.||++|++|+.+++||+.+|+.+..+.+|.+.
T Consensus 255 ~gh~rWvWdc~FS~------dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 255 TGHQRWVWDCAFSA------DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ecCCceEEeeeecc------CccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 57889999999998 7999999999999999999999999998777764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=229.49 Aligned_cols=298 Identities=17% Similarity=0.192 Sum_probs=218.0
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccccccccccc--cc--CCCCCCcCCeEEEEEeeeCCCC
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICK--LN--LGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
++.+|++.||.+-.-..+|+|..|-..++|++..... ....+ ...| ++ .........|+.++|.. +
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~----~~~~q--~~lrh~~~~~~~s~~~nkdVT~L~Wn~----~ 246 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSN----IGSTQ--LVLRHCIREGGKSVPSNKDVTSLDWNN----D 246 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhcc----ccchh--hhhhhhhhhhcccCCccCCcceEEecC----C
Confidence 6889999999643444999999999999999985200 00000 0111 11 12222334567777754 3
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
|.++++ +..+|++.+|+...-
T Consensus 247 G~~Lat---------------------------------------------------------G~~~G~~riw~~~G~-- 267 (524)
T KOG0273|consen 247 GTLLAT---------------------------------------------------------GSEDGEARIWNKDGN-- 267 (524)
T ss_pred CCeEEE---------------------------------------------------------eecCcEEEEEecCch--
Confidence 444443 444567777775441
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~ 244 (826)
...++..|..+|..++|+-.|.++++++ |+++.+|+...+.......-|..+... |.. ..
T Consensus 268 ----------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~ 330 (524)
T KOG0273|consen 268 ----------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-ND 330 (524)
T ss_pred ----------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cc
Confidence 1234578999999999999999999999 999999987543332221334544333 433 35
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
-+++.+.||.|+++.+..... ...+.+|..+|.+|.|+|.+.+|++++.|++++||......+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P----------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------ 394 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRP----------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------ 394 (524)
T ss_pred eEeecCCCceEEEEEecCCCc----------ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------
Confidence 689999999999999955442 3345679999999999999999999999999999998754332
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccC---------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN---------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
..+..|...|..+.|+|+ +..+++++.|++|++||+..+.+++.+. .|..+|.
T Consensus 395 ---------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVy 456 (524)
T KOG0273|consen 395 ---------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVY 456 (524)
T ss_pred ---------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceE
Confidence 122234555777777765 3579999999999999999999997764 8999999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+++|+| ++.++++|+.||.|.+|+..+++.++++
T Consensus 457 svafS~------~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 457 SVAFSP------NGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EEEecC------CCcEEEecCCCCeeEeccccchheeEee
Confidence 999999 6999999999999999999999998876
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=252.10 Aligned_cols=252 Identities=12% Similarity=0.154 Sum_probs=200.2
Q ss_pred CCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC------------Cce-------------------
Q 003360 178 PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV------------PPL------------------- 225 (826)
Q Consensus 178 ~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~------------~~~------------------- 225 (826)
..++.....+...-...|+|+.|+.++..+|.|. |..|++|.... ...
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 3344455555555667899999999999888888 99999994220 000
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.....+|.|.|.. |+|+.++|++++.|++||+|.+...... +. ..+|..+|+.+.|+|.|-+||+|+.
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~----V~------y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL----VI------YKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE----EE------ecCCCcceeeEEecCCceEEEecCC
Confidence 0013579999988 9999999999999999999999444421 22 2478899999999999999999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|++.++|....... . -.+..|.+.|.|+.|+|+..++|+||.|.+||+||..+|..+..
T Consensus 514 D~tArLWs~d~~~P-----------------l----RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 514 DQTARLWSTDHNKP-----------------L----RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CceeeeeecccCCc-----------------h----hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE
Confidence 99999999874321 1 22345678899999999999999999999999999999998844
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANL 463 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~ 463 (826)
+ .+|.++|++++|+|+ |.+|++|+.||.|++||+.+|+.+.++..| .+.+.++.+.
T Consensus 573 F---~GH~~~V~al~~Sp~------Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H---t~ti~SlsFS------------ 628 (707)
T KOG0263|consen 573 F---TGHKGPVTALAFSPC------GRYLASGDEDGLIKIWDLANGSLVKQLKGH---TGTIYSLSFS------------ 628 (707)
T ss_pred e---cCCCCceEEEEEcCC------CceEeecccCCcEEEEEcCCCcchhhhhcc---cCceeEEEEe------------
Confidence 4 589999999999995 999999999999999999999999998777 3444555442
Q ss_pred cccccccCCCCCCCCCCCCC-EEEEeecCcEEEEeccc
Q 003360 464 SNVAGMNKGSPKENAVPKQW-FVLLCSEKAACAYSLSH 500 (826)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~-~vv~~se~~irv~sl~~ 500 (826)
.++. +++.+.|++|++|++..
T Consensus 629 ----------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 629 ----------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ----------------cCCCEEEecCCCCeEEEEEchh
Confidence 2333 55555677999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=222.85 Aligned_cols=334 Identities=19% Similarity=0.232 Sum_probs=247.1
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
+...|.|=|.|+.+ +|||++||+.+.||.|.++|=.++.... .+. ....|+.-|..+.|.+ +.
T Consensus 185 s~r~HskFV~~VRy-sPDG~~Fat~gsDgki~iyDGktge~vg------------~l~-~~~aHkGsIfalsWsP---Ds 247 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-SPDGSRFATAGSDGKIYIYDGKTGEKVG------------ELE-DSDAHKGSIFALSWSP---DS 247 (603)
T ss_pred cccccccceeeEEE-CCCCCeEEEecCCccEEEEcCCCccEEE------------Eec-CCCCccccEEEEEECC---CC
Confidence 44556778889998 7899999999999999999988872111 111 1445777899999975 34
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
.+++.++++ ....+|.....+..++ +++...+.|+.+-+- -....++.++.+|.|.+++...
T Consensus 248 ~~~~T~SaD-----kt~KIWdVs~~slv~t----~~~~~~v~dqqvG~l------Wqkd~lItVSl~G~in~ln~~d--- 309 (603)
T KOG0318|consen 248 TQFLTVSAD-----KTIKIWDVSTNSLVST----WPMGSTVEDQQVGCL------WQKDHLITVSLSGTINYLNPSD--- 309 (603)
T ss_pred ceEEEecCC-----ceEEEEEeeccceEEE----eecCCchhceEEEEE------EeCCeEEEEEcCcEEEEecccC---
Confidence 566666655 3466776666544333 334444555443221 1146789999999999988776
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------------C
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------------P 223 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------------~ 223 (826)
+. .+..+.+|.-.||++..++++.++++|+ ||.|.-|+... .
T Consensus 310 -------------~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 310 -------------PS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred -------------CC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 22 4456789999999999999999999999 99999994110 0
Q ss_pred ceeec----------------------c---cc-----cCC-------------------cc---------ee--eCCCC
Q 003360 224 PLLDF----------------------E---TK-----LKD-------------------GS---------QS--HSKVK 243 (826)
Q Consensus 224 ~~~~~----------------------~---~~-----h~g-------------------~V---------~~--~s~~~ 243 (826)
.+.+. + .| ... .+ .+ ++|++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 00000 0 00 000 00 11 78999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
..++.|++||.|+||.+++..+.. +.....|.++|++|+|+|++.+||+|...+.|.+||+......
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~e--------e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~----- 522 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKE--------EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK----- 522 (603)
T ss_pred CEEEEecccceEEEEEecCCcccc--------eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-----
Confidence 999999999999999997766311 1123468899999999999999999999999999999854331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
. .....|.+.|.||+|+|+..+||+|+-|-.|.||++..+... ..+...|...|+.+.|..
T Consensus 523 ------------~---~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wld-- 583 (603)
T KOG0318|consen 523 ------------T---NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWLD-- 583 (603)
T ss_pred ------------c---ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEec--
Confidence 1 445668899999999999999999999999999999988755 334467888899999985
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...+++.+.|..|++|+..
T Consensus 584 -----e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 584 -----ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----CceEEeccCcceeEEeccc
Confidence 7889999999999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=232.64 Aligned_cols=243 Identities=16% Similarity=0.254 Sum_probs=200.4
Q ss_pred ceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe
Q 003360 127 PCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF 206 (826)
Q Consensus 127 ~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~ 206 (826)
++.++.+.|.. ..+++++.+|++.+|+...+. +...+..|+++|+++.+++++.+
T Consensus 98 ~V~~v~WtPeG--------RRLltgs~SGEFtLWNg~~fn-----------------FEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 98 PVNVVRWTPEG--------RRLLTGSQSGEFTLWNGTSFN-----------------FETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ceeeEEEcCCC--------ceeEeecccccEEEecCceee-----------------HHHHhhhhcccceeEEEccCCCE
Confidence 44555555443 678999999999999997631 22335789999999999999999
Q ss_pred EEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 207 ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 207 l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
+++|. ++.|+.|......+..+...|...|.+ |+|+...++|++.||+|+|||...... +..+.+|+
T Consensus 153 miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----------e~vL~GHg 222 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----------ERVLRGHG 222 (464)
T ss_pred EEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----------hheeccCC
Confidence 99999 999999976665566664556688988 999999999999999999999943331 22346899
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
..|.+++|+|...++++|+.|..|++||.+++.+. .....|+..|+.+.|++++.+|++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl---------------------~tlh~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL---------------------ATLHGHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchh---------------------hhhhhccceEEEEEEcCCCCeeEE
Confidence 99999999999999999999999999999977652 334456778999999999999999
Q ss_pred EecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 364 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
++.|..++|+|++..+-+++. .+|..-|+++.|+|. ...++.+|+.||.|..|....-+.+.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~-----~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPL-----NESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred ccCCceEEEEehhHhHHHHHh---hcchhhheeeccccc-----cccceeeccCCCceEEEecccccccc
Confidence 999999999999976666444 479999999999997 57889999999999999988444443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-24 Score=210.51 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=197.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...++..+.+|.|++||..+ .++.+. +|....-|..++|+|.+..++.|+ |....+|+....
T Consensus 67 sr~ivSaSqDGklIvWDs~T----------------tnK~ha-ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFT----------------TNKVHA-IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred cCeEEeeccCCeEEEEEccc----------------ccceeE-EecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 35677888999999999877 233322 566667899999999999999999 999999965432
Q ss_pred ------ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-C
Q 003360 224 ------PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-T 294 (826)
Q Consensus 224 ------~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~ 294 (826)
.......+|++.+.| |-. ...|+||+.|.+.-+||+..... ...|.+|...|.+|+++| +
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~----------~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ----------TQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE----------EEEecCCcccEEEEecCCCC
Confidence 222224789999999 544 66799999999999999944442 234568999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
++.|++|+.|++.+|||++.+.+ . -.+..|.+.|.+++|.|+|.-+++|++|+++|+||
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c-----------------~----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQC-----------------V----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred CCeEEecccccceeeeeccCcce-----------------e----EeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 99999999999999999995433 1 45667888999999999999999999999999999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+|...-+.... ......+|++++|+. +|++|++|..|.++.+||.-.++.+..+.+|.+.
T Consensus 258 lRaD~~~a~ys-~~~~~~gitSv~FS~------SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 258 LRADQELAVYS-HDSIICGITSVAFSK------SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred ecCCcEEeeec-cCcccCCceeEEEcc------cccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 99876664333 235677999999999 4999999999999999999999999998888764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=231.98 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=224.5
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...+..+++| |.--+|++++-.|.|.+||-+-+... ....+|..||.-+.+.. ..-+
T Consensus 7 skSsRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli----------------~rFdeHdGpVRgv~FH~----~qpl 65 (1202)
T KOG0292|consen 7 SKSSRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLI----------------DRFDEHDGPVRGVDFHP----TQPL 65 (1202)
T ss_pred cccccccceecC-CCCCEEEEeecCceeeeehhhhhhHH----------------hhhhccCCccceeeecC----CCCe
Confidence 346678899996 79999999999999999998875111 12345677888888766 4568
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
||+||+|- .+.||.+....
T Consensus 66 FVSGGDDy----kIkVWnYk~rr--------------------------------------------------------- 84 (1202)
T KOG0292|consen 66 FVSGGDDY----KIKVWNYKTRR--------------------------------------------------------- 84 (1202)
T ss_pred EEecCCcc----EEEEEecccce---------------------------------------------------------
Confidence 99999843 34444332221
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
..+++-+|...|..+.|++.-+++++++ |.+|++|+.+.........+|...|.| |+|...+++
T Consensus 85 -------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIV 151 (1202)
T KOG0292|consen 85 -------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIV 151 (1202)
T ss_pred -------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEE
Confidence 2345678999999999999999999999 899999998877777667999999999 999999999
Q ss_pred EEECCCcEEEEeCCCCcee---ee------------eeccccc----ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 248 TGHSDGAINFWDVSCPLFL---LI------------LSLKQQS----EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~---~i------------~~l~~~~----~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
+||-|.||||||+++-... +- ..|-.+. ...+++|+..|+.++|+|.-.+++||+.|..|+
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 9999999999998542210 00 0000000 123578999999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEE-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+|++..... |.+ ....|...|+++-|+|...++++.++|++|+|||+...+.+.++.
T Consensus 232 lWrmnetKa--------------------WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-- 289 (1202)
T KOG0292|consen 232 LWRMNETKA--------------------WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-- 289 (1202)
T ss_pred EEEeccccc--------------------eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--
Confidence 999973311 111 123567889999999999999999999999999999999987775
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
......+.++-.| .--|++++.|+-+.||-+..
T Consensus 290 -rendRFW~laahP-------~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 290 -RENDRFWILAAHP-------ELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred -ccCCeEEEEEecC-------CcceeeeecCCceEEEEEcc
Confidence 4456788888888 44466677777777777663
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=228.76 Aligned_cols=280 Identities=16% Similarity=0.252 Sum_probs=215.2
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.-.|-.++|. |+|+.|+||++.|...+|+..+. . +..--..|..||..+.|.. ++..+|
T Consensus 96 kc~V~~v~Wt-PeGRRLltgs~SGEFtLWNg~~f-------n---------FEtilQaHDs~Vr~m~ws~----~g~wmi 154 (464)
T KOG0284|consen 96 KCPVNVVRWT-PEGRRLLTGSQSGEFTLWNGTSF-------N---------FETILQAHDSPVRTMKWSH----NGTWMI 154 (464)
T ss_pred ccceeeEEEc-CCCceeEeecccccEEEecCcee-------e---------HHHHhhhhcccceeEEEcc----CCCEEE
Confidence 3478899995 79999999999999999987543 0 0011224677999999986 455555
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+|.. .|.|-.|+.+.-.
T Consensus 155 SgD~---------------------------------------------------------gG~iKyWqpnmnn------ 171 (464)
T KOG0284|consen 155 SGDK---------------------------------------------------------GGMIKYWQPNMNN------ 171 (464)
T ss_pred EcCC---------------------------------------------------------CceEEecccchhh------
Confidence 5543 2344455544310
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITG 249 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tg 249 (826)
....-..|...|++++|+|++..+++++ |++|++|+...+.......+|.-.|.+ |||...+|++|
T Consensus 172 -----------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 172 -----------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred -----------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 1111133448999999999999999999 999999976654333333778888888 99999999999
Q ss_pred ECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 250 HSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 250 s~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
+.|..|++||. ++.++ ++ +..|...|..+.|+|++.+|+++|.|..+++||++.-+..
T Consensus 241 skDnlVKlWDprSg~cl---~t--------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl---------- 299 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCL---AT--------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL---------- 299 (464)
T ss_pred cCCceeEeecCCCcchh---hh--------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH----------
Confidence 99999999999 66552 22 3468899999999999999999999999999999832110
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
..+..|...|+++.|+|- ..++++|+.||.|..|.+.....+ ..+...|...|++++|.|.
T Consensus 300 -----------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--~~i~~AHd~~iwsl~~hPl----- 361 (464)
T KOG0284|consen 300 -----------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--GEIPPAHDGEIWSLAYHPL----- 361 (464)
T ss_pred -----------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc--cCCCcccccceeeeecccc-----
Confidence 233456788999999994 457899999999999999744444 3445689999999999997
Q ss_pred CCcEEEEEECCCcEEEEECC
Q 003360 408 EKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|.+|++|+.|.++++|...
T Consensus 362 -Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 362 -GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred -ceeEeecCCCcceeeeccC
Confidence 9999999999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=239.48 Aligned_cols=213 Identities=18% Similarity=0.248 Sum_probs=176.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
.|...|+++.|+++|+.+++++ ++.+++|...... .... .+|..+|.+ |+|+++++++|+.|++|||||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3478999999999999999987 9999999763322 2222 679999988 9999999999999999999999 33
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. .+++ +.+|...|++++|+|+++++++|+.|++|+|||++++.+ . ..+
T Consensus 236 ~~--~~~~--------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-----------------~----~~l 284 (456)
T KOG0266|consen 236 GR--NLKT--------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-----------------V----RKL 284 (456)
T ss_pred Ce--EEEE--------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-----------------E----Eee
Confidence 22 1222 358999999999999999999999999999999995433 1 445
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
..|.++|++++|++++.+|++++.||.|+|||+.++. ++....-..... ++++++|+| ++.++++++.|+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp------~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP------NGKYLLSASLDRT 357 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC------CCcEEEEecCCCe
Confidence 5678899999999999999999999999999999999 443333222223 799999999 6999999999999
Q ss_pred EEEEECCCCceEEeeeccCCC
Q 003360 421 VLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+++||+..+.++..+..|...
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEEEEccCCcceeeecccCCc
Confidence 999999999999998777665
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=205.34 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=211.4
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
|...+-++|||+-.|..||+++.|..|++|+...+.. -..+-.+ ...++..|..++|.+ .|+++
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vl-d~~hkrsVRsvAwsp----~g~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WTCKTVL-DDGHKRSVRSVAWSP----HGRYL 76 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EEEEEec-cccchheeeeeeecC----CCcEE
Confidence 4446999999753388999999999999998875310 1112112 225667899999976 46666
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
.++.-|. ...+|....
T Consensus 77 a~aSFD~---------------------------------------------------------t~~Iw~k~~------- 92 (312)
T KOG0645|consen 77 ASASFDA---------------------------------------------------------TVVIWKKED------- 92 (312)
T ss_pred EEeeccc---------------------------------------------------------eEEEeecCC-------
Confidence 6665433 111111111
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeecccccCCccee--eCCCCCE
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
+ ..+..-.|.+|+..|.|++|+++|.+||+++ |+.|=+|..... .......+|+..|-. |||...+
T Consensus 93 ---~-----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 93 ---G-----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ---C-----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 0 1112345789999999999999999999999 999999954421 222235789999877 9999999
Q ss_pred EEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 246 FITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
|++++.|.+||+|+-. .....+..+| .+|...|++++|++.|..|++++.|++|+||.....
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl--------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------- 227 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTL--------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------- 227 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEe--------cCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------
Confidence 9999999999999984 6655444444 478889999999999999999999999999997622
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC----eeEEeeecccCCCCCeeEEEEe
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP----TVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~----~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
....|..++..+.|. +| .+|+|+.|+.|+|+--... ..-........|...|.+++|.
T Consensus 228 ----------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 228 ----------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred ----------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 112346789999999 55 7999999999999976532 1111123345688899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|. ..+.|++|+.||.|++|.+.
T Consensus 290 p~-----~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PK-----VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CC-----CCCceeecCCCceEEEEEec
Confidence 93 37899999999999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=219.68 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=215.9
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
.+.+..+.| |+|||++|++|+.||.|.+||. +++. -..++++....+..++.+|.|++|+.|+..||+|+.||.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl---rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL---RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchh---hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 445566666 9999999999999999999999 5554 366899989999999999999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
|++|+++++.+. -++. .|...|+|+.||.|+..+++++.|.+|+|.-+.+|+++..+
T Consensus 287 IKvWri~tG~Cl---------------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf- 344 (508)
T KOG0275|consen 287 IKVWRIETGQCL---------------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF- 344 (508)
T ss_pred EEEEEEecchHH---------------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-
Confidence 999999987663 1222 45677999999999999999999999999999999999544
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccc
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSN 465 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~ 465 (826)
.+|++.|+...|.+ ||.+++++++||+|++|+..+++|+.+|.... ....+.++..+..
T Consensus 345 --rGHsSyvn~a~ft~------dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PK------------ 403 (508)
T KOG0275|consen 345 --RGHSSYVNEATFTD------DGHHIISASSDGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPK------------ 403 (508)
T ss_pred --cCccccccceEEcC------CCCeEEEecCCccEEEecCcchhhhhhccCCC-CcccceeEEEcCC------------
Confidence 48999999999998 79999999999999999999999999973222 2334444444421
Q ss_pred cccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 466 VAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
..+.++|+--.+.++|.++...+ .+.+..-+- ..-.+.....++++..+-|.-.+|.+-.+
T Consensus 404 --------------npeh~iVCNrsntv~imn~qGQv---VrsfsSGkR--EgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 404 --------------NPEHFIVCNRSNTVYIMNMQGQV---VRSFSSGKR--EGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred --------------CCceEEEEcCCCeEEEEeccceE---EeeeccCCc--cCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 11235544455688888886421 112221111 12223333334778888888888888777
Q ss_pred ccCCcccccc-----ccccceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 546 SLPELSLLKE-----TSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 546 slP~L~~l~~-----~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
+.-+.++=.. -.+.++.++ |.-.-..+-+.||-+.+|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence 7766554332 233366666 3445667788899988884
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-23 Score=217.05 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=211.6
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
+++..|...|++++| +|++.+|++|..||.|.+||+.++.... . ...+..++..+.|+.
T Consensus 3 ~~~~~h~~~i~~~~~-~~~~~~l~~~~~~g~i~i~~~~~~~~~~------------~----~~~~~~~i~~~~~~~---- 61 (289)
T cd00200 3 RTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELLR------------T----LKGHTGPVRDVAASA---- 61 (289)
T ss_pred hHhcccCCCEEEEEE-cCCCCEEEEeecCcEEEEEEeeCCCcEE------------E----EecCCcceeEEEECC----
Confidence 345567789999999 5799999999999999999988741000 0 001112233333322
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
+...+++++.+|.+.+||....
T Consensus 62 ---------------------------------------------------------~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 62 ---------------------------------------------------------DGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred ---------------------------------------------------------CCCEEEEEcCCCeEEEEEcCcc-
Confidence 0123455666788888887651
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~ 242 (826)
.....+..|...|+++.|++++..+++++ ++.+.+|+.... ....+ ..|.+.+.+ ++++
T Consensus 84 ----------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 146 (289)
T cd00200 84 ----------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPD 146 (289)
T ss_pred ----------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCc
Confidence 12233567888999999999999999988 999999976632 33333 468888888 8999
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
+.++++++.||.|++||+..... +. .+..|...|+++.|+|++..+++++.||.|++||++....
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~--~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----- 211 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKC--VA--------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----- 211 (289)
T ss_pred CCEEEEEcCCCcEEEEEcccccc--ce--------eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----
Confidence 99999999999999999953331 11 1235667899999999999999999999999999984322
Q ss_pred eEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 323 FLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
+... .+...|.+++|++++.++++++.||.|++||+.++..+.... .|...|.++.|++
T Consensus 212 -----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~ 271 (289)
T cd00200 212 -----------------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSP 271 (289)
T ss_pred -----------------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECC
Confidence 2222 456689999999998888888889999999999888775443 6778999999998
Q ss_pred cccCCCCCcEEEEEECCCcEEEEE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++.+|++++.|+.|++|+
T Consensus 272 ------~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 ------DGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------CCCEEEEecCCCeEEecC
Confidence 489999999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=200.04 Aligned_cols=208 Identities=17% Similarity=0.274 Sum_probs=168.0
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC--CC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS--VP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~--~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
...+++..++.|..+.+.|+++.|++++...||+|+.. .+ ++.++ .+|+..|.+ |..+|+++.||++||++|||
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIW 110 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIW 110 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEE
Confidence 34557778899999999999999999999999999543 33 55566 889999999 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|+.....+. . -.|..+|++|..+|+...|++|..+|.|++||+..+.+.+
T Consensus 111 dlR~~~~qR----~-------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~------------------- 160 (311)
T KOG0315|consen 111 DLRSLSCQR----N-------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH------------------- 160 (311)
T ss_pred eccCcccch----h-------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc-------------------
Confidence 995543111 1 1255899999999999999999999999999999665422
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE---EeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
........+|+++...|||..|+.+...|..++|++-+..-. ....-...|...+..+.++| |+.+|+++
T Consensus 161 -~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP------d~k~lat~ 233 (311)
T KOG0315|consen 161 -ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP------DVKYLATC 233 (311)
T ss_pred -ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC------CCcEEEee
Confidence 001111356999999999999999999999999999765322 11122346888999999999 79999999
Q ss_pred ECCCcEEEEECCCC
Q 003360 416 TKDSSVLVLDSDNG 429 (826)
Q Consensus 416 s~Dg~V~iwd~~tg 429 (826)
+.|.+++||+.++-
T Consensus 234 ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF 247 (311)
T ss_pred cCCceEEEEecCCc
Confidence 99999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=215.82 Aligned_cols=278 Identities=12% Similarity=0.160 Sum_probs=206.0
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
......|.|+-.| |.--.++++..+|.+.|||..+...-+..+.++ .||...++
T Consensus 10 ~~rSdRVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~----------------~PvRa~kf--------- 63 (794)
T KOG0276|consen 10 QSRSDRVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSE----------------VPVRAAKF--------- 63 (794)
T ss_pred hccCCceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecc----------------cchhhhee---------
Confidence 3356689999985 799999999999999999988853333222111 12222111
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+ .+..-+++++.++++.+|+.++.+
T Consensus 64 --------------------------------------------i--------aRknWiv~GsDD~~IrVfnynt~e--- 88 (794)
T KOG0276|consen 64 --------------------------------------------I--------ARKNWIVTGSDDMQIRVFNYNTGE--- 88 (794)
T ss_pred --------------------------------------------e--------eccceEEEecCCceEEEEecccce---
Confidence 1 112445677777888898888742
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCC-CCC
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK-VKN 244 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~-~~~ 244 (826)
....+..|...|.|++.+|..+++++++ |-+|++|+....+.... ..+|+..|.+ |.| |.+
T Consensus 89 --------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 89 --------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred --------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 2334678999999999999999999999 88999997665554433 3789999988 666 667
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS--RVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~--~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
.+++++-|+||+||.+..+. +.++ +++|...|+||.|-+.+ .+|++|+.|.+|+|||+.+..|.
T Consensus 155 tFaS~sLDrTVKVWslgs~~--~nfT--------l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---- 220 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH--PNFT--------LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---- 220 (794)
T ss_pred ceeeeeccccEEEEEcCCCC--Ccee--------eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----
Confidence 99999999999999994333 1233 35899999999998754 79999999999999999866552
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.....|...|.++.|+|.-.++++|++||+||||+..+-+...+.. -....|++++....
T Consensus 221 -----------------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 221 -----------------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---YGLERVWCIAAHKG 280 (794)
T ss_pred -----------------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh---cCCceEEEEeecCC
Confidence 1223466779999999999999999999999999988776653332 23457888887773
Q ss_pred ccCCCCCcEEEEEECCCcEE
Q 003360 403 SLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+..+++|...|.|.
T Consensus 281 ------~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 281 ------DGKIAVGFDEGSVT 294 (794)
T ss_pred ------CCeEEEeccCCcEE
Confidence 56677777666543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=246.88 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=170.2
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
.++.++.+|.+.+||...- .....+..|...|++++|++ ++..+++++ |++|++|+.....
T Consensus 547 ~las~~~Dg~v~lWd~~~~-----------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS-----------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred EEEEEeCCCeEEEEECCCC-----------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 4556667888999987641 12334578999999999996 778899998 9999999765433
Q ss_pred eeecccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.... ..+...+.+ | ++++.+|++|+.||+|++||+..... ++. .+..|...|+++.|. ++.+|++|
T Consensus 610 ~~~~-~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~--------~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 610 SIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLC--------TMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred EEEE-EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cce--------EecCCCCCEEEEEEe-CCCEEEEE
Confidence 3222 223355666 6 56799999999999999999943321 111 124688899999997 67899999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.|++|+|||++...... ..... ..+..|...+.+++|++++.+||+|+.||.|++|+...+..+
T Consensus 679 s~D~~ikiWd~~~~~~~~-----------~~~~l----~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 679 STDNTLKLWDLSMSISGI-----------NETPL----HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred ECCCEEEEEeCCCCcccc-----------CCcce----EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 999999999997432100 01111 233456677999999999999999999999999998766544
Q ss_pred Eeeec----------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 382 YQKHI----------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 382 ~~~~~----------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
..... ...+...|.+++|++ ++.+|++|+.||.|+||++
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~------~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQFISSVCWRG------QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEecccCCcccccccCCCCcEEEEEEEcC------CCCeEEEecCCCcEEEEec
Confidence 22211 123456799999998 5899999999999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=235.65 Aligned_cols=244 Identities=16% Similarity=0.232 Sum_probs=185.9
Q ss_pred ec-ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-------------------------------------------
Q 003360 188 MP-FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV------------------------------------------- 222 (826)
Q Consensus 188 l~-~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~------------------------------------------- 222 (826)
+. .|.+.|.+++|++||++||+|+ |+.|++|....
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 45 7999999999999999999999 99999993111
Q ss_pred ------------------CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 223 ------------------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 223 ------------------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
.++.. ..+|++.|.. |+.+ ++|++++.|.|||+|++..+. +++.+ .|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--CL~~F---------~H 408 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--CLKVF---------SH 408 (712)
T ss_pred ccCCccccCCCccccccccchhh-hhccchhheecccccC-CeeEeccccccEEeecCCCcc--eeeEE---------ec
Confidence 00111 2458888888 6554 589999999999999995444 22333 48
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 283 GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
..-||||+|+| |.++|++|+-||.||||.+...+. +.....+.-||+++|.|+|+..
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V----------------------v~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV----------------------VDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCee----------------------EeehhhhhhheeEEeccCCceE
Confidence 89999999999 679999999999999999973221 2223345679999999999999
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccC-----CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++|+.+|.+++|++.+.+.....++... ....|+.++|.|. +...+++.++|..|+|+|.+.-.++..|.
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~-----~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG-----DPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC-----CCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 9999999999999999887755554322 1227999999985 45578899999999999998778887776
Q ss_pred ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccc
Q 003360 437 IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSH 500 (826)
Q Consensus 437 ~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~ 500 (826)
+..+..+.... .+..++.+||.++|+ .|+||++..
T Consensus 542 G~~n~~SQ~~A-----------------------------sfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 542 GFRNTSSQISA-----------------------------SFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccccCCcceee-----------------------------eEccCCCEEEEeecCceEEEEeCCC
Confidence 55554332111 233456677777776 899999863
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=196.32 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=194.6
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+..|.++|..+.|+-+|.+.++++ |.++++|+.....+.....+|...|.. .+.|...+++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 3345788999999999999999999988 999999976544444333889888988 7788889999999999999999
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+++. ...+.+|.+.|+.+.|+.++..+++|+.|.+|++||.+......
T Consensus 89 ~TGkv-----------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------- 137 (307)
T KOG0316|consen 89 NTGKV-----------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------- 137 (307)
T ss_pred ccCee-----------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------
Confidence 5544 22356899999999999999999999999999999999654421
Q ss_pred EEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 340 VKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 340 ~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
++. ......|.++..+ +..++.|+-||++|.||++.++.. .. -...||+++.|++ |+++.++++.|
T Consensus 138 iQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~--sD---y~g~pit~vs~s~------d~nc~La~~l~ 204 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS--SD---YFGHPITSVSFSK------DGNCSLASSLD 204 (307)
T ss_pred cchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee--hh---hcCCcceeEEecC------CCCEEEEeecc
Confidence 111 1224558888886 446999999999999999999876 22 3456999999999 79999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~s 497 (826)
+++++.|-.||+++..+.+|.+...+.-|. ..+.+..|+.|+|+ .+++|+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykldc~-----------------------------l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLDCC-----------------------------LNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeeeee-----------------------------ecccceeEEeccCCceEEEEE
Confidence 999999999999999998888764322221 12234577888776 799999
Q ss_pred cc
Q 003360 498 LS 499 (826)
Q Consensus 498 l~ 499 (826)
|-
T Consensus 256 Lv 257 (307)
T KOG0316|consen 256 LV 257 (307)
T ss_pred ec
Confidence 97
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=220.92 Aligned_cols=243 Identities=13% Similarity=0.142 Sum_probs=196.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+..+.+.|.++.|+|..+.++++. .|.+.+|+...+. ...+ .--.-+|.+ |-..-+++++|+.|..||||+..+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 345788999999999999999999 9999999876533 2223 112334444 7788889999999999999999443
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. +..|+.|.+-|+||+.+|...+++++|.|-+|++||++..-. +. ..+.
T Consensus 88 ek----------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa-----------------~~---qtfe 137 (794)
T KOG0276|consen 88 EK----------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA-----------------CE---QTFE 137 (794)
T ss_pred ee----------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee-----------------ee---eEEc
Confidence 32 445678999999999999999999999999999999984321 11 3445
Q ss_pred eccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|.-.|.+++|+| |...+|+++-|++|+||.+.++.+.+++. +|...|.++.|-+. .|.++|++|+.|.+|+
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~----gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTG----GDKPYLISGADDLTIK 210 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccC----CCcceEEecCCCceEE
Confidence 5666799999999 56789999999999999999999987775 89999999999873 2567999999999999
Q ss_pred EEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEecc
Q 003360 423 VLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLS 499 (826)
Q Consensus 423 iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~ 499 (826)
|||..|..|+.++.+|.++.+.+ .++|.=++++.|+|+ ++|||.-.
T Consensus 211 vWDyQtk~CV~TLeGHt~Nvs~v-------------------------------~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 211 VWDYQTKSCVQTLEGHTNNVSFV-------------------------------FFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred EeecchHHHHHHhhcccccceEE-------------------------------EecCCCcEEEEecCCccEEEecCc
Confidence 99999999999998888764422 233444688888775 89999765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=204.93 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=215.9
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
++.+.+.++...|+.+-+ +|+-..++++++|++|.+||..++...+.++. +...+..+.+..
T Consensus 99 ~l~~~l~g~r~~vt~v~~-hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG----------------Ht~sv~di~~~a- 160 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIF-HPSEALVVSASEDATIKVFDTETGELERSLRG----------------HTDSVFDISFDA- 160 (406)
T ss_pred Cchhhhhccccceeeeee-ccCceEEEEecCCceEEEEEccchhhhhhhhc----------------cccceeEEEEec-
Confidence 455666667778888877 58999999999999999999999722221110 001122222111
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
.|.++ +..+.+-++.+||..
T Consensus 161 ---~Gk~l---------------------------------------------------------~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 161 ---SGKYL---------------------------------------------------------ATCSSDLSAKLWDFD 180 (406)
T ss_pred ---CccEE---------------------------------------------------------EecCCccchhheeHH
Confidence 11111 122222235678877
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
+....+ ..+..|+-.|.++.|-|.|.++++++ |.+|+.|.-..........+|..-|.. ..
T Consensus 181 ~~~~c~----------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 181 TFFRCI----------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred HHHHHH----------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 632211 22468889999999999999999999 999999976554433333778887777 78
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---------------CEEEEEeCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---------------RVLVSGDQSG 305 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---------------~~Lasgs~dg 305 (826)
.||.++++|+.|.+|++|-...+.. ...+..|.-+|-|++|.|.. +++.+++.|+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~----------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQC----------KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchh----------hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 8999999999999999999944431 11134677899999998742 4899999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+|++||+.++.+. +....|...|..++|+|.|++|+++.+|++++|||++..+|+.+..
T Consensus 315 tIk~wdv~tg~cL---------------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVSTGMCL---------------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred eEEEEeccCCeEE---------------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 9999999965442 5667788889999999999999999999999999999999995554
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.|..-|+++.|.. +..++++|+-|.++++|..
T Consensus 374 ---ah~hfvt~lDfh~------~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 ---AHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---CCcceeEEEecCC------CCceEEeccccceeeeeec
Confidence 6788999999998 4789999999999999974
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=244.40 Aligned_cols=255 Identities=19% Similarity=0.087 Sum_probs=174.2
Q ss_pred CCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CC-ceEEEEEEeeceEEEeccCCccccccccc
Q 003360 481 KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GS-DVGLMLLFTSGKFEIRSLPELSLLKETSI 558 (826)
Q Consensus 481 ~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~-~~~lv~~~~~G~I~i~slP~L~~l~~~sl 558 (826)
...++++|+++.+|+|+++ .+.+.+.....+.+|.-.+.+.. .+ ..+++++..+|+|++++||+|+++...
T Consensus 723 ~~~~~~i~~e~~~~v~~~~-----~q~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~g~i~~~slp~Lre~~~~-- 795 (993)
T KOG1983|consen 723 IEVPTLICGESAIRVFSVP-----AQQCKELQLIHEAPVVGISVLDGISKPEPSLDLLDANGHISKHSLPSLREEQFK-- 795 (993)
T ss_pred cccceEEecCCccceeccc-----ccccccceeeccccceeeeeeecccCccceeeEeecCCCccceecchhhhhhcc--
Confidence 3589999999999999999 45555555555455555555555 44 799999999999999999999999842
Q ss_pred cceeecCCCCCCCccccee----ccCCCcEEEEcCCeeeeeeeecccCCccccCC----CccccCCCCcCcccccccccc
Q 003360 559 RGFVYLTPKPNSLSNTLMC----SSWDGELIMVNGNQEAFFISALRQRDFFRFLD----SACQVYSYDPTLLQEGVVSAS 630 (826)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~----~s~~G~i~~~~g~~e~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 630 (826)
+.+. |..+.......+ ++..|+..+..++.|++. .+..++.+..+.+ +++.++.+.+.+.+.-.
T Consensus 796 --v~~l-p~~~~~i~~~~~~~~g~~~~~~~~~~~s~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 867 (993)
T KOG1983|consen 796 --VLPL-PLVKNIIKNKLTAGNGFSVHKVGELAASAVERSK-KTLEQELQELTNLGDISVLGLPLLKLEIPYAPIR---- 867 (993)
T ss_pred --ccCC-cchhhhcccchhccccccccchhheecchhhhhh-ccccccccccccccccccccccccchhhhhhhhh----
Confidence 2222 222222233333 788899999999999998 8888888887777 78888888776666542
Q ss_pred ccccccccceeceeecc-CcCCCCCcccchhhHHhHHHHHhhhcCCCCCCCCcCCCCCCcccCccccccccccCCCCcCC
Q 003360 631 IVQTEKKKGIFGSVLKG-NKTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIREK 709 (826)
Q Consensus 631 ~~~~~~~~~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 709 (826)
.++++| ++++.... +.-+..||..++|.++.+-+
T Consensus 868 -----------~~~~~g~l~~g~~~~---------------------------------~~~~i~~l~~e~~~~~~~~~- 902 (993)
T KOG1983|consen 868 -----------QSDIKGVLFFGTVGC---------------------------------DPYKISELEGERISLATKYE- 902 (993)
T ss_pred -----------ccccccccccCcCCC---------------------------------Chhhhcccccccccccccce-
Confidence 344455 33331111 11234556666666664332
Q ss_pred CcccchhhhhhHHHhhhhhhhhcccchhcccccccCCcccccccccccchHHHHHhhCCCCCCcc--hHhHHHHHHHHHh
Q 003360 710 PKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYGFSHSGEP--SVAKMAESKLHEN 787 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 787 (826)
+.+ - ...+.+ .++. +++++.++ +.+..+|+++. +.+ +++.+|+++|+||
T Consensus 903 --~~~---~---------------~~~~~~---~~~~---~~~~~~~~--~~~~~~~~~a~-~~~~~~~~~~a~~~l~e~ 953 (993)
T KOG1983|consen 903 --VVP---I---------------SSGDVS---SRSS---ARAILGPP--DGEEPKYAQAS-GVSSGSAASGALQPLNER 953 (993)
T ss_pred --eec---c---------------ccccCC---cccc---cccccCCC--cccchhhcccc-cccccchhhhcchhhHhh
Confidence 111 0 001100 0111 23555554 23344555555 333 3999999999999
Q ss_pred hhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003360 788 SKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKK 824 (826)
Q Consensus 788 ~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~ 824 (826)
+|||+++|+||++|+++|++||++|||++.+++.||.
T Consensus 954 ~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~ 990 (993)
T KOG1983|consen 954 GERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKW 990 (993)
T ss_pred ccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999985
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=207.03 Aligned_cols=261 Identities=11% Similarity=0.119 Sum_probs=210.9
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+..+..|..+|+.+.|+|+-...++++ |.++++|+.....+.....+|+.+|.. |+..|++|+|++.|-++++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 3455788999999999999999999998 999999988776665555889999988 9999999999999999999998
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
..-. .+ ++ ...+|.-.|.+++|-|.+.++++++.|.+|+.|++.++-+. .
T Consensus 180 ~~~~-~c---~k-----s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv---------------------~ 229 (406)
T KOG0295|consen 180 DTFF-RC---IK-----SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV---------------------K 229 (406)
T ss_pred HHHH-HH---HH-----HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE---------------------E
Confidence 3211 11 11 12467789999999999999999999999999999865441 3
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC---------CCcE
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF---------EKNF 411 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~---------d~~~ 411 (826)
.+..|...|..++.+.||.++|+++.|.+|++|-+.++.|...+ ..|.-+|.+++|.|...+.. .+++
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccE
Confidence 34456667999999999999999999999999999999776333 47888999999998654321 2479
Q ss_pred EEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 491 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~ 491 (826)
+.+++.|++|++||+.+|.++-++.+|.+-.. .+ .++|.+.|++.|.|+
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr---~~----------------------------af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR---GV----------------------------AFSPGGKYILSCADD 355 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceee---ee----------------------------EEcCCCeEEEEEecC
Confidence 99999999999999999999999877765311 11 356678899999886
Q ss_pred -cEEEEeccccccccceeeeeee
Q 003360 492 -AACAYSLSHAVQGVKKVLYKKK 513 (826)
Q Consensus 492 -~irv~sl~~~~~g~~k~~~k~~ 513 (826)
.+|+|++. ...+.....
T Consensus 356 ktlrvwdl~-----~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLK-----NLQCMKTLE 373 (406)
T ss_pred CcEEEEEec-----cceeeeccC
Confidence 89999998 444554444
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=203.89 Aligned_cols=272 Identities=17% Similarity=0.252 Sum_probs=203.1
Q ss_pred CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeE
Q 003360 26 GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ 105 (826)
Q Consensus 26 g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~ 105 (826)
+.+|++|+.||.+++||.+... ......+..||..+.|.-.++..+ +|+.++.|. +
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~-----------------~~~~~Ght~~ik~v~~v~~n~~~~-~fvsas~Dq------t 170 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKS-----------------IKTIVGHTGPIKSVAWVIKNSSSC-LFVSASMDQ------T 170 (423)
T ss_pred CceEEEeecCCeeEEEecCCce-----------------EEEEecCCcceeeeEEEecCCccc-eEEEecCCc------e
Confidence 7899999999999999987631 011234566899999987555544 566666543 1
Q ss_pred EEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccce
Q 003360 106 IVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVM 185 (826)
Q Consensus 106 vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 185 (826)
++. +.|+......-. .
T Consensus 171 l~L-------------------------------------------------w~~~~~~~~~~~---------------~ 186 (423)
T KOG0313|consen 171 LRL-------------------------------------------------WKWNVGENKVKA---------------L 186 (423)
T ss_pred EEE-------------------------------------------------EEecCchhhhhH---------------H
Confidence 111 122222210000 0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--------------------------CceeecccccCCccee
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV--------------------------PPLLDFETKLKDGSQS 238 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~--------------------------~~~~~~~~~h~g~V~~ 238 (826)
..-.+|...|-+++..+++..+++|+ |.++.+|+... .++.. ..+|++.|.+
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt-l~GHt~~Vs~ 265 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT-LEGHTEPVSS 265 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE-ecccccceee
Confidence 01138999999999999999999999 99999996100 11222 3679999999
Q ss_pred --eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 --HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 --~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|++ ...+.+++.|.+|+.||+ +++.. ..+ ....+.+|++.+|...+|++|+.|..+++||.+++
T Consensus 266 V~w~d-~~v~yS~SwDHTIk~WDletg~~~---~~~---------~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVSWDHTIKVWDLETGGLK---STL---------TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EEEcC-CCceEeecccceEEEEEeecccce---eee---------ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 666 778999999999999999 55442 111 13368999999999999999999999999999965
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCe-eEEeeecccCCCCC
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPT-VLYQKHIASDISSG 393 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~-~l~~~~~~~~~~~~ 393 (826)
. +.... ..+..|+..|.++.|+|.. ..|++|+.|+++++||+|+.. .+|... +|...
T Consensus 333 ~---------------gs~v~---~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~---~h~DK 391 (423)
T KOG0313|consen 333 D---------------GSVVS---QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA---GHNDK 391 (423)
T ss_pred C---------------CceeE---EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec---cCCce
Confidence 2 22322 5677888899999999954 568999999999999999987 776654 88999
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|.++.|.. +..+++|+.|.+|+|+...
T Consensus 392 vl~vdW~~-------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNE-------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccC-------CceEEeccCcceEEEeccc
Confidence 99999986 8899999999999998754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=202.11 Aligned_cols=283 Identities=15% Similarity=0.207 Sum_probs=201.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
-+..++.+..-++|+..+ ...+..++.|...|+++.|+.++.+|++|. ++.+++|.......
T Consensus 78 l~aTGGgDD~AflW~~~~-----------------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDIST-----------------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred eEEecCCCceEEEEEccC-----------------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 344445555667888766 125667899999999999999999999999 99999997654332
Q ss_pred e-ecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 L-DFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~-~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
. .+...-.+-++- |||.+.+|+.|+.||+|-+|.+.. ... +.+.+|..++++=.|.|+|+.+++|.
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-----------kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-----------KVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-----------eEecCCCCCcccccccCCCceEEEEe
Confidence 2 221111122233 999999999999999999999943 331 12357889999999999999999999
Q ss_pred CCCcEEEEEeCCCCCccccc------e----------EEEeecCCCCeEEEEE----EEEe----------eccCC---e
Q 003360 303 QSGMVRIFKLKYEPHAIENS------F----------LSFTGSKKGNSHIIHS----VKVM----------KINGS---I 349 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~------~----------~~i~~s~~~~~~~~~~----~~~~----------~~~~~---V 349 (826)
.||+|++|+..+++..+... . ..+..++++..+.+.. +... .+... |
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999999884433211 1 1233344443332211 1111 11122 4
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
-++.++..-.+.|+|+-||+|.|||+...++.+.. .|..+|+.+.|.+ ..+|++++.||.|+.||.++|
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----~he~~V~~l~w~~-------t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----EHEDGVTKLKWLN-------TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheec----cCCCceEEEEEcC-------cchheeeccCceEEeeecccc
Confidence 44555556678899999999999999887766333 5788899999987 688999999999999999999
Q ss_pred ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec-CcEEEEecc
Q 003360 430 NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLS 499 (826)
Q Consensus 430 ~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se-~~irv~sl~ 499 (826)
+++.++.+|... ++.+.+. ++..+||..++ +..+||..+
T Consensus 359 ~l~~~y~GH~~~---Il~f~ls----------------------------~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMG---ILDFALS----------------------------PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchh---eeEEEEc----------------------------CCCcEEEEecCCCeEEEEecC
Confidence 999999888643 3444332 23345555555 589999875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=197.92 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=244.2
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
+.++..|..++.++.- +|+.+++|||..|-.-.+|++.++..+- .-..|+..|+.+.|+.
T Consensus 57 ~~tF~~H~~svFavsl-~P~~~l~aTGGgDD~AflW~~~~ge~~~----------------eltgHKDSVt~~~Fsh--- 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSL-HPNNNLVATGGGDDLAFLWDISTGEFAG----------------ELTGHKDSVTCCSFSH--- 116 (399)
T ss_pred eeehhhcCCceEEEEe-CCCCceEEecCCCceEEEEEccCCccee----------------EecCCCCceEEEEEcc---
Confidence 3455567778999886 5799999999999999999999872111 1235677899999987
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
+|.++..|+.+- .+.|+.. .++.... ++..++.|+.++.-- +....+++++.+|.+++|....-
T Consensus 117 -dgtlLATGdmsG----~v~v~~~--stg~~~~----~~~~e~~dieWl~WH-----p~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 117 -DGTLLATGDMSG----KVLVFKV--STGGEQW----KLDQEVEDIEWLKWH-----PRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred -CceEEEecCCCc----cEEEEEc--ccCceEE----EeecccCceEEEEec-----ccccEEEeecCCCcEEEEECCCc
Confidence 788888887633 3333333 3332222 223677888888532 33466888999999999977551
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~ 241 (826)
.....+++|..+++|-.|.|+|+.++++. |++|++|+.+.. ++..+...-.+..++ +..
T Consensus 181 -----------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 181 -----------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred -----------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 13345789999999999999999999998 999999976543 344442222223344 788
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccccc-ccCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDF-SLSG---IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~-~~h~---~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
.+..+++|+.++.+++-+. +++.. ...... ...+ ..+. ..|-.+.||..-.+.|+|+-||+|.|||+....
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv---~~~n~~-~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVV---NCNNGT-VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccceeEeccCCccEEEEccccceEE---EecCCC-CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 8899999999999999988 55442 112210 0000 1122 345555556666789999999999999998443
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
. .....|..+|+.+.|-+ ..+|++++.||.|+.||.|+|.++++.. +|..+|..
T Consensus 320 ~----------------------R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~ 373 (399)
T KOG0296|consen 320 L----------------------RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILD 373 (399)
T ss_pred h----------------------heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeE
Confidence 2 22345677899999998 5689999999999999999999997664 99999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.+| +.+.++++|.|++.+||+..
T Consensus 374 f~ls~------~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSP------QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC------CCcEEEEecCCCeEEEEecC
Confidence 99999 69999999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=196.44 Aligned_cols=201 Identities=14% Similarity=0.205 Sum_probs=168.8
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc--CCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--SVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
+.+.++.|.+.|.++.|+|+|..+++|+ |..|.+|+. ....+... .+|++.|.. |.++++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456899999999999999999999998 999999973 22233333 689999999 99999999999999999999
Q ss_pred eC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+ +++. ++ .+.+|..-|+++.-+.-+ .++++|+.||+++|||+++...
T Consensus 118 D~~tG~~---~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------------------- 167 (338)
T KOG0265|consen 118 DAETGKR---IR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------------------- 167 (338)
T ss_pred eccccee---ee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-------------------
Confidence 99 4444 12 234788888888744444 5778999999999999995433
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+++...+.+++++.|...+..+.+|.-|+.|++||++...+++... +|..+|+.+..++ ++.++.+-+
T Consensus 168 ---~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~------~gs~llsns 235 (338)
T KOG0265|consen 168 ---IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSR------YGSFLLSNS 235 (338)
T ss_pred ---hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee---cccCceeeEEecc------CCCcccccc
Confidence 3444446679999999999999999999999999999999997664 9999999999999 499999999
Q ss_pred CCCcEEEEECC
Q 003360 417 KDSSVLVLDSD 427 (826)
Q Consensus 417 ~Dg~V~iwd~~ 427 (826)
.|.++++||.+
T Consensus 236 Md~tvrvwd~r 246 (338)
T KOG0265|consen 236 MDNTVRVWDVR 246 (338)
T ss_pred ccceEEEEEec
Confidence 99999999987
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=220.25 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=192.3
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
+.+...|.+ |+++|+++++++.|+.+++|++....... + .....|...|+.++|+|+++++++|+.|++|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~---~-----~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL---L-----RELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh---h-----ccccccccceeeeEECCCCcEEEEecCCceE
Confidence 344677777 99999999999999999999993222001 1 1124688999999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+|||+... +... ..+..|...|++++|+|+|+++++|+.|++|+|||+++++++..+
T Consensus 228 riwd~~~~----------------~~~~----~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l--- 284 (456)
T KOG0266|consen 228 RIWDLKDD----------------GRNL----KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL--- 284 (456)
T ss_pred EEeeccCC----------------CeEE----EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---
Confidence 99999421 1221 334478889999999999999999999999999999999988444
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc--eEEeeeccCCCCCcceEEEEecCCCCcccCccccc
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN--MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSN 465 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~--~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~ 465 (826)
.+|..+|++++|.+ |+.+|++++.|+.|++||..++. ++..+..+.... .+.++
T Consensus 285 ~~hs~~is~~~f~~------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~----------------- 340 (456)
T KOG0266|consen 285 KGHSDGISGLAFSP------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSV----------------- 340 (456)
T ss_pred eccCCceEEEEECC------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEE-----------------
Confidence 48899999999999 69999999999999999999998 444432222221 11111
Q ss_pred cccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccccccccceeeeeeecCCC-CceeeEeeeeCCceEEEEEEeeceEE
Q 003360 466 VAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSHAVQGVKKVLYKKKFHSS-SCCWASTFYSGSDVGLMLLFTSGKFE 543 (826)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~~~~g~~k~~~k~~~~~~-~c~~~~~~~~~~~~~lv~~~~~G~I~ 543 (826)
.+++++.|+++.+++ .+++|++.. .+++........ .+|+...+....+..++..+.++.|.
T Consensus 341 -----------~fsp~~~~ll~~~~d~~~~~w~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 341 -----------QFSPNGKYLLSASLDRTLKLWDLRS-----GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred -----------EECCCCcEEEEecCCCeEEEEEccC-----CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 345666777777776 999999983 222222222212 24444444457788999999999999
Q ss_pred EeccCCccccccc
Q 003360 544 IRSLPELSLLKET 556 (826)
Q Consensus 544 i~slP~L~~l~~~ 556 (826)
++.+.++..+...
T Consensus 405 ~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 405 VWDSSSGGILQRL 417 (456)
T ss_pred EEeCCccchhhhh
Confidence 9999987776654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=213.34 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=197.8
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
+..+-+++..-+|.|.+||... .+++ -.+..|+++|..+.|+|..+.+++|+ |-.|++|+-+
T Consensus 19 P~rPwILtslHsG~IQlWDYRM-~tli----------------~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRM-GTLI----------------DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhh-hhHH----------------hhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4456678888999999999865 1111 22478999999999999999999999 7889999876
Q ss_pred CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.....-...+|-..|.. ||+...+|+++|.|.|||||+...+. ++..+ .+|.--|.|..|+|...+++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--~iavl--------tGHnHYVMcAqFhptEDlIV 151 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--CIAVL--------TGHNHYVMCAQFHPTEDLIV 151 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--eEEEE--------ecCceEEEeeccCCccceEE
Confidence 54333334899999988 99999999999999999999994443 13334 47888999999999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccc--c----ceEEEeecCC--C-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 300 SGDQSGMVRIFKLKYEPHAIE--N----SFLSFTGSKK--G-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~--~----~~~~i~~s~~--~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
|+|-|-+|||||+..-...+. . .+.....+.+ | .... -......|...|.-++|+|.-.++++|++|..|
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV-VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV-VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee-eeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999875422110 0 0000001000 0 0111 003344567789999999999999999999999
Q ss_pred EEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 371 YLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 371 ~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
++|.+.. +..+......+|...|.++-|+|. .+++++.|.|++|+|||+..-+.+.++
T Consensus 231 KlWrmne-tKaWEvDtcrgH~nnVssvlfhp~------q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 231 KLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPH------QDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEEecc-ccceeehhhhcccCCcceEEecCc------cceeEecCCCccEEEEecccccceeee
Confidence 9999854 334556666799999999999995 889999999999999999987777776
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=197.11 Aligned_cols=228 Identities=15% Similarity=0.229 Sum_probs=179.5
Q ss_pred CCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-------------------CCceeecccccCCc
Q 003360 176 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-------------------VPPLLDFETKLKDG 235 (826)
Q Consensus 176 ~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-------------------~~~~~~~~~~h~g~ 235 (826)
.+|.++.+....+..|.+++.+.+|++||.++++|+ |..|++++.. -|-+.++ ..|...
T Consensus 96 ~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~de 174 (430)
T KOG0640|consen 96 SSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDE 174 (430)
T ss_pred CCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCc
Confidence 334444555556889999999999999999999999 9999998522 0222233 568899
Q ss_pred cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 236 SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 236 V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
|.+ |+|...+|++|+.|++|+++|++...... -.+ +-....+|.+|+|+|.|.+|++|..--++++||++
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--A~K------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--AFK------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHH--HHH------HhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 998 99999999999999999999995543100 011 00122589999999999999999999999999998
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC-CC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI-SS 392 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~-~~ 392 (826)
+-++. +..+++ ..|.+.|+++.+|+.|.+.++|+.||.|++||--+++|+.++. ..| .+
T Consensus 247 T~Qcf-------vsanPd-----------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gs 306 (430)
T KOG0640|consen 247 TYQCF-------VSANPD-----------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGS 306 (430)
T ss_pred ceeEe-------eecCcc-----------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCc
Confidence 65441 222222 2347889999999999999999999999999999999984443 344 45
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
.|.+..|.. ++.++++.+.|..|++|.+.+|+++..+.+.
T Consensus 307 evcSa~Ftk------n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 307 EVCSAVFTK------NGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeEEEcc------CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 788899988 5999999999999999999999999887543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=201.13 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=178.6
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
-+++|..+.++++-.||+..-+ +.....+|-+.|.|++.+|.-+.+++++ |.++|+|+.+..
T Consensus 205 HpYlFs~gedk~VKCwDLe~nk-----------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNK-----------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred CceEEEecCCCeeEEEechhhh-----------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 3678899999999999987621 2222357889999999999999999999 999999987654
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.......+|++.|.. +.|....++||+.|++||+||+ .++.. ..+ ..|...|.+++.+|.-..||+
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~---~tl--------t~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM---ITL--------THHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee---Eee--------ecccceeeEEecCCchhhhhc
Confidence 333333899999999 7777888999999999999999 55542 222 357789999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.|. ++-|++-.+... ..+..|++-|.+|+.+.|| .+++|+++|.+.+||.+++-.
T Consensus 337 as~dn-ik~w~~p~g~f~---------------------~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 337 ASPDN-IKQWKLPEGEFL---------------------QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCcc-ceeccCCccchh---------------------hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 99884 889999754332 1234456779999999998 799999999999999998865
Q ss_pred EEeeecc-----cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 381 LYQKHIA-----SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 381 l~~~~~~-----~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
....... -.....|.+.+|... +..|++|..|.+|++|.-.
T Consensus 394 yQ~~~t~vqpGSl~sEagI~as~fDkt------g~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 394 YQRGQTIVQPGSLESEAGIFASCFDKT------GSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccccccCCccccccceeEEeeccc------CceEEeccCCcceEEEecc
Confidence 5332111 123457888899884 8999999999999999865
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=199.31 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=205.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
+..|..+|++++|+++++.+++++ ++.+.+|+............|...+.. |+++++++++++.||.|++||.....
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 468999999999999999999998 999999976543333333567788855 99999999999999999999995432
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +. .+..|...|.++.|++++.++++++.||.|++||++.... . .....
T Consensus 85 ~--~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~----~~~~~ 133 (289)
T cd00200 85 C--VR--------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------------L----TTLRG 133 (289)
T ss_pred c--eE--------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------------E----EEecc
Confidence 1 11 1235667899999999999999998899999999973221 0 22224
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
+...|++++|+|++.++++++.||.|++||++.++.+.... .+...|.++.|.+ ++..+++++.|+.|++|
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~------~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP------DGEKLLSSSSDGTIKLW 204 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECC------CcCEEEEecCCCcEEEE
Confidence 56789999999999989988889999999999887775443 5677899999998 47789999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecccccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQ 503 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~ 503 (826)
|..+++.+..+..+.. .+.++.+ .+++.++++++ ++.+++|++..
T Consensus 205 d~~~~~~~~~~~~~~~---~i~~~~~----------------------------~~~~~~~~~~~~~~~i~i~~~~~--- 250 (289)
T cd00200 205 DLSTGKCLGTLRGHEN---GVNSVAF----------------------------SPDGYLLASGSEDGTIRVWDLRT--- 250 (289)
T ss_pred ECCCCceecchhhcCC---ceEEEEE----------------------------cCCCcEEEEEcCCCcEEEEEcCC---
Confidence 9998887766533321 2233322 22345777777 88999999872
Q ss_pred ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 504 GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 504 g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.+.+...... ..... .+...+.+..++....+|.|++|
T Consensus 251 --~~~~~~~~~~-~~~i~-~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 251 --GECVQTLSGH-TNSVT-SLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred --ceeEEEcccc-CCcEE-EEEECCCCCEEEEecCCCeEEec
Confidence 2233322211 11111 11111445677888888988876
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=185.37 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=170.6
Q ss_pred eeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceee----cccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 186 LKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLD----FETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~----~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
..++.|...|..++++|- |..|++++ |+.|++|....+.-.. +..+|+..|.+ |+|.|++|++|+.|.++-|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457899999999999998 88999988 9999999776322222 23469999988 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|.-....+.++..| ++|...|.|++|+++|++||++++|..|-||....+.. ..+.
T Consensus 88 w~k~~~efecv~~l--------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE---------------fec~- 143 (312)
T KOG0645|consen 88 WKKEDGEFECVATL--------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE---------------FECI- 143 (312)
T ss_pred eecCCCceeEEeee--------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc---------------EEEE-
Confidence 99866665554444 58999999999999999999999999999999873211 1221
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CC--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GP--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..+..|...|..+.|+|...+|++++.|.+|++|+-. .. .+..++ .+|...|.++.|.+. |..|++
T Consensus 144 --aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~------G~rl~s 212 (312)
T KOG0645|consen 144 --AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNI------GSRLVS 212 (312)
T ss_pred --eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCC------CceEEE
Confidence 4455677889999999998899999999999999876 32 344333 578889999999994 899999
Q ss_pred EECCCcEEEEECC
Q 003360 415 ATKDSSVLVLDSD 427 (826)
Q Consensus 415 gs~Dg~V~iwd~~ 427 (826)
++.|++|+||-..
T Consensus 213 ~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 213 CSDDGTVSIWRLY 225 (312)
T ss_pred ecCCcceEeeeec
Confidence 9999999999966
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=230.45 Aligned_cols=286 Identities=15% Similarity=0.239 Sum_probs=193.2
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----c---eeecccccCCccee--eCC-CCCEEEEEECCCcEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----P---LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINF 257 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~---~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVri 257 (826)
..|...|++++|++++.++++|+ |+.|++|+.... . .......+...+.+ |++ .+.+|++|+.||+|++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 45888999999999999999999 999999964321 0 00011223445555 665 5789999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
||+..... +. .+..|...|++++|+| ++.+|++|+.||+|++||++.+..
T Consensus 560 Wd~~~~~~--~~--------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~------------------- 610 (793)
T PLN00181 560 WDVARSQL--VT--------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS------------------- 610 (793)
T ss_pred EECCCCeE--EE--------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-------------------
Confidence 99954431 11 2346889999999997 788999999999999999984432
Q ss_pred EEEEEEeeccCCeEEEEEc-cCCCEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMN-RNSQHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s-~~g~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+........|.++.|+ ++|.+|++|+.||.|++||++.+.. +... .+|...|.++.|.. +.+|++
T Consensus 611 ---~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~~-------~~~lvs 677 (793)
T PLN00181 611 ---IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFVD-------SSTLVS 677 (793)
T ss_pred ---EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---cCCCCCEEEEEEeC-------CCEEEE
Confidence 2222345679999995 5799999999999999999987653 3222 47888999999964 788999
Q ss_pred EECCCcEEEEECCCC------ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 415 ATKDSSVLVLDSDNG------NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg------~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
++.|++|++||+..+ ..+.++.+|... +.++ .+.+.+.+++++
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---i~~v----------------------------~~s~~~~~lasg 726 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---KNFV----------------------------GLSVSDGYIATG 726 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCC---eeEE----------------------------EEcCCCCEEEEE
Confidence 999999999999743 344444443321 1111 123344566666
Q ss_pred e-cCcEEEEecccccc------ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 489 S-EKAACAYSLSHAVQ------GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 489 s-e~~irv~sl~~~~~------g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
+ ++.++||+...... .....+..............+.-.+.+..|++...+|.|+|+.+
T Consensus 727 s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5 56899999752100 00000000000000000111111266778899999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-19 Score=197.50 Aligned_cols=499 Identities=12% Similarity=0.113 Sum_probs=308.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC-ceE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA-SRL 90 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~-g~l 90 (826)
+..+|+-+| |-|.+++.+..+|.|.+|+..++......+ .+..+ ..... |+.+- +-+.+ ..+
T Consensus 113 ~~a~v~~l~---~fGe~lia~d~~~~l~vw~~s~~~~e~~l~-----~~~~~-----~~~~~-Ital~---HP~TYLNKI 175 (910)
T KOG1539|consen 113 HGAKVHLLL---PFGEHLIAVDISNILFVWKTSSIQEELYLQ-----STFLK-----VEGDF-ITALL---HPSTYLNKI 175 (910)
T ss_pred ccceEEEEe---eecceEEEEEccCcEEEEEecccccccccc-----ceeee-----ccCCc-eeeEe---cchhheeeE
Confidence 345777777 469999999999999999988851000000 01111 11111 33221 01111 122
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
+ .|.. ...+++|.+.... +...+.+....+..+..+|. =..+.+++.+|++++++...-+
T Consensus 176 v-vGs~----~G~lql~Nvrt~K------~v~~f~~~~s~IT~ieqsPa-----LDVVaiG~~~G~ViifNlK~dk---- 235 (910)
T KOG1539|consen 176 V-VGSS----QGRLQLWNVRTGK------VVYTFQEFFSRITAIEQSPA-----LDVVAIGLENGTVIIFNLKFDK---- 235 (910)
T ss_pred E-Eeec----CCcEEEEEeccCc------EEEEecccccceeEeccCCc-----ceEEEEeccCceEEEEEcccCc----
Confidence 2 2222 1235555554443 33333444433333333321 2346788999999999886521
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--eCCCCCE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~s~~~~~ 245 (826)
..+++..-.+.|+.++|..||+.+++.+ .|.+.+|+.....+.. ....|.++|.. |-+...+
T Consensus 236 -------------il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 236 -------------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred -------------EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 2222222248999999999998887755 6899999876544443 35679899988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccc----
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIE---- 320 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~---- 320 (826)
++|++.|.+.++|=...+.-.+ ..|+.. .+|..+..||.|. .++..+.+++.|++.+.|.+.......+
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~p-R~LR~R-----~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVP-RLLRSR-----GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcc-hheeec-----cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 9999999999999662111000 113322 5799999999998 6788999999999999987754311000
Q ss_pred -------------------cceEEEeecC--------------CCCeEEEEE----------E---EEeeccCCeEEEEE
Q 003360 321 -------------------NSFLSFTGSK--------------KGNSHIIHS----------V---KVMKINGSIISLNM 354 (826)
Q Consensus 321 -------------------~~~~~i~~s~--------------~~~~~~~~~----------~---~~~~~~~~V~~l~~ 354 (826)
..+..+++.. +......|. + ++.+....+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 0111111110 111111111 0 01112356999999
Q ss_pred ccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 355 NRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 355 s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++.|++.++|+..|+|-++++.+|-...++.-...|..+|+.++.... ++.+++++.+|.+++||..+..++.+
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~------n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT------NRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC------CceEEEccCcceEEEEecCCcceeee
Confidence 999999999999999999999998776444323578999999999885 88999999999999999997776666
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeec
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKF 514 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~ 514 (826)
+... ... ..|. +....+.++++|.+-.|++|+.. .++.++..+-
T Consensus 531 l~l~--~~~--~~iv---------------------------~hr~s~l~a~~~ddf~I~vvD~~-----t~kvvR~f~g 574 (910)
T KOG1539|consen 531 LRLG--SSI--TGIV---------------------------YHRVSDLLAIALDDFSIRVVDVV-----TRKVVREFWG 574 (910)
T ss_pred eccC--CCc--ceee---------------------------eeehhhhhhhhcCceeEEEEEch-----hhhhhHHhhc
Confidence 4221 111 1111 11112356777777799999987 3333333221
Q ss_pred CCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCeeee
Q 003360 515 HSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAF 594 (826)
Q Consensus 515 ~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~ 594 (826)
+ .-......-++.+.+|+.+..|+.|++|.+|....|-.. .+. .--..+++|+|||.++..--.+..
T Consensus 575 h--~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd------~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 575 H--GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVD------SPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred c--ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecC------CcceeeEECCCCCEEEEEEecCce
Confidence 1 000111111278999999999999999999988776553 221 223566778888887776655544
Q ss_pred eeeecccCCcccc--CCCccccCCCCcCcc
Q 003360 595 FISALRQRDFFRF--LDSACQVYSYDPTLL 622 (826)
Q Consensus 595 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 622 (826)
+ .+|+....|.. ..+++..|.|..+..
T Consensus 642 I-ylWsNkslF~~vs~r~~~~~~~~~~v~l 670 (910)
T KOG1539|consen 642 I-YLWSNKSLFKSVSTRAIPADYVPSWVML 670 (910)
T ss_pred E-EEEEchhHheeccccccCcccccceeec
Confidence 4 66776654432 236666676554333
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-21 Score=193.75 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=203.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC---eEEEec-CCcEEEecc
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS---FILSSA-DEDYSLLAK 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~---~l~~~~-d~~i~~w~~ 220 (826)
...++.++=+|.+.+||...- ....+.+|.++|..+++.-..+ .+++++ |.++++|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk------------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGK------------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred CceEEEeecCCeeEEEecCCc------------------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 455677778899999998661 3455789999999777644333 377787 999999954
Q ss_pred CCCceee--c--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc---------------ccccccc
Q 003360 221 SVPPLLD--F--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK---------------QQSEKDF 279 (826)
Q Consensus 221 ~~~~~~~--~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~---------------~~~~~~~ 279 (826)
..+.... . ..+|+++|-+ ..+++..+++|+.|.+|+||+.....-..+-... ......+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 4322111 1 3489999999 7899999999999999999994111100000000 0112235
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
.+|..+|.+|.|++ ...+++++.|.+|+.||+.++.. ......+...+|+..+|...
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~----------------------~~~~~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL----------------------KSTLTTNKSLNCISYSPLSK 313 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccc----------------------eeeeecCcceeEeecccccc
Confidence 78999999999998 77899999999999999996644 22333466799999999999
Q ss_pred EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEeeecc
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIH 438 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~ 438 (826)
+||+|+.|..+++||.+++.--.......+|...|.++.|+|. +..+|++|+.|+++++||.++.+ .+..+..|
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----CceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999876433223444689999999999996 57789999999999999999877 77665555
Q ss_pred CCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 439 PKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 439 ~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
..++++....+ ...++..+.|+.+|||.-.
T Consensus 389 ---~DKvl~vdW~~----------------------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 ---NDKVLSVDWNE----------------------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ---CceEEEEeccC----------------------------CceEEeccCcceEEEeccc
Confidence 34555554332 2245555567799998654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=187.40 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=202.6
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.++.+|....+ +|+|+.||+|..|-.|++|++... +.+..++ +.|...|.-++|.. ++
T Consensus 45 gh~geI~~~~F-~P~gs~~aSgG~Dr~I~LWnv~gd-----------ceN~~~l----kgHsgAVM~l~~~~----d~-- 102 (338)
T KOG0265|consen 45 GHKGEIYTIKF-HPDGSCFASGGSDRAIVLWNVYGD-----------CENFWVL----KGHSGAVMELHGMR----DG-- 102 (338)
T ss_pred CCcceEEEEEE-CCCCCeEeecCCcceEEEEecccc-----------ccceeee----ccccceeEeeeecc----CC--
Confidence 46789999998 479999999999999999986652 1111111 13444566555543 22
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
..++..+.+..++.||..+
T Consensus 103 -------------------------------------------------------s~i~S~gtDk~v~~wD~~t------ 121 (338)
T KOG0265|consen 103 -------------------------------------------------------SHILSCGTDKTVRGWDAET------ 121 (338)
T ss_pred -------------------------------------------------------CEEEEecCCceEEEEeccc------
Confidence 2234444455666777655
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLF 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l 246 (826)
.+ .......|...|+.+.-..-|..++. ++ |+++++|+.+....... ...+-.+++ |...+.-+
T Consensus 122 -G~----------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 122 -GK----------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-FENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred -ce----------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc-cccceeEEEEEecccccce
Confidence 11 22335678888888886666666665 55 99999997664332222 122334555 88888999
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
++|+-|+.|++||+..... ++.+ .+|.++|+.|+.+|++..+.+-+.|.+|++||++.-..
T Consensus 190 ~sggIdn~ikvWd~r~~d~--~~~l--------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p--------- 250 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDG--LYTL--------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP--------- 250 (338)
T ss_pred eeccccCceeeeccccCcc--eEEe--------ecccCceeeEEeccCCCccccccccceEEEEEecccCC---------
Confidence 9999999999999943331 2334 48889999999999999999999999999999983211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
...++.+..-............+|+|+++.+..|+.|..|++||.....++|... +|.+.|.++.|.|.
T Consensus 251 ----~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp---Gh~gsvn~~~Fhp~---- 319 (338)
T KOG0265|consen 251 ----SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP---GHYGSVNEVDFHPT---- 319 (338)
T ss_pred ----CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC---CcceeEEEeeecCC----
Confidence 1122211000000012235667899999999999999999999999989987664 89999999999995
Q ss_pred CCCcEEEEEECCCcEEEE
Q 003360 407 FEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iw 424 (826)
.++|.+++.|.+|++=
T Consensus 320 --e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 --EPIILSCSSDKTIYLG 335 (338)
T ss_pred --CcEEEEeccCceeEee
Confidence 8999999999999873
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=199.23 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=184.1
Q ss_pred ccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC----CceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 182 KEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV----PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 182 ~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~----~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
.+.-..+..|...|..+.|+++|++||+++ |.+..+|.... ....++ .+|..+|.. |+||.++|++|+.|..
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHh
Confidence 334445788999999999999999999999 99999994321 123333 689999988 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC-----ccccceEEEeec
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH-----AIENSFLSFTGS 329 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~-----~~~~~~~~i~~s 329 (826)
+++||+.++... ..+. ..++..+++.+|+||+..+++|+.|+++..||+..+.. .....+..++.+
T Consensus 293 ~~lwDv~tgd~~----~~y~-----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 293 LSLWDVDTGDLR----HLYP-----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eeeccCCcchhh----hhcc-----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc
Confidence 999999444421 1111 23568999999999999999999999999999987722 112346677777
Q ss_pred CCCCeEEEEE---------------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC--C
Q 003360 330 KKGNSHIIHS---------------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS--S 392 (826)
Q Consensus 330 ~~~~~~~~~~---------------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~--~ 392 (826)
.||+...+-. ......+.+|+++++|.+++++++.-.+..+++||+....++... .+|. .
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY---~Ghkq~~ 440 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY---FGHKQGH 440 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh---hcccccc
Confidence 7776533211 112223678999999999999999999999999999977666222 2332 2
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
-+..-+|.-. +..++++|+.|+.|+||+..+|+++.++.+|...
T Consensus 441 fiIrSCFgg~-----~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 441 FIIRSCFGGG-----NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred eEEEeccCCC-----CcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 3444456543 5789999999999999999999999999888743
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=203.04 Aligned_cols=307 Identities=15% Similarity=0.191 Sum_probs=208.6
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
++.++.|-|++|+. .|.|..|++|+-|.+|++||+......-..+ ..+ -..+..+|..+.|.. .+
T Consensus 162 ~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f--------r~l---~P~E~h~i~sl~ys~---Tg 226 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDASMRSF--------RQL---QPCETHQINSLQYSV---TG 226 (641)
T ss_pred eccCCceEEEEeee-cCCCceeeeccccceEEEEecccccccchhh--------hcc---CcccccccceeeecC---CC
Confidence 45566888999997 6899999999999999999998751111000 011 112355788888864 23
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.+++..|... ...++ ++...++-+..|.-|+.|...
T Consensus 227 ~~iLvvsg~aq-------akl~D---------------------------------RdG~~~~e~~KGDQYI~Dm~n--- 263 (641)
T KOG0772|consen 227 DQILVVSGSAQ-------AKLLD---------------------------------RDGFEIVEFSKGDQYIRDMYN--- 263 (641)
T ss_pred CeEEEEecCcc-------eeEEc---------------------------------cCCceeeeeeccchhhhhhhc---
Confidence 45555555432 11110 112223444455555544443
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCC--CceeecccccCC----cc-ee
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSV--PPLLDFETKLKD----GS-QS 238 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~--~~~~~~~~~h~g----~V-~~ 238 (826)
-.+|-..++|.+|+|..+. +++++ |+++|+|+... .+...++....+ .+ .|
T Consensus 264 --------------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 264 --------------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred --------------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 2588899999999997754 45566 99999995432 223333221111 22 34
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~--~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|++++++||+|..||+|++||.......+.+.++ ..|. ..|+||.|+++|++|++=+.|+++++||++.-
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEee-------eccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 9999999999999999999998333322333344 3465 49999999999999999999999999999843
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEec------CCeEEEEecCCCeeEEeeeccc
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSD------QGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
.. ++. ...+ ...-+-+.++|||+.++|++|.. .|++.+||..+...++...+.
T Consensus 397 kk----------------pL~---~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~- 456 (641)
T KOG0772|consen 397 KK----------------PLN---VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS- 456 (641)
T ss_pred cc----------------chh---hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-
Confidence 21 110 1111 11234678899999999999864 578999999999988777653
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...|..+.|+|. =+.|++|+.||+++||=-.
T Consensus 457 --~aSvv~~~Whpk------LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 457 --TASVVRCLWHPK------LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred --CceEEEEeecch------hhheeeecCCCceEEEECc
Confidence 567888999995 6779999999999887544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=183.16 Aligned_cols=225 Identities=16% Similarity=0.242 Sum_probs=180.6
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV- 260 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~- 260 (826)
|+-|.+|+-++|.++|+.+|.+|++++ |.+..+|..-....+....+|+|.|+| ...+.+.++||++|.++++||.
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 455789999999999999999999999 999999965333444444999999999 7778899999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
+++++ ..++ .+.+|..+.|++++.+++.... .+.|.+||++...... +....
T Consensus 83 tGk~l---a~~k---------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~-----------~s~ep 139 (327)
T KOG0643|consen 83 TGKQL---ATWK---------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI-----------DSEEP 139 (327)
T ss_pred CCcEE---EEee---------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-----------cccCc
Confidence 56553 3344 3368999999999988777644 5789999998543210 11111
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. ++...+...++.+-|.|-+.++++|.+||.|..||++++..+ ......|+..|+.++|++ |..+++++
T Consensus 140 ~---~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~~~Ind~q~s~------d~T~FiT~ 208 (327)
T KOG0643|consen 140 Y---LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL--VDSDEEHSSKINDLQFSR------DRTYFITG 208 (327)
T ss_pred e---EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee--eechhhhccccccccccC------CcceEEec
Confidence 1 445555678999999999999999999999999999998766 344457888999999999 69999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCC
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPS 443 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~ 443 (826)
+.|.+-++||..+-.++.++....+.+.
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNT 236 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccc
Confidence 9999999999999999999865544433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-20 Score=199.59 Aligned_cols=529 Identities=14% Similarity=0.154 Sum_probs=293.9
Q ss_pred ccccceEEEecCCCCCEEEEEE--ecCcEEEEeCCCcccccccc------ccccccccccccCC-CCCCcCCeEEEEEee
Q 003360 12 ETKQVTSACWACPIGSKVAVGY--SNGEILIWGVPSILNLKTEE------CGTQITPICKLNLG-YKLDKIPISSLKWVY 82 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~--~DGsI~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~pI~~l~W~~ 82 (826)
..|.++|+++ +|+|+++|||- -.-.+++|++.....-.... .+....|-.++-.+ ...|.+-|....|-.
T Consensus 77 sRk~~t~vAf-S~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~ 155 (1080)
T KOG1408|consen 77 SRKPLTCVAF-SQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRV 155 (1080)
T ss_pred cCcceeEEEE-cCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhh
Confidence 4789999998 78999999997 67789999998762110001 11111222222211 123333344445522
Q ss_pred ----------------eCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC----CCceeeEEEecCCCCCCC
Q 003360 83 ----------------ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL----SEPCIDMEIISSSSDPNK 142 (826)
Q Consensus 83 ----------------~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~----~~~~~d~~~l~~~~~~~~ 142 (826)
.-.++|..|+..|.-. +..|.++....+.. .++|+- -+...+..++.-.+..+.
T Consensus 156 N~~~asnkiss~Vsav~fsEdgSYfvT~gnrH-----vk~wyl~~~~Kykd-piPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 156 NSSGASNKISSVVSAVAFSEDGSYFVTSGNRH-----VKLWYLQIQSKYKD-PIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred cccccccccceeEEEEEEccCCceeeeeeeee-----EEEEEeeccccccC-CccccchhhhccccccchhhhhhhcCcc
Confidence 1123444455444322 33444433332111 112211 122222222221111121
Q ss_pred CCCceEEEeccCccEEEecchhH-HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQI-ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~ 220 (826)
.. ..-++.+..|.|+-|....+ .++... . .....|++. ..++++.|. +++|++|+.
T Consensus 230 cA-estfait~qGhLvEFSsRRLLDKWVqc-----------------R--TTnAnCIcV--s~r~I~cgCa~g~vrlFnp 287 (1080)
T KOG1408|consen 230 CA-ESTFAITAQGHLVEFSSRRLLDKWVQC-----------------R--TTNANCICV--SSRLIACGCAKGMVRLFNP 287 (1080)
T ss_pred cc-cceEEEecccceeeechhhhhhhhhhh-----------------h--ccccceeee--ecceEEEeeccceeeecCc
Confidence 22 23477888999988876653 222200 0 112234444 457888877 999999964
Q ss_pred CCCcee-ecccc--------------c----------CCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccc
Q 003360 221 SVPPLL-DFETK--------------L----------KDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 221 ~~~~~~-~~~~~--------------h----------~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~ 274 (826)
..-.+. ++..+ | ...|.+ |++....|.....|.++.|||+..... + -+
T Consensus 288 ~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k-v---gk-- 361 (1080)
T KOG1408|consen 288 ETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK-V---GK-- 361 (1080)
T ss_pred chhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc-c---cc--
Confidence 321111 11111 1 122233 888899999999999999999943221 0 00
Q ss_pred cccccccCCCCeEEEEEeCC-----------CCEEEEEeCCCcEEEEEeCCCCCc---ccc----ceEEEeecCCCCeEE
Q 003360 275 SEKDFSLSGIPLTALYYDGT-----------SRVLVSGDQSGMVRIFKLKYEPHA---IEN----SFLSFTGSKKGNSHI 336 (826)
Q Consensus 275 ~~~~~~~h~~~V~~l~fsp~-----------~~~Lasgs~dg~V~iwd~~~~~~~---~~~----~~~~i~~s~~~~~~~ 336 (826)
...+-.|...|+.|.--|- -..|++++.|++||+|++...... +.+ ....+.+..+..+ .
T Consensus 362 -~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q-~ 439 (1080)
T KOG1408|consen 362 -CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ-I 439 (1080)
T ss_pred -eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh-h
Confidence 1112235555555554331 135899999999999999863110 000 0111111111111 0
Q ss_pred EEE----------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 337 IHS----------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 337 ~~~----------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
++. .......-.+.+++.||+|++||+|...|+++|+|+.....+..+ ..|.+.|.++.|+.. .
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~---eAHesEilcLeyS~p---~ 513 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM---EAHESEILCLEYSFP---V 513 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe---ecccceeEEEeecCc---h
Confidence 000 111222445999999999999999999999999999887666333 479999999999873 1
Q ss_pred CCCcEEEEEECCCcEEEEECCCCc-eEEeeeccCCCCCcceEEEEecCC---CCcccCcccccccccc----CCCCCC--
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIHPKKPSRALFMQILNGQ---DGLARGANLSNVAGMN----KGSPKE-- 476 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~~~~~~~~lsi~~l~~~---~~~~~~~~~~~~~~~~----~~~~~~-- 476 (826)
....+|++++.|.-|.|||....- +++++-.|. +.+.++.+.-.+ ..+.++++...+-... .+....
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS---ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~ 590 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS---SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH 590 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccc---cceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc
Confidence 125789999999999999987432 344433332 333344333211 1124455433222111 111100
Q ss_pred ------------CCCCC-CCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee---CCceEEEEEEeec
Q 003360 477 ------------NAVPK-QWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS---GSDVGLMLLFTSG 540 (826)
Q Consensus 477 ------------~~~~~-~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~---~~~~~lv~~~~~G 540 (826)
...+. ...+.+|-|+.||||++.+ .|..+..|-. .-.-...++. +.+..+++-+.|-
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-----gKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-----GKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccc-----cceeeeeccc--ccCCCceEEEEECCCccEEEEeecCC
Confidence 11223 4566778888999999984 2222211111 0000111222 6778888889999
Q ss_pred eEEEeccCCcccccccc-----ccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeec
Q 003360 541 KFEIRSLPELSLLKETS-----IRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISAL 599 (826)
Q Consensus 541 ~I~i~slP~L~~l~~~s-----l~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~ 599 (826)
.+.++.+-+.+-++... +.++-|. .+-...|+++.||-|++|--|.++.+ +..
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~~mii-~m~ 721 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPLTMII-RMV 721 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECchhHhH-HHH
Confidence 99999988888777642 2366777 57789999999999999999888554 443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=205.95 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=211.8
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCc-cccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI-LNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
.-+.+.|.+.|+++-|..-.|.+|++|+.||.|.|||+.+. ... ..+..|..||..+.|..
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l----------------rtf~gH~k~Vrd~~~s~-- 268 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL----------------RTFKGHRKPVRDASFNN-- 268 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee----------------hhhhcchhhhhhhhccc--
Confidence 34567789999999997559999999999999999998873 111 13456777888888865
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
.|+-|+++|- ++.|.+||..+
T Consensus 269 --~g~~fLS~sf---------------------------------------------------------D~~lKlwDtET 289 (503)
T KOG0282|consen 269 --CGTSFLSASF---------------------------------------------------------DRFLKLWDTET 289 (503)
T ss_pred --cCCeeeeeec---------------------------------------------------------ceeeeeecccc
Confidence 2333333332 23445666554
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--e
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--H 239 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~ 239 (826)
. .....+|. ..++|++|.|++.. +++|+ |+.|+.|+.+.+.+..-...|-+.|.. |
T Consensus 290 -------G------------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 -------G------------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred -------c------------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 0 11122333 45789999999944 44555 999999988876655544668889988 9
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
-++++.+++.+.|++|+||+...+.. +++.. ....| ...||..+|++.+++.-+.|..+.+|.....-..+
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~-----ik~i~--~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVP-----IKNIA--DPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCcc-----chhhc--chhhc--cCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 99999999999999999999965542 22211 11233 66799999999999999999999999865221100
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
+. -++..| .|.-+.+.|||||.+|++|+.||.|.+||.++-+++... ..|..+++.+
T Consensus 422 ----------kk--------K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l---kah~~~ci~v 480 (503)
T KOG0282|consen 422 ----------KK--------KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL---KAHDQPCIGV 480 (503)
T ss_pred ----------Hh--------hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc---ccCCcceEEE
Confidence 00 111112 455788999999999999999999999999998877433 4678899999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
.|.|. ....+++|+.||.|++|+
T Consensus 481 ~wHP~-----e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPV-----EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCC-----CcceeEecccCceeEecC
Confidence 99996 578899999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=214.06 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=185.5
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-Cce--------------------ee--------------------
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLF--------------------LL-------------------- 267 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~--------------------~~-------------------- 267 (826)
.|+|.|++ |+++|+|||||++||.||||.+.. +.. .+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999 999999999999999999998732 000 00
Q ss_pred ---------eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 268 ---------ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 268 ---------i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
...+.......+.+|.+.|..|+|+.+ .+|++++.|.+||||++....+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C--------------------- 402 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC--------------------- 402 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce---------------------
Confidence 000000112246788899999999976 5899999999999999986555
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
++...|+..|||++|+| |.+++++|+-||.||||++...++++-.. ...-|++++|.| ||+..++|+-
T Consensus 403 -L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~P------dGk~avIGt~ 471 (712)
T KOG0283|consen 403 -LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYSP------DGKGAVIGTF 471 (712)
T ss_pred -eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEecc------CCceEEEEEe
Confidence 88888999999999999 67899999999999999999999884333 336899999999 7999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCC-----CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKK-----PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~-----~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
+|.+++|+...-++.....++... ..++..+++.. ...+.++|.+.|..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p--------------------------~~~~~vLVTSnDSr 525 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP--------------------------GDPDEVLVTSNDSR 525 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC--------------------------CCCCeEEEecCCCc
Confidence 999999999977766654333221 11233333331 11124777888889
Q ss_pred EEEEeccccccccceeeeeeecCCCCcee-eEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKKFHSSSCCW-ASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~~~~~~c~~-~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
||||++. ..+.+.|.|-....+.. .+-+. .++.-+|+...|-.|-||.++..
T Consensus 526 IRI~d~~-----~~~lv~KfKG~~n~~SQ~~Asfs-~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 526 IRIYDGR-----DKDLVHKFKGFRNTSSQISASFS-SDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eEEEecc-----chhhhhhhcccccCCcceeeeEc-cCCCEEEEeecCceEEEEeCCCC
Confidence 9999995 33445554422122211 11111 47888889999999999987643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-19 Score=200.05 Aligned_cols=292 Identities=12% Similarity=0.084 Sum_probs=188.5
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccc-----ccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEe
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ-----QSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~-----~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~ 312 (826)
.++++..+++++.+..+..|+..+... +..+.. .....+.+|...|++++|+| ++.+|++|+.||+|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceE--EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 566777788888888888998855432 111111 01123567889999999999 7889999999999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
..+.... ...... ..+..|...|.+++|+|++ .+|++|+.||+|+|||+.+++.+... ..|.
T Consensus 106 ~~~~~~~----------~~~~~l----~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~ 168 (493)
T PTZ00421 106 PEEGLTQ----------NISDPI----VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHS 168 (493)
T ss_pred CCCcccc----------ccCcce----EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCC
Confidence 7542110 000111 3345577889999999985 68999999999999999998877444 3688
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccC
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNK 471 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~ 471 (826)
..|.+++|++ ++.+|++++.|++|++||+++++.+.++..|..... ....
T Consensus 169 ~~V~sla~sp------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~--~~~~---------------------- 218 (493)
T PTZ00421 169 DQITSLEWNL------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS--QRCL---------------------- 218 (493)
T ss_pred CceEEEEEEC------CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc--eEEE----------------------
Confidence 8999999999 699999999999999999999998887655543211 1111
Q ss_pred CCCCCCCCCCCCEEEEe-----ecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEE-eeceEEEe
Q 003360 472 GSPKENAVPKQWFVLLC-----SEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF-TSGKFEIR 545 (826)
Q Consensus 472 ~~~~~~~~~~~~~vv~~-----se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~-~~G~I~i~ 545 (826)
|.+.+.+++++ .++.|+||++... .+.+...... ..+.....+....+..|++.. .+|.|++|
T Consensus 219 ------w~~~~~~ivt~G~s~s~Dr~VklWDlr~~----~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 219 ------WAKRKDLIITLGCSKSQQRQIMLWDTRKM----ASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred ------EcCCCCeEEEEecCCCCCCeEEEEeCCCC----CCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 11222344443 2578999999732 1233222222 111111222223444454444 59999999
Q ss_pred ccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeeccc
Q 003360 546 SLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQ 601 (826)
Q Consensus 546 slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~ 601 (826)
.+.+.+++... .|.. ....+-+|+.+ ...+=...+|++++.-+..
T Consensus 288 dl~~~~~~~~~-----~~~s----~~~~~g~~~~p--k~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 288 ELMNERLTFCS-----SYSS----VEPHKGLCMMP--KWSLDTRKCEIARFYALTY 332 (493)
T ss_pred EeeCCceEEEe-----eccC----CCCCcceEecc--cccccccceeeeEEEEecC
Confidence 99887765542 2220 12234444443 2222334577776555443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=190.78 Aligned_cols=231 Identities=14% Similarity=0.212 Sum_probs=194.9
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..++.++.++.+-+||..+ .....++++|-..|..+++++-.+++++++ |+.|+.|+....
T Consensus 163 n~wf~tgs~DrtikIwDlat-----------------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLAT-----------------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ceeEEecCCCceeEEEEccc-----------------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 46677888899999999987 235678899999999999999999999999 999999987765
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.+..-..+|-.+|.| .+|.-+.|+||+.|.++||||+..+.. +.. +.+|..+|..|.+.|....+++|
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V~~--------l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--VHV--------LSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--EEE--------ecCCCCcceeEEeecCCCceEEe
Confidence 555545899999999 899999999999999999999965542 233 35899999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.|++|++||++.+... .....|+..|.+++.+|....+|+++.|. |+-|++..+..+
T Consensus 296 S~D~tvrlWDl~agkt~---------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~ 353 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTM---------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL 353 (460)
T ss_pred cCCceEEEeeeccCcee---------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence 99999999999955331 33344567799999999999999999995 799999998877
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.. .++|..-|.++.... ..++++|+..|.+.+||.++|-..+.
T Consensus 354 ~n---lsgh~~iintl~~ns-------D~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 354 QN---LSGHNAIINTLSVNS-------DGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred hc---cccccceeeeeeecc-------CceEEEcCCceEEEEEecCcCccccc
Confidence 44 468888888888765 78999999999999999998865544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=201.69 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=241.1
Q ss_pred cccceEEEecCCCCC-EEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 13 TKQVTSACWACPIGS-KVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 13 ~~~i~slcW~~p~g~-~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
..+|.+..|..-.+. .-++--.++++.++.++.. ... . ..|...-++.-..|+..|..+..+. +..++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s--~~~---~--p~~~~~~~i~~~GHR~dVRsl~vS~----d~~~~ 388 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS--GKT---S--PEADRTSNIEIGGHRSDVRSLCVSS----DSILL 388 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccC--CCC---C--ccccccceeeeccchhheeEEEeec----Cceee
Confidence 457889999853332 2444589999999988762 111 0 1122222234456777888887765 33444
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
.+|+. +.+.+|..+.....|++... . .++.... +.+.+++++...|.|.+||..+..
T Consensus 389 ~Sga~-----~SikiWn~~t~kciRTi~~~-----y-----~l~~~Fv---pgd~~Iv~G~k~Gel~vfdlaS~~----- 445 (888)
T KOG0306|consen 389 ASGAG-----ESIKIWNRDTLKCIRTITCG-----Y-----ILASKFV---PGDRYIVLGTKNGELQVFDLASAS----- 445 (888)
T ss_pred eecCC-----CcEEEEEccCcceeEEeccc-----c-----EEEEEec---CCCceEEEeccCCceEEEEeehhh-----
Confidence 44433 35677777766655554221 1 1222222 234788999999999999998732
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-------C-ceeec----ccccCCccee
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-------P-PLLDF----ETKLKDGSQS 238 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-------~-~~~~~----~~~h~g~V~~ 238 (826)
..-.++.|++.|+.++.+||+..+++|+ |.+|++|+-.. + ....+ .-.....|.|
T Consensus 446 ------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 446 ------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC 513 (888)
T ss_pred ------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE
Confidence 1223579999999999999999999999 99999994221 0 11111 1224667777
Q ss_pred --eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 --HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 --~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
++||+++|+++--|.+|+||-+..-.+ . +. +-+|.-||.||..+||+.++++||.|..|+||-+.-+.
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKF--f--ls------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKF--F--LS------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceee--e--ee------ecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 999999999999999999999843221 0 11 23788999999999999999999999999999998554
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
| | -.+..|...|.++.|-|....+.+++.||.|+-||-....++... .+|...|++
T Consensus 584 C-----------------H----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L---~~H~~ev~c 639 (888)
T KOG0306|consen 584 C-----------------H----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL---DGHHSEVWC 639 (888)
T ss_pred h-----------------h----hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee---ccchheeee
Confidence 4 2 345567888999999999999999999999999999888887444 589999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++..| +|.++++++.|.+|++|....
T Consensus 640 Lav~~------~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSP------NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEcC------CCCeEEeccCCceeEeeeccC
Confidence 99999 499999999999999999663
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=203.62 Aligned_cols=281 Identities=13% Similarity=0.196 Sum_probs=203.7
Q ss_pred cccCCccee--eCC-CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 230 TKLKDGSQS--HSK-VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 230 ~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.+|+.+|++ |.| .+.+|++|+.|+.|+||++ ..+.. ...+.+|..+|..++|+.++..|++++.|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----------LRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----------ehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 679999999 777 8999999999999999999 32221 335678999999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
.|++||.+++.+ .........++|+.|+|++ +.+++|..|+.|+-||+++++++
T Consensus 281 ~lKlwDtETG~~----------------------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--- 335 (503)
T KOG0282|consen 281 FLKLWDTETGQV----------------------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--- 335 (503)
T ss_pred eeeeeccccceE----------------------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH---
Confidence 999999997654 3333445678999999998 88999999999999999999987
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccc
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
+....|-++|..+.|.+ ++..+++.+.|++++||+.+.+-.+....-.. ..+|-++
T Consensus 336 qeYd~hLg~i~~i~F~~------~g~rFissSDdks~riWe~~~~v~ik~i~~~~-----~hsmP~~------------- 391 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFVD------EGRRFISSSDDKSVRIWENRIPVPIKNIADPE-----MHTMPCL------------- 391 (503)
T ss_pred HHHHhhhhheeeeEEcc------CCceEeeeccCccEEEEEcCCCccchhhcchh-----hccCcce-------------
Confidence 44457889999999999 59999999999999999998765554321111 1111111
Q ss_pred ccccccCCCCCCCCCCCC-CEEEEeecCcEEEEeccccccccceee-eeeecCCCCceeeEeeeeCCceEEEEEEeeceE
Q 003360 465 NVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYSLSHAVQGVKKVL-YKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKF 542 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~sl~~~~~g~~k~~-~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I 542 (826)
..+|.+ .++.-+-++.+.+|++....+-+.+-. ..+.. .+|.+. +--++.+.-|+..-++|.+
T Consensus 392 ------------~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v--aGys~~-v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 392 ------------TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV--AGYSCQ-VDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred ------------ecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec--cCceee-EEEcCCCCeEEeecCCccE
Confidence 012222 333345577888998764333232222 22221 122111 1112677777788888888
Q ss_pred EEeccCCcccccccccc-----ceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 543 EIRSLPELSLLKETSIR-----GFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 543 ~i~slP~L~~l~~~sl~-----~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
-+|..-.-+++...+.. .++|+| -...+.++++.||+|.+|.
T Consensus 457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP----~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHDQPCIGVDWHP----VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhccccCCcceEEEEecC----CCcceeEecccCceeEecC
Confidence 88877666666655433 568886 4556899999999999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=208.48 Aligned_cols=278 Identities=16% Similarity=0.193 Sum_probs=206.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
++.+...+++..+. +.++.+++ +.++++|+......... ..+|.++|++ +...+.+|++|+.|.++|+||. ++
T Consensus 204 ~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 34466778888887 56667777 89999997654443333 4899999999 5556889999999999999999 44
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ... +.+|...|.++...+ ..+++|+.|.+|++|++..+.+ +..
T Consensus 282 ~C---~~~--------l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~----------------------l~l 326 (537)
T KOG0274|consen 282 EC---THS--------LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC----------------------LNL 326 (537)
T ss_pred cE---EEE--------ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce----------------------EEE
Confidence 44 222 347888999988765 4788899999999999984433 333
Q ss_pred ee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 343 MK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 343 ~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
.. |.++|.++..+ +.++++|+.||+|+|||+.+++++.+.. +|...|+++.+.. ...+++|+.|++|
T Consensus 327 ~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~-------~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDS-------ENRLLSGSLDTTI 394 (537)
T ss_pred eccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecC-------cceEEeeeeccce
Confidence 33 89999999998 6689999999999999999999996654 7999999997765 2899999999999
Q ss_pred EEEECCCC-ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE-eecCcEEEEecc
Q 003360 422 LVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL-CSEKAACAYSLS 499 (826)
Q Consensus 422 ~iwd~~tg-~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~se~~irv~sl~ 499 (826)
++||+.++ +++.++..|..... .+.+ .+.+++. ..|+.|++|+..
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~---~l~~------------------------------~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVS---SLLL------------------------------RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred EeecCCchhhhhhhhcCCccccc---cccc------------------------------ccceeEeccccccEEEeecc
Confidence 99999999 88888766654421 1111 1234444 456789999887
Q ss_pred ccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 500 HAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 500 ~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
...+++...-.+. +. ...+. .....+++...+|.++++.+++.+++..
T Consensus 442 -----~~~~~~~~~~~~~-~~-v~~l~-~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 442 -----EGECLRTLEGRHV-GG-VSALA-LGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred -----cCceeeeeccCCc-cc-EEEee-cCcceEEEEecCCeeEEEecccCchhhh
Confidence 3444444432100 10 11111 1247788999999999999998887775
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=204.90 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=156.3
Q ss_pred eecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC--------ceeecccccCCccee--eCCCC-CEEEEEECCC
Q 003360 187 KMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP--------PLLDFETKLKDGSQS--HSKVK-NLFITGHSDG 253 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~--------~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DG 253 (826)
.+.+|...|++++|+| ++..+++++ |++|++|+.... .+..+ .+|...|.+ |+|++ ++|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 3679999999999999 788999998 999999975322 22333 679999988 99975 6999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+|+|||+..... +.. +..|...|++++|+|++.+|++|+.||+|+|||++++...
T Consensus 149 tVrIWDl~tg~~--~~~--------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v--------------- 203 (493)
T PTZ00421 149 VVNVWDVERGKA--VEV--------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV--------------- 203 (493)
T ss_pred EEEEEECCCCeE--EEE--------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE---------------
Confidence 999999954431 122 2467789999999999999999999999999999854321
Q ss_pred eEEEEEEEEeeccCC-eEEEEEccCCCEEEEEe----cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 334 SHIIHSVKVMKINGS-IISLNMNRNSQHLAVGS----DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~-V~~l~~s~~g~~lasGs----~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.....|.+. +..+.|.+++..+++++ .|+.|++||+++....+.... ......+....|++ +
T Consensus 204 ------~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~~~~~~~d~------d 270 (493)
T PTZ00421 204 ------SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSALFIPFFDE------D 270 (493)
T ss_pred ------EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCceEEEEEcC------C
Confidence 122233333 45677888877666543 589999999987653322211 12233444455666 5
Q ss_pred CcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 409 KNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 409 ~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+.+|++++ .|+.|++||+.+++++.....
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 88888887 499999999999887765433
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-19 Score=201.91 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=139.8
Q ss_pred CCcEEEeccCC-CceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe
Q 003360 212 DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 212 d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
++.+++|+... +.+..+ .+|.+.|.+ |+|+ +++|+||+.||+|+|||+. .... ...+. .....+..|...|
T Consensus 53 ~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~--~~~i~-~p~~~L~gH~~~V 128 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES--VKEIK-DPQCILKGHKKKI 128 (568)
T ss_pred eeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc--ccccc-cceEEeecCCCcE
Confidence 67899996543 333334 789999999 9996 7899999999999999994 3221 00000 0112245788999
Q ss_pred EEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 287 TALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 287 ~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
++++|+|++.. |++|+.||+|+|||++++.. +....+...|++++|+++|.+|++++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----------------------~~~i~~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----------------------AFQINMPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----------------------EEEEecCCcEEEEEECCCCCEEEEEe
Confidence 99999998875 57999999999999985432 12223456799999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC----cEEEEECCC-CceEEee
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS----SVLVLDSDN-GNMLSTN 435 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~t-g~~i~~~ 435 (826)
.|+.|+|||++++.++.+.. +|.+.+.+..+.... ...++.+|++++.|+ +|+|||+++ ++.+...
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~-fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDG-LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred cCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeee-EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 99999999999999885543 566555443322110 011578899888774 799999984 5566553
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=190.84 Aligned_cols=197 Identities=16% Similarity=0.244 Sum_probs=158.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
+..|..+|..+.|+|.+..+++ |+ |+.++.|+...........+|+..|.| ++|. +.+++||+.||+||+||+..
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 4688999999999998777666 55 677888977665553335889999999 7664 56999999999999999933
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ..+.++. |+.+|..|.|-|.+..+|+++.. .|++||+-++... . ...
T Consensus 186 ~~-~~v~eln---------hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql-----------------l---~~~ 234 (487)
T KOG0310|consen 186 LT-SRVVELN---------HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL-----------------L---TSM 234 (487)
T ss_pred CC-ceeEEec---------CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee-----------------h---hhh
Confidence 21 1234444 88899999999999999988665 7999999844221 0 233
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..|+..||||++..++..|++|+-||.|+|||+.+.++++.+. ..++|.+++.+| |++.++.|..||.+.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~------dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSP------DDQTVVIGMSNGLVS 304 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecC------CCceEEEecccceee
Confidence 3478889999999999999999999999999999999997764 567999999999 689999999999887
Q ss_pred EEE
Q 003360 423 VLD 425 (826)
Q Consensus 423 iwd 425 (826)
+-.
T Consensus 305 ~rr 307 (487)
T KOG0310|consen 305 IRR 307 (487)
T ss_pred eeh
Confidence 763
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=189.33 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=202.2
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
|.++.|.-||.=+.+ ++||++||+++.|-+..+|++.... ..++-..-..+..||.-+.|++ +
T Consensus 218 qil~~htdEVWfl~F-S~nGkyLAsaSkD~Taiiw~v~~d~-------------~~kl~~tlvgh~~~V~yi~wSP---D 280 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQF-SHNGKYLASASKDSTAIIWIVVYDV-------------HFKLKKTLVGHSQPVSYIMWSP---D 280 (519)
T ss_pred hhHhhCCCcEEEEEE-cCCCeeEeeccCCceEEEEEEecCc-------------ceeeeeeeecccCceEEEEECC---C
Confidence 445567778988887 6899999999999999999876530 0122222223556788888865 2
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
+..|+.+|-+ ..+.+||..+-+
T Consensus 281 dryLlaCg~~----------------------------------------------------------e~~~lwDv~tgd 302 (519)
T KOG0293|consen 281 DRYLLACGFD----------------------------------------------------------EVLSLWDVDTGD 302 (519)
T ss_pred CCeEEecCch----------------------------------------------------------HheeeccCCcch
Confidence 2333333332 224455544311
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
... .++ ..|.-.+++++|.||+..+++|+ |+.+..|+.........+.--.-.|.+ ..+||
T Consensus 303 ~~~-------------~y~---~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 303 LRH-------------LYP---SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred hhh-------------hcc---cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 100 011 23566789999999999999999 999999976653322211111233555 78999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
+++++...|..|++++.....- .. +.....+|++++.+.+++++++--.+..+.+||+..+...
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~d-----r~------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv----- 430 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVD-----RG------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV----- 430 (519)
T ss_pred cEEEEEecccceeeechhhhhh-----hc------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH-----
Confidence 9999999999999999844331 00 1112359999999999999999999999999999843210
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCC--eEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGS--IISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~--V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.++..|+.. |..-+|-- +..++|+||+|+.|+||+..+++++... .+|...|.+++|.
T Consensus 431 ----------------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---sGHs~~vNcVswN 491 (519)
T KOG0293|consen 431 ----------------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---SGHSKTVNCVSWN 491 (519)
T ss_pred ----------------HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---cCCcceeeEEecC
Confidence 122222221 44445543 4479999999999999999999998444 5999999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|. +...+++++.||+|+||-..
T Consensus 492 P~-----~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 492 PA-----DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CC-----CHHHhhccCCCCeEEEecCC
Confidence 97 67889999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-21 Score=191.61 Aligned_cols=233 Identities=13% Similarity=0.187 Sum_probs=180.3
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..|.|+.| |...+++|. |.+|++|+...-.......+|+|.|.|..-+.++|++|+.|.+|+|||...++. +
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~-----l 270 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP-----L 270 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCch-----h
Confidence 45777766 566788888 999999987664444445899999999777778999999999999999955542 1
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
..+-.|..+|..+.|+. .++++++.|.++.+||+...... +. . .....|...|..
T Consensus 271 -----~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i--------------t~-r---rVLvGHrAaVNv 325 (499)
T KOG0281|consen 271 -----NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI--------------TL-R---RVLVGHRAAVNV 325 (499)
T ss_pred -----hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH--------------HH-H---HHHhhhhhheee
Confidence 12345778999999974 59999999999999999743210 00 0 223456778999
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+.|+.. ++++++.|.+|++|++.++.++. ...+|...|.|++|. +.++++|++|.+|++||+..|.+
T Consensus 326 Vdfd~k--yIVsASgDRTikvW~~st~efvR---tl~gHkRGIAClQYr--------~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 326 VDFDDK--YIVSASGDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred eccccc--eEEEecCCceEEEEeccceeeeh---hhhcccccceehhcc--------CeEEEecCCCceEEEEeccccHH
Confidence 999754 89999999999999999999883 345899999988885 78999999999999999999999
Q ss_pred EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccc
Q 003360 432 LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAV 502 (826)
Q Consensus 432 i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~ 502 (826)
+..+.+|... +-++.+-+ ..+|..+.|+.|+||++....
T Consensus 393 LRvLeGHEeL---vRciRFd~-----------------------------krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 393 LRVLEGHEEL---VRCIRFDN-----------------------------KRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHHHhchHHh---hhheeecC-----------------------------ceeeeccccceEEEEeccccc
Confidence 9888777654 22333322 246666778899999998543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-21 Score=191.72 Aligned_cols=222 Identities=14% Similarity=0.197 Sum_probs=172.4
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+..+-+||.+..+. ...+.+|.+.|-|+.|. .+.+++|+ |.+|++|+.+...
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c-----------------~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLEC-----------------LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred hhhhcccccCceEEeccccHHH-----------------HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 3445667788899999887432 12367999999999874 56888888 9999999877655
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.......|...|...--...+++|++.|.+|++||+..+.-.. +. ..+.+|.++|+.+.|+. +++++++.|
T Consensus 269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it---~r----rVLvGHrAaVNvVdfd~--kyIVsASgD 339 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDIT---LR----RVLVGHRAAVNVVDFDD--KYIVSASGD 339 (499)
T ss_pred hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHH---HH----HHHhhhhhheeeecccc--ceEEEecCC
Confidence 5544478888888822234699999999999999994443100 11 11347889999999964 599999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
.++++|+..+..+ ++. ..|+..|-|+.+. |+++++|+.|.+|++||+..|.|+
T Consensus 340 RTikvW~~st~ef----------------------vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cL-- 393 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF----------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL-- 393 (499)
T ss_pred ceEEEEeccceee----------------------ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHH--
Confidence 9999999985543 222 2355668888775 789999999999999999999998
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
....+|..-|.++.|. ...+++|.-||+|+|||+.++.
T Consensus 394 -RvLeGHEeLvRciRFd--------~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 394 -RVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred -HHHhchHHhhhheeec--------CceeeeccccceEEEEeccccc
Confidence 4456999999999996 5679999999999999998763
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=206.32 Aligned_cols=264 Identities=16% Similarity=0.181 Sum_probs=205.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..++.......|.+||... .......+.+|.+.|.+++|..-+..+++|+ |.++++|+....
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~----------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNN----------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCceeEEeeccc----------------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 45567777888888998876 2223333789999999999998889999999 999999976554
Q ss_pred ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 224 PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.......+|.+.|.+..-.+.++++|+.|.+|++|+++.+.. +..+ .+|..+|++|.++ +.++++|+.
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~--l~l~--------~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC--LNLL--------RGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcce--EEEe--------ccccccEEEEEec--CCEEEEEec
Confidence 444334789999999777888999999999999999965542 1112 3588999999998 789999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC-eeEE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-TVLY 382 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~-~~l~ 382 (826)
||+|++||..+.++. .....|...|+++.+.+. ..+++|+.|++|++||++++ +|++
T Consensus 350 d~~v~VW~~~~~~cl---------------------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCL---------------------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred CceEEEEEhhhceee---------------------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 999999999855442 233457889999988875 68999999999999999999 8885
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcc
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGAN 462 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~ 462 (826)
+. .+|.+-|..+.+. +++|++++.|++|++||..+++++.++..+ ....+.++...
T Consensus 408 tl---~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~----------- 463 (537)
T KOG0274|consen 408 TL---QGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG----------- 463 (537)
T ss_pred hh---cCCcccccccccc--------cceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-----------
Confidence 44 4677777655553 688999999999999999999999887543 11222222211
Q ss_pred ccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccc
Q 003360 463 LSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
++.++..+.++.+++|++++
T Consensus 464 ------------------~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 ------------------KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ------------------cceEEEEecCCeeEEEeccc
Confidence 23577777888999999984
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=177.54 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=145.4
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeC---CCCcee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV---SCPLFL 266 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~---s~~~~~ 266 (826)
.-.|-.+-..-.+.++++++ |..|.+|..+.+.+..........-.+ .+|+|++|++++----|++|.. ..+..+
T Consensus 187 ~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 187 QVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh
Confidence 33444555667788999988 889999988765544442222222223 8999999999999999999998 222210
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe---
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM--- 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~--- 343 (826)
+...+.++.+|..+|++++|+++++.+++.+.||+.+|||..-.-.. +..+.. ++.+
T Consensus 267 -----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~------------~qDpk~---Lk~g~~p 326 (420)
T KOG2096|consen 267 -----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA------------GQDPKI---LKEGSAP 326 (420)
T ss_pred -----hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec------------CCCchH---hhcCCcc
Confidence 11123456789999999999999999999999999999998733111 110100 2221
Q ss_pred --eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 344 --KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 344 --~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+.-..|+.+|+|+.||..+.. .+.++..+.++.. -.....|...|+++.|++ +|.++++++ |..+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~--~~~e~~h~~~Is~is~~~------~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDY--PELEDIHSTTISSISYSS------DGKYIATCG-DRYV 396 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccc--hhHHHhhcCceeeEEecC------CCcEEeeec-ceee
Confidence 112334489999999988876544 6899999998877 333456889999999999 699999988 6778
Q ss_pred EEEECC
Q 003360 422 LVLDSD 427 (826)
Q Consensus 422 ~iwd~~ 427 (826)
+++--.
T Consensus 397 rv~~nt 402 (420)
T KOG2096|consen 397 RVIRNT 402 (420)
T ss_pred eeecCC
Confidence 777643
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-18 Score=177.77 Aligned_cols=470 Identities=14% Similarity=0.170 Sum_probs=287.2
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCc--------EEEEeCCCccccccccccccccccccccCCCCCCcCCeEE
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGE--------ILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISS 77 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGs--------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~ 77 (826)
|+....|.-.|.|+.- +||--.+|+|-.-|. +++||..+-.. ..+ ++ ....-|..
T Consensus 97 Qr~y~GH~ddikc~~v-HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T----------L~V----~g--~f~~GV~~ 159 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAV-HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST----------LHV----IG--FFDRGVTC 159 (626)
T ss_pred cccccCCCCceEEEee-cCCceeeccCcccccCCCcCCCeeeeccccccee----------eee----ec--ccccccee
Confidence 3444556778999997 579999998888884 89998655300 011 11 11224667
Q ss_pred EEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccE
Q 003360 78 LKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHF 157 (826)
Q Consensus 78 l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l 157 (826)
++++..++ |.++..- |.+.+..++||.+.+......++ ..++-+....+. +.++-+++....|++
T Consensus 160 vaFsk~~~--G~~l~~v--D~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FH--------Ptd~nliit~Gk~H~ 224 (626)
T KOG2106|consen 160 VAFSKING--GSLLCAV--DDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFH--------PTDPNLIITCGKGHL 224 (626)
T ss_pred eeecccCC--CceEEEe--cCCCccccchhhchhhhccCcce---eccceEEEEEec--------cCCCcEEEEeCCceE
Confidence 77765332 3333321 22336678887765554221111 111122222222 233567899999999
Q ss_pred EEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcce
Q 003360 158 YAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ 237 (826)
Q Consensus 158 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~ 237 (826)
++|+...-. +.+..-..-......|.|++|.++|+.+-.-++|.|.+|..+...+......|.|+|.
T Consensus 225 ~Fw~~~~~~-------------l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 225 YFWTLRGGS-------------LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF 291 (626)
T ss_pred EEEEccCCc-------------eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence 999765510 0000000001112679999999999986555599999998766554444458999999
Q ss_pred e--eCCCCCEEEEEECCCcEEEEeCCCCceee---------eeec---------------------ccccccccccCCCC
Q 003360 238 S--HSKVKNLFITGHSDGAINFWDVSCPLFLL---------ILSL---------------------KQQSEKDFSLSGIP 285 (826)
Q Consensus 238 ~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~---------i~~l---------------------~~~~~~~~~~h~~~ 285 (826)
+ .-.+|.+| +|+.|..|-.||-..+.+.. +..+ ...-...+.+|+..
T Consensus 292 ~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de 370 (626)
T KOG2106|consen 292 SLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE 370 (626)
T ss_pred EEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence 9 56667655 59999999999952221111 0000 00001124567789
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 286 LTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 286 V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.+.++.+|+...|++++.|++|++|+ . ... .-......++.|+.|+|.| .||+|+
T Consensus 371 lwgla~hps~~q~~T~gqdk~v~lW~-~-~k~----------------------~wt~~~~d~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL----------------------EWTKIIEDPAECADFHPSG-VVAVGT 425 (626)
T ss_pred eeeEEcCCChhheeeccCcceEEEcc-C-Cce----------------------eEEEEecCceeEeeccCcc-eEEEee
Confidence 99999999999999999999999999 2 111 1122236689999999999 899999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcc
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRA 445 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ 445 (826)
..|...|.|..+...+ +.+ .. ..+++.+.|+| +|.+|++|+.|+.|+||-...+....+..... .+
T Consensus 426 ~~G~w~V~d~e~~~lv-~~~--~d-~~~ls~v~ysp------~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~g-- 491 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLV-TIH--TD-NEQLSVVRYSP------DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SG-- 491 (626)
T ss_pred ccceEEEEecccceeE-EEE--ec-CCceEEEEEcC------CCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cC--
Confidence 9999999999986555 222 23 78999999999 69999999999999999887544332211111 11
Q ss_pred eEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccccccccceeeeeeecCCCCceeeEe
Q 003360 446 LFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSHAVQGVKKVLYKKKFHSSSCCWAST 524 (826)
Q Consensus 446 lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~ 524 (826)
-.+.-+ .|+++.+|++.-+-+ .|-.| .++...... .++.++-....|.....
T Consensus 492 s~ithL-------------------------DwS~Ds~~~~~~S~d~eiLyW-~~~~~~~~t-s~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 492 SPITHL-------------------------DWSSDSQFLVSNSGDYEILYW-KPSECKQIT-SVKDVKWATYTCTLGFE 544 (626)
T ss_pred ceeEEe-------------------------eecCCCceEEeccCceEEEEE-ccccCcccc-eecceeeeeeEEEEEEE
Confidence 111122 467777888887766 67778 443222111 13333333233433222
Q ss_pred eee-------------CCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCe
Q 003360 525 FYS-------------GSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQ 591 (826)
Q Consensus 525 ~~~-------------~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~ 591 (826)
+-. -....+++.-.+|.|++++.|--++-+.+ +.|.. .......+.|+.+-+.++-+| .
T Consensus 545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~----he~~g---hs~~vt~V~Fl~~d~~li~tg-~ 616 (626)
T KOG2106|consen 545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS----HEYGG---HSSHVTNVAFLCKDSHLISTG-K 616 (626)
T ss_pred EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc----eeecc---ccceeEEEEEeeCCceEEecC-C
Confidence 111 22445677778899999999965544432 33331 234456666775555555555 4
Q ss_pred eeee
Q 003360 592 EAFF 595 (826)
Q Consensus 592 e~~~ 595 (826)
...+
T Consensus 617 D~Si 620 (626)
T KOG2106|consen 617 DTSI 620 (626)
T ss_pred CceE
Confidence 4343
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=185.09 Aligned_cols=211 Identities=13% Similarity=0.198 Sum_probs=171.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee-c-------ccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD-F-------ETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~-~-------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
+..+.+-|..|+||+.++++|+ ||.|-+|+-..+.+.. + ..-+...|.| |+.|.+++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3457889999999999999999 9999999643222111 1 1226788888 99999999999999999999
Q ss_pred eC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 259 DV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 259 D~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+ ++.++ ..+. ..|...|+|+.|+.|+..+++++.|.+|||--++.+.+.
T Consensus 291 ri~tG~Cl---RrFd-------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L------------------- 341 (508)
T KOG0275|consen 291 RIETGQCL---RRFD-------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL------------------- 341 (508)
T ss_pred EEecchHH---HHhh-------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhH-------------------
Confidence 99 66552 1122 368899999999999999999999999999999866542
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+..|.+.|+...|.++|.++++++.||+|+||+..+..|+.++... +..-+|.++...|- +...+++|..
T Consensus 342 --KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PK-----npeh~iVCNr 413 (508)
T KOG0275|consen 342 --KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPK-----NPEHFIVCNR 413 (508)
T ss_pred --HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCC-----CCceEEEEcC
Confidence 234456778999999999999999999999999999999999776643 45667888877774 5778999999
Q ss_pred CCcEEEEECCCCceEEeeecc
Q 003360 418 DSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
..+|+|.++. |+.+.++.-.
T Consensus 414 sntv~imn~q-GQvVrsfsSG 433 (508)
T KOG0275|consen 414 SNTVYIMNMQ-GQVVRSFSSG 433 (508)
T ss_pred CCeEEEEecc-ceEEeeeccC
Confidence 9999999998 8998887433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=190.14 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=206.9
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
..+.++.|.-.|+++++-|.|-.+++|+ |-+|++|+-. .+.+..+.-.-...|.+ |++.+..|++.+..-..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3456788899999999999999999999 9999999532 23333332223344455 99999998888888899
Q ss_pred EEEeCCCCceeeeeeccc-c---cccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 256 NFWDVSCPLFLLILSLKQ-Q---SEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~-~---~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+|+|-.+-++.- ..+. + ......+|-..++|.+|+|.. ..|++++.||++|||++......
T Consensus 239 kl~DRdG~~~~e--~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q------------ 304 (641)
T KOG0772|consen 239 KLLDRDGFEIVE--FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ------------ 304 (641)
T ss_pred eEEccCCceeee--eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh------------
Confidence 999986654311 1111 0 012236788999999999976 68999999999999999843220
Q ss_pred CCCeEEEEEEEEe---eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC--CeeEEEEeecccC
Q 003360 331 KGNSHIIHSVKVM---KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS--GIVSLQFETCSLQ 405 (826)
Q Consensus 331 ~~~~~~~~~~~~~---~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~--~V~sl~f~~~~~~ 405 (826)
.++ ++.. ...-+++..+|+++|.++|.|+.||.|.+||.++..+--...+...|.. .|+||.|++
T Consensus 305 --~qV----ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~---- 374 (641)
T KOG0772|consen 305 --LQV----IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY---- 374 (641)
T ss_pred --eeE----EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc----
Confidence 011 1111 1244699999999999999999999999999876554433444455665 899999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCc-eEEeeeccCCC-CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIHPKK-PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~~~~-~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
||++|++-+.|+++++||++.-+ ++.+..+.+.. +.. -..|+|++.
T Consensus 375 --dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t------------------------------dc~FSPd~k 422 (641)
T KOG0772|consen 375 --DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT------------------------------DCCFSPDDK 422 (641)
T ss_pred --ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC------------------------------ccccCCCce
Confidence 69999999999999999998543 33332211111 000 014667777
Q ss_pred EEEEe-------ecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 484 FVLLC-------SEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 484 ~vv~~-------se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
+|+.+ ....+.+|+.. .-..++++.+...+| ....++ ++---+.+.++||.++++.=|..
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~-----t~d~v~ki~i~~aSv-v~~~Wh-pkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRM-----TLDTVYKIDISTASV-VRCLWH-PKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEEecccccCCCCCceEEEEecc-----ceeeEEEecCCCceE-EEEeec-chhhheeeecCCCceEEEECccc
Confidence 77765 23457777765 344566665542222 111111 44455677788999999877753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=162.45 Aligned_cols=308 Identities=15% Similarity=0.238 Sum_probs=214.8
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|.++++| |+|.+.|+|+..-++++--.+.-...+.......--|.+... -.+.++..|.+..|+. .|.|+.
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-r~khhkgsiyc~~ws~----~gelia 105 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-RNKHHKGSIYCTAWSP----CGELIA 105 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-eccccCccEEEEEecC----ccCeEE
Confidence 5578899995 799999999999999998766653333322222212222221 1345677899999976 678887
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.|..+. .+.++.++..+..
T Consensus 106 tgsndk----~ik~l~fn~dt~~--------------------------------------------------------- 124 (350)
T KOG0641|consen 106 TGSNDK----TIKVLPFNADTCN--------------------------------------------------------- 124 (350)
T ss_pred ecCCCc----eEEEEeccccccc---------------------------------------------------------
Confidence 777643 4444444332200
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeC----CCeEEEecCCcEEEeccC---CCceeecccccCCccee-eCCCCC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITG----NSFILSSADEDYSLLAKS---VPPLLDFETKLKDGSQS-HSKVKN 244 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~~~l~~~~d~~i~~w~~~---~~~~~~~~~~h~g~V~~-~s~~~~ 244 (826)
..-..+.+..|++.|..++|..+ +..|++++.+..++|... ...+..+ .+|+|-|.+ ++-++-
T Consensus 125 --------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilalyswn~~ 195 (350)
T KOG0641|consen 125 --------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALYSWNGA 195 (350)
T ss_pred --------ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEEEecCc
Confidence 00011234678899999998543 456777776777777433 2344444 889999999 788889
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
++++|++|.+||+||+.-+. .+..+.+.-.. --....+|.+++..|.+++|++|-.|....+||++.+..
T Consensus 196 m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~-~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------- 265 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNS--CVNTLDNDFHD-GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------- 265 (350)
T ss_pred EEEccCCCceEEEEeeeccc--eeeeccCcccC-CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-------
Confidence 99999999999999994433 22333321000 011227899999999999999999999999999995433
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe--eecccCCCCCeeEEEEeec
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ--KHIASDISSGIVSLQFETC 402 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~--~~~~~~~~~~V~sl~f~~~ 402 (826)
. .++.+|...|.|+.|+|...++++|+.|..|++-|+.+ .+... ......|...+..+.|.|.
T Consensus 266 ----------i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 266 ----------I----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred ----------e----eeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCc
Confidence 1 45667788899999999999999999999999999954 22211 2223468888888999994
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.-.+++.+.|.++.+|-+.
T Consensus 331 ------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 ------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ------cceeeeccCcceEEEeccC
Confidence 5567888999999999764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=182.26 Aligned_cols=228 Identities=18% Similarity=0.254 Sum_probs=179.2
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
.+.+..+..+.++|... ++....+++|.-.|+.+.|+++...+++++ |..|++|........
T Consensus 234 ilTGG~d~~av~~d~~s-----------------~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPS-----------------NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred ceecCCCCceEEEecch-----------------hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 34555555666766544 223345689999999999999999999999 999999965443333
Q ss_pred ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 227 DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 227 ~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
....+|.+.|.. .+|.|+||++++.||+..+.|.+.... +..... +..+..+++.+|+|||.+|.+|..|
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~------~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSD------ETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEee------ccccceeEEeeEcCCceEEeccCCC
Confidence 334789999998 899999999999999999999944432 111210 1233579999999999999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
|.|+|||+..+... .++..|.++|.+++|+.+|-+||++++|+.|++||+|.-+...++
T Consensus 369 ~~vkiwdlks~~~~---------------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNV---------------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ceEEEEEcCCcccc---------------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 99999999854321 567778999999999999999999999999999999988766555
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... ...+|.++.|... |.+|+.++.|=.|++++-.+.
T Consensus 428 ~l~--~~~~v~s~~fD~S------Gt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 428 QLD--EKKEVNSLSFDQS------GTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ecc--ccccceeEEEcCC------CCeEEeecceeEEEEEecccc
Confidence 442 2337999999984 999999998888888885543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=188.86 Aligned_cols=288 Identities=17% Similarity=0.165 Sum_probs=202.5
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
.++.|+.++..+-|. ++...|+||..|.-|.+|++....... +
T Consensus 170 ~ld~h~gev~~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~------------------------~------------ 212 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFL-RNSDTLATGGSDRIIKLWNVLGEKSEL------------------------I------------ 212 (459)
T ss_pred hhhccccccceeEEc-cCcchhhhcchhhhhhhhhcccchhhh------------------------h------------
Confidence 345678999999995 588999999999999999877641000 0
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.|.-.+|. +.. +. ..++...++..++++.+.+|+..+..
T Consensus 213 ~tLaGs~g~---------it~-----------~d-------------------~d~~~~~~iAas~d~~~r~Wnvd~~r- 252 (459)
T KOG0288|consen 213 STLAGSLGN---------ITS-----------ID-------------------FDSDNKHVIAASNDKNLRLWNVDSLR- 252 (459)
T ss_pred hhhhccCCC---------cce-----------ee-------------------ecCCCceEEeecCCCceeeeeccchh-
Confidence 111111111 000 00 11233556888889999999988721
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEE
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLF 246 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l 246 (826)
...++.+|...|+++.|......+++|+ |.+++.|+.+.........+ ...+...--....+
T Consensus 253 ----------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~~~~ 315 (459)
T KOG0288|consen 253 ----------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSISDV 315 (459)
T ss_pred ----------------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecceee
Confidence 2345789999999999988777788888 99999997654221111000 11111122225678
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
++||.|+.||+||...... .+.+ ..+ +.|++|..++++..|.+++.|.++.+.|+++....+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~--~~sv--------~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~------- 377 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADK--TRSV--------PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ------- 377 (459)
T ss_pred eecccccceEEEeccCCce--eeEe--------ecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEE-------
Confidence 9999999999999844331 1222 233 499999999999999999999999999999543211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
.++..+ .+....++.+.|||++.++|+|+.||.|+||++.++++.+..... .....|+++.|.+.
T Consensus 378 ~~sA~g----------~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-~s~~aI~s~~W~~s---- 442 (459)
T KOG0288|consen 378 TFSAEG----------FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-TSNAAITSLSWNPS---- 442 (459)
T ss_pred Eeeccc----------cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC-CCCcceEEEEEcCC----
Confidence 111111 112345899999999999999999999999999999998666532 22337999999995
Q ss_pred CCCcEEEEEECCCcEEEE
Q 003360 407 FEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iw 424 (826)
|..|++++.++.+.+|
T Consensus 443 --G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 --GSGLLSADKQKAVTLW 458 (459)
T ss_pred --CchhhcccCCcceEec
Confidence 9999999999999999
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=202.98 Aligned_cols=320 Identities=17% Similarity=0.194 Sum_probs=220.6
Q ss_pred ccccccceEEEecCCCCCEEEEEE--ecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 10 YHETKQVTSACWACPIGSKVAVGY--SNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~--~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
+++++.|.++.- +|||..+|||+ .||.+++|+...-.......... +.+.--.-..|..+|.+++|.. +
T Consensus 10 ~H~~~~IfSIdv-~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~----l~k~l~~m~~h~~sv~CVR~S~----d 80 (942)
T KOG0973|consen 10 NHNEKSIFSIDV-HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN----LPKHLCTMDDHDGSVNCVRFSP----D 80 (942)
T ss_pred ccCCeeEEEEEe-cCCceeEecCCccccccceeeccccccchhhhhhcc----cchhheeeccccCceeEEEECC----C
Confidence 345778999996 58999999999 99999999987752222111111 1111112345677899999987 7
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
|..|..|++|- ++.+|.+.... .+. +.++..|.-.+
T Consensus 81 G~~lAsGSDD~----~v~iW~~~~~~----------------------~~~----------~fgs~g~~~~v-------- 116 (942)
T KOG0973|consen 81 GSYLASGSDDR----LVMIWERAEIG----------------------SGT----------VFGSTGGAKNV-------- 116 (942)
T ss_pred CCeEeeccCcc----eEEEeeecccC----------------------Ccc----------ccccccccccc--------
Confidence 88888888853 44455443200 000 00111111101
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~ 244 (826)
-.......+..|+..|..++|+|++.++++++ |++|.+|+...-.......+|.+-|-. |.|-|+
T Consensus 117 ------------E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 117 ------------ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK 184 (942)
T ss_pred ------------ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC
Confidence 01123345678999999999999999999999 999999987654444445789998877 999999
Q ss_pred EEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCcc
Q 003360 245 LFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAI 319 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~ 319 (826)
+|||-+.|++|+||+. .... .+.+...-.. ..-..-+.-++|+|||.+|++...- -++.|.+-.
T Consensus 185 y~ASqsdDrtikvwrt~dw~i---~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~------ 253 (942)
T KOG0973|consen 185 YFASQSDDRTLKVWRTSDWGI---EKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG------ 253 (942)
T ss_pred eeeeecCCceEEEEEccccee---eEeeccchhh--CCCcceeeecccCCCcCeecchhhccCCcceeEEEecC------
Confidence 9999999999999997 3222 1222111000 1112467899999999999987431 134443322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-------------C----CEEEEEecCCeEEEEecCCCeeEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-------------S----QHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-------------g----~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
+-... ..+..|.++++++.|+|. + -.+|+|+.|++|.||....++.++
T Consensus 254 ------------tWk~~---~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 254 ------------TWKVD---KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ------------Cceee---eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 11111 566778889999999872 1 168999999999999998888885
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
..+ .-.+..|..+.|+| ||-.|+++|.||+|.++....
T Consensus 319 vi~--~lf~~SI~DmsWsp------dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 319 VIH--NLFNKSIVDMSWSP------DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhh--hhhcCceeeeeEcC------CCCeEEEEecCCeEEEEEcch
Confidence 443 34567899999999 799999999999999998763
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=195.20 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=147.4
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCC---------ceeecccccCCccee--eCCCCCE-EEEEE
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVP---------PLLDFETKLKDGSQS--HSKVKNL-FITGH 250 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~---------~~~~~~~~h~g~V~~--~s~~~~~-l~Tgs 250 (826)
...+..|...|++++|+|+ +..+++|+ |++|++|+.... +...+ .+|.+.|.+ |+|++.. |+||+
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEe
Confidence 3457899999999999997 78889988 999999975421 11122 578999988 9998875 57999
Q ss_pred CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 251 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
.||+|+|||+..... +..+. |...|++++|+|++.+|++++.|+.|+|||++++...
T Consensus 146 ~DgtIrIWDl~tg~~--~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------------ 202 (568)
T PTZ00420 146 FDSFVNIWDIENEKR--AFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------------ 202 (568)
T ss_pred CCCeEEEEECCCCcE--EEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------------
Confidence 999999999954442 12221 3468999999999999999999999999999854321
Q ss_pred CCCeEEEEEEEEeeccCCe-----EEEEEccCCCEEEEEecCC----eEEEEecCC-CeeEEeeecccCCCCCeeEEEEe
Q 003360 331 KGNSHIIHSVKVMKINGSI-----ISLNMNRNSQHLAVGSDQG----YVYLLDTEG-PTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V-----~~l~~s~~g~~lasGs~dG----~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
..+..|.+.+ ....|++++.++++++.|+ +|+|||++. ...+..... ..+.+.+... |.
T Consensus 203 ---------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~-~D 271 (568)
T PTZ00420 203 ---------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPH-YD 271 (568)
T ss_pred ---------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEe-ee
Confidence 1122333332 3345668888888877664 799999985 445533322 2222222222 22
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+. ++.++++|+.|++|++|+...+.
T Consensus 272 ~~-----tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 272 ES-----TGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CC-----CCCEEEEEECCCeEEEEEccCCc
Confidence 21 47889999999999999998764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=184.73 Aligned_cols=244 Identities=12% Similarity=0.160 Sum_probs=187.0
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
=++++.+-.+.+|+.......- .+.--...|..+.|-.||+.+++|. .|.|++++.+.....
T Consensus 41 d~aVt~S~rvqly~~~~~~~~k-----------------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 41 DFAVTSSVRVQLYSSVTRSVRK-----------------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ceEEecccEEEEEecchhhhhh-----------------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3677778888888876632110 0122335688999999999999998 899999985543333
Q ss_pred ecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEe
Q 003360 227 DFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGD 302 (826)
Q Consensus 227 ~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs 302 (826)
.....|+..|.. |+|.+ ..+++|+.|+.+++||+++... .. ++.+|.+.|.|.+|+|... ++++|+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~--------~l~~htDYVR~g~~~~~~~hivvtGs 173 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA--------ELSGHTDYVRCGDISPANDHIVVTGS 173 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE--------EecCCcceeEeeccccCCCeEEEecC
Confidence 334789999887 88755 5888999999999999976652 11 2357999999999999765 899999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.||+|++||.+.... . +....|..+|..+.+-|.|.++|+++.+ .|+|||+.+|..+.
T Consensus 174 YDg~vrl~DtR~~~~----------------~-----v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLTS----------------R-----VVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLL 231 (487)
T ss_pred CCceEEEEEeccCCc----------------e-----eEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceeh
Confidence 999999999984321 1 5667788899999999999999988766 69999998555442
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEec
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILN 452 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~ 452 (826)
.. ...|...|||+.+.. ++..|++|+-|+.|++||..+-+.+..+ ..++.+++|...+
T Consensus 232 ~~--~~~H~KtVTcL~l~s------~~~rLlS~sLD~~VKVfd~t~~Kvv~s~----~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 232 TS--MFNHNKTVTCLRLAS------DSTRLLSGSLDRHVKVFDTTNYKVVHSW----KYPGPVLSIAVSP 289 (487)
T ss_pred hh--hhcccceEEEEEeec------CCceEeecccccceEEEEccceEEEEee----ecccceeeEEecC
Confidence 22 235889999999998 5899999999999999998777777654 3456777776653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=193.96 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=130.2
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEE--eCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSG--DQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasg--s~d 304 (826)
.+|...|.. |+++++++|+|+.|+.+.|||...... ...+..|.++|.+++|||- ..+||+| +.|
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----------KFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCccc----------cEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 568888877 999999999999999999999944432 1224578999999999995 5788886 568
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE--EecCCeEEEEecCCCeeEE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV--GSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las--Gs~dG~V~vwD~~~~~~l~ 382 (826)
+.|++||..++.. +......++|++|.|++.++-+++ |+.+..|.||++.+.+.+.
T Consensus 368 ~~i~fwn~~~g~~----------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 368 RCIKFWNTNTGAR----------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred cEEEEEEcCCCcE----------------------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 9999999986544 334444778999999999865554 6778899999998877663
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+ .+|...|..++++| |+..+++|+.|.++++|++-..
T Consensus 426 ~l---~gH~~RVl~la~SP------dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 EL---LGHTSRVLYLALSP------DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ee---cCCcceeEEEEECC------CCCEEEEecccCcEEeccccCC
Confidence 33 58999999999999 6999999999999999998753
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=178.60 Aligned_cols=209 Identities=20% Similarity=0.213 Sum_probs=170.1
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+.++.+...+..+.+++|+ |..+.+++...........+|+-.|.. ++++...+++++.|-.||||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 6788888888778889998 889999987766666555899999988 999999999999999999999822210
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~ 348 (826)
......|..+|+.+..+|.+.+|++++.||+..+.|++.+. +.. .... ...-.
T Consensus 296 ------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-----------------~lt---~vs~~~s~v~ 349 (506)
T KOG0289|consen 296 ------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-----------------QLT---VVSDETSDVE 349 (506)
T ss_pred ------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-----------------EEE---EEeeccccce
Confidence 11134688999999999999999999999999999998443 322 1111 12335
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+++.+|+|||.++++|..||.|+|||+..+..+..+ .+|.++|+.+.|+. +|-+|++++.|+.|++||++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F---pght~~vk~i~FsE------NGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF---PGHTGPVKAISFSE------NGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccC---CCCCCceeEEEecc------CceEEEEEecCCeEEEEEehh
Confidence 999999999999999999999999999999877444 37999999999998 599999999999999999997
Q ss_pred CceEEeeeccCC
Q 003360 429 GNMLSTNLIHPK 440 (826)
Q Consensus 429 g~~i~~~~~~~~ 440 (826)
-+...++....+
T Consensus 421 l~n~kt~~l~~~ 432 (506)
T KOG0289|consen 421 LKNFKTIQLDEK 432 (506)
T ss_pred hcccceeecccc
Confidence 776666644443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=171.77 Aligned_cols=227 Identities=16% Similarity=0.210 Sum_probs=175.0
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~ 222 (826)
...+++...+|.|.+||+.. +..+...+..|...|..+.+++..+. +++++ |++|++|....
T Consensus 73 e~~~~~a~GDGSLrl~d~~~----------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTM----------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceEEEEecCceEEEeccCC----------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 45678889999999999655 11223346789999999999986654 45567 99999996554
Q ss_pred C-ceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCC-CC
Q 003360 223 P-PLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SR 296 (826)
Q Consensus 223 ~-~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~ 296 (826)
+ .+.++ .+|..-|.. |+| .++++++++.||+.++||+. .+..+. +..|...|.|+.|+.- ..
T Consensus 137 ~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-----------i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 137 PNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-----------IEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-----------EEeccceeEeecccccCCc
Confidence 4 34455 889998888 887 57799999999999999993 222111 3468889999999984 57
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~ 375 (826)
.|++|+.|+.|+.||++.-.. +. .....|.-.|+.++|||.. ..||+++.|-++||||.
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~----------------pl----~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRT----------------PL----FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEecCCCceEEEEehhhccc----------------cc----eeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 899999999999999984322 11 2334455679999999954 57899999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
..+.-. ......|..-|..+.|++. +..++++++.|+.++||+.
T Consensus 265 ~~~ds~--~e~~~~HtEFv~g~Dws~~-----~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHHTEFVCGLDWSLF-----DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhccceEEeccccccc-----cCceeeecccccceeeecc
Confidence 855443 2333578888889999986 6889999999999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=173.88 Aligned_cols=233 Identities=11% Similarity=0.160 Sum_probs=165.5
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecC-CcEEEeccCCC-
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSAD-EDYSLLAKSVP- 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d-~~i~~w~~~~~- 223 (826)
..++.++.++.+-+||...-.. + ..+..-.-..+|.+++|+|.|.+++.|.| -++++|+....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--------------K-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--------------K-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--------------H-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 4456667778888888654110 0 00001112247899999999999999995 58999976542
Q ss_pred ceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCC-CCeEEEEEeCCCCE
Q 003360 224 PLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRV 297 (826)
Q Consensus 224 ~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~ 297 (826)
.+... ...|+++|++ +++.+++++||+.||.|||||- +++. +.++. ..|+ ..|.+..|..++++
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC---v~t~~-------~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC---VRTIG-------NAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH---HHHHH-------hhcCCceeeeEEEccCCeE
Confidence 22222 3569999999 9999999999999999999998 6665 23333 3565 78999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecC
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE 376 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~ 376 (826)
+++.+.|..|++|.+.++.... .+..-|.. .-...-+...|+....+++.-.+ .+.+.-||.+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~-------~YtGAg~t---------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLK-------EYTGAGTT---------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred EeecCCcceeeeeeecCCceEE-------EEecCCcc---------cchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 9999999999999998764410 00000000 00011233456666666666553 5678899999
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+...+ ..+..+|++++..+.-+|. ..-+++|+.|-.+++|-.+
T Consensus 384 tadr~--~l~slgHn~a~R~i~HSP~------~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 384 TADRV--ALLSLGHNGAVRWIVHSPV------EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred chhhh--hhcccCCCCCceEEEeCCC------CCceeeecccceeeeeeec
Confidence 88765 3344689999999999995 8889999999999999754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=172.48 Aligned_cols=281 Identities=16% Similarity=0.155 Sum_probs=204.3
Q ss_pred cceeeecccCCCEEEEEEee---CCCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 183 EVMLKMPFLDSSITAMKLIT---GNSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~---~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
+.|++..+|.-+|-.++|+| +|-+|++++ |+.-.+-+..+ .|+.+| .+|+|.|++ ...+-..-++++.|=+-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchhhhhhhhcccchh
Confidence 35677889999999999976 566788888 88755554433 467777 899999999 66666788999999999
Q ss_pred EEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 256 NFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 256 riWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
++||+ ++.++ ..+. |.--|.+++|+.|+..|++|+.+..+||||++..... +
T Consensus 84 kvw~a~tgdel---hsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---------------p 136 (334)
T KOG0278|consen 84 KVWDAVTGDEL---HSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---------------P 136 (334)
T ss_pred hhhhhhhhhhh---hhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---------------c
Confidence 99999 77773 2222 5568999999999999999999999999999854321 1
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..+..|.+.|..+-|....+.+++.++|++||+||.++++.+.+.. ...+|+++..++ |+.+| +
T Consensus 137 -----~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~------dG~il-T 200 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQ------DGRIL-T 200 (334)
T ss_pred -----hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeecc------CCCEE-E
Confidence 4456678889999999888889999999999999999999996664 456899999998 46554 4
Q ss_pred EECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cE
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AA 493 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~i 493 (826)
-...+.|++||..+-..+..+.+-.+..+ .. -+|+..++|+..++ .+
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P~nV~S-----AS---------------------------L~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMPCNVES-----AS---------------------------LHPKKEFFVAGGEDFKV 248 (334)
T ss_pred EecCceeEEeccccccceeeccCcccccc-----cc---------------------------ccCCCceEEecCcceEE
Confidence 55567899999998888877532222111 11 12333455554444 57
Q ss_pred EEEecccc------ccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcc
Q 003360 494 CAYSLSHA------VQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELS 551 (826)
Q Consensus 494 rv~sl~~~------~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~ 551 (826)
+.|+..+- .+|+...++.++|. +.+..-+....||.|++|-.-..+
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFS------------PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFS------------PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEEC------------CCCceeeccCCCceEEEEEecCCC
Confidence 77776531 23333344444443 556666777889999998654333
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=189.12 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=194.6
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
+...+++.++.+|.|.+|+...... . + ...+..++..|..-|..+...-+++.+++++ |-+|++|+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~----~-----~--s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSN----E-----P--STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred CCCceEEecCCCceEEEeccccccC----C-----c--ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 3445899999999999998876310 1 1 1224566788999999999999999999988 9999999765
Q ss_pred CC--ceeecccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccc-cCCCCeEEEEEeCCC
Q 003360 222 VP--PLLDFETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS-LSGIPLTALYYDGTS 295 (826)
Q Consensus 222 ~~--~~~~~~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~-~h~~~V~~l~fsp~~ 295 (826)
.. ........|+..|.| . .++..++|+|+-|+.|.+||+....-.++....+-...... ++..+|.+++..+.+
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 43 222224679999999 4 77889999999999999999943321111222222122222 666899999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
..+++|+..+.+++||.++.... ++...|...|.+|-.++||+.+++|+.||+|++||+
T Consensus 184 t~ivsGgtek~lr~wDprt~~ki---------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKI---------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred eEEEecCcccceEEeccccccce---------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 99999999999999999865431 666688889999999999999999999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+..|+++.. .|...|+++..++ +=.++++|+.||.|..=|+++.
T Consensus 243 gqQrCl~T~~---vH~e~VWaL~~~~------sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYI---VHKEGVWALQSSP------SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEE---eccCceEEEeeCC------CcceEEecCCCCcEEecccCCc
Confidence 9999997765 5677899999987 4688999999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=171.76 Aligned_cols=229 Identities=14% Similarity=0.191 Sum_probs=181.8
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.-++.+|.+.|+.+.+..+-...+++. |=+.++|+.-.. .+..| .|+.-|.+ |+.|.++|+||+.+..+||+|+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 345689999999999988888777777 889999976443 34444 46666655 9999999999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc----cccceEEEeecCCCCeEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA----IENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~----~~~~~~~i~~s~~~~~~~ 336 (826)
..+... ..++.+|...|..+-||.....+++++.|++||+||.+++... ....+.++..+.+|..+.
T Consensus 130 n~p~Ap---------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 130 NRPKAP---------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred cCCCCC---------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE
Confidence 555421 2345689999999999999999999999999999999988432 223445555556654433
Q ss_pred E--------EE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 337 I--------HS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 337 ~--------~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
+ +. ++....+..|.+...+|+..++++|++|+.++.||+.++.-+-. ...+|.++|.|+.|+|
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSP- 277 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSP- 277 (334)
T ss_pred EecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECC-
Confidence 2 11 44455577799999999999999999999999999999987732 2468999999999999
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
||...++|+.||+|++|....++.-
T Consensus 278 -----dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 -----DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred -----CCceeeccCCCceEEEEEecCCCch
Confidence 6999999999999999998866543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=185.85 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=150.0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+.+|.+.|+|++...++. +++|+ |.++++|..+. .... ..+|+..|++ +-|.+ .++||+.|.+||+|.. +
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~ 169 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-G 169 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecchh-hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC-C
Confidence 34789999999999888877 88899 99999996543 1111 3789999999 45555 8999999999999997 2
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ...|.+|.+-|+.|++-+++ .|++++.||.|++|++... .. +..
T Consensus 170 ~~-----------l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge------------------~l----~~~ 215 (745)
T KOG0301|consen 170 TL-----------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE------------------VL----LEM 215 (745)
T ss_pred ch-----------hhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc------------------ee----eee
Confidence 22 22456899999999998875 5889999999999999521 11 455
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..|...|.+++...+++.++++++|++++||+.. .|...... ....|+++.+-+ ..-+++|++||.|+
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~-------NgDIvvg~SDG~Vr 283 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLL-------NGDIVVGGSDGRVR 283 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEee-------CCCEEEeccCceEE
Confidence 5677789999988888899999999999999986 55544432 233677777776 34488999999999
Q ss_pred EEECCC
Q 003360 423 VLDSDN 428 (826)
Q Consensus 423 iwd~~t 428 (826)
||....
T Consensus 284 VfT~~k 289 (745)
T KOG0301|consen 284 VFTVDK 289 (745)
T ss_pred EEEecc
Confidence 999773
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-17 Score=178.75 Aligned_cols=413 Identities=11% Similarity=0.118 Sum_probs=256.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccc--------ccccccccccCCCCCCcCC-eEEEEEeee
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG--------TQITPICKLNLGYKLDKIP-ISSLKWVYA 83 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p-I~~l~W~~~ 83 (826)
.....|+|- +..+|++|..+|.|++++..+-.-.-+...+ +...+-.+ .-.+...+-| .+.+.+...
T Consensus 260 TTnAnCIcV---s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~-~s~~~~a~fPD~IA~~Fdet 335 (1080)
T KOG1408|consen 260 TTNANCICV---SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPK-NSESSPAIFPDAIACQFDET 335 (1080)
T ss_pred ccccceeee---ecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccc-ccccCcccCCceeEEEecCC
Confidence 335567774 5889999999999999999886222221111 01111111 1111111222 122222211
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCC---CCCCCCCCceEEEeccCccEEEe
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS---SDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~---~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
+ +-...||+.. .+.||.+...+.....-.-+.....+-|+..+|-. +....-....++..+++|.|.+|
T Consensus 336 ~--~klscVYndh------SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 336 T--DKLSCVYNDH------SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred C--ceEEEEEcCc------eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 1 1112233322 34555554433322222334444555566666521 11111223346788889999999
Q ss_pred cchhH-----------HHHHhhcc--CCC--------CCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEe
Q 003360 161 DDCQI-----------ERYLLQYQ--SRS--------PPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLL 218 (826)
Q Consensus 161 d~~~i-----------~~~~~~~~--~~~--------~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w 218 (826)
|.... +.-++.-+ ... .+.+.+. -...-...-.|.+++.+|++++|++|. -|.+++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka-~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKA-LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCccccc-chhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 87541 11000000 000 0000000 001111223589999999999999998 8999999
Q ss_pred ccCCCceeecccccCCccee--eC-C--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 219 AKSVPPLLDFETKLKDGSQS--HS-K--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 219 ~~~~~~~~~~~~~h~g~V~~--~s-~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
+...-....+...|...|.| ++ | ..++||+|+.|.-|.|+|+..... + ...+..|...|++|.|..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l--------~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-L--------VQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-h--------hhhhcccccceeEEEEee
Confidence 76654444445789999999 43 2 356999999999999999943321 1 334568999999999988
Q ss_pred CC--CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEE
Q 003360 294 TS--RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVY 371 (826)
Q Consensus 294 ~~--~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~ 371 (826)
.+ ..+++++.|..+ +|+...... ++.... +......+..+..|+..|..+++++++.|..|+
T Consensus 558 ~gln~~MiscGADksi-mFr~~qk~~-------------~g~~f~--r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSI-MFRVNQKAS-------------SGRLFP--RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred cCCceEEEeccCchhh-heehhcccc-------------Cceecc--ccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 87 789999999876 445432111 110000 000011155689999999999999999999999
Q ss_pred EEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEe
Q 003360 372 LLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL 451 (826)
Q Consensus 372 vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l 451 (826)
|||+.+++....+.-..+|.+....+...|. +.||++..+|.++.++|..+|+++.+..+|..... -+.++
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPS------giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT---G~kF~ 692 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPS------GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT---GVKFL 692 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCC------ccEEEEeecCCceEEEEeccchhhhhhcCcchhee---eeeec
Confidence 9999999988777766677778888999984 99999999999999999999999988777765322 22222
Q ss_pred cCCCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEeccc
Q 003360 452 NGQDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~sl~~ 500 (826)
++ ..++-+.+|+.|.||.|++
T Consensus 693 ----------------------------nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 ----------------------------NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------------------------ccchhheeecCCceEEEEECch
Confidence 22 3678888899999999985
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=180.90 Aligned_cols=223 Identities=18% Similarity=0.195 Sum_probs=163.2
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK- 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~- 220 (826)
+...+++.++-.|.||+|...+= . ....+..|-.+|||+.|+-|+.++++|+ |+.|.+|..
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG----------------~-LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSG----------------I-LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred CCceEEEeecccCcEEEEEeccc----------------c-HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 33455666669999999998761 1 1223578889999999999999999999 999999931
Q ss_pred ---------CCCceeecccccCCccee----eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 221 ---------SVPPLLDFETKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 221 ---------~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
...++..+ ..|+-.|+. +.+...+++|++.|.++|+||++...+.. ++- ...+++
T Consensus 154 ~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--ti~---------fp~si~ 221 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--TIT---------FPSSIK 221 (476)
T ss_pred eecccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE--EEe---------cCCcce
Confidence 12233334 568989988 44455699999999999999997666422 222 236899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC--CeEEEEEccCCCEEEEEe
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING--SIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~--~V~~l~~s~~g~~lasGs 365 (826)
+++.+|-.+.+.+|+.+|.|.+.++..-.... ..+..-.+...+.+. ..+..|.+ +|+||+++-||.+|++|+
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-~~v~~k~~~~~~t~~----~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-AGVNQKGRHEENTQI----NVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCccc-cccccccccccccee----eeeccccCCcceeEEEEecCccEEEeeC
Confidence 99999999999999999999998887543110 111111112223232 23344544 899999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.||.|+|||+.+.+|+.+.. ...++|+.+.+.|.
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPL 330 (476)
T ss_pred CCCCEEEEecchHHHHHHHh---hhccccceeEeecc
Confidence 99999999999999884332 25668888888773
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=174.89 Aligned_cols=242 Identities=14% Similarity=0.200 Sum_probs=183.9
Q ss_pred CceEEEeccCccEEEecchhHHH--HHhhccCCCCCCCCccceeee--cccCCCEEEEEEeeCCCeEEEec-CCcEEEec
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIER--YLLQYQSRSPPSAPKEVMLKM--PFLDSSITAMKLITGNSFILSSA-DEDYSLLA 219 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~--~~~~~~~~~~~~~~~~~~~~l--~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~ 219 (826)
+.+.+-.+.+|.|.-|+..+-.. +........ .....+... ..|...|.+++.++|++++++|+ |..|.+|+
T Consensus 154 ~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~---k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 154 DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVL---KSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred ccceeecCCCcceeeeehhcCcccccccccchhh---hhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEec
Confidence 35667777888888887554211 111110000 001111112 37889999999999999999999 99999997
Q ss_pred cCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 220 KSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 220 ~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
.... +...+ .+|.+.|.+ |.....-|.+++.|++|++|++..... ...+-+|...|..|.-..-.+
T Consensus 231 ~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~----------vetlyGHqd~v~~IdaL~reR 299 (479)
T KOG0299|consen 231 CDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY----------VETLYGHQDGVLGIDALSRER 299 (479)
T ss_pred Ccccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHhHH----------HHHHhCCccceeeechhcccc
Confidence 6553 33334 789999988 777777899999999999999944331 223457889999999988899
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+.+|+.|.++++|++.. ..+ +.+..+.+.+-|++|-.+. ++++|++||.|.+|++.
T Consensus 300 ~vtVGgrDrT~rlwKi~e-----------------esq-----lifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPE-----------------ESQ-----LIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLL 356 (479)
T ss_pred eEEeccccceeEEEeccc-----------------cce-----eeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeec
Confidence 999999999999999952 223 5666778889999998765 79999999999999999
Q ss_pred CCeeEEeeecccCC---------CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 377 GPTVLYQKHIASDI---------SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 377 ~~~~l~~~~~~~~~---------~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..+.+|+....++. ..+|++++..+. ++++++|+.+|.|++|-...|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~------sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG------SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEeccc------CceEEecCCCCceEEEEecCC
Confidence 99999887765442 127889998884 899999999999999999877
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-18 Score=162.33 Aligned_cols=234 Identities=14% Similarity=0.142 Sum_probs=181.9
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
..+.+...++..+.+|+...- -...+..+|...|..++.+.|...+++++ |..+.+|+..+.
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg-----------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRG-----------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred CCEEEEcCCCceEEeeccccc-----------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 356678888899999987550 12233578889999999999999999987 999999987665
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.....-.+|.+.|.. |..+...+++|+.|.++|+||-......|+..+. .....|.+|..+ ...++.|
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--------ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--------EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--------hhcCceeEEEec--ccEEEee
Confidence 554443789999999 9999999999999999999999555544433333 344688888775 4689999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.||++|.||++.+... .--...+|+|++|+++++.+++++.|+++++.|-.+++++
T Consensus 162 S~DGtvRtydiR~G~l~-----------------------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLS-----------------------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred ccCCcEEEEEeecceee-----------------------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 99999999999955331 1123568999999999999999999999999999999988
Q ss_pred EeeecccCCCCCeeEE--EEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 382 YQKHIASDISSGIVSL--QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl--~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.. ..+|...-..+ ++.. ...++++|+.||.|++||+..+..+..+..
T Consensus 219 ~s---YkGhkn~eykldc~l~q------sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 219 KS---YKGHKNMEYKLDCCLNQ------SDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred HH---hcccccceeeeeeeecc------cceeEEeccCCceEEEEEeccceeeeeecc
Confidence 32 23554433333 3333 367899999999999999998888876543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=165.66 Aligned_cols=239 Identities=16% Similarity=0.246 Sum_probs=178.5
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC--EEEEEECCCcEEEEe
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN--LFITGHSDGAINFWD 259 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~--~l~Tgs~DGtVriWD 259 (826)
.+..+.|.++|++++. +++++++|+ |++|++|+............|.|.|++ |.+... .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3456889999999976 589999998 999999976654333333679999999 776654 899999999999999
Q ss_pred C-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
. +-.. +.. +..|...|+.|+.+|.+++-++-+.|+.+++|++.++...
T Consensus 114 ~~~W~~---~~s--------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------------------- 162 (362)
T KOG0294|consen 114 VGSWEL---LKS--------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------------------- 162 (362)
T ss_pred cCCeEE---eee--------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc--------------------
Confidence 8 4322 233 3478888999999999999999999999999999865431
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.........+.+.|+|.|.+++++..++ |-+|.+....+..... ....+.++.|.. +..|++|+.|
T Consensus 163 --~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~----~~~r~l~~~~l~-------~~~L~vG~d~ 228 (362)
T KOG0294|consen 163 --FVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE----NPKRILCATFLD-------GSELLVGGDN 228 (362)
T ss_pred --eeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh----ccccceeeeecC-------CceEEEecCC
Confidence 1122233455699999999999998885 6899998776652221 112356666664 8999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEeecCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~s 497 (826)
+.|++||...+.+...+..|.+ ++-.|.++.. +.. -++.+++|+.|+||+
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~---RVK~i~~~~~--------------------------~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHEN---RVKDIASYTN--------------------------PEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ceEEEeccCCCccceeeecchh---heeeeEEEec--------------------------CCceEEEEeccCceEEEEE
Confidence 9999999998888877766654 3334444321 111 355566888999999
Q ss_pred cc
Q 003360 498 LS 499 (826)
Q Consensus 498 l~ 499 (826)
+.
T Consensus 280 ~~ 281 (362)
T KOG0294|consen 280 ID 281 (362)
T ss_pred cc
Confidence 97
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=184.86 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=203.0
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee--cccccCCccee---eC-CCCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD--FETKLKDGSQS---HS-KVKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~--~~~~h~g~V~~---~s-~~~~~l~Tgs~DGtVri 257 (826)
...+.+|++.|..+++.+. -.+++++ |+++++|......... ...+|.+-|.+ +. .++-.|++|+.|++|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 3457899999988876554 4677777 9999999764433332 12456666655 33 45557999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|..++.. +++.++ +|...|.+++...++. +++||+|.++++|....-.
T Consensus 86 ~~~~~~~--P~~~Lk--------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--------------------- 133 (745)
T KOG0301|consen 86 FKLSQAE--PLYTLK--------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--------------------- 133 (745)
T ss_pred EecCCCC--chhhhh--------ccccceeeeecCCcCc-eEecccccceEEecchhhh---------------------
Confidence 9996665 344444 8999999999777776 9999999999999986211
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....|+..|.++++-|.+ .+++|+.|.+|++|.- ++++.++ .+|.+.|..+++.+ +..+++|++
T Consensus 134 --~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~-------~~~flScsN 198 (745)
T KOG0301|consen 134 --YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLD-------DSHFLSCSN 198 (745)
T ss_pred --cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh---ccchhheeeeEEec-------CCCeEeecC
Confidence 2345678889999999988 7999999999999975 5666333 58999999999987 677999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~ 496 (826)
||.|+.|++ +|+++..+.+|.+. +.++.. ...+++++.|+|+ .+|||
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~---vYsis~----------------------------~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNF---VYSISM----------------------------ALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred CceEEEEec-cCceeeeeeccceE---EEEEEe----------------------------cCCCCeEEEecCCceEEEe
Confidence 999999999 58888876666543 233321 1234677777775 89999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
+-. .+.....+. ..|+|.+.+-. ++ -+++...||.|+|++..
T Consensus 247 ~~~-------e~~q~I~lP-ttsiWsa~~L~-Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 247 KKD-------ECVQVITLP-TTSIWSAKVLL-NG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ecC-------ceEEEEecC-ccceEEEEEee-CC-CEEEeccCceEEEEEec
Confidence 876 244445444 67888765442 22 25778899999999865
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=160.96 Aligned_cols=209 Identities=11% Similarity=0.135 Sum_probs=151.5
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-C
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-S 261 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s 261 (826)
+..-.++|...|+.++.+|.+..+++++ |++|++|+.+.+.......-...++.+|.|.|-++|+|.....|++||+ +
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 4445799999999999999999999999 9999999877543333312222334449999999999998889999999 3
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
... .|..++..+ .......+.|.|+|+|+.++.+...+.+.+.|--.+...+ . ..
T Consensus 172 ~dk-gPF~tf~i~-----~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-----t--------------fs 226 (311)
T KOG1446|consen 172 FDK-GPFTTFSIT-----DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-----T--------------FS 226 (311)
T ss_pred cCC-CCceeEccC-----CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-----e--------------Ee
Confidence 211 011112111 1233688999999999999999999999999977543211 0 11
Q ss_pred EeeccCC-eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGS-IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~-V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....+. -...+|+||+++|++|+.||+|.+|+++++..+.... ..+..++.++.|.|. +...++.+..
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~--~~~~~~~~~~~fnP~--------~~mf~sa~s~ 296 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR--GPNGGPVSCVRFNPR--------YAMFVSASSN 296 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec--CCCCCCccccccCCc--------eeeeeecCce
Confidence 1111111 2566899999999999999999999999999885554 237889999999883 4555666778
Q ss_pred EEEEECC
Q 003360 421 VLVLDSD 427 (826)
Q Consensus 421 V~iwd~~ 427 (826)
+.+|=..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888665
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-18 Score=193.83 Aligned_cols=319 Identities=12% Similarity=0.079 Sum_probs=206.0
Q ss_pred ccee--eCCCCCEEEEEE--CCCcEEEEeCCCC--ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 235 GSQS--HSKVKNLFITGH--SDGAINFWDVSCP--LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 235 ~V~~--~s~~~~~l~Tgs--~DGtVriWD~s~~--~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
.|.+ .+|++..++||+ .||.++||+...- ........-..-.....-|...|+|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 3445 899999999999 9999999997211 100000000011223456789999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCe-EEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNS-HIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~-~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
||..... ....+-++..+.. +.-+. ..+..|.+.|..++|+|++.+||+++.|++|.|||.++..++..
T Consensus 95 iW~~~~~------~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v-- 166 (942)
T KOG0973|consen 95 IWERAEI------GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV-- 166 (942)
T ss_pred Eeeeccc------CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee--
Confidence 9998731 0000111111111 00000 45567899999999999999999999999999999999977633
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC-CCcceEEEEecCCCCcccCcccc
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK-PSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~-~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
..+|.+.|..+.|.|. |+++++-+.|++|+||...+-.+.++...+-.. +...+... +
T Consensus 167 -l~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R-l------------- 225 (942)
T KOG0973|consen 167 -LRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR-L------------- 225 (942)
T ss_pred -eecccccccceEECCc------cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee-c-------------
Confidence 3589999999999996 999999999999999997765565554222221 11111110 1
Q ss_pred ccccccCCCCCCCCCCCCCEEEEee-----cCcEEEE-----eccccccccceeeeeeecCCCCceeeEeeee-------
Q 003360 465 NVAGMNKGSPKENAVPKQWFVLLCS-----EKAACAY-----SLSHAVQGVKKVLYKKKFHSSSCCWASTFYS------- 527 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~vv~~s-----e~~irv~-----sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~------- 527 (826)
.|+|++.|+.+.. -..+.|+ +..-.+-|+++.+..+.|+++.. -.....
T Consensus 226 ------------SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf--e~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 226 ------------SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF--ERNNKNGTSTQPN 291 (942)
T ss_pred ------------ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh--ccccccCCccCCC
Confidence 2444444443321 1122222 21112335555555555542211 111110
Q ss_pred CCceEEEEEEeeceEEEeccCCccccccc------cccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeeccc
Q 003360 528 GSDVGLMLLFTSGKFEIRSLPELSLLKET------SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQ 601 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~slP~L~~l~~~------sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~ 601 (826)
..-+++++..+|+.|-||+.-..|++... +++.+.+. +++...+.||.||.+.+..-+++-+. -.+.+
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGtV~~i~Fee~ElG-~~ls~ 365 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGTVALIHFEEKELG-VALSE 365 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc-----CCCCeEEEEecCCeEEEEEcchHHhC-cccCh
Confidence 01247788899999999998888887654 67778888 68899999999999988875443333 34444
Q ss_pred C
Q 003360 602 R 602 (826)
Q Consensus 602 ~ 602 (826)
|
T Consensus 366 e 366 (942)
T KOG0973|consen 366 E 366 (942)
T ss_pred h
Confidence 4
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-17 Score=159.68 Aligned_cols=273 Identities=13% Similarity=0.229 Sum_probs=184.2
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+-+.+.++||.+ +|..||+|..|+++.+|++.-..... .+.+..+...|-.+.|..
T Consensus 18 ~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~--------------~~~~~gh~~svdql~w~~-------- 74 (313)
T KOG1407|consen 18 GHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRK--------------ELVYRGHTDSVDQLCWDP-------- 74 (313)
T ss_pred hhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhh--------------hhcccCCCcchhhheeCC--------
Confidence 3567899999976 99999999999999999887641100 011112222222232322
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
.+++.+++...+..+.+||...-
T Consensus 75 ----------------------------------------------------~~~d~~atas~dk~ir~wd~r~~----- 97 (313)
T KOG1407|consen 75 ----------------------------------------------------KHPDLFATASGDKTIRIWDIRSG----- 97 (313)
T ss_pred ----------------------------------------------------CCCcceEEecCCceEEEEEeccC-----
Confidence 12233455556667778887661
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcce-e-eCCCCCEEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQ-S-HSKVKNLFI 247 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~-~-~s~~~~~l~ 247 (826)
++... +...... -.+.|+|+|.+++.+. |..|.+.+.+......- ....-.+. . |+-++++++
T Consensus 98 -----------k~~~~-i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 98 -----------KCTAR-IETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred -----------cEEEE-eeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcccceeeeeeecCCCCEEE
Confidence 11111 1111122 2456999999999998 77777665443222211 11111222 2 667777777
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
.-...|+|.|-... .+.++. .++.|.....||.|+|+|++||+|+.|..|.+||+..--+.
T Consensus 164 lt~GlG~v~ILsyp--sLkpv~--------si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~--------- 224 (313)
T KOG1407|consen 164 LTNGLGCVEILSYP--SLKPVQ--------SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE--------- 224 (313)
T ss_pred EecCCceEEEEecc--cccccc--------ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh---------
Confidence 77778999998763 433333 34589899999999999999999999999999999732221
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
-.+..+.-+|..|.||.+|++||+||+|..|-|=++.+|..++..+ +.++...++|+|.
T Consensus 225 ------------R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWHPk----- 283 (313)
T KOG1407|consen 225 ------------RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWHPK----- 283 (313)
T ss_pred ------------eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEecCC-----
Confidence 2234557789999999999999999999999999999999886664 5678889999994
Q ss_pred CCcEEEEEECC
Q 003360 408 EKNFLVIATKD 418 (826)
Q Consensus 408 d~~~l~sgs~D 418 (826)
..+|+.+..|
T Consensus 284 -~~LLAyA~dd 293 (313)
T KOG1407|consen 284 -RPLLAYACDD 293 (313)
T ss_pred -CceeeEEecC
Confidence 6777776655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-18 Score=168.56 Aligned_cols=239 Identities=16% Similarity=0.252 Sum_probs=171.2
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCC-CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 283 GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYE-PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
.+.|.+|+|+| ...+++.||.||+||+|++... .... -....|.++|.+++|+.+|..
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--------------------hhhhccCCCeEEEEEccCCce
Confidence 37899999999 4567779999999999999843 1110 122346889999999999999
Q ss_pred EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
+++|+.|+.+++||+.++++... ..|..+|..+.|.+.. ...+|++|++|.+|+.||.+....+.++ .
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v----~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~ 154 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQV----AAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLKFWDTRSSNPVATL----Q 154 (347)
T ss_pred EEeeccCCceEEEEccCCCeeee----eecccceeEEEEecCC----CcceeEecccccceeecccCCCCeeeee----e
Confidence 99999999999999999976622 3689999999998841 2468999999999999999988887663 3
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCce
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCC 520 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~ 520 (826)
.|.++.++..+. .-++|+++++.|.+|+|.+.....+......|+. ..|.
T Consensus 155 LPeRvYa~Dv~~-----------------------------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q-~R~v 204 (347)
T KOG0647|consen 155 LPERVYAADVLY-----------------------------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ-TRCV 204 (347)
T ss_pred ccceeeehhccC-----------------------------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccce-eeEE
Confidence 345555554432 2478889999999999975333333333334443 3333
Q ss_pred eeEeeeeCCceEEEEEEeeceEEEeccCCcccccccc----------------ccceeecCCCCCCCcccceeccCCCcE
Q 003360 521 WASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETS----------------IRGFVYLTPKPNSLSNTLMCSSWDGEL 584 (826)
Q Consensus 521 ~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~s----------------l~~~~~~~~~~~~~~~~~~~~s~~G~i 584 (826)
. .+ ....+.++..-.|.+.|+.+.+-.+-..++ +..+.|+ +.....+++.+||..
T Consensus 205 a--~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 205 A--CF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTF 275 (347)
T ss_pred E--EE--ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceE
Confidence 2 22 244555788889999999988754422222 2245565 455567777778888
Q ss_pred EEEcCCee
Q 003360 585 IMVNGNQE 592 (826)
Q Consensus 585 ~~~~g~~e 592 (826)
-.|.-+..
T Consensus 276 ~FWDkdar 283 (347)
T KOG0647|consen 276 SFWDKDAR 283 (347)
T ss_pred EEecchhh
Confidence 88877655
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=160.67 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=168.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eC-CCCCEEEEEECCCcEEEEeC-
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDV- 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~- 260 (826)
...|...|..++|+.+|..+++++ |+++++|+.....+..- ..+|.+.|-. |+ +...+++|++.|.+||+||+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 467888999999999999999998 99999996543221111 3568877766 44 56679999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc----eEEEeecCCC----
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS----FLSFTGSKKG---- 332 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~----~~~i~~s~~~---- 332 (826)
+++.. ..+.. ...=.-+.|+|++.++++|+.|..|.+.|.++....++.. ...+.++.++
T Consensus 96 ~~k~~---~~i~~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 96 SGKCT---ARIET---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred cCcEE---EEeec---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 55442 11221 1223467899999999999999999999998774322221 1222332111
Q ss_pred -----CeEEEEE------E-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 333 -----NSHIIHS------V-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 333 -----~~~~~~~------~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.+..+-. + ....|+....|+.|+|+|+++|+|+.|-.|.+||+...-|+..+ ..+.-||..+.|+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i---sRldwpVRTlSFS 240 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI---SRLDWPVRTLSFS 240 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee---ccccCceEEEEec
Confidence 1111111 1 12345677999999999999999999999999999887777333 4788899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
. |+++|++|+.|..|-|=+..||..+...
T Consensus 241 ~------dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 241 H------DGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred c------CcceeeccCccceEEeEecccCCeEEEe
Confidence 8 7999999999999999999999887663
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-16 Score=168.96 Aligned_cols=311 Identities=13% Similarity=0.105 Sum_probs=202.4
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeeccc----ccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFET----KLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~----~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
+.+|+.-|..+.|+|.+..|++++ |.++.+|..... +...+.. +..+|.++ |+|+++.+++-+.-|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 348999999999999998888888 999999965432 4433322 23445555 9999999999999999999
Q ss_pred EeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC---------CCccccce----
Q 003360 258 WDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE---------PHAIENSF---- 323 (826)
Q Consensus 258 WD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~---------~~~~~~~~---- 323 (826)
|-. ......+ ...+.+|-..|+.|+|+|.|.+|++.+.|-+-|||---.. +..|.-.+
T Consensus 343 Wkt~d~~~w~~--------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 343 WKTKDKTFWTQ--------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred EeccCccceee--------ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 994 2222111 2335688899999999999999999999999999854311 11111111
Q ss_pred ------EEEeec--------------------------------CCCCeEEEEE--------------------------
Q 003360 324 ------LSFTGS--------------------------------KKGNSHIIHS-------------------------- 339 (826)
Q Consensus 324 ------~~i~~s--------------------------------~~~~~~~~~~-------------------------- 339 (826)
.++.+. +++......+
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 111100 0000000000
Q ss_pred ------------------------EEEeeccCCeEEEEEccCCCEEEEEecC-----CeEEEEecCCCeeEEeeecccCC
Q 003360 340 ------------------------VKVMKINGSIISLNMNRNSQHLAVGSDQ-----GYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 340 ------------------------~~~~~~~~~V~~l~~s~~g~~lasGs~d-----G~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.+...|.-.|++++.+|+|+++|+++.. -.|++|+..+-...+.. ..|
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L---~~H 571 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL---EGH 571 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee---ccc
Confidence 1222334459999999999999999864 45899998876655322 489
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec-cCCCCCcceEEEEecCCCCcccCccccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI-HPKKPSRALFMQILNGQDGLARGANLSNVAGM 469 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~-~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~ 469 (826)
+-.|+.++|+| |+.+|++.+.|.++.+|....+... .+.+ ..+...+++ .++
T Consensus 572 sLTVT~l~FSp------dg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRII----Wdc---------------- 624 (764)
T KOG1063|consen 572 SLTVTRLAFSP------DGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRII----WDC---------------- 624 (764)
T ss_pred ceEEEEEEECC------CCcEEEEeecCceEEeeeeecccch-hhhhccccccceEE----EEc----------------
Confidence 99999999999 7999999999999999997533211 1100 011112222 111
Q ss_pred cCCCCCCCCCCCCCE-EEEeecCcEEEEeccccccccceeeee---eecCCCCceee----EeeeeCCceEEEEEEeece
Q 003360 470 NKGSPKENAVPKQWF-VLLCSEKAACAYSLSHAVQGVKKVLYK---KKFHSSSCCWA----STFYSGSDVGLMLLFTSGK 541 (826)
Q Consensus 470 ~~~~~~~~~~~~~~~-vv~~se~~irv~sl~~~~~g~~k~~~k---~~~~~~~c~~~----~~~~~~~~~~lv~~~~~G~ 541 (826)
.|.|++.+ +.++-|+.++||..+.. ..+.+.+ .++ ..|..+ .+++.....++++.+.+|+
T Consensus 625 -------sW~pde~~FaTaSRDK~VkVW~~~~~---~d~~i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~Ge 692 (764)
T KOG1063|consen 625 -------SWSPDEKYFATASRDKKVKVWEEPDL---RDKYISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGE 692 (764)
T ss_pred -------ccCcccceeEEecCCceEEEEeccCc---hhhhhhhhchhcc--CCceeeEEeeccccccccceEEEEecccE
Confidence 46677664 44455678999999832 1133333 222 223322 2222255678899999999
Q ss_pred EEEeccC
Q 003360 542 FEIRSLP 548 (826)
Q Consensus 542 I~i~slP 548 (826)
|.++..+
T Consensus 693 I~l~~~~ 699 (764)
T KOG1063|consen 693 IVLWRRK 699 (764)
T ss_pred EEEEecc
Confidence 9999877
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-16 Score=158.19 Aligned_cols=239 Identities=13% Similarity=0.221 Sum_probs=177.0
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKSV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~ 222 (826)
..+++.+.+..|.+||...- . ..-++..+.-.|..++|......++.++ |.+||......
T Consensus 27 ~~litss~dDsl~LYd~~~g----------------~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSG----------------K-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CEEEEecCCCeEEEEEcCCC----------------c-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 44566677779999998761 1 1223455556788888877666666554 77888886555
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.....+-.+|+..|.+ .+|-++.+++++.|++||+||+.....+-+..+ ..-...+|.|+|.++|+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------CCCcceeECCCCcEEEE
Confidence 4555555899999999 899999999999999999999953332111111 23346789999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
|.....|+|||++.-... .+.. .... ......+.|.|||+|+.++.++..+.+++.|.-.|.
T Consensus 158 ~~~~~~IkLyD~Rs~dkg---PF~t--------------f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKG---PFTT--------------FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred ecCCCeEEEEEecccCCC---Ccee--------------EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 999999999999843221 0110 1111 224568999999999999999999999999999999
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.++........-..+..|.| |++++++|+.||+|.+|++++|..+..+.
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftP------ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTP------DSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EeeeEeeccCCCCcceeEEECC------CCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 8877765433332335677888 79999999999999999999999988753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-16 Score=173.06 Aligned_cols=248 Identities=15% Similarity=0.213 Sum_probs=183.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc---
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--- 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--- 220 (826)
.+.+..+...|.+.+||+.. .+.-.+....|.+.|+...|-+..+.+++++ |..+++|.-
T Consensus 257 ~p~las~~~~G~m~~wDLe~----------------kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEK----------------KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred CeeEEeccCCceEEEEEcCC----------------CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 34556666779999999987 1222333468899999999999999999988 999999932
Q ss_pred -CCCceeecccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCC----Cceee----------------------eee
Q 003360 221 -SVPPLLDFETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSC----PLFLL----------------------ILS 270 (826)
Q Consensus 221 -~~~~~~~~~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~----~~~~~----------------------i~~ 270 (826)
+.+.++.+..+|..+-.+ |. ..+..+.+++.|++.|.+++.. +.+.. +..
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 235566667889888888 44 7888999999999988887511 11100 000
Q ss_pred c----------------------------ccccc-------cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 271 L----------------------------KQQSE-------KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 271 l----------------------------~~~~~-------~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+ +.... ..+......+++++.++-|++.+.|...|+|-+|++..+
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 00000 001112267899999999999999999999999999854
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEE---eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKV---MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI------ 386 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~------ 386 (826)
-.. ..+ ..|.++|+.++...-++.+++++.+|.+.+||......+....+
T Consensus 481 i~r---------------------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~ 539 (910)
T KOG1539|consen 481 IHR---------------------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG 539 (910)
T ss_pred eee---------------------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce
Confidence 221 222 35688999999999999999999999999999977653321111
Q ss_pred --------------------------------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 387 --------------------------------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 387 --------------------------------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+|...|+.++|+| ||.+|++++.|++|++||+.+|.++-.
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~------DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP------DGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC------CCcEEEEeecCCcEEEEeccCcceeee
Confidence 256888999999999 799999999999999999999999876
Q ss_pred e
Q 003360 435 N 435 (826)
Q Consensus 435 ~ 435 (826)
+
T Consensus 614 ~ 614 (910)
T KOG1539|consen 614 L 614 (910)
T ss_pred E
Confidence 4
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=164.31 Aligned_cols=200 Identities=17% Similarity=0.279 Sum_probs=156.7
Q ss_pred CCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCC--CceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCc
Q 003360 192 DSSITAMKLITGNSFIL-SSA-DEDYSLLAKSV--PPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~--~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
...+..++++++....+ +++ ||.+++|+... .++..+ ..|+..|.+ |.+ +++.+++++.||+||+||...+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45788899998765544 344 99999997543 244444 679999988 655 56688899999999999984433
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
- +.++.+|...|....|+|. ..+|+++|.||++++||++.. |.. +...
T Consensus 139 S----------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----------------gk~-----~~i~ 187 (311)
T KOG0277|consen 139 S----------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----------------GKF-----MSIE 187 (311)
T ss_pred c----------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----------------Cce-----eEEE
Confidence 1 3346789999999999995 579999999999999999832 222 3355
Q ss_pred eccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|...|.|+.|+. +...|++|+.|+.|++||++.-+.. .....+|.-.|..+.|+|. ....|++++-|-+++
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~eL~gh~~AVRkvk~Sph-----~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFELNGHGLAVRKVKFSPH-----HASLLASASYDMTVR 260 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--ceeecCCceEEEEEecCcc-----hhhHhhhccccceEE
Confidence 5677899999986 5568999999999999999876543 2233689999999999996 467899999999999
Q ss_pred EEECCCCc
Q 003360 423 VLDSDNGN 430 (826)
Q Consensus 423 iwd~~tg~ 430 (826)
|||...+.
T Consensus 261 iw~~~~~d 268 (311)
T KOG0277|consen 261 IWDPERQD 268 (311)
T ss_pred ecccccch
Confidence 99998554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-15 Score=163.14 Aligned_cols=286 Identities=15% Similarity=0.158 Sum_probs=191.9
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
..+|+|+++.+ ..+.||++-+||.|.||++... +.....+.. .....|-.+.|+ ++++||-
T Consensus 25 Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~-------------w~~~~vi~g-~~drsIE~L~W~----e~~RLFS 85 (691)
T KOG2048|consen 25 PSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN-------------WFLEPVIHG-PEDRSIESLAWA----EGGRLFS 85 (691)
T ss_pred ccceEEEEEec-cCCceeeeccCCcEEEEccCCC-------------ceeeEEEec-CCCCceeeEEEc----cCCeEEe
Confidence 67999999954 8888999999999999999875 111111111 334468899998 4789999
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.|.... +.-++-.+..+....+ ...+.+-.+.+-+. +..+.+++.+|.++.++.+.-
T Consensus 86 ~g~sg~-------i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~--------~~~l~IgcddGvl~~~s~~p~------- 142 (691)
T KOG2048|consen 86 SGLSGS-------ITEWDLHTLKQKYNID-SNGGAIWSIAINPE--------NTILAIGCDDGVLYDFSIGPD------- 142 (691)
T ss_pred ecCCce-------EEEEecccCceeEEec-CCCcceeEEEeCCc--------cceEEeecCCceEEEEecCCc-------
Confidence 998744 3333333322222111 12233333333222 255678888997666654430
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee---cc-ccc----CCccee-eCCC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD---FE-TKL----KDGSQS-HSKV 242 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~---~~-~~h----~g~V~~-~s~~ 242 (826)
.-.+...+.-..+.|-+++|.+++..+++|+ |+.|++|+...+.... +. .+. .--|++ ..-.
T Consensus 143 --------~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 143 --------KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR 214 (691)
T ss_pred --------eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence 1223444566678999999999999999999 9999999766543322 10 111 122455 2224
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
...|++|-.-|+|++||.....+ .+.+..|...|.||+..++...+.+++.|+.|.-|...++...
T Consensus 215 d~tI~sgDS~G~V~FWd~~~gTL----------iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---- 280 (691)
T KOG2048|consen 215 DSTIASGDSAGTVTFWDSIFGTL----------IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---- 280 (691)
T ss_pred cCcEEEecCCceEEEEcccCcch----------hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc----
Confidence 45799999999999999955553 2234578899999999999999999999999999998765331
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
+ +.. .....|...|.+++..++ .+.+|+.|+++.+--.+.
T Consensus 281 -w-v~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 -W-VIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -e-eee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 0 000 112234556999999877 799999999998876654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=181.63 Aligned_cols=195 Identities=16% Similarity=0.272 Sum_probs=155.3
Q ss_pred EEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 198 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
+.++ ....++.|....+-+|+.....+..+..-+...|++ |+++|.+|++|..+|.|.|||...... ++
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----~~--- 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----TR--- 253 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----cc---
Confidence 4555 445677777888999987665555442223788888 999999999999999999999833221 11
Q ss_pred cccccc-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEE
Q 003360 276 EKDFSL-SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLN 353 (826)
Q Consensus 276 ~~~~~~-h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~ 353 (826)
.+.. |...|-+++|. +..+.+|+.||.|..+|++..+.. +. ...|...|+.|+
T Consensus 254 --~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~---------------------~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 254 --TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV---------------------VSTLQGHRQEVCGLK 308 (484)
T ss_pred --cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh---------------------hhhhhcccceeeeeE
Confidence 2234 78899999998 678999999999999999955432 12 334677899999
Q ss_pred EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCce
Q 003360 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNM 431 (826)
Q Consensus 354 ~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~ 431 (826)
|++++.++|+|+.|+.|.|||......++.+. .|...|..++|+|. ....|++|+ .|++|++||..+|..
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~-----q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPW-----QSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCC-----ccCceEEcCCCcccEEEEEEcCCCcE
Confidence 99999999999999999999998777775554 79999999999997 578888865 799999999999887
Q ss_pred EEe
Q 003360 432 LST 434 (826)
Q Consensus 432 i~~ 434 (826)
+..
T Consensus 381 i~~ 383 (484)
T KOG0305|consen 381 IDS 383 (484)
T ss_pred ecc
Confidence 754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=161.74 Aligned_cols=174 Identities=13% Similarity=0.159 Sum_probs=135.1
Q ss_pred ccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCc----eee----eeecccccccccccCCCCeEEEEEeC-CCC
Q 003360 229 ETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPL----FLL----ILSLKQQSEKDFSLSGIPLTALYYDG-TSR 296 (826)
Q Consensus 229 ~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~----~~~----i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~ 296 (826)
+.+|.|+|.+ . ...|+++++|+.||+|.+||+.... -.+ .+.+. ...-++|..+|+.+.|-| |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~---~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA---KQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc---ccCCccceeeeeeeEEeeecCc
Confidence 4789999998 3 4468999999999999999992211 111 12222 112257889999999999 678
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC---CEEEEEecCCeEEEE
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---QHLAVGSDQGYVYLL 373 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~lasGs~dG~V~vw 373 (826)
+|.+++.|.++++||.++-+. .......+.|.+-++||-. -++|+|..|-.|++.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~----------------------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQE----------------------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred eeecccccceEEEeeccccee----------------------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 999999999999999985433 3444557788888888853 479999999999999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC-ceEEee
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG-NMLSTN 435 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg-~~i~~~ 435 (826)
|+.+|.+-++. .+|...|.++.|+|. ..-.|++|+.||.|++||++.- .+...+
T Consensus 174 Di~SGs~sH~L---sGHr~~vlaV~Wsp~-----~e~vLatgsaDg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 174 DIASGSFSHTL---SGHRDGVLAVEWSPS-----SEWVLATGSADGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred eccCCcceeee---ccccCceEEEEeccC-----ceeEEEecCCCceEEEEEeecccceeEEe
Confidence 99999988555 599999999999996 3557889999999999999854 344444
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=173.52 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=205.1
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
....+..|++.|..+.|-++...+++++ |..|++|+..... +.....+-.|+|.+ |.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4455789999999999999999999988 9999999754422 22223455677888 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+.....+ ..++.+|...|+++.|.-....+++|+.|.+|++||+....+
T Consensus 247 nvd~~r~----------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--------------------- 295 (459)
T KOG0288|consen 247 NVDSLRL----------RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--------------------- 295 (459)
T ss_pred eccchhh----------hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---------------------
Confidence 9943331 223568999999999988776699999999999999985433
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.+.......+..|..+ ...+++|-.|++|++||++++.+.+... ..+.|+++..+. ++..|.+++.|
T Consensus 296 -~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~------~g~~lLsssRD 362 (459)
T KOG0288|consen 296 -SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSM------DGLELLSSSRD 362 (459)
T ss_pred -eccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee----cCcceeeEeecc------CCeEEeeecCC
Confidence 3333334456666666 4468999999999999999999986664 234899999988 68999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~s 497 (826)
.++.++|+++.+...++.......+ .-+....|+|++.||++++ ++.|+||+
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~a---------------------------sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCA---------------------------SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred CceeeeecccccEEEEeeccccccc---------------------------cccceeEECCCCceeeeccCCCcEEEEE
Confidence 9999999998887776532111100 0011125778888988875 56999999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeee--eCCceEEEEEEeeceEEEe
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFY--SGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~--~~~~~~lv~~~~~G~I~i~ 545 (826)
+. ..|...+.+.+ .|-.+-... .+.|.+|+..-.++.+.+|
T Consensus 416 v~-----tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 416 VF-----TGKLEKVLSLS--TSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cc-----CceEEEEeccC--CCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 98 55666665543 221111111 1556666666555555443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=173.16 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=156.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCC----Cc-------eeecccccCCccee--eCCCCC-EEEEEEC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSV----PP-------LLDFETKLKDGSQS--HSKVKN-LFITGHS 251 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~-------~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~ 251 (826)
.-.|++.|+.+++.|..+.++++. .+.+.+|+... +. -.. ..+|++.-.+ |++... .|++|+.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceE-EEeecccccccccccccceeEeeccC
Confidence 357999999999999988887744 77899994321 11 112 2567773333 665443 8999999
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
|++|++||+....... ..+. ....+..|...|..++|++. ..+|++++.|+.+.|||.|.+...
T Consensus 199 d~~i~lwdi~~~~~~~-~~~~--p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------ 263 (422)
T KOG0264|consen 199 DHTICLWDINAESKED-KVVD--PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------ 263 (422)
T ss_pred CCcEEEEeccccccCC-cccc--ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------------
Confidence 9999999994322100 0011 12335789999999999995 478999999999999999953110
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.. .....|.++|.|++|+| ++..||+|+.|++|++||+|+.... .....+|...|.++.|+|. ..
T Consensus 264 --~~-----~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--lh~~e~H~dev~~V~WSPh-----~e 329 (422)
T KOG0264|consen 264 --PS-----HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--LHTFEGHEDEVFQVEWSPH-----NE 329 (422)
T ss_pred --Cc-----ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--ceeccCCCcceEEEEeCCC-----CC
Confidence 01 22335688899999999 4567899999999999999987643 3334589999999999996 57
Q ss_pred cEEEEEECCCcEEEEECCC
Q 003360 410 NFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~t 428 (826)
.+|++++.|+.+.|||+..
T Consensus 330 tvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ceeEecccCCcEEEEeccc
Confidence 8999999999999999973
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=171.81 Aligned_cols=243 Identities=22% Similarity=0.280 Sum_probs=184.6
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD 227 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~ 227 (826)
+..+..|-+-+||... ...+.+.+ .+-...-+..|..+.+++|++.|++|+ -.++.+|+...+....
T Consensus 434 VyTgGkgcVKVWdis~-------pg~k~Pvs-----qLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQ-------PGNKSPVS-----QLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred eEecCCCeEEEeeccC-------CCCCCccc-----cccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence 3344567888999876 12222111 111223457899999999999999999 7899999876543332
Q ss_pred cccccCC-ccee----eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 228 FETKLKD-GSQS----HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 228 ~~~~h~g-~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
- ...+. +-.| .+||.++..++..||.|+|||+....+ +.+|.+|.+.+.||.++++|..|-+|+
T Consensus 502 k-aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----------VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 502 K-AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----------VRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred h-hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----------eecccCCCCCceeEEecCCCceeecCC
Confidence 1 22222 2222 899999999999999999999977663 345679999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
-|.+||.||++.+.. +.......+|.+|.++|.+.+||+|-+++.|-|.....+...
T Consensus 571 lDntvRcWDlregrq----------------------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQ----------------------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred Cccceeehhhhhhhh----------------------hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 999999999995532 222223677999999999999999999999999888766533
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEE
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQI 450 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~ 450 (826)
.. +.|.+.|.++.|.++ |.++++.+.|.-+..|...-|.-+ ++.+..+.+++..+
T Consensus 628 ql---hlheScVLSlKFa~c------GkwfvStGkDnlLnawrtPyGasi----FqskE~SsVlsCDI 682 (705)
T KOG0639|consen 628 QL---HLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASI----FQSKESSSVLSCDI 682 (705)
T ss_pred ee---cccccEEEEEEeccc------CceeeecCchhhhhhccCccccce----eeccccCcceeeee
Confidence 23 468899999999997 999999999999999998877666 34555566666544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-16 Score=147.42 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=152.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEe--ccCC----CceeecccccCCccee--e----CCCCCEEEEEEC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLL--AKSV----PPLLDFETKLKDGSQS--H----SKVKNLFITGHS-DG 253 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w--~~~~----~~~~~~~~~h~g~V~~--~----s~~~~~l~Tgs~-DG 253 (826)
-..|.+.|.|.+|+|+|..+++|+ |++|++. +... .+-..+ .-|.|.|.. | ...+.+|++++. |.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 356889999999999999999999 9999887 3222 222223 448888877 3 334567777654 44
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
.|.+=|-...+ . -..+.+|.+-|.++ ++-++-++++|+.|.+|++||++.+.+.. .+.. +.
T Consensus 164 ~iy~tdc~~g~--~--------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~-----~l~~--~~- 224 (350)
T KOG0641|consen 164 KIYITDCGRGQ--G--------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN-----TLDN--DF- 224 (350)
T ss_pred eEEEeecCCCC--c--------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee-----eccC--cc-
Confidence 44444442221 1 11234677777776 35678899999999999999999654321 0000 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
...+.....|.+++..|.|++|++|-.|....+||++++..+..+. .|+..|.++.|+|. ..+|+
T Consensus 225 ------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~------a~yll 289 (350)
T KOG0641|consen 225 ------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPG------AHYLL 289 (350)
T ss_pred ------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCC------ceEEE
Confidence 0001114569999999999999999999999999999999986554 78999999999994 78999
Q ss_pred EEECCCcEEEEECCCCceEEe
Q 003360 414 IATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 414 sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+|+-|..|++-|+. |.+...
T Consensus 290 t~syd~~ikltdlq-gdla~e 309 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQ-GDLAHE 309 (350)
T ss_pred EecccceEEEeecc-cchhhc
Confidence 99999999999998 654433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=171.97 Aligned_cols=258 Identities=12% Similarity=0.194 Sum_probs=187.0
Q ss_pred CccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCc-eeecccccCCcceeeCCCCCEEEEEECCCcEEE
Q 003360 181 PKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQSHSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 181 ~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVri 257 (826)
++++.-.|.+|...|.|++=+|.. ..+++|+ ||.|++|+..... ...+ ..|.|-|....-+.+.++|+++|.+|+.
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQTSFFTVGDDKTVKQ 133 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecccceEEecCCcceee
Confidence 556777789999999999999987 6778888 9999999876533 3344 7899999883333388999999999999
Q ss_pred EeCCCCceee---------------------------eeecc-cccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEE
Q 003360 258 WDVSCPLFLL---------------------------ILSLK-QQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVR 308 (826)
Q Consensus 258 WD~s~~~~~~---------------------------i~~l~-~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~ 308 (826)
|-+.++.... |++.. ......+...-..|.++.|+|. ...|++|..|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 9864432100 00000 0001112222267888889884 57888999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
|||++.+.. ++..-....-..|+|+|.+.-+++|++|..++.+|++...-. .....
T Consensus 214 LyD~R~~~P----------------------l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p--~~v~~ 269 (433)
T KOG0268|consen 214 LYDLRQASP----------------------LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP--LNVHK 269 (433)
T ss_pred EEecccCCc----------------------cceeeeeccccceecCccccceeeccccccceehhhhhhccc--chhhc
Confidence 999996543 222222445578999999888999999999999999876544 34556
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
+|.++|.++.|+|. |+-+++||-|.+|+||..+-|.-.-.+ |.+.--.++++.
T Consensus 270 dhvsAV~dVdfspt------G~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk------------------- 322 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPT------GQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVK------------------- 322 (433)
T ss_pred ccceeEEEeccCCC------cchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEE-------------------
Confidence 89999999999996 999999999999999999876544332 333323344432
Q ss_pred ccCCCCCCCCCCCCCEEEEeecC-cEEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEK-AACAYSLS 499 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~ 499 (826)
++-+..||+.++|+ .||+|.-.
T Consensus 323 ---------~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 323 ---------YSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ---------EeccccEEEecCCCcceeeeecc
Confidence 23345799998886 79999865
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-16 Score=156.99 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=161.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++++.+|++..||...- ....+..|+.+|+|+.+++-...+++|+ |++|++|+.+...
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTG------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred ceEEEeccCceEEEEEecCC------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 44578888999999998771 1234688999999999999888899998 9999999876422
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.... ......|.+.+-.++.|++|..|..|.+||+.. ... ++.+ + ..-...++||++-|++.=+++++-
T Consensus 128 ~~~~-~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~---~q~r---e---S~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 128 VVGT-FDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP---FQRR---E---SSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred cccc-cccCceEEEEeccCCEEEEeecCceEEEEEcccccch---hhhc---c---ccceeEEEEEEEecCCCceEEEee
Confidence 2111 223346777788889999999999999999933 221 0011 0 111267899999998888999999
Q ss_pred CCcEEEEEeCCCCCccccc--eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENS--FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~--~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
||.|.+=.++..+...... +.+-..+.++.. .--+|.+|+|+|-.+.+|+|+.||.|.+||+...+-+
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCce----------EEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 9999886666442211111 111111111111 1236999999999999999999999999999988877
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+. .....|.+++|+. |+..|++++.
T Consensus 268 ~q~~---~~~~SI~slsfs~------dG~~LAia~s 294 (323)
T KOG1036|consen 268 KQLA---KYETSISSLSFSM------DGSLLAIASS 294 (323)
T ss_pred hhcc---CCCCceEEEEecc------CCCeEEEEec
Confidence 4443 4566799999998 6999998875
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=172.37 Aligned_cols=220 Identities=15% Similarity=0.213 Sum_probs=169.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++++....|.+||+.. |+ ......++...+...+++.+||.+..+++. ||.|.+|+.....
T Consensus 478 rtLivGGeastlsiWDLAa-------------pT--prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAA-------------PT--PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ceEEeccccceeeeeeccC-------------CC--cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 3455555555677788766 11 111111233334566778899999999877 9999999876544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCC--CCeEEEEEeCCCCEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~--~~V~~l~fsp~~~~La 299 (826)
+..-..+|+.|+.| .+++|..|.||+-|.+||.||+ .+..+ . .|. ..|.++.+||++.+|+
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql------q--------qhdF~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL------Q--------QHDFSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh------h--------hhhhhhhheecccCCCcccee
Confidence 43333899999999 9999999999999999999999 55542 1 233 6899999999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+|-+++.|.|-....... .....|..-|.+|.|.+.|+++++.+.|..+..|.+--+.
T Consensus 609 vGMens~vevlh~skp~k----------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEK----------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred eecccCcEEEEecCCccc----------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 999999998877663222 4455567789999999999999999999999999998888
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
-+|... -.++|.+...+. |..++++|+.|....||.+
T Consensus 667 siFqsk----E~SsVlsCDIS~------ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSK----ESSSVLSCDISF------DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecc----ccCcceeeeecc------CceEEEecCCCcceEEEEE
Confidence 886553 456888888877 6899999999988777753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=160.75 Aligned_cols=209 Identities=10% Similarity=0.125 Sum_probs=159.2
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--C--CceeecccccCCccee--e-CC-CCCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--V--PPLLDFETKLKDGSQS--H-SK-VKNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~--~~~~~~~~~h~g~V~~--~-s~-~~~~l~Tgs~DGtVriWD 259 (826)
..|+..|..+...--|..|++++ |++|+++..+ . ..+.+ ..+|.|+|+. | +| .|.+||+++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~-L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE-LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE-ecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 56888888888888899999988 9999999332 2 23334 4899999998 4 43 899999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
-.++.... ......|...|++|+|.|. +..|++++.||.|.|.+++....- ...
T Consensus 87 e~~g~w~k--------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w---------------~t~- 142 (299)
T KOG1332|consen 87 EENGRWTK--------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------------TTS- 142 (299)
T ss_pred cCCCchhh--------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc---------------cch-
Confidence 96655311 2234578899999999996 578999999999999999854110 000
Q ss_pred EEEEEeeccCCeEEEEEccC---C-----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNRN---S-----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~---g-----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....|.-.|++++|.|. | .+|++|+.|..|+||+....+-.... ...+|.+.|..++|.|..
T Consensus 143 --ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 143 --KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-TLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred --hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh-hhhhcchhhhhhhhcccc
Confidence 111234556888888875 4 57999999999999999887533211 246899999999999963
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.-..+|++|+.||+|.||..+
T Consensus 220 --gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 220 --GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred --CCCceeeEEecCCCcEEEEEec
Confidence 2236789999999999999876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=162.32 Aligned_cols=249 Identities=13% Similarity=0.158 Sum_probs=168.1
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------C--------------------ceeec
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------P--------------------PLLDF 228 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------~--------------------~~~~~ 228 (826)
.|.+|...|++++|+.||+++++++ |++|++|+.+. + .+..+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 3678999999999999999999988 99999995110 0 00000
Q ss_pred ----------------------ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 229 ----------------------ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 229 ----------------------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
...|.-.+.. ....+.+|++++.|..|.+|++.++.++. +. ....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~---id--------tnq~ 229 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQS---ID--------TNQS 229 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeee---ec--------cccc
Confidence 0011112222 44556799999999999999998777433 22 1223
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~las 363 (826)
.-+..+.+|+|+++|+++..-.|++|..- |.++|..-.+.+ ..+..|...|++++||++..++++
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~--------------f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPI--------------FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEE--------------eccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 34567889999999999999999999975 223442211111 445567888999999999999999
Q ss_pred EecCCeEEEEecCC-------CeeEEeee-cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 364 GSDQGYVYLLDTEG-------PTVLYQKH-IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 364 Gs~dG~V~vwD~~~-------~~~l~~~~-~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+.||+++|||+.- +.++.... ......+....++.+| +++.|+ .+....++++..++|+....+
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP------~g~~lA-~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP------SGDSLA-VSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC------CCcEEE-eecCCceEEEEcccCccchhH
Confidence 99999999999842 23332221 1112233344788888 366555 455678999999998765443
Q ss_pred eccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEe
Q 003360 436 LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYS 497 (826)
Q Consensus 436 ~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~s 497 (826)
. .-....+ ..+ .+.+++.|+..|+|+.+||+.
T Consensus 369 e--~~h~~~I---s~i-------------------------s~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 369 E--DIHSTTI---SSI-------------------------SYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred H--HhhcCce---eeE-------------------------EecCCCcEEeeecceeeeeec
Confidence 1 1111111 222 255677899999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=191.23 Aligned_cols=205 Identities=15% Similarity=0.253 Sum_probs=172.7
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCc
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPL 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~ 264 (826)
-.|...|.|...-..++.+++|+ |+.+.+|.-..++...-..+|.++|.+ |+....+|++|+.||+||+||+ .+..
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 46778888988888889999998 899999976655544434899999999 9999999999999999999999 4444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+..+.+|...+..|.|+|.+.++|+|+.|+.+++||.+...+. ..+..
T Consensus 105 -----------vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~---------------------~~~~s 152 (825)
T KOG0267|consen 105 -----------VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS---------------------HTYKS 152 (825)
T ss_pred -----------hhhhhccccCcceeeeccceEEeccccccccceehhhhccCce---------------------eeecC
Confidence 2234678899999999999999999999999999999854332 22333
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|...|.++.|+|+|.++++|++|.+++|||...++++..+ ..|...|.++.|+|. .-.+..|+.|++|++|
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef---~~~e~~v~sle~hp~------e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF---KSHEGKVQSLEFHPL------EVLLAPGSSDRTVRFW 223 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeeccccccccccc---ccccccccccccCch------hhhhccCCCCceeeee
Confidence 6677999999999999999999999999999999988555 368889999999995 6678899999999999
Q ss_pred ECCCCceEEe
Q 003360 425 DSDNGNMLST 434 (826)
Q Consensus 425 d~~tg~~i~~ 434 (826)
|+++-+.+.+
T Consensus 224 dletfe~I~s 233 (825)
T KOG0267|consen 224 DLETFEVISS 233 (825)
T ss_pred ccceeEEeec
Confidence 9998777766
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=162.12 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=159.9
Q ss_pred cCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCC-Ccee-ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 191 LDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSV-PPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~-~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.+..|.+++|+|....++ +++ |++||+|..+. ..+. .....|.+.|.+ |+.+|..+++|+.|+.+++||+...+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999665555 566 99999995432 1222 223668999988 99999999999999999999994444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEeCCCCCccccceE-------------EEeec
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFL-------------SFTGS 329 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~-------------~i~~s 329 (826)
. ..+..|..+|.++.|-+... .|++||.|.+|+.||.+.........+. -+...
T Consensus 106 ~-----------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 106 V-----------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred e-----------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence 2 23457999999999987654 8999999999999999965221111110 01111
Q ss_pred CCCCe-EEEEE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEeeecccC---CC---CCe
Q 003360 330 KKGNS-HIIHS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQKHIASD---IS---SGI 394 (826)
Q Consensus 330 ~~~~~-~~~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~~~~~~~---~~---~~V 394 (826)
..+.. ..+.. ....+++-.++|++..++....|.|+-.|.|.|..+..+ +.-|++++... .. -+|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 11100 00000 111223556999999998888899999999999988776 44455655432 11 257
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+|+|.|. ...|+++++||++.+||-..-..+.+.
T Consensus 255 Nsi~FhP~------hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 255 NSIAFHPV------HGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred cceEeecc------cceEEEecCCceEEEecchhhhhhhcc
Confidence 78899995 788999999999999998865555443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=164.29 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=167.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~ 262 (826)
+.+|...|+.++.....+.+.+++ |.+.++|.......+....+|.|.|.+ |++.+.+++|++.|++-.||.+ .-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 468999999999988888888888 999999976554444334999999999 9999999999999999999983 11
Q ss_pred Cceeeee--------eccc------------c--------cccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 263 PLFLLIL--------SLKQ------------Q--------SEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 263 ~~~~~i~--------~l~~------------~--------~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
+..+... .++. . ....+.+|...|.+..|-..++.++++++|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 1100000 0000 0 0123556778899999999999999999999999999996
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
+... ..+..|....+.++-+|..+++++.+.|-+.++||++. .+.......+|...|
T Consensus 304 ge~v---------------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 304 GEVV---------------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTV 360 (481)
T ss_pred Ccee---------------------ccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccce
Confidence 6442 12234556678888899999999999999999999983 334455567999999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEe
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLST 434 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~ 434 (826)
++..|.. +..+++|+.|.+|+|||+++-+ .+.+
T Consensus 361 TS~vF~~-------dd~vVSgSDDrTvKvWdLrNMRsplAT 394 (481)
T KOG0300|consen 361 TSVVFNT-------DDRVVSGSDDRTVKVWDLRNMRSPLAT 394 (481)
T ss_pred eEEEEec-------CCceeecCCCceEEEeeeccccCccee
Confidence 9999997 7789999999999999998643 4444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=179.96 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=163.3
Q ss_pred eCCCeEEEec-CCcEEEeccCC-------CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 202 TGNSFILSSA-DEDYSLLAKSV-------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~-------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
|++++|++|+ |++|++|+... +....+ ..|...|.. ...+++.|++++.|-+|++|++.....-++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-- 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-- 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--
Confidence 5778899999 99999995332 123333 568888888 6677889999999999999999433211222
Q ss_pred ccccccccccCCCCeEEEEE-eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCe
Q 003360 272 KQQSEKDFSLSGIPLTALYY-DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSI 349 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~f-sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V 349 (826)
.+..|.+-|.||++ .++..++|+|+-|+.|.+||++.+....-..+..++. -... .+..+|
T Consensus 112 ------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~-----------~sl~sG~k~si 174 (735)
T KOG0308|consen 112 ------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV-----------NSLGSGPKDSI 174 (735)
T ss_pred ------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc-----------ccCCCCCccce
Confidence 23468899999999 8899999999999999999999763200000000000 0111 346679
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+++.++.|..+++|+..+-+++||.++++.+.... +|...|..+-... ||..++++++||+|++||+.-.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~d------DGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVND------DGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcC------CCCeEeecCCCceEEeeecccc
Confidence 999999999999999999999999999998884333 9999999999888 7999999999999999999999
Q ss_pred ceEEeeeccCCC
Q 003360 430 NMLSTNLIHPKK 441 (826)
Q Consensus 430 ~~i~~~~~~~~~ 441 (826)
+|+.++..|...
T Consensus 246 rCl~T~~vH~e~ 257 (735)
T KOG0308|consen 246 RCLATYIVHKEG 257 (735)
T ss_pred ceeeeEEeccCc
Confidence 999998777654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=167.23 Aligned_cols=235 Identities=12% Similarity=0.157 Sum_probs=173.2
Q ss_pred EeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCce--
Q 003360 150 LLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPL-- 225 (826)
Q Consensus 150 v~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~-- 225 (826)
..+..|.+++||... +++.....-...+-++|.+|...-..++|++.... +++++ |+.+++|+.+....
T Consensus 142 t~t~~~dv~Vfd~tk-------~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 142 TKTSSGDVYVFDYTK-------HPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred ecCCCCCEEEEEecc-------CCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 447789999999887 33322221123344578899987788889886554 44455 99999996443211
Q ss_pred -----eecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-C
Q 003360 226 -----LDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-R 296 (826)
Q Consensus 226 -----~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~ 296 (826)
.....+|...|.. |++. ..++++++.|+.+.|||+......+ ...+..|...|+|++|+|-+ .
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~--------~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP--------SHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC--------cccccccCCceeEEEeCCCCCc
Confidence 1124678888888 8874 4589999999999999994322111 22346789999999999964 6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~ 375 (826)
+||+|+.|++|.+||+|.-... . ..+..|...|.+|.|||.. ..||+++.|+.+.|||+
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~---------------l-----h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKP---------------L-----HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred eEEeccCCCcEEEeechhcccC---------------c-----eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 8899999999999999843221 1 4556678889999999964 67899999999999999
Q ss_pred CCC--------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 376 EGP--------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 376 ~~~--------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..- .++|. ..+|...|..+.|.|. +.-.|++++.|+.+.||...
T Consensus 347 s~ig~eq~~eda~dgppEllF~---HgGH~~kV~DfsWnp~-----ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFI---HGGHTAKVSDFSWNPN-----EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccChhhhccCCcceeEE---ecCcccccccccCCCC-----CCeEEEEecCCceEEEeecc
Confidence 542 23332 3589999999999996 56678899999999999986
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=176.17 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=142.5
Q ss_pred eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 206 FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 206 ~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
++++++ +++|.+|........+.....+-.+.+ ++.+|+++|.|+.|-.|++-+...... +..+.+|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----------~~~lrgh 137 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----------EKVLRGH 137 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----------heeeccc
Confidence 444444 566666643322222111222334444 888999999999999999999832221 1123579
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
..+|.+|.|+|.+.+||+.+.||.|++|++..+...+ .+..+. ++... .....++.++|+|+|..+|
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~--k~n~~---------~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVD--KDNEF---------ILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh--hcccCC--ccccc---------cccceeeeeeecCCCCeEE
Confidence 9999999999999999999999999999998653321 000000 00000 0134578899999988899
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC------CCceEEeee
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD------NGNMLSTNL 436 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~------tg~~i~~~~ 436 (826)
+...|+.|++|+..+....+..... .+.+.+..++|+|+ |.||++++.||.|.|||.. -.+.++...
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPn------G~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~a 277 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPN------GKYIAASTLDGQILVWNVDTHERHEFKRAVCCEA 277 (933)
T ss_pred eeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCC------CcEEeeeccCCcEEEEecccchhccccceeEEEe
Confidence 9999999999999999988766542 34444999999996 9999999999999999999 444444444
Q ss_pred ccCC
Q 003360 437 IHPK 440 (826)
Q Consensus 437 ~~~~ 440 (826)
.++.
T Consensus 278 w~p~ 281 (933)
T KOG1274|consen 278 WKPN 281 (933)
T ss_pred cCCC
Confidence 4444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-14 Score=152.81 Aligned_cols=323 Identities=13% Similarity=0.168 Sum_probs=212.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecC---cEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DG---sI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
-++.|+|+++..-+|--+++.-+|| -+-+||-+-+...-..+ ...+-+....|. |.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk----------------~sne~v~~a~FH---Ptd~ 213 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK----------------TSNEVVFLATFH---PTDP 213 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce----------------eccceEEEEEec---cCCC
Confidence 4889999999765654444444443 46788877651111000 011224444554 3455
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeE-EEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTT-KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~-~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
.|.|.-|... +.+|.+......+.. .+.-+-...+.-+.+++. .-++.+-+.|.|.+|+...-
T Consensus 214 nliit~Gk~H-----~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en---------gdviTgDS~G~i~Iw~~~~~-- 277 (626)
T KOG2106|consen 214 NLIITCGKGH-----LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN---------GDVITGDSGGNILIWSKGTN-- 277 (626)
T ss_pred cEEEEeCCce-----EEEEEccCCceEEEeeccccccceEEEEEEEcCC---------CCEEeecCCceEEEEeCCCc--
Confidence 6777666644 444444333322221 122222222333333322 23577888899999998651
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec------------------
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF------------------ 228 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~------------------ 228 (826)
........|+..|.+++...+|..+- |+ |..|..|+.........
T Consensus 278 ---------------~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 278 ---------------RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ---------------eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence 12222348999999999999998776 77 99999995322111110
Q ss_pred ----------------------ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 229 ----------------------ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 229 ----------------------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
..+|..+.+. .+|+.+.++|+++|+.|++|+-... +++.. -..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~----~wt~~---------~~d 408 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKL----EWTKI---------IED 408 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCce----eEEEE---------ecC
Confidence 1235555555 7899999999999999999993222 22222 236
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
++.|+.|+|.+ .+|+|...|...+.|.++... +.....+.++++++|+|+|.++|+|
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l----------------------v~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDL----------------------VTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEeccccee----------------------EEEEecCCceEEEEEcCCCCEEEEe
Confidence 88999999999 999999999999999884322 2222337789999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+.|+.|+||-+....-.+..- ...+.++|+.+.|++ |+++|.+-+-|-.|..|....
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~------Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSS------DSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecC------CCceEEeccCceEEEEEcccc
Confidence 999999999987654443321 122348999999999 799999999999999995543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=165.05 Aligned_cols=227 Identities=15% Similarity=0.205 Sum_probs=166.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
+.+..+.|++++|+...+.||.+- ++.|-+|+....++... .-+-.+.|.+ |+ ++..|.+.+.+|+|.-||+..
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 355567899999999999999988 99999998877676654 2233445555 77 555688889999999999943
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... ++.+ +..+.+|++++.+|.+..+++|++||.+.+++...+.. .+. ..+
T Consensus 100 lk~--~~~~--------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I----------------~~~---r~l 150 (691)
T KOG2048|consen 100 LKQ--KYNI--------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI----------------TYK---RSL 150 (691)
T ss_pred Cce--eEEe--------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE----------------EEE---eec
Confidence 331 1222 24558999999999999999999999554444442111 111 233
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE-----eeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY-----QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~-----~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
....+.|.+|+|++++..+|.|+.||.|++||...+.-++ ......+...-|+++.|-. ...|++|.+
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------d~tI~sgDS 223 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------DSTIASGDS 223 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------cCcEEEecC
Confidence 3446889999999999999999999999999999998775 1222222344577777765 678999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCC
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQ 454 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~ 454 (826)
-|+|++||...|.++.++..|. ..+++|..-+..
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~---adVl~Lav~~~~ 257 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHD---ADVLALAVADNE 257 (691)
T ss_pred CceEEEEcccCcchhhhhhhhh---cceeEEEEcCCC
Confidence 9999999999999998865443 456676665543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=152.97 Aligned_cols=224 Identities=19% Similarity=0.197 Sum_probs=166.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC--eEEEec-CCcEEEeccCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS--FILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~--~l~~~~-d~~i~~w~~~~ 222 (826)
++++.++++-.|++||...- . ..-.+-.|.+.|+++.|.++-. .|++|+ ||.|.+|+.+.
T Consensus 54 ~~~aSGssDetI~IYDm~k~----------------~-qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKR----------------K-QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred eeEeccCCCCcEEEEeccch----------------h-hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 34455556667888887651 0 1223567899999999999876 888888 99999998764
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
=.......+|++.|+. .||.+++-++-+.|+++|+||+ .++. ..++.|+. .-+.|.|+|.|.+|+
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~-a~v~~L~~-----------~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV-AFVLNLKN-----------KATLVSWSPQGDHFV 184 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc-ceeeccCC-----------cceeeEEcCCCCEEE
Confidence 2222224789999988 9999999999999999999999 5443 22233331 234599999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+++.++ |-+|.+..... ......+..+.|+.|-.. ..|++|.+|+.|++||.....
T Consensus 185 v~~~~~-i~i~q~d~A~v----------------------~~~i~~~~r~l~~~~l~~-~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASV----------------------FREIENPKRILCATFLDG-SELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred EEeccE-EEEEecccHhH----------------------hhhhhccccceeeeecCC-ceEEEecCCceEEEeccCCCc
Confidence 998885 78999873321 111222344777777644 479999999999999999887
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+++.+ ..|...|..+.+... .++.+|+++++||.|+|||.+..
T Consensus 241 ~~~~~---~AH~~RVK~i~~~~~----~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEF---LAHENRVKDIASYTN----PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceee---ecchhheeeeEEEec----CCceEEEEeccCceEEEEEcccc
Confidence 77555 378999999986541 14789999999999999999865
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-16 Score=155.08 Aligned_cols=250 Identities=15% Similarity=0.128 Sum_probs=181.1
Q ss_pred EeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEE
Q 003360 120 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMK 199 (826)
Q Consensus 120 ~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~ 199 (826)
+..++...+.++.+.+. ...+++.+.+|.|.+||....+..+ .--|..++.+++
T Consensus 8 l~npP~d~IS~v~f~~~--------~~~LLvssWDgslrlYdv~~~~l~~------------------~~~~~~plL~c~ 61 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPS--------SSDLLVSSWDGSLRLYDVPANSLKL------------------KFKHGAPLLDCA 61 (323)
T ss_pred cCCCChhceeeEEEcCc--------CCcEEEEeccCcEEEEeccchhhhh------------------heecCCceeeee
Confidence 33444555565555433 3568899999999999987731100 135778999999
Q ss_pred EeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc
Q 003360 200 LITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 276 (826)
Q Consensus 200 fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~ 276 (826)
|..+ ..+++|+ |+.|+.++......... ..|..+|.| ..+....+++|+.|++|++||...... +..+
T Consensus 62 F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--~~~~----- 132 (323)
T KOG1036|consen 62 FADE-STIVTGGLDGQVRRYDLNTGNEDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--VGTF----- 132 (323)
T ss_pred ccCC-ceEEEeccCceEEEEEecCCcceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--cccc-----
Confidence 9874 4566666 99999997665444444 669999999 777788999999999999999954331 1111
Q ss_pred cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 277 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 277 ~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
..+..|.++... +..|++|..+..|.+||++...... + .+....+-++.|+++-|
T Consensus 133 ----d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~--------------q-----~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 133 ----DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF--------------Q-----RRESSLKYQTRCVALVP 187 (323)
T ss_pred ----ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh--------------h-----hccccceeEEEEEEEec
Confidence 122478888764 5689999999999999999543210 1 22333456799999999
Q ss_pred CCCEEEEEecCCeEEEEecCCC----eeEEeeecccCC------CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGP----TVLYQKHIASDI------SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~----~~l~~~~~~~~~------~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
++.-.|+++-||.|.|=.+... +.-|.+.+.... --||.+|+|+|. ...+++|+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc------cceEEecCCCceEEEccC
Confidence 8888999999999988776554 233444443221 137999999996 788999999999999999
Q ss_pred CCCceEEee
Q 003360 427 DNGNMLSTN 435 (826)
Q Consensus 427 ~tg~~i~~~ 435 (826)
.+-+.+..+
T Consensus 262 ~~rKrl~q~ 270 (323)
T KOG1036|consen 262 FNRKRLKQL 270 (323)
T ss_pred cchhhhhhc
Confidence 988877764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=164.85 Aligned_cols=204 Identities=16% Similarity=0.240 Sum_probs=150.5
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
..+.....++++++++.++ .|.|.+....+..+... ....|.|.. |+.+++.|+..+.+|.|.+||+..+.. ++
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--~~ 380 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--LH 380 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--EE
Confidence 4566677899999999988 99999886665444433 345677766 999999999999999999999955542 22
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
....+ . ...-+.++.++++.+||+|+..|.|.|||.+...... .-.+. .....+...|
T Consensus 381 rf~D~--G-----~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~-----------~PkPi----k~~dNLtt~I 438 (514)
T KOG2055|consen 381 RFVDD--G-----SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST-----------NPKPI----KTVDNLTTAI 438 (514)
T ss_pred EEeec--C-----ccceeeeeecCCCceEEeccCcceEEEeccchhhccC-----------CCCch----hhhhhhheee
Confidence 22211 1 1123566777999999999999999999976331100 00110 1223346679
Q ss_pred EEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 350 ISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++|+|++++++||++|. +..+|+..+.+.++...+......-+.|+|++|+|. +.+|++|..+|.|.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~------sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN------SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC------CceEEeecCCCceeeEeec
Confidence 99999999999999884 568999999888877555544455577999999994 9999999999999999864
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=164.07 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=165.7
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---------------eeec--cc-ccCCccee--eCCCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---------------LLDF--ET-KLKDGSQS--HSKVKN 244 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---------------~~~~--~~-~h~g~V~~--~s~~~~ 244 (826)
..+..|.-+|+++++++++.+.++++ +++|.-|+..... ...+ .+ .|...+.+ .++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 44567889999999999999999999 9999988432211 0111 22 57777777 999999
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+|+||+.|..|.|||...... ...+.+|..+|.+++|-..+..|++++.|+.|++|++....+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh----------v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v------ 279 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH----------VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV------ 279 (479)
T ss_pred EEEecCCCceEEEecCcccch----------hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH------
Confidence 999999999999999944331 2235689999999999999999999999999999999733221
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeeccc
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
-.+..|++.|.+|....-++.+-+|..|+++++|++..-.-+ +..++.+.+-|++|..
T Consensus 280 ---------------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In--- 337 (479)
T KOG0299|consen 280 ---------------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFIN--- 337 (479)
T ss_pred ---------------HHHhCCccceeeechhcccceEEeccccceeEEEecccccee----eeeCCCCCeeeEEEec---
Confidence 223456778999999888888888889999999999544333 1236678899999987
Q ss_pred CCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+++|+.||.|.+|++..-+.+.+..
T Consensus 338 ----~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 338 ----DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ----ccceeeccCCceEEEeeecccCceeEee
Confidence 7889999999999999999888887753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=175.72 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=144.6
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccC----CCc-eeecccccCCccee----eC-CCCCEEEEEECCCcEEEEeCCC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKS----VPP-LLDFETKLKDGSQS----HS-KVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~----~~~-~~~~~~~h~g~V~~----~s-~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
....+++..++-..++.++...+.+|... ... ...+....+--..+ |+ -+.++|||++..|.|-+||+..
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34566667788888888887777777321 111 11111111111222 44 3568999999999999999943
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.. ++.....|..|...|+++.|++. ..+|++|++||+|++||++..... ..
T Consensus 120 ~~-------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~---------------------~t 171 (839)
T KOG0269|consen 120 SI-------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK---------------------ST 171 (839)
T ss_pred cc-------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------cc
Confidence 11 11112235679999999999985 578999999999999999955331 11
Q ss_pred EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+......|+.++|+| .+..++++++.|.+.+||+|++..- ......|.++|.++.|+| +..+|++||.|++
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~--~~k~~AH~GpV~c~nwhP------nr~~lATGGRDK~ 243 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC--EKKLTAHNGPVLCLNWHP------NREWLATGGRDKM 243 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--HHHhhcccCceEEEeecC------CCceeeecCCCcc
Confidence 112245699999998 4678999999999999999998644 122247999999999999 5999999999999
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
|+|||..+++
T Consensus 244 vkiWd~t~~~ 253 (839)
T KOG0269|consen 244 VKIWDMTDSR 253 (839)
T ss_pred EEEEeccCCC
Confidence 9999998654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=165.73 Aligned_cols=215 Identities=16% Similarity=0.182 Sum_probs=169.8
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
.++|.|++-+++|.+++.|. .+.+-+|....+.++.+...|-..|+| |+-|+.+|+||+.||.|.+|++..-.- ..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~-a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS-AD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc-cc
Confidence 35799999999999999997 999999987777777766889999999 999999999999999999999721110 00
Q ss_pred eecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
..-.......+..|.-+|+.+...+. ...|+++|.|.++++||+..+.. +.....+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L----------------------Llti~fp 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL----------------------LLTITFP 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee----------------------eEEEecC
Confidence 00011112235678899999998765 46899999999999999985533 4445557
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-----------E--EeeecccCCCC--CeeEEEEeecccCCCCCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-----------L--YQKHIASDISS--GIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-----------l--~~~~~~~~~~~--~V~sl~f~~~~~~~~d~~~ 411 (826)
..+.+++.+|.+..+.+|+++|.|.+.++.+..- . -......+|.. +|+|++.+. |+..
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------Dgtl 291 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------DGTL 291 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec------CccE
Confidence 8899999999999999999999999998854330 0 01122345655 999999998 7999
Q ss_pred EEEEECCCcEEEEECCCCceEEee
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
|++|+.||.|.|||..+-++++++
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHH
Confidence 999999999999999998888875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=151.57 Aligned_cols=234 Identities=12% Similarity=0.163 Sum_probs=175.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
.+...++++.+.+++...- . .......|.+|.++|+.++|.. -|..|++++ |+.|.+|+...+
T Consensus 25 rlATcsSD~tVkIf~v~~n-------~-------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNN-------G-------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred eeeeecCCccEEEEEEcCC-------C-------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 4566777888888776541 0 1235567899999999999976 789999999 999999976543
Q ss_pred c-eeec-ccccCCccee----eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeCC--
Q 003360 224 P-LLDF-ETKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-- 294 (826)
Q Consensus 224 ~-~~~~-~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-- 294 (826)
. .... ...|.+.|++ .+.+|-+|++|+.||.|.|.++... .. .....+..|...|++++|+|.
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--------~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--------TTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--------cchhhhhccccccceeeecCcCC
Confidence 2 2222 2568999988 4567889999999999999998332 21 001223578899999999996
Q ss_pred -C-----------CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----
Q 003360 295 -S-----------RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---- 358 (826)
Q Consensus 295 -~-----------~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---- 358 (826)
+ +.|++|+.|..|+||++..+.... . -.+..|.+-|+.++|.|.-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--------------e-----~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--------------E-----RTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhh--------------h-----hhhhhcchhhhhhhhccccCCCc
Confidence 3 459999999999999998542211 0 1244567789999999964
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+|++++||+|.||-.+.-.-.....+......++.++.|+.. +++|++++.|+.|.+|-..
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s------Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS------GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc------ccEEEEecCCcEEEEEEeC
Confidence 46999999999999987633223333444456778999999995 9999999999999999866
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=177.45 Aligned_cols=234 Identities=16% Similarity=0.193 Sum_probs=173.8
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS 221 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~ 221 (826)
....+.+....|.|.+||.... ..+.....+..|+-.|+++.|++..+.++ +|+ |++|++|+.+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~--------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS--------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc--------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 3456677888999999999761 01222234578999999999998776655 566 9999999765
Q ss_pred CCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
...-.....+....|.. |+| ++..+++++..|.+++||+..+.+ + +..+..|.++|.|+.|+|+..+|
T Consensus 165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~------~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---C------EKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh---H------HHHhhcccCceEEEeecCCCcee
Confidence 43322222344555655 776 577999999999999999955442 1 23356899999999999999999
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEe--cCCeEEEEec
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGS--DQGYVYLLDT 375 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs--~dG~V~vwD~ 375 (826)
|+|+.|++|+||++..+... . ........+|.++.|-|... +||+++ .|-.|+|||+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~--------------~------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAK--------------P------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred eecCCCccEEEEeccCCCcc--------------c------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 99999999999999844221 1 22223356899999999765 466665 4778999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.+-+.+.. ...|...++.++|... |...+++++.||+|..-..+
T Consensus 296 rRPYIP~~t--~~eH~~~vt~i~W~~~-----d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 296 RRPYIPYAT--FLEHTDSVTGIAWDSG-----DRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cccccccee--eeccCccccceeccCC-----CceeeEeecCccHHHHhhhh
Confidence 998877433 3578899999999874 67899999999988544333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-17 Score=163.45 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=182.5
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
++.++..|-..|.|++-|+..-+.+|+|+-||.|+|||+......++. ..+..+|.-+....
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f----------------~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF----------------KAHEGLVRGICVTQ-- 119 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee----------------ecccCceeeEEecc--
Confidence 456667777899999996433489999999999999999885222221 12223444443221
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCC-CCCCCceEEEeccCccEEEecch
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDP-NKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~-~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+..+.+|.+ ..+..|.++.. ..++ ++..+.+. -+++...-+..+..-++.+||..
T Consensus 120 ---~~~~tvgdD-----KtvK~wk~~~~-p~~t---------------ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~ 175 (433)
T KOG0268|consen 120 ---TSFFTVGDD-----KTVKQWKIDGP-PLHT---------------ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQ 175 (433)
T ss_pred ---cceEEecCC-----cceeeeeccCC-ccee---------------eeccccccccccccccccccccCceeeecccc
Confidence 333333333 23444444332 0111 11111111 11211222334455578899986
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCcee-ecccccCCcceeeC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLL-DFETKLKDGSQSHS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~~s 240 (826)
.. .+..++.+-.+.|.+++|+|....++. +. |+.|.+|+....... .....-...-.||+
T Consensus 176 R~-----------------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn 238 (433)
T KOG0268|consen 176 RD-----------------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWN 238 (433)
T ss_pred cC-----------------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecC
Confidence 51 012346778889999999998876665 43 999999976543222 11111111122399
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|..-.+++|.+|..+..+|+..-.. + ......|..+|..|+|+|.|+.|++||.|.+|+||..+.+...
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~-p--------~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR-- 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSR-P--------LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR-- 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcc-c--------chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch--
Confidence 9888999999999999999832210 1 1223568899999999999999999999999999999854321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+ +-..+--+.|.|+.||.|.+++++||+|+.|++|-..-..
T Consensus 308 ----------d--------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 308 ----------D--------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ----------h--------hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 0 1011113459999999999999999999999999875443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=162.44 Aligned_cols=208 Identities=17% Similarity=0.263 Sum_probs=154.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccC-----------------CCceeecccccCCccee--eCCCCC-
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKS-----------------VPPLLDFETKLKDGSQS--HSKVKN- 244 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~-----------------~~~~~~~~~~h~g~V~~--~s~~~~- 244 (826)
...|.+.+..+...+-+.-.++++ .|.|.+|+.. ..++.++ .+|.+.=.+ |+|--.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccc
Confidence 456777777777777654444433 6789999522 1233333 456654444 888333
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
.|+||-.-+.|++|..+.... .+. ...+.+|..+|-.|+|+|. ...|++||.||+|+|||++.++..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W----~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~----- 293 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSW----KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK----- 293 (440)
T ss_pred ccccCccccceEeeeeccCce----eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-----
Confidence 488888889999999955552 222 3346779999999999995 579999999999999999965331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.+ +....|++.|..|.|+....+||+|++||+++|||+|+.+.-........|..+|+++.|+|.
T Consensus 294 ----------~~----~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~- 358 (440)
T KOG0302|consen 294 ----------AA----VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH- 358 (440)
T ss_pred ----------ce----eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc-
Confidence 11 444667889999999999889999999999999999875432111222368899999999997
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+...|++++.|..|.+||+.
T Consensus 359 ----e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 359 ----EDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ----cCceEEeccCCCcEEEEEee
Confidence 67889999999999999987
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=159.70 Aligned_cols=371 Identities=12% Similarity=0.102 Sum_probs=231.6
Q ss_pred cccccccccceEEEecCCCC--CEEEEEEecCcEEEEeCCCccccc---cccc--cccccccc--------cccCC--CC
Q 003360 7 QSVYHETKQVTSACWACPIG--SKVAVGYSNGEILIWGVPSILNLK---TEEC--GTQITPIC--------KLNLG--YK 69 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g--~~latg~~DGsI~iWd~~~~~~~~---~~~~--~~~~~~~~--------~~~~~--~~ 69 (826)
..+..|+-=|.++.|..+.| .+||++++|..|+||.+.-..... .... ...+.|.. ++.+. -.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 34455777899999988766 588999999999999987552110 0000 01112221 11111 12
Q ss_pred CCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcce--eEEEeecC--CCceeeEEEecCCCCCCCCCC
Q 003360 70 LDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESR--TTKLALPL--SEPCIDMEIISSSSDPNKPKQ 145 (826)
Q Consensus 70 ~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~--~~~~~l~~--~~~~~d~~~l~~~~~~~~~~~ 145 (826)
.|..-|..+.|.. .+..+++... +..+-+|.-+..++.- .+++.--- .+-|-+..+.+ +.
T Consensus 265 GHeDWV~sv~W~p----~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--------n~ 328 (764)
T KOG1063|consen 265 GHEDWVYSVWWHP----EGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--------NS 328 (764)
T ss_pred CcccceEEEEEcc----chhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--------CC
Confidence 3556677888865 2322233222 2345555555555442 22222111 11123332322 22
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--C
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--V 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~ 222 (826)
..++.-+-.|-+++|-...- . .......+.+|-..|+.+.|.|.|.++++.+ |.+-|++..- .
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~---------~-----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDK---------T-----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred CEEEEecccCcEEEEeccCc---------c-----ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 55667777899999972220 0 0111233689999999999999999999998 9999888322 1
Q ss_pred Cceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce------------------------------eee
Q 003360 223 PPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF------------------------------LLI 268 (826)
Q Consensus 223 ~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~------------------------------~~i 268 (826)
..-..+ ..-|...+.| +-+..-.+++|.+...+|++++..... ..+
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 122233 2336666777 444466788888888999998521000 000
Q ss_pred ee-----------------------cc-------------cccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cE
Q 003360 269 LS-----------------------LK-------------QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MV 307 (826)
Q Consensus 269 ~~-----------------------l~-------------~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V 307 (826)
+. +. .+.+..+-+|+..|.+++.+|++.++|++.... .|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00 00 001123457889999999999999999987653 57
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE-Eeeec
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHI 386 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l-~~~~~ 386 (826)
++|+...-... -....|.-.|+.|+|||||++|++.+.|.++.+|........ +.+..
T Consensus 555 ~lw~t~~W~~~---------------------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~ 613 (764)
T KOG1063|consen 555 RLWNTANWLQV---------------------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC 613 (764)
T ss_pred EEEeccchhhh---------------------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc
Confidence 88886532210 123345557999999999999999999999999988433222 23344
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC--ceEEe
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG--NMLST 434 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg--~~i~~ 434 (826)
...|..-|+...|+| ++.+++++|.|.+|++|....+ +++..
T Consensus 614 ~k~HtRIIWdcsW~p------de~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 614 LKAHTRIIWDCSWSP------DEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred ccccceEEEEcccCc------ccceeEEecCCceEEEEeccCchhhhhhh
Confidence 567888899999999 5888999999999999999877 55544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=163.85 Aligned_cols=319 Identities=15% Similarity=0.181 Sum_probs=204.3
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|.|+.- .|.|..||+|+.||+|++|.+.++.- +..+++.. -|.+|+|+. .+.-+.
T Consensus 397 rGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRc------------vr~~~~d~-----~I~~vaw~P-~~~~~v 457 (733)
T KOG0650|consen 397 RGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRC------------VRTVQFDS-----EIRSVAWNP-LSDLCV 457 (733)
T ss_pred eccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceE------------EEEEeecc-----eeEEEEecC-CCCcee
Confidence 346778889996 57999999999999999999999833 33333322 588999987 334455
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
|.++-|.. ++.++..-+.+ +.....+- ++.+.+ ... ..++++..|......
T Consensus 458 LAvA~~~~--------~~ivnp~~G~~-------~e~~~t~e-ll~~~~--~~~--------~p~~~~~~W~~~~~~--- 508 (733)
T KOG0650|consen 458 LAVAVGEC--------VLIVNPIFGDR-------LEVGPTKE-LLASAP--NES--------EPDAAVVTWSRASLD--- 508 (733)
T ss_pred EEEEecCc--------eEEeCccccch-------hhhcchhh-hhhcCC--Ccc--------CCcccceeechhhhh---
Confidence 55555441 12121111100 00000000 010000 000 112355566655421
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-C--cEEEeccCC-CceeecccccCCccee--eCCC
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-E--DYSLLAKSV-PPLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-~--~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~ 242 (826)
...+ -.. ..-.|...|+.+.|+..|+++++.. + + .|.+..... .....| ....|-|.+ |+|.
T Consensus 509 --e~~~-------~v~-~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs 577 (733)
T KOG0650|consen 509 --ELEK-------GVC-IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPS 577 (733)
T ss_pred --hhcc-------ceE-EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCC
Confidence 1101 111 2345778999999999999999965 3 2 344442211 112333 233455555 9999
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
..+|+++++. .|||||+....+ +.++. .....|..++.+|.|..|+.|+.|+.+..||+.-+..
T Consensus 578 ~p~lfVaTq~-~vRiYdL~kqel--vKkL~--------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk----- 641 (733)
T KOG0650|consen 578 KPYLFVATQR-SVRIYDLSKQEL--VKKLL--------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK----- 641 (733)
T ss_pred CceEEEEecc-ceEEEehhHHHH--HHHHh--------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-----
Confidence 9999988875 899999955542 22222 2335899999999999999999999999999984422
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe------cCCCeeEEeeecccCCCC----
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD------TEGPTVLYQKHIASDISS---- 392 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD------~~~~~~l~~~~~~~~~~~---- 392 (826)
+. -.+..|...|++++|++...++++|+.||++.|+. +.+.-++.-.....+|..
T Consensus 642 -----------Py----k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 642 -----------PY----KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred -----------hh----HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 10 12234567799999999999999999999999984 333334444444455544
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
.|....|+|. ..+|++++.||+|++|
T Consensus 707 gVLd~~wHP~------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 707 GVLDTIWHPR------QPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeecccCC------CceEEecCCCceEEee
Confidence 4888999995 8999999999999998
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=154.29 Aligned_cols=237 Identities=14% Similarity=0.155 Sum_probs=163.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccC-C
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKS-V 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~-~ 222 (826)
......+..|++.+||....-..+...+ ...........++...|...=..+.|||-... +++|. -+.|.+|... .
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~-~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPG-LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCcc-ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 4445667889999999987544332222 11111244455677889988899999994443 34444 5678999432 2
Q ss_pred Cceeec--ccccCCccee--eCCCC-CEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 223 PPLLDF--ETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 223 ~~~~~~--~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
.|...- ..+|+..|.. |+|.. ..+++|+.||+|||||+ +++....++. +.|..-|+.|+|+..-.
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---------kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---------KAHNSDVNVISWNRREP 315 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---------eccCCceeeEEccCCcc
Confidence 232221 2569999988 88865 48999999999999999 5544322222 46889999999999888
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~ 375 (826)
+||+|+.||+++|||++.-+. +.++ ..+..|+.+|++|.|+|. ...+++++.|.+|.+||+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~--------------~~pV----A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKS--------------GQPV----ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeecCCCceEEEEEhhhccC--------------CCcc----eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 999999999999999994322 1121 556678999999999984 457888899999999998
Q ss_pred CCC-------------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 376 EGP-------------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 376 ~~~-------------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.-- +++|. +.-...|..+.|++. -..+|++.+.||
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFV----HqGQke~KevhWH~Q-----iPG~lvsTa~dG 431 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFV----HQGQKEVKEVHWHRQ-----IPGLLVSTAIDG 431 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEE----ecchhHhhhheeccC-----CCCeEEEecccc
Confidence 421 12221 122335667777774 256777777777
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=157.77 Aligned_cols=187 Identities=19% Similarity=0.338 Sum_probs=141.0
Q ss_pred CCCeEEEec-CCcEEEeccCC----Cceeec-----------------ccccCCccee--eC-CCCCEEEEEECCCcEEE
Q 003360 203 GNSFILSSA-DEDYSLLAKSV----PPLLDF-----------------ETKLKDGSQS--HS-KVKNLFITGHSDGAINF 257 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~----~~~~~~-----------------~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVri 257 (826)
.|.++|.|. |-.|-+|+... -+...+ ..+|+..|.+ |. ..+++||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367888888 99999995321 011111 1357777766 33 35679999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
||+..... ...+..|+..|.++.|+|. ...|++|+.|++|+++|.+.....
T Consensus 271 WD~~~g~p----------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------ 322 (463)
T KOG0270|consen 271 WDVDTGKP----------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------ 322 (463)
T ss_pred EEcCCCCc----------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc------------------
Confidence 99944331 1223457899999999996 578999999999999999842221
Q ss_pred EEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCC-eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGP-TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~-~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-+.....+.|-.++|.|... .++++..||+|+-+|+|+. +++++.. .|..+|.+|+++.. ...++.+
T Consensus 323 ---~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-----~p~~l~t 391 (463)
T KOG0270|consen 323 ---GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-----TPGLLST 391 (463)
T ss_pred ---CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-----CCcceee
Confidence 12223467899999988654 5677889999999999987 7777765 78889999999885 3678999
Q ss_pred EECCCcEEEEECCC
Q 003360 415 ATKDSSVLVLDSDN 428 (826)
Q Consensus 415 gs~Dg~V~iwd~~t 428 (826)
++.|+.|++|+...
T Consensus 392 ~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDV 405 (463)
T ss_pred ccccceEEEEeecC
Confidence 99999999999874
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-15 Score=147.06 Aligned_cols=224 Identities=11% Similarity=0.102 Sum_probs=158.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-C--CCceeecccc-cCCccee--e-C-CCCCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-S--VPPLLDFETK-LKDGSQS--H-S-KVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~--~~~~~~~~~~-h~g~V~~--~-s-~~~~~l~Tgs~DGtVriWD 259 (826)
..|..-|+++.|.+-|+.+++++ |+++++|+. + ..+..+-.|. |.+.|+. | + ..|+.+|+++.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 57888999999999999999998 999999972 2 2344444443 8888887 3 3 4799999999999999998
Q ss_pred CC-------CCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCC------CC-------
Q 003360 260 VS-------CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYE------PH------- 317 (826)
Q Consensus 260 ~s-------~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~------~~------- 317 (826)
-. +.......+ +.-....|+.|.|+|. |..||+++.||+||||+.-.- +.
T Consensus 90 E~~~~~~~~~~~Wv~~tt--------l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTT--------LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred ecccccccccceeEEEEE--------eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 52 112211112 2234479999999995 778999999999999986432 00
Q ss_pred -----ccccceEEEeecCCCC-----------------eEEEEE-----------EEEeeccCCeEEEEEccC----CCE
Q 003360 318 -----AIENSFLSFTGSKKGN-----------------SHIIHS-----------VKVMKINGSIISLNMNRN----SQH 360 (826)
Q Consensus 318 -----~~~~~~~~i~~s~~~~-----------------~~~~~~-----------~~~~~~~~~V~~l~~s~~----g~~ 360 (826)
.+.....++++++... ...+.. .....+..+|++|+|.|+ +..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 0112223344432110 011111 112245778999999995 457
Q ss_pred EEEEecCCeEEEEecCCCe------------e-----EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 361 LAVGSDQGYVYLLDTEGPT------------V-----LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~------------~-----l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
||+++.|| |+||.+.... . +......++|.+.|+.+.|.-. |..|.+.+.||.|++
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt------GtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT------GTILSSTGDDGCVRL 314 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee------eeEEeecCCCceeee
Confidence 99999999 9999987311 1 1122335689999999999985 999999999999999
Q ss_pred EECC
Q 003360 424 LDSD 427 (826)
Q Consensus 424 wd~~ 427 (826)
|...
T Consensus 315 Wkan 318 (361)
T KOG2445|consen 315 WKAN 318 (361)
T ss_pred hhhh
Confidence 9875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=151.44 Aligned_cols=206 Identities=18% Similarity=0.224 Sum_probs=160.0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------------------------------C
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------------------------------P 223 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------------------------------~ 223 (826)
....+|.+.|++++|++.+..+++++ |++..+|.... .
T Consensus 184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 34579999999999999999999988 99999994100 0
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
++.. ..+|.+.|.+ |-..++.++|++.|.+..+||+...+. +..+.+|+...+.++-+|..++++++
T Consensus 264 Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----------v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 264 PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----------VNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCce----------eccccCcchhccccccCCcceEEEEe
Confidence 1111 2557777777 888999999999999999999955552 23346888899999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV- 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~- 380 (826)
+.|-+.++|||+.. +.++ ..+..|...|+++.|..+. .+++|++|.+|+|||+++..-
T Consensus 333 SrDtTFRLWDFRea-------I~sV-------------~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 333 SRDTTFRLWDFREA-------IQSV-------------AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred ccCceeEeccchhh-------ccee-------------eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc
Confidence 99999999999821 1111 4456678889999999887 599999999999999987543
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+.+. ...+++..++.+.. +.+|+.-..+..|++||++ |..+..
T Consensus 392 lATI----RtdS~~NRvavs~g------~~iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 392 LATI----RTDSPANRVAVSKG------HPIIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred ceee----ecCCccceeEeecC------CceEEeccCCceEEEEecC-CCcccc
Confidence 3222 34567888888872 5677777777899999998 555544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=139.59 Aligned_cols=198 Identities=12% Similarity=0.167 Sum_probs=154.2
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
.+|..+++. +..+|.+|.+++.|.++.+|-. .+.. ....++|.++|+|++.+.++..|++|+.|.+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------lGty~GHtGavW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------LGTYDGHTGAVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------eeeecCCCceEEEEEecCCcceeeeccccce
Confidence 679999988 9999999999999999999998 5544 2334689999999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-----CCeEEEEecCC----
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-----QGYVYLLDTEG---- 377 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-----dG~V~vwD~~~---- 377 (826)
++|||+.+++. +...+.+.+|..+.|+.+|++++...+ .+.|.++|++.
T Consensus 76 ~kLWDv~tGk~----------------------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 76 AKLWDVETGKQ----------------------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred eEEEEcCCCcE----------------------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 99999996544 556667889999999999998877765 36799999983
Q ss_pred ---CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe-eeccCCCCCcceEEEEecC
Q 003360 378 ---PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST-NLIHPKKPSRALFMQILNG 453 (826)
Q Consensus 378 ---~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~-~~~~~~~~~~~lsi~~l~~ 453 (826)
..+++... -+.+.+++.-|.+. +.+|++|..||.|.+||.++|+.+.. -..|.. .+-.|+
T Consensus 134 ~~s~ep~~kI~---t~~skit~a~Wg~l------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~---~Ind~q---- 197 (327)
T KOG0643|consen 134 IDSEEPYLKIP---TPDSKITSALWGPL------GETIIAGHEDGSISIYDARTGKELVDSDEEHSS---KINDLQ---- 197 (327)
T ss_pred hcccCceEEec---CCccceeeeeeccc------CCEEEEecCCCcEEEEEcccCceeeechhhhcc---cccccc----
Confidence 33443333 34478999999996 99999999999999999999965533 222221 111222
Q ss_pred CCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEeccc
Q 003360 454 QDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~sl~~ 500 (826)
+.++ --||..|.|.+.++|++..
T Consensus 198 ------------------------~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 198 ------------------------FSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ------------------------ccCCcceEEecccCccceeeeccc
Confidence 2223 3466677788999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=142.89 Aligned_cols=206 Identities=13% Similarity=0.202 Sum_probs=153.1
Q ss_pred ecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCc-----------ee----ecccccCCccee--eCC-CCCEEE
Q 003360 188 MPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPP-----------LL----DFETKLKDGSQS--HSK-VKNLFI 247 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~-----------~~----~~~~~h~g~V~~--~s~-~~~~l~ 247 (826)
...|.+.|..+..-+ .|+++++|+ |+.+.+|+.+... .. .-+.+|+-+|.+ |.| |.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 467889999999966 688999988 9999999533211 11 114567888887 666 455888
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---RVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+++-|.++++||..+-+....++++ ..|..-+++|-. -++|+|..|-.|++.|+..+.+.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me-----------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------ 181 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKME-----------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------ 181 (397)
T ss_pred cccccceEEEeecccceeeEEeecC-----------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------
Confidence 9999999999999544422222222 466677777743 36788888889999999976653
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE-EEEEecCCeEEEEecCCC-eeEEeee-----------cccCCC
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH-LAVGSDQGYVYLLDTEGP-TVLYQKH-----------IASDIS 391 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~-lasGs~dG~V~vwD~~~~-~~l~~~~-----------~~~~~~ 391 (826)
..+..|.+.|.++.|+|...+ ||+|+.||.|++||++.. .|...+. ....|.
T Consensus 182 ---------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~ 246 (397)
T KOG4283|consen 182 ---------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY 246 (397)
T ss_pred ---------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc
Confidence 234557888999999998765 689999999999999876 3332221 123466
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+.|..++|.. |+.++++++.|..+++|+..+|+-
T Consensus 247 gkvngla~tS------d~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 247 GKVNGLAWTS------DARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ceeeeeeecc------cchhhhhccCccceEEeecccCcc
Confidence 7788999988 699999999999999999998863
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=152.05 Aligned_cols=305 Identities=17% Similarity=0.233 Sum_probs=184.0
Q ss_pred cccccceEEEecCCCC-CEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 11 HETKQVTSACWACPIG-SKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g-~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
.....|+|+.||+... +.||+|..-|.|-|||+.+..... ..++. ...+..||..+.+...+.. .
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------d~v~~----f~~hs~~Vs~l~F~P~n~s--~ 249 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------DGVYL----FTPHSGPVSGLKFSPANTS--Q 249 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------CceEE----eccCCccccceEecCCChh--h
Confidence 3578999999997666 899999999999999997421000 01111 2234567888877664322 2
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+|...-+. .+....++..... ..+.+.. |-..++.. . -...+..++.+.+-|.+.+||...
T Consensus 250 i~ssSyDG-----tiR~~D~~~~i~e----~v~s~~~---d~~~fs~~-d-~~~e~~~vl~~~~~G~f~~iD~R~----- 310 (498)
T KOG4328|consen 250 IYSSSYDG-----TIRLQDFEGNISE----EVLSLDT---DNIWFSSL-D-FSAESRSVLFGDNVGNFNVIDLRT----- 310 (498)
T ss_pred eeeeccCc-----eeeeeeecchhhH----HHhhcCc---cceeeeec-c-ccCCCccEEEeecccceEEEEeec-----
Confidence 22221111 1112222111100 1111110 11111111 0 112234567777888899999877
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEE
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITG 249 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tg 249 (826)
.+.....+..|+-.|+.++++|.+++ +||||
T Consensus 311 -----------~~s~~~~~~lh~kKI~sv~~NP~~p~--------------------------------------~laT~ 341 (498)
T KOG4328|consen 311 -----------DGSEYENLRLHKKKITSVALNPVCPW--------------------------------------FLATA 341 (498)
T ss_pred -----------CCccchhhhhhhcccceeecCCCCch--------------------------------------heeec
Confidence 11112235678888999998887654 69999
Q ss_pred ECCCcEEEEeCCC--Ccee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 250 HSDGAINFWDVSC--PLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 250 s~DGtVriWD~s~--~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+.|++++|||+.. .... .+..+ .|..+|.+..|+|.+..|++.+.|..|+|||..--..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~---------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa--------- 403 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTL---------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA--------- 403 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecc---------cccceeeeeEEcCCCCceEeeccCCceEEeecccccc---------
Confidence 9999999999821 1111 12222 4778999999999998899999999999999841000
Q ss_pred eecCCC-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE-EEeeccc
Q 003360 327 TGSKKG-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL-QFETCSL 404 (826)
Q Consensus 327 ~~s~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl-~f~~~~~ 404 (826)
.+. ...+.|...++.+-. ..-..|.|+..++++|..-..|-|+|-..++.+..+. ......|.++ .|+|+
T Consensus 404 ---~~~p~~~I~Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~--~P~~~tI~~vn~~HP~-- 475 (498)
T KOG4328|consen 404 ---KDEPLGTIPHNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH--DPESSTIPSVNEFHPM-- 475 (498)
T ss_pred ---cCCccceeeccCccccccc-chhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc--Cccccccccceeeccc--
Confidence 010 011111122222222 3345799999999999999999999999998774433 3344456554 58886
Q ss_pred CCCCCc-EEEEEECCCcEEEEECC
Q 003360 405 QGFEKN-FLVIATKDSSVLVLDSD 427 (826)
Q Consensus 405 ~~~d~~-~l~sgs~Dg~V~iwd~~ 427 (826)
.. +++-++..|.|+||-..
T Consensus 476 ----~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 476 ----RDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ----ccceeccCCccceEEEEecC
Confidence 55 44444567888988765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=151.70 Aligned_cols=206 Identities=15% Similarity=0.204 Sum_probs=153.4
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
.+++.++..|.+-+||+.. .+ .+..+..|.+.|+++.|+-...++++++ .|.|.+.......
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~--kl---------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA--KL---------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred eeeeccCcCceeeehhhHH--HH---------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 5667788889999999975 12 2334678999999999999999999999 6778877544322
Q ss_pred eeecccccC-Ccce-e--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEE
Q 003360 225 LLDFETKLK-DGSQ-S--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVL 298 (826)
Q Consensus 225 ~~~~~~~h~-g~V~-~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~L 298 (826)
..+- ..|. |.+. - +++..+ +|.+++.+|.|.+||+.+... ++... ..|..+...|+|+|.. .+|
T Consensus 155 ~tt~-f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~-------~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 155 KTTT-FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHAS-------EAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred cccc-eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchh-------hhccCCcCcceecCCccceE
Confidence 2211 2232 2222 2 777554 788899999999999966552 12222 4688999999999976 577
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
++-+.|..|.+||.+.... ........|.++++|+++|.+|+.|+..|.|..||++..
T Consensus 225 vsVG~Dkki~~yD~~s~~s----------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQAS----------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred EEecccceEEEeecccccc----------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 8889999999999984322 222233668899999999999999999999999999976
Q ss_pred eeEEeeecccCCCCCeeEEEEeec
Q 003360 379 TVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
+-. ....+.|...|++++|.+.
T Consensus 283 k~P--v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 283 KAP--VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCC--ceEeeecccceeEEEeeec
Confidence 544 2333578888999999983
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=150.61 Aligned_cols=288 Identities=14% Similarity=0.136 Sum_probs=187.2
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEec--cCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCce
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLA--KSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~--~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+.|+++.|+|.-+.+++++ |+++++|. .+..+...-..--.-+|.+ |+|+|. .+++++.......||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999 99999993 3322222110112334444 999999 999999999999999943332
Q ss_pred eeeeecccccccccccC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLS-GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h-~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
..+..+. ++ ...+.....+|++.+++..+..|.|.|....++.. +...+
T Consensus 293 ~k~~~~~--------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----------------------i~s~K 342 (514)
T KOG2055|consen 293 TKLKPPY--------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----------------------ITSFK 342 (514)
T ss_pred ccccCCC--------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh----------------------hheee
Confidence 2211111 11 14566778899999999999999999988776544 44455
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
.++.|..++|+.+|+.|++.+.+|.|.+||+++..|++.+.- ...-.-++++-+. ++.+|++||..|.|.||
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G~v~gts~~~S~------ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DGSVHGTSLCISL------NGSYLATGSDSGIVNIY 414 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cCccceeeeeecC------CCceEEeccCcceEEEe
Confidence 688999999999999999999999999999999999976652 2222334555555 48899999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec---CcEEEEecccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE---KAACAYSLSHA 501 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se---~~irv~sl~~~ 501 (826)
|..+... . ..+.|...+ ..+......-.|.++.+++.+|+. +.+|+..+++
T Consensus 415 d~~s~~~--s---~~PkPik~~--------------------dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS- 468 (514)
T KOG2055|consen 415 DGNSCFA--S---TNPKPIKTV--------------------DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS- 468 (514)
T ss_pred ccchhhc--c---CCCCchhhh--------------------hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-
Confidence 9763211 1 111111100 000000000135566677777765 5799999884
Q ss_pred ccccceeeeeeecCCCCceeeEeee-eCCceEEEEEEeeceEEEecc
Q 003360 502 VQGVKKVLYKKKFHSSSCCWASTFY-SGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 502 ~~g~~k~~~k~~~~~~~c~~~~~~~-~~~~~~lv~~~~~G~I~i~sl 547 (826)
...+..-.-..........+. ++++--|++.-..|.+.+|-|
T Consensus 469 ----~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 469 ----CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ----eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 222221100001111111111 256666777778888877754
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=156.68 Aligned_cols=256 Identities=14% Similarity=0.178 Sum_probs=162.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...|++...+|.+.++|...+.- + +..........|...|..+++.|....|++++ |.+++.|+....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~f-----r------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVF-----R------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cceEEEecCCCceeeecchhhhc-----c------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34567888899999999887421 1 11111233468999999999999666777776 999999977654
Q ss_pred ceeec--ccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeec-------ccc----------ccccccc
Q 003360 224 PLLDF--ETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSL-------KQQ----------SEKDFSL 281 (826)
Q Consensus 224 ~~~~~--~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l-------~~~----------~~~~~~~ 281 (826)
.+... ..+|++.|.+ |++.. ..++||+.||.|.|||........+... ... ....-..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 44443 5789999988 87754 5899999999999999833221000000 000 0001112
Q ss_pred CCC----CeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---cCCeEEEE
Q 003360 282 SGI----PLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---NGSIISLN 353 (826)
Q Consensus 282 h~~----~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~ 353 (826)
+.. .|+.+.| .|...||+++. |+.|+|||++++.......... . .++..+ .-.+++|.
T Consensus 213 ~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------~-----~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------S-----DKYPTHSKRSVGQVNLI 278 (720)
T ss_pred ccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCc--------c-----cCccCcccceeeeEEEE
Confidence 333 3555554 56678888777 9999999999875432111100 0 011111 22478899
Q ss_pred EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 354 ~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
....|.+|.+.+.|++|++||+.+..+--... ..+ ..+.++.... ....|+.+|++|+.|...++|.+.+.+
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~-~sg--~~~~sf~vks--~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAE-FSG--KLNSSFYVKS--ELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhh-ccC--cccceeeeee--ecCCCCceEeccCCCcceeeeeecCcc
Confidence 99999999888889999999998654321110 011 1111111111 122379999999999999999998654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-13 Score=143.88 Aligned_cols=207 Identities=11% Similarity=0.118 Sum_probs=136.8
Q ss_pred EEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC-cEEEEeCCCCceeeee
Q 003360 195 ITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG-AINFWDVSCPLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-tVriWD~s~~~~~~i~ 269 (826)
+..+.|+++++.++++ . ++.+.+|+......... ..+...+.+ ++|++++++++..++ .+.+||...... +.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~ 151 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE-IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VD 151 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE-eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EE
Confidence 4567899999987664 4 78999997654332221 111222333 999999999998876 467789844332 11
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
.+. ....+.+++|+|+++.|+++ ..++.|++||++++... ..+.+...+ . ......
T Consensus 152 ~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~-------~--~~~~~~ 208 (300)
T TIGR03866 152 NVL---------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-----KKITFEIPG-------V--HPEAVQ 208 (300)
T ss_pred EEE---------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-----eeeeecccc-------c--ccccCC
Confidence 111 12345789999999988655 46999999999854321 111100000 0 000112
Q ss_pred eEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEEC
Q 003360 349 IISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDS 426 (826)
Q Consensus 349 V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~ 426 (826)
...++|+|++++++++ ..++.|.+||+.+++++.... +...+.++.|+| ++.+|+++ ..++.|++||.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~------~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTP------DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECC------CCCEEEEEcCCCCeEEEEEC
Confidence 4568899999986553 456789999999888763322 234688999998 58888876 46899999999
Q ss_pred CCCceEEeeec
Q 003360 427 DNGNMLSTNLI 437 (826)
Q Consensus 427 ~tg~~i~~~~~ 437 (826)
.+++++..+..
T Consensus 279 ~~~~~~~~~~~ 289 (300)
T TIGR03866 279 AALKVIKSIKV 289 (300)
T ss_pred CCCcEEEEEEc
Confidence 99999888754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-14 Score=156.99 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=182.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-CCCcee
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-SCPLFL 266 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~ 266 (826)
.|...-|.++|.++|.++.+++ |+.|+.|+.... ........+...|.+...+++.+++|+.+++|.+|.. ++..-.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 6777899999999999999988 999999965543 1111101144455556777789999999999999999 333310
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
. +..-..++++++|+.+|.++|.|+.|-.|++-++.... +. ..+..|.
T Consensus 91 i-----------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----------------~~----~~lrgh~ 138 (933)
T KOG1274|consen 91 I-----------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----------------QE----KVLRGHD 138 (933)
T ss_pred e-----------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----------------hh----eeecccC
Confidence 1 11122589999999999999999999999999987332 21 5677889
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC-----CCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
++|.+|.|+|.+.+||+.+.||.|+|||+.++.+.++..-... ....+..++|+| ++..+++...|+.|
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P------k~g~la~~~~d~~V 212 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP------KGGTLAVPPVDNTV 212 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC------CCCeEEeeccCCeE
Confidence 9999999999999999999999999999999988755432211 244567788999 58888888999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccc
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSH 500 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~ 500 (826)
++|+..++.....+ ..+.....++.. .|+|.+.|+.+++ +++|-||+...
T Consensus 213 kvy~r~~we~~f~L--r~~~~ss~~~~~---------------------------~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKL--RDKLSSSKFSDL---------------------------QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheee--cccccccceEEE---------------------------EEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999988877664 333333323322 3455666777665 56999999973
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-13 Score=141.59 Aligned_cols=273 Identities=12% Similarity=0.169 Sum_probs=170.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCce
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~ 225 (826)
++....+|.+++||..+- .....+..+. .+..++|+++++.++ ++. ++.+++|+......
T Consensus 4 ~~s~~~d~~v~~~d~~t~-----------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATL-----------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred EEEecCCCEEEEEECCCC-----------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 455667899999997551 0112233333 367799999999875 455 88999998655433
Q ss_pred eecccccCCccee-eCCCCCEEE-EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 226 LDFETKLKDGSQS-HSKVKNLFI-TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 226 ~~~~~~h~g~V~~-~s~~~~~l~-Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
......+...... ++|+++.++ ++..|+.|++||+..... +..+. +...+.+++|+|++.++++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 66 IGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIP---------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee---------CCCCcceEEECCCCCEEEEEec
Confidence 3211222222222 899998665 456789999999954431 22222 1234678999999999999988
Q ss_pred CC-cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeE
Q 003360 304 SG-MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg-~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l 381 (826)
++ .+.+||..+... .........+.+++|+++|++|+++ ..+|.|++||+.+++++
T Consensus 135 ~~~~~~~~d~~~~~~----------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 135 TTNMAHFIDTKTYEI----------------------VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCCeEEEEeCCCCeE----------------------EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 76 466778763321 1111223446789999999988655 46999999999998876
Q ss_pred Eeeeccc--CC--CCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCC
Q 003360 382 YQKHIAS--DI--SSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDG 456 (826)
Q Consensus 382 ~~~~~~~--~~--~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~ 456 (826)
....... .+ ......+.|++ ++.+++++ +.++.|.+||..+++.+...... ..+.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~------dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~------- 255 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTK------DGKTAFVALGPANRVAVVDAKTYEVLDYLLVG----QRVWQLA------- 255 (300)
T ss_pred eeeeecccccccccCCccceEECC------CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC----CCcceEE-------
Confidence 4433211 01 11234577877 57776554 55678999999988877553211 1122222
Q ss_pred cccCccccccccccCCCCCCCCCCCCCEEEEe-e-cCcEEEEeccccccccceeeeeeec
Q 003360 457 LARGANLSNVAGMNKGSPKENAVPKQWFVLLC-S-EKAACAYSLSHAVQGVKKVLYKKKF 514 (826)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-s-e~~irv~sl~~~~~g~~k~~~k~~~ 514 (826)
+++++.+|+++ . ++.|++|++. ..+.+..++.
T Consensus 256 ---------------------~~~~g~~l~~~~~~~~~i~v~d~~-----~~~~~~~~~~ 289 (300)
T TIGR03866 256 ---------------------FTPDEKYLLTTNGVSNDVSVIDVA-----ALKVIKSIKV 289 (300)
T ss_pred ---------------------ECCCCCEEEEEcCCCCeEEEEECC-----CCcEEEEEEc
Confidence 34455566554 3 5789999998 4444555443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-14 Score=152.85 Aligned_cols=276 Identities=16% Similarity=0.188 Sum_probs=200.9
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeee
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~ 270 (826)
.|..++|-|||..++.+.+..+.+|+...+.......+|+.-|.+ ++.+|+.+++|+.|..|.+|... .+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~------ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI------ 87 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce------
Confidence 688899999999999998888888976654444444899999999 99999999999999999999983 333
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeE
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSII 350 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~ 350 (826)
+++ .|++.|.|+.|+|-+..|++++-+. .-+|...... +...+....|.
T Consensus 88 LkY-------SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-----------------------V~K~kss~R~~ 136 (1081)
T KOG1538|consen 88 LKY-------SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-----------------------VSKHKSSSRII 136 (1081)
T ss_pred eee-------ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-----------------------HHhhhhheeEE
Confidence 453 3889999999999999999997663 4567654111 11112244689
Q ss_pred EEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 351 SLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+.+|..||++++.|-.||+|.+-+-.....+ ...-+.+.+++|++++|+|..-++ ....+.+..+..++.++.+. |+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~Nspiwsi~~~p~sg~G-~~di~aV~DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSNSPIWSICWNPSSGEG-RNDILAVADWGQTLSFYQLS-GK 213 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCCCCceEEEecCCCCCC-ccceEEEEeccceeEEEEec-ce
Confidence 9999999999999999999998865433222 244456789999999999975544 35688889999999999887 77
Q ss_pred eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeee
Q 003360 431 MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLY 510 (826)
Q Consensus 431 ~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~ 510 (826)
++..- -...-.+.|+++ +...+-+++.++++.+.+|.-....-|.
T Consensus 214 ~Igk~---r~L~FdP~CisY---------------------------f~NGEy~LiGGsdk~L~~fTR~GvrLGT----- 258 (1081)
T KOG1538|consen 214 QIGKD---RALNFDPCCISY---------------------------FTNGEYILLGGSDKQLSLFTRDGVRLGT----- 258 (1081)
T ss_pred eeccc---ccCCCCchhhee---------------------------ccCCcEEEEccCCCceEEEeecCeEEee-----
Confidence 77531 111122334333 3334456667788899999765322221
Q ss_pred eeecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccC
Q 003360 511 KKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 511 k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP 548 (826)
.. ..-.|+..+.. +++...++.++||+|-.+.|-
T Consensus 259 ---vg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 259 ---VG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---cc-ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 11 12236666666 899999999999999887654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=155.70 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=175.6
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC---------CCceeecccccCCccee--eCCCCCEEEEEECCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS---------VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG 253 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~---------~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG 253 (826)
+++..|.+.|+.+.|.+..+.+++++ |+++.+|+.+ ..++.+| .+|.|.|.| ..++++.+.+|+.||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCc
Confidence 46788999999999999999999999 9999999651 2355566 789999999 899999999999999
Q ss_pred cEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC--cc----ccceEEE
Q 003360 254 AINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH--AI----ENSFLSF 326 (826)
Q Consensus 254 tVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~--~~----~~~~~~i 326 (826)
+||.|++. .....-.++.. .-...+.+|...|+.+++++....|++++.||+|++|+...... .. .....++
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 99999763 11100001000 00223568999999999999999999999999999999875422 00 0001111
Q ss_pred eecCCCCeEE----------------EEEEEEeec--------cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 327 TGSKKGNSHI----------------IHSVKVMKI--------NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 327 ~~s~~~~~~~----------------~~~~~~~~~--------~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.+......+. ...+++... ...+.-+.++|.+.+..++-+|+.|+++|..++.+++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 1110000000 000111111 2347778889999999999999999999999999996
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
... .|...++++++.+ ++.+|++++.|+.|++|.+....++.....|
T Consensus 526 s~~---a~~~svtslai~~------ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 526 SMV---AHKDSVTSLAIDP------NGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred hee---eccceecceeecC------CCceEEeecCCceeehhhccchheeeccccc
Confidence 654 6788999999999 4999999999999999999866666544333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-15 Score=165.13 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=153.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~ 263 (826)
+..|+++|.++.|++....+++|. +++|++|+...........+|...+.+ |+|.+.+.+.|+.|+-+++||.. .+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 689999999999999999999998 999999987654433333788888877 99999999999999999999994 33
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. .+. +..|...|.++.|+|+|+++++|+.|.+|+|||...+... -.+.
T Consensus 146 c---~~~--------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---------------------~ef~ 193 (825)
T KOG0267|consen 146 C---SHT--------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---------------------KEFK 193 (825)
T ss_pred c---eee--------ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc---------------------cccc
Confidence 3 111 2457788999999999999999999999999999855431 1223
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.|.+.|.++.|+|..-+++.|+.|++|++||+++..++-... .....|.++.|.+ ++..+.+|-.+
T Consensus 194 ~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~------~~~~~~~G~q~ 259 (825)
T KOG0267|consen 194 SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNP------DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecC------CceeeecCchh
Confidence 367889999999999999999999999999999888873332 3367899999999 46666655443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=135.70 Aligned_cols=195 Identities=14% Similarity=0.252 Sum_probs=133.2
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|++.|.+||+|..||.|-|||+.+... ...+..|-.+|++++|+++|+.|+++|.|..|.+||+..+..
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~i----------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~- 99 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRI----------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP- 99 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccch----------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-
Confidence 999999999999999999999943331 223457888999999999999999999999999999995543
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCCCeeEE-eeecccCCCCCeeE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVS 396 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~s 396 (826)
++.....++|+...|+|.....++ .-.+..-.+.++..+.-.+ ........+..-.+
T Consensus 100 ---------------------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 100 ---------------------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASH 158 (405)
T ss_pred ---------------------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccc
Confidence 444555889999999985443332 2233345566665443221 11100111111122
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKE 476 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (826)
..|.. .|.++++|+.-|.+.++|..|-+++.++........ -.+.+
T Consensus 159 ~~fdr------~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~I--K~I~~-------------------------- 204 (405)
T KOG1273|consen 159 GVFDR------RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAI--KQIIV-------------------------- 204 (405)
T ss_pred ccccC------CCCEEEEecCcceEEEEecchheeeeeeeechheee--eEEEE--------------------------
Confidence 23555 399999999999999999999999988754331111 11111
Q ss_pred CCCCCCCEEEEeecCcEEEEeccc
Q 003360 477 NAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 477 ~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
......+++-|+|+.||.|++..
T Consensus 205 -s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 205 -SRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred -eccCcEEEEecCCceEEEEehhh
Confidence 11123577889999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-13 Score=141.36 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=151.2
Q ss_pred ecccCCCEEEEEEeeCCC-eEEE-ec-CCcEEEeccCC-----CceeecccccCCccee--eCCCC-CEEEEEECCCcEE
Q 003360 188 MPFLDSSITAMKLITGNS-FILS-SA-DEDYSLLAKSV-----PPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAIN 256 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~-~~-d~~i~~w~~~~-----~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVr 256 (826)
...+...|++++|+|... .+++ |. .|.|-+|+-+. ..+.- ..+|.+.|.+ |+|.. ..+++.+.||+||
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeeeccCceee
Confidence 356788999999999876 5555 44 78999997642 12233 3789999999 77754 5888999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
+=|+.+.....++.+. .....+..+.|+.+.+.++.|..=|...+||++++....
T Consensus 261 ~~D~~~~i~e~v~s~~--------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~----------------- 315 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLD--------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY----------------- 315 (498)
T ss_pred eeeecchhhHHHhhcC--------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-----------------
Confidence 9999666533333332 123567888899999999999888899999999654311
Q ss_pred EEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEe-eecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQ-KHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~-~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.....|...|++|+++|.. .++|+++-|++++|||+++-.--.. +-..-.|..+|.+..|+|. +..|++
T Consensus 316 ---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs------~gtl~T 386 (498)
T KOG4328|consen 316 ---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS------GGTLLT 386 (498)
T ss_pred ---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC------CCceEe
Confidence 2223345689999999965 4689999999999999986321110 0011268889999999995 555999
Q ss_pred EECCCcEEEEECC
Q 003360 415 ATKDSSVLVLDSD 427 (826)
Q Consensus 415 gs~Dg~V~iwd~~ 427 (826)
-+.|..|+|||..
T Consensus 387 T~~D~~IRv~dss 399 (498)
T KOG4328|consen 387 TCQDNEIRVFDSS 399 (498)
T ss_pred eccCCceEEeecc
Confidence 9999999999974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=143.27 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCcEEEEeCC-CCceeeeeecc----------cccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEE
Q 003360 242 VKNLFITGHSDGAINFWDVS-CPLFLLILSLK----------QQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRI 309 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~----------~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~i 309 (826)
-|+++|.|+.|..|.|||+. -....|...|. .........|..+|-.|+|+..- ..|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46899999999999999982 11111222222 01111234688899999998864 68999999999999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
||+.++++ .+... |.+.|.++.|+| ....|++|+.||+|++.|.|.+...- ..
T Consensus 271 WD~~~g~p----------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~ 325 (463)
T KOG0270|consen 271 WDVDTGKP----------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KE 325 (463)
T ss_pred EEcCCCCc----------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ce
Confidence 99997655 33333 567899999988 46789999999999999999644331 11
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC-ceEEeeeccCCCCCcceEEEEecCCCCcccCcccccc
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNV 466 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg-~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~ 466 (826)
-...+.|-.+.|.+. ....+++++.||+|+-+|.++. +++.++..|... ...++....
T Consensus 326 wk~~g~VEkv~w~~~-----se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~-ISgl~~n~~--------------- 384 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPH-----SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE-ISGLSVNIQ--------------- 384 (463)
T ss_pred EEeccceEEEEecCC-----CceeEEEecCCceEEeeecCCCCCceeEEEeccCC-cceEEecCC---------------
Confidence 134457889999986 4677888999999999999864 777776555542 222221111
Q ss_pred ccccCCCCCCCCCCCCCEEEEeecCcEEEEeccc
Q 003360 467 AGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
..+.++..++++.+++|++..
T Consensus 385 -------------~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 385 -------------TPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred -------------CCcceeeccccceEEEEeecC
Confidence 112355666788999999973
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-13 Score=133.00 Aligned_cols=183 Identities=13% Similarity=0.177 Sum_probs=126.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCC-c----eeec---ccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVP-P----LLDF---ETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~-~----~~~~---~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~ 263 (826)
-.+++|+|||..|++|-...|++++...+ . ..++ +.+..|-+.+ |+|... .++.|+.-.++-|+.-.+.
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 35789999999999998999999975321 1 1111 2233455555 888554 8999999999988887444
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ++.+ -+|++.|+.+.|+++|..|.+|+. |..|..||++..... + ..+
T Consensus 241 ~p--l~ll--------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v----------------~~L 290 (406)
T KOG2919|consen 241 RP--LQLL--------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----V----------------YAL 290 (406)
T ss_pred Cc--eeee--------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----h----------------hhh
Confidence 42 2223 368899999999999999999987 678999999844221 0 111
Q ss_pred eeccC-C--eEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 343 MKING-S--IISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 343 ~~~~~-~--V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
..|.+ . =.-....|.+++||+|+.||.|++||+.+ +..+... ..++..|..+++.|. =+++++++
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP~------mpilatss 359 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNPI------MPILATSS 359 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCcc------cceeeecc
Confidence 11211 1 11234578999999999999999999988 4423222 356778888999984 45555554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-12 Score=129.91 Aligned_cols=177 Identities=19% Similarity=0.230 Sum_probs=116.8
Q ss_pred eeecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCceeecccc--------------cCCccee--eCCC---C
Q 003360 186 LKMPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPPLLDFETK--------------LKDGSQS--HSKV---K 243 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~~~~~~~~--------------h~g~V~~--~s~~---~ 243 (826)
-++....+.|+.++|.|. |-.+++++ ||++|+|..-.+.-+.. |. +.....| |++. .
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 345666789999999985 55566777 99999995432211111 22 2223333 5543 3
Q ss_pred CEEEEEECC-----CcEEEEeCC--CCceeeeeecccccccccccCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEEe
Q 003360 244 NLFITGHSD-----GAINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS----RVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 244 ~~l~Tgs~D-----GtVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~----~~Lasgs~dg~V~iwd~ 312 (826)
.+||.|+.+ +.++||... ++.... ...+..|..+|+.|+|.|.- .+||+++.|| |+||++
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--------va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--------VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeee--------ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 588888877 689999982 223212 33445788999999999974 5799999999 999999
Q ss_pred CCCCCcc-ccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 313 KYEPHAI-ENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 313 ~~~~~~~-~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
+.-.... +..+. .+..-..+.++.+. +..|++.|..+.|+-.|..|++.+.||.||+|..
T Consensus 256 ~~~~s~i~~ee~~---~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 256 KVARSAIEEEEVL---APDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeccchhhhhccc---CCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 8431100 00000 00000112222233 5678899999999999999999999999999975
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=161.45 Aligned_cols=231 Identities=13% Similarity=0.210 Sum_probs=163.6
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeec
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDF 228 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~ 228 (826)
++.+|.|.+||...+. ... ......+..-|.++|..+.|++... .+++|+ ++.|.+|+.... -..+
T Consensus 86 G~edG~I~ly~p~~~~----~~~-------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~-~tP~ 153 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASII----ANA-------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP-ETPF 153 (1049)
T ss_pred cccCCceEEecchhhc----cCc-------chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc-CCCC
Confidence 3456788888877740 111 1223334578999999999999888 666666 899999976542 1122
Q ss_pred ---ccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEE
Q 003360 229 ---ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSG 301 (826)
Q Consensus 229 ---~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasg 301 (826)
.......|.+ |. ....+|++|+.+|.+-|||+.... ++..+... .....+..|+|+|+. ..++++
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~------~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDT------PGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccC------CCccceeeeeeCCCCceeeeee
Confidence 1224455666 43 345699999999999999995543 22222211 111468899999985 456666
Q ss_pred eCCC---cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCeEEEEEccCC-CEEEEEecCCeEEEEecC
Q 003360 302 DQSG---MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 302 s~dg---~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~ 376 (826)
+.|. .|.+||+|.-.. . ++. ..|...|.+|.|++.+ .+|+++..|+.|.+|+..
T Consensus 226 s~dd~~PviqlWDlR~ass----------------P-----~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASS----------------P-----LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred cCCCCCceeEeecccccCC----------------c-----hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 5554 699999984322 1 222 2567779999999976 889999999999999999
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+++++..+. ....++..+.|.|. +...+++++-||.|.|+.+.++.
T Consensus 285 tgEvl~~~p---~~~nW~fdv~w~pr-----~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELP---AQGNWCFDVQWCPR-----NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecC---CCCcceeeeeecCC-----CcchhhhheeccceeeeeeecCC
Confidence 999996654 35678889999996 46688899999999999998554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=161.97 Aligned_cols=209 Identities=19% Similarity=0.249 Sum_probs=152.6
Q ss_pred CEEEEEEeeCCCe----EEEec-CCcEEEeccCC------CceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEe
Q 003360 194 SITAMKLITGNSF----ILSSA-DEDYSLLAKSV------PPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWD 259 (826)
Q Consensus 194 ~Vt~~~fs~~~~~----l~~~~-d~~i~~w~~~~------~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD 259 (826)
.-..++|.+.+.. ++.|. ||.|.+|+... ..+......|+|.|.. |.+... +||+|..||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4467788887776 55555 99999995432 1122224679999999 888655 999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+..... + +.... ..-...|.+|+|+.. ...||+++.+|.+.|||++..+.. . .
T Consensus 146 lnn~~t-P-~~~~~------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-----i-----------~-- 199 (1049)
T KOG0307|consen 146 LNKPET-P-FTPGS------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-----I-----------K-- 199 (1049)
T ss_pred cCCcCC-C-CCCCC------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-----c-----------c--
Confidence 944331 1 11110 112368999999875 578999999999999999965321 0 0
Q ss_pred EEEEeeccCCeEEEEEccCC-CEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 339 SVKVMKINGSIISLNMNRNS-QHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g-~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+........+..|+|+|+. ..|+++++| -.|.+||+|....- .+...+|...|.++.|++. |..+|++
T Consensus 200 -ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP--~k~~~~H~~GilslsWc~~-----D~~lllS 271 (1049)
T KOG0307|consen 200 -LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP--LKILEGHQRGILSLSWCPQ-----DPRLLLS 271 (1049)
T ss_pred -cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc--hhhhcccccceeeeccCCC-----Cchhhhc
Confidence 1111223458899999976 456666665 35899999877654 3444689999999999996 6799999
Q ss_pred EECCCcEEEEECCCCceEEeee
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.|+.|.+|+.+||+.+..+.
T Consensus 272 sgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ccCCCCeeEecCCCceEeeecC
Confidence 9999999999999999998863
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-13 Score=133.34 Aligned_cols=316 Identities=15% Similarity=0.114 Sum_probs=199.1
Q ss_pred CcCCeEEEEEee-eCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC--CCceeeEEEecCCCCCCCCCCce
Q 003360 71 DKIPISSLKWVY-ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL--SEPCIDMEIISSSSDPNKPKQDS 147 (826)
Q Consensus 71 ~~~pI~~l~W~~-~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~--~~~~~d~~~l~~~~~~~~~~~~~ 147 (826)
+..||..+++.. ..-....++..-|. +.+++...+.....+.+...... ++.+--..+... ....++.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-----~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-----NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTGNPF 107 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-----cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCCCee
Confidence 456777777654 22222344443333 24566666666655555433322 222222222211 1225678
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCc-
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPP- 224 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~- 224 (826)
+++++..|.|+++|...- +..-.+.+|...|+.++|.|+.+. +++++ |..||+|+.+...
T Consensus 108 la~~G~~GvIrVid~~~~-----------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG-----------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecchh-----------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 888889999999998761 122335789999999999998755 55577 9999999766533
Q ss_pred eeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee--eeecc----------------cccccccccC
Q 003360 225 LLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL--ILSLK----------------QQSEKDFSLS 282 (826)
Q Consensus 225 ~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~--i~~l~----------------~~~~~~~~~h 282 (826)
+..+ ..+|.+.|.+ |+.++.+|++++.|.++++|++..+...- -.... ...-..-..|
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 2222 5679999999 99999999999999999999985332100 00000 0000023567
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--ccCCCE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--NRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~ 360 (826)
...|-|+.|-- .++++=+-++.|..|....-. +.++.+..+ +....++ ..+.-....|.-|.| .+-++.
T Consensus 251 rnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~----e~~~~vkp~-es~~Ti~--~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWFG--DFILSKSCENAIVCWKPGKLE----ESIHNVKPP-ESATTIL--GEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHHh--hheeecccCceEEEEecchhh----hhhhccCCC-ccceeee--eEeccCccceEEEEEeecHHHHH
Confidence 78888888864 688888888999999984211 112211111 1111111 111112334555544 566889
Q ss_pred EEEEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
||.|.+.|.|.+||++..... .+....+.....|...+|+. |+.+|+....|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~------dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR------DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc------cCcEEEEEeCCCcEEEEEee
Confidence 999999999999999876542 11222234566788899998 69999999999999999854
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=138.50 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=159.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE--ecCCcEEEeccCCC--
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS--SADEDYSLLAKSVP-- 223 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~--~~d~~i~~w~~~~~-- 223 (826)
+.+.+....+.+||...++.. +...+ ....+.+..++|.......+. ++|..+++|.+..+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~------------~~~~~---~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~ 69 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK------------SEYVH---QTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP 69 (673)
T ss_pred eeeeccCCceEEeecccccCc------------ccccc---CCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence 345556667888987774210 01111 122344778888776653333 22889999965543
Q ss_pred ceeecccccCC-ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 224 PLLDFETKLKD-GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 224 ~~~~~~~~h~g-~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.+... ....| .-.| ......++++|+..|+|+|||+..+.. ... ...|...|++|.+.....++|+
T Consensus 70 ~Vp~~-~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~--hr~--------lkdh~stvt~v~YN~~DeyiAs 138 (673)
T KOG4378|consen 70 EVPRV-RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI--HRF--------LKDHQSTVTYVDYNNTDEYIAS 138 (673)
T ss_pred cccee-eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--hhh--------ccCCcceeEEEEecCCcceeEE
Confidence 11111 11111 1223 333447999999999999999964431 111 2468899999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCE-EEEEecCCeEEEEecCCC
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQH-LAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~-lasGs~dG~V~vwD~~~~ 378 (826)
++..|.|.|..+.++.... .+... ...|.-|.|++..++ |.+++++|.|.+||+.+.
T Consensus 139 vs~gGdiiih~~~t~~~tt---------------------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTT---------------------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred eccCCcEEEEecccCcccc---------------------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 9999999999998664421 01111 233678999997765 567899999999999988
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+ +.+...|..|-..|+|+|. +..+|++.+.|..|.+||....+....
T Consensus 198 sp~--~~~~~~HsAP~~gicfsps-----ne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 198 SPI--FHASEAHSAPCRGICFSPS-----NEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred Ccc--cchhhhccCCcCcceecCC-----ccceEEEecccceEEEeecccccccce
Confidence 888 4555789999999999996 567888999999999999985554433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=142.95 Aligned_cols=270 Identities=11% Similarity=0.116 Sum_probs=171.5
Q ss_pred cCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc
Q 003360 111 EQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF 190 (826)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (826)
+..+.++++..+.....+.|+.++| .+..++..+.+..+.+||..+-. .- + ....-+
T Consensus 86 fr~ee~~lk~~~aH~nAifDl~wap--------ge~~lVsasGDsT~r~Wdvk~s~-----l~-G---------~~~~~G 142 (720)
T KOG0321|consen 86 FRLEERQLKKPLAHKNAIFDLKWAP--------GESLLVSASGDSTIRPWDVKTSR-----LV-G---------GRLNLG 142 (720)
T ss_pred cchhhhhhcccccccceeEeeccCC--------CceeEEEccCCceeeeeeeccce-----ee-c---------ceeecc
Confidence 3334444444444445566666554 23455666667788999987610 00 0 012468
Q ss_pred cCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCc---------------------eeec-----cc-ccCCc----ce
Q 003360 191 LDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPP---------------------LLDF-----ET-KLKDG----SQ 237 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~---------------------~~~~-----~~-~h~g~----V~ 237 (826)
|...|..++|.+..+.++. |+ |+.+.+|+..... .... .| .+.+. |+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 9999999999998876655 66 9999999532211 0000 00 12222 33
Q ss_pred e-eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEEe
Q 003360 238 S-HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLS---GIPLTALYYDGTSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 238 ~-~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h---~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~ 312 (826)
. +..|...||+++. |+.|||||+..... .+.........+..| ...++++.....|.+|.+.+.|+.|.+|++
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~--~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYT--AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeeccccc--ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 3 6788899999988 99999999944331 111221112222233 256788888887777777777999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC-eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS-IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~-V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
....... .+ ...+..... -..-..+|++.++++|+.|+.+++|.+.....- .....+|.
T Consensus 301 ~s~s~sP-----------~~-------~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght 360 (720)
T KOG0321|consen 301 RSLSISP-----------VA-------EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP--PALLLGHT 360 (720)
T ss_pred cccCcCc-----------hh-------hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC--hhhhhCcc
Confidence 8543210 00 000001111 122246899999999999999999999887654 33345888
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.|++++|.|. +-.-+++++.|.++++|++.+|-
T Consensus 361 ~eVt~V~w~pS-----~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 361 REVTTVRWLPS-----ATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEEEEEeeccc-----cCCCceeeccCcceEEEeccCch
Confidence 99999999996 33447788999999999997653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=132.97 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=148.9
Q ss_pred cCCCEEEEEEeeC----CCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCC
Q 003360 191 LDSSITAMKLITG----NSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 191 h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~ 262 (826)
|+.....++++-+ .+++++++ -|.|++.+...........+|.+.|.. ++|+. +++++|+.|.+||+|++..
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5555555556443 56777777 899999976655555555789999988 88865 6999999999999999965
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE-----
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII----- 337 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~----- 337 (826)
... +..+. .+++|.+.|.++.|++++..+++++.|..+++|++...+..+.. -..+.+++++....+
T Consensus 168 ~~C--v~VfG-----G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l-E~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 168 DVC--VAVFG-----GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL-ELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred CeE--EEEec-----ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh-hhhcccCCCCccCcCCcccc
Confidence 552 23333 34789999999999999999999999999999999854221100 011223332221000
Q ss_pred --EEE-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-Ce-------------eEEeeecccCCCCCeeEEEEe
Q 003360 338 --HSV-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PT-------------VLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 338 --~~~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~-------------~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ....|...|.|+.|- |.++++=+.++.|..|-..+ .. ++..+. -....|+-+.|.
T Consensus 240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~---~~~c~iWfirf~ 314 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD---YPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec---cCccceEEEEEe
Confidence 001 223356678888886 46899988899999998721 11 111111 112234445443
Q ss_pred --ecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 401 --TCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 401 --~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+. ...|+.|...|.|++||+++...
T Consensus 315 ~d~~------~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 315 FDPW------QKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ecHH------HHHHhhccCCCcEEEEECCCCCC
Confidence 33 77899999999999999997654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=135.74 Aligned_cols=209 Identities=13% Similarity=0.196 Sum_probs=145.9
Q ss_pred cccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeC
Q 003360 228 FETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQ 303 (826)
Q Consensus 228 ~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~ 303 (826)
+..+|++.|.. |+|. .+.||+|+.|.+|.||++-.+.+ ...+. +.+..+.+|...|-.|+|+|.- ..|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l--~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL--TRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccc--ccCcc-cceEEEeecceeEEEEeecccchhhHhhccC
Confidence 34789999988 8874 56899999999999999932221 11121 2244567899999999999975 68999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|.+|.+|++.++.. +....|..-|.+++|+.+|.++++.+.|..|||||.+.++++..
T Consensus 153 Dn~v~iWnv~tgea----------------------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA----------------------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred CceEEEEeccCCce----------------------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999996644 33445888899999999999999999999999999999999965
Q ss_pred eecccCCC-CCeeEEEEeecccCCCCCcEEEEEE---CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 384 KHIASDIS-SGIVSLQFETCSLQGFEKNFLVIAT---KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 384 ~~~~~~~~-~~V~sl~f~~~~~~~~d~~~l~sgs---~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
.. .|. ..-....|.- ++.++-+|- ++..+-+||..+-+ ..+.++.+|..+|.
T Consensus 211 ~~---~heG~k~~Raifl~------~g~i~tTGfsr~seRq~aLwdp~nl~-------------eP~~~~elDtSnGv-- 266 (472)
T KOG0303|consen 211 GV---AHEGAKPARAIFLA------SGKIFTTGFSRMSERQIALWDPNNLE-------------EPIALQELDTSNGV-- 266 (472)
T ss_pred cc---cccCCCcceeEEec------cCceeeeccccccccceeccCccccc-------------CcceeEEeccCCce--
Confidence 53 232 2233444554 366444442 46688999977421 11334444432222
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEe--ecCcEEEEecc
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLC--SEKAACAYSLS 499 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--se~~irv~sl~ 499 (826)
-...+.++..+|.+| +|..||.|-+.
T Consensus 267 --------------l~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 267 --------------LLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred --------------EEeeecCCCCEEEEEecCCcceEEEEec
Confidence 112334454555555 56689999886
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=147.61 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=166.9
Q ss_pred CCccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 2 ~~~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
-|.+..++|+|...+..+|-.++++++|++|+.||+|++||.+.-.... -..+-.+.+.....++.++.-|
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------ceeeeeEEEeccCCceEEEEec
Confidence 3778899999999999999988889999999999999999988741111 1112222333334456666555
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcc-----eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCcc
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTES-----RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGH 156 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~-----~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~ 156 (826)
. .+.-|..++. +..+.++.++..... ...+..+...+.+++|..-. .......++.++..+.
T Consensus 1108 ~----~~~~~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~-----~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1108 G----NGDQFAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT-----AIVQSHVLVYATDLSR 1174 (1431)
T ss_pred c----CCCeEEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeeccc-----ccccceeEEEEEeccc
Confidence 4 2333444433 234566666552211 11133445566667664221 1122246778888888
Q ss_pred EEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcc
Q 003360 157 FYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGS 236 (826)
Q Consensus 157 l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V 236 (826)
++.||......... ...+..++.||.++
T Consensus 1175 iv~~D~r~~~~~w~---------------lk~~~~hG~vTSi~------------------------------------- 1202 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWR---------------LKNQLRHGLVTSIV------------------------------------- 1202 (1431)
T ss_pred eEEecchhhhhHHh---------------hhcCccccceeEEE-------------------------------------
Confidence 88998877432110 00011122333332
Q ss_pred eeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC---EEEEE-e-CCCcEEEEE
Q 003360 237 QSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR---VLVSG-D-QSGMVRIFK 311 (826)
Q Consensus 237 ~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~---~Lasg-s-~dg~V~iwd 311 (826)
.+|.++++++|+..|.+-+||+..+.. +.... ..+..+|+.|..||-.+ ..+++ + ..+.|.+|+
T Consensus 1203 --idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1203 --IDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred --ecCCceEEEEecCCceEEEEEeecCce--eeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 556667899999999999999977763 33333 23557888888887543 44444 4 467999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEe----eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM----KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~----~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+.++.+.. +-+..++...--+.+... ++.-.....++..-+.++.+|+.|+.||.||...+..
T Consensus 1272 ~~~g~~~~------vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1272 METGLRQT------VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cccCcceE------EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 99874410 111111111000000000 1111223334444455899999999999999876543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=140.42 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=193.4
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
++-|.-+|+. |||++|+.+ .+..+.++|.++|....+ -+.|+.-|.+++|+. +|..|.
T Consensus 12 ~hci~d~afk-PDGsqL~lA-Ag~rlliyD~ndG~llqt----------------LKgHKDtVycVAys~----dGkrFA 69 (1081)
T KOG1538|consen 12 EHCINDIAFK-PDGTQLILA-AGSRLLVYDTSDGTLLQP----------------LKGHKDTVYCVAYAK----DGKRFA 69 (1081)
T ss_pred ccchheeEEC-CCCceEEEe-cCCEEEEEeCCCcccccc----------------cccccceEEEEEEcc----CCceec
Confidence 4588899995 899999988 677899999999833332 234667788998876 788888
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+|+.|. .+++|+..-
T Consensus 70 SG~aDK---------------------------------------------------------~VI~W~~kl-------- 84 (1081)
T KOG1538|consen 70 SGSADK---------------------------------------------------------SVIIWTSKL-------- 84 (1081)
T ss_pred cCCCce---------------------------------------------------------eEEEecccc--------
Confidence 888754 111222111
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH 250 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs 250 (826)
.... --.|...|.|+.|+|....+++++-..+-+|......... ......+.+ |..||++++-|+
T Consensus 85 --------EG~L---kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 85 --------EGIL---KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred --------ccee---eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEec
Confidence 0000 1258889999999999999999885566788544322211 111222333 999999999999
Q ss_pred CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 251 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-----~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
.||||.|-+..+..... +.. --+...+|++++|+|.+ ..+++..+..++.+|.+.....
T Consensus 152 ~nGTIsiRNk~gEek~~---I~R-----pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-------- 215 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVK---IER-----PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-------- 215 (1081)
T ss_pred cCceEEeecCCCCcceE---EeC-----CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee--------
Confidence 99999999886555211 111 12345899999999975 4688888888888888763211
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
-+.....-...|+.+.++|.++.+|+.|+.+.++-. .|-.+- .......+|++++..|
T Consensus 216 --------------gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLG---Tvg~~D~WIWtV~~~P---- 273 (1081)
T KOG1538|consen 216 --------------GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLG---TVGEQDSWIWTVQAKP---- 273 (1081)
T ss_pred --------------cccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEe---eccccceeEEEEEEcc----
Confidence 111122334678999999999999999999999865 343331 2234677999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++++++.|..||+|-.|++-
T Consensus 274 --NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 --NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred --CCceEEEEEccCeeehhhhH
Confidence 59999999999999998875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-12 Score=126.07 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=144.5
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.-+|+.|++.|.+++.|. +|.+.+|+..+..+..+..+|...|.+ |+++|+.|+|++.|.+|.+||+..+. +++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~r 102 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKR 102 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeE
Confidence 378999999999999999 999999986654455555789999999 99999999999999999999994444 2344
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEE-EeecCCCCeEEEEEEEEeeccCC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLS-FTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~-i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
++ -..+|+...|+|..+-.+++ -.+..-.+-++... .+. +..+.++. .+..
T Consensus 103 ir---------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-------~h~~Lp~d~d~d-----------ln~s 155 (405)
T KOG1273|consen 103 IR---------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-------KHSVLPKDDDGD-----------LNSS 155 (405)
T ss_pred EE---------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-------ceeeccCCCccc-----------cccc
Confidence 44 23699999999976544333 22333334444311 010 11111111 1222
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+..|.+.|+++.+|...|.+.|+|..+.+|+...++.. ...|.++.|+.. +.+|+.-+.|..|+.|+..
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~------g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRK------GRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEecc------CcEEEEecCCceEEEEehh
Confidence 3444788999999999999999999999999996665422 357888889874 9999999999999999876
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-12 Score=145.82 Aligned_cols=283 Identities=14% Similarity=0.193 Sum_probs=178.5
Q ss_pred eEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccC--CCCCCCC
Q 003360 104 LQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS--RSPPSAP 181 (826)
Q Consensus 104 ~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~--~~~~~~~ 181 (826)
+.|+.++.......+...-+....+.++++| +..+...+++++.+|.+.+|++..... ..+. ..+..+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li------Ne~D~aLlLtas~dGvIRIwk~y~~~~---~~~eLVTaw~~Ls 1158 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELI------NEQDDALLLTASSDGVIRIWKDYADKW---KKPELVTAWSSLS 1158 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeee------cccchhheeeeccCceEEEeccccccc---CCceeEEeecccc
Confidence 4444444433322222233455567788877 455667788999999999998765210 0000 0000000
Q ss_pred ccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-eecccccCCccee---eCCCCCEEEEEECCCcEE
Q 003360 182 KEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS---HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 182 ~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVr 256 (826)
. .+++-.+.=..+.|.....+|++++ -..|++|+...... ..+..+-...|++ ....|++|++|..||+||
T Consensus 1159 ~----~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1159 D----QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred c----cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence 0 1122222224566777777777777 67899998764332 2233333445555 445589999999999999
Q ss_pred EEeCCCCc-eeeeeecccccccccccCCCC--eEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCC
Q 003360 257 FWDVSCPL-FLLILSLKQQSEKDFSLSGIP--LTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG 332 (826)
Q Consensus 257 iWD~s~~~-~~~i~~l~~~~~~~~~~h~~~--V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~ 332 (826)
+||..... ..++... ..|... |..+.+.+.| ..|++|+.+|.|.+||++...... +.
T Consensus 1235 vyD~R~a~~ds~v~~~--------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~-------- 1295 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVY--------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FL-------- 1295 (1387)
T ss_pred EeecccCCccccceee--------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cc--------
Confidence 99983322 1122222 245544 9999999976 469999999999999999652211 00
Q ss_pred CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE---EeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 333 NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---YQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 333 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
. + .......+..++|..++....+|+|+. +.|+|||+.+..+- +.-.........+.+++|+|+ .
T Consensus 1296 -~-i---v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~------~ 1363 (1387)
T KOG1517|consen 1296 -T-I---VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH------R 1363 (1387)
T ss_pred -e-e---eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch------h
Confidence 0 0 111111235899999999999999999 89999999654432 111112234567899999996 7
Q ss_pred cEEEEEECCCcEEEEECCCCc
Q 003360 410 NFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.+++|..|.+|.||....++
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 788999999999999877543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-12 Score=132.24 Aligned_cols=199 Identities=16% Similarity=0.129 Sum_probs=144.0
Q ss_pred EEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc
Q 003360 196 TAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
.+++|+.+|..+++++ |+++|+|+...-...-.+..|.+.|.+ |+||+++|++-+.| ..+||+...... +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--LARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--hhhcC
Confidence 6899999999999998 999999983222222224779999999 99999999999999 999999933321 11111
Q ss_pred cccccccccCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~-----~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
. .........+.|+-+. +++++-..-+.|+.||+..... + .... ..+...-..
T Consensus 225 ~------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-------------~-~~l~--~~~~~~~~~ 282 (398)
T KOG0771|consen 225 P------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-------------S-NFLR--LRKKIKRFK 282 (398)
T ss_pred C------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-------------c-cccc--hhhhhhccC
Confidence 0 0122345567777776 4455555667888888763211 1 0000 011112244
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.|++|+.+++|+++|.|+.||.|.|++....++++... ..|...|+.+.|+| |.+++.+.+.|....+..+.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~P------dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSP------DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcC------CcCcccccccCCceeEEEEe
Confidence 69999999999999999999999999999988885444 57888999999999 68999998888887776655
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-12 Score=129.39 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=129.8
Q ss_pred Cccee--eCCCCC-EEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003360 234 DGSQS--HSKVKN-LFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 234 g~V~~--~s~~~~-~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~i 309 (826)
..|.+ |+++.. .++||+.|..||||-+ ....-.-.-++++ ...+..|..+|+++.|+|++.+||+|+.+|.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y--~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY--LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE--eecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34444 666655 9999999999999988 2111000001222 1234578899999999999999999999999999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~ 389 (826)
|............ .....+..-... .....|...|..++|+|++.++++|+.|.++++||+..+.++.. ..+
T Consensus 92 Wk~~~~~~~~~d~--e~~~~ke~w~v~---k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~---~~d 163 (434)
T KOG1009|consen 92 WKQGDVRIFDADT--EADLNKEKWVVK---KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI---LDD 163 (434)
T ss_pred EEecCcCCccccc--hhhhCccceEEE---EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee---ccc
Confidence 9987311100000 000001111111 34455778899999999999999999999999999999998843 358
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
|...|..++|.|. ++++++-+.|...+.+.+..-+.+
T Consensus 164 h~~yvqgvawDpl------~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 164 HEHYVQGVAWDPL------NQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred cccccceeecchh------hhhhhhhccCcccceeeeeeeeee
Confidence 8899999999996 899999999997777777644433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-10 Score=129.07 Aligned_cols=313 Identities=15% Similarity=0.143 Sum_probs=187.0
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
.|+-.+.+ +||.++++|+|..||.|.+|.--+.. ........+..|...|++++|+++|.+|++|+..|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 36655666 99999999999999999999873311 00011223467889999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec--
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI-- 386 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~-- 386 (826)
+|.+.++.. --+....++|..+.+|||+...+...+|..|.+....+.....+..-
T Consensus 277 ~Wq~~T~~k----------------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 277 LWQLETGKK----------------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred EEeecCCCc----------------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 999986542 11223478899999999999999999999999998765443321110
Q ss_pred ------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC--CCc-ceEEEEecCCCCc
Q 003360 387 ------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK--PSR-ALFMQILNGQDGL 457 (826)
Q Consensus 387 ------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~--~~~-~lsi~~l~~~~~~ 457 (826)
..+..+-.+.++++|. .+.++-.+..|+|.+||+.+-+.+..+.+.... ++. -+.+.....
T Consensus 335 ~~~~~~k~~~~~l~t~~~idpr------~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav---- 404 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDPR------TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV---- 404 (792)
T ss_pred CCCccccccccccceeEEEcCC------CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee----
Confidence 1112344566777773 667888899999999999988777554321111 111 111100000
Q ss_pred ccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEE
Q 003360 458 ARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLL 536 (826)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~ 536 (826)
.......-|+.. + ...+.+.....+..+|+|......+.- .-..++.....-|.-++.+.. ......+..
T Consensus 405 ~~~~~gs~maT~-E-------~~~d~~~~~~~e~~LKFW~~n~~~kt~-~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 405 ARSRFGSWMATL-E-------ARIDKFNFFDGEVSLKFWQYNPNSKTF-ILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred hhhccceEEEEe-e-------eeehhhhccCceEEEEEEEEcCCccee-EEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 000000000000 0 000111112234567888765321111 111233322233444444444 444466777
Q ss_pred EeeceEEEeccCCcccccccccc----ce-eecCCCCCCCcccceeccCCCcEEEEcCCeeeee
Q 003360 537 FTSGKFEIRSLPELSLLKETSIR----GF-VYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFF 595 (826)
Q Consensus 537 ~~~G~I~i~slP~L~~l~~~sl~----~~-~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~ 595 (826)
..+|.++||.+-+-+.+..-+-+ .+ .|. ..-....||+.||.++.+.-+.-|++
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-----k~~i~a~~fs~dGslla~s~~~~Iti 534 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-----KTPITALCFSQDGSLLAVSFDDTITI 534 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccc-----cCcccchhhcCCCcEEEEecCCEEEE
Confidence 78999999999776666543211 11 233 22234558888888777766666555
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=124.23 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=116.9
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeeccc--ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQ--QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
-++++|.++|.|-+||.+.... +..++. ..+.....|..+|.++.|.+....=++|+.+..+..|.+......
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--- 240 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--- 240 (323)
T ss_pred EEEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc---
Confidence 3789999999999999955431 122221 112234567799999999988777788999999999998743110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
-++ -.+... +-.|..+.+-||++.+|++++||.||||..++...+... .-|...|.+++|+
T Consensus 241 -----------lq~----~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL---kyHsagvn~vAfs 302 (323)
T KOG0322|consen 241 -----------LQI----RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL---KYHSAGVNAVAFS 302 (323)
T ss_pred -----------ccc----cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh---hhhhcceeEEEeC
Confidence 010 111111 334888999999999999999999999999999887433 4678899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
| +.+.+++++.|++|.+|++
T Consensus 303 p------d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 P------DCELMAAASKDARISLWKL 322 (323)
T ss_pred C------CCchhhhccCCceEEeeec
Confidence 9 5799999999999999986
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=139.48 Aligned_cols=263 Identities=15% Similarity=0.152 Sum_probs=162.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
..+|+|++++.-++.++|.|+.+|.|++||++.+... |...+......++.|+..+.|....
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~----------~~s~ls~~~~sh~~~v~~vvW~~~~-------- 303 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT----------PPSGLSALEVSHSEPVTAVVWLQNE-------- 303 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC----------CCcccccccccCCcCeEEEEEeccC--------
Confidence 6799999998778999999999999999999886110 1112222344556677777664300
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
++ .-++.++.+|.|..|+...+..-....
T Consensus 304 --------------------------------------------------~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~ 332 (555)
T KOG1587|consen 304 --------------------------------------------------HN-TEFFSLSSDGSICSWDTDMLSLPVEGL 332 (555)
T ss_pred --------------------------------------------------CC-CceEEEecCCcEeeeeccccccchhhc
Confidence 11 224556667788777655432100000
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEE-eccCC-Cce------eecccccCCccee--eC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSL-LAKSV-PPL------LDFETKLKDGSQS--HS 240 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~-w~~~~-~~~------~~~~~~h~g~V~~--~s 240 (826)
+...... -.. -..-...+++++|.+..+.. +.|. .|.|.. -+.+. +.. ......|.|.|.+ ++
T Consensus 333 ~~~~~~~----~~~-~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n 407 (555)
T KOG1587|consen 333 LLESKKH----KGQ-QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN 407 (555)
T ss_pred ccccccc----ccc-ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence 0000000 000 01222468999998866554 4455 666544 33222 111 1112457888888 88
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
|.+..++..+.|.+||||.-.... .+++.+. .+...|++++|||.- ..|+++..||.+-+||+.......
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~-~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIA-SPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred CCccceeeeeccceeEeccccCCC-Ccchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 877655544449999999974211 1222222 344569999999965 688999999999999998554321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
. ..........+.+.|++.|+.|++|...|++.+|++..
T Consensus 479 --------------v-----~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 --------------V-----LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --------------c-----ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1 11111134467788899999999999999999999853
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-11 Score=119.18 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=118.3
Q ss_pred cCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcE
Q 003360 232 LKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMV 307 (826)
Q Consensus 232 h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V 307 (826)
+...+++ |. -+.++|.|.+-|-|..|||+..... ..++ .++..|+..|..|+|...+ +.||+.+.||.|
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---~~vk----TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---GTVK----TQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccc---ccee----eEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 3445555 33 3668999999999999999943310 1122 2245799999999999865 689999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccC-CCEEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRN-SQHLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~-g~~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
|+||++.-... .. +-.... ..+...|+|++. -+++|+-. ....|.|.|+|.+... .
T Consensus 222 RmFDLR~leHS---------------TI----IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp--v 280 (364)
T KOG0290|consen 222 RMFDLRSLEHS---------------TI----IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP--V 280 (364)
T ss_pred EEEEecccccc---------------eE----EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc--e
Confidence 99999943221 10 111111 456788899874 45566543 3456899999988654 2
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
....+|.+.|..++|.|. ....|.+++.|..+.+||+..
T Consensus 281 a~L~~H~a~VNgIaWaPh-----S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPH-----SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ehhhcCcccccceEecCC-----CCceeeecCCcceEEEEeccc
Confidence 334689999999999996 578999999999999999973
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-09 Score=114.71 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=153.1
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEe
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWD 259 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD 259 (826)
...+..|...|..++|++++..++.++ |+.+++|+...........+|...|.+ ++|++. ++++++.|++|++||
T Consensus 148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd 227 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227 (466)
T ss_pred EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence 344678999999999999999888765 899999977653333333568889988 889988 555569999999998
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
...... +.. .+..|...+ ...|+|++..+++++.|+.+++|+.+.... ..
T Consensus 228 ~~~~~~--~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~---- 277 (466)
T COG2319 228 LSTGKL--LRS-------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------LL---- 277 (466)
T ss_pred CCCCcE--Eee-------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------EE----
Confidence 853321 110 123455454 338999998999999999999999984322 00
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKD 418 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~D 418 (826)
.....|...|.++.|+|++..+++++.|+.+.+||........... ...|...+..+.| .. ++..++.+ ..|
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~~~d 350 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SP-----DGSLLVSGGSDD 350 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CC-----CCCEEEEeecCC
Confidence 1113456789999999988888889999999999998887664443 2345557888888 53 23455555 688
Q ss_pred CcEEEEECCCCc
Q 003360 419 SSVLVLDSDNGN 430 (826)
Q Consensus 419 g~V~iwd~~tg~ 430 (826)
+.+.+|+.....
T Consensus 351 ~~~~~~~~~~~~ 362 (466)
T COG2319 351 GTIRLWDLRTGK 362 (466)
T ss_pred CcEEeeecCCCc
Confidence 999999998776
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=126.49 Aligned_cols=225 Identities=12% Similarity=0.173 Sum_probs=153.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--------C-----C--ceeec-ccccCCccee--eCCCCCEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--------V-----P--PLLDF-ETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--------~-----~--~~~~~-~~~h~g~V~~--~s~~~~~l~ 247 (826)
.|..|+..|+++.|+|+|..+++|+ ++.+.+|... . + +.... ..+|...+.. |++++++++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 3578999999999999999999999 7889999554 1 1 11111 2357777777 999999999
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc---------
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--------- 318 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~--------- 318 (826)
+|+.|.++++||+....+ ......|..-|..++|.|.++++++=+.|...+.+.+......
T Consensus 140 s~s~dns~~l~Dv~~G~l----------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQL----------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred eeeccceEEEEEecccee----------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 999999999999955553 1122467789999999999999999888887777665433110
Q ss_pred ---------------cccc----eEEEeecCCCCeEEE-------EE-------------------EEEeeccCCeEEEE
Q 003360 319 ---------------IENS----FLSFTGSKKGNSHII-------HS-------------------VKVMKINGSIISLN 353 (826)
Q Consensus 319 ---------------~~~~----~~~i~~s~~~~~~~~-------~~-------------------~~~~~~~~~V~~l~ 353 (826)
+... +..++++++|..+.. .+ ........++..+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0000 111233444422110 00 00111123355555
Q ss_pred EccC------------------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 354 MNRN------------------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 354 ~s~~------------------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
|+|. +..+|+++.+ .|.|||..+...++... .-|-.+|+.++|+. |+..|+..
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~--nihy~~iTDiaws~------dg~~l~vS 360 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVD--NIHYSAITDIAWSD------DGSVLLVS 360 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEe--eeeeeeecceeecC------CCcEEEEe
Confidence 5542 3356777777 68999999987774433 45778999999998 69999999
Q ss_pred ECCCcEEEEECCCCc
Q 003360 416 TKDSSVLVLDSDNGN 430 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~ 430 (826)
+.||...+...+..+
T Consensus 361 S~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 361 STDGFCSLVTFEPWE 375 (434)
T ss_pred ccCCceEEEEEcchh
Confidence 999988777766443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-11 Score=114.13 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=160.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC----
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS---- 221 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~---- 221 (826)
.+++++.+.|+|.++.+.++. .++. -++.+...+....|+.+|..++|. .++|++++||.|+-|.-.
T Consensus 23 ~~l~agn~~G~iav~sl~sl~-----s~sa--~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLD-----SGSA--EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEE 93 (325)
T ss_pred eEEEEecCCCeEEEEEehhhh-----cccc--CCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhh
Confidence 457888899999998887742 1111 112334444558999999999998 678888889999988321
Q ss_pred ---CCceeecccc-cCCc-----cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEE
Q 003360 222 ---VPPLLDFETK-LKDG-----SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 222 ---~~~~~~~~~~-h~g~-----V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
...+.....+ |.+. |.+ ..|..+-+++++.|+.+.-||+..+..+ ..+.+|.+-|.++.
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~----------r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ----------REYRGHTDYVHSVV 163 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE----------EEEcCCcceeeeee
Confidence 1222222122 3332 233 5677777777779999999999555421 12458999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccCCCEEEEEecCCe
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~lasGs~dG~ 369 (826)
--.....+.+|++||+|||||.++.++.. .+ .+.+.. -...++.+ .|-+++.+.+ ++++|..- .
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~-----~i-e~yk~~------~~lRp~~g~wigala~~ed--WlvCGgGp-~ 228 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDTKTQKHVS-----MI-EPYKNP------NLLRPDWGKWIGALAVNED--WLVCGGGP-K 228 (325)
T ss_pred ecccCcceeecCCCccEEEEeccccceeE-----Ee-ccccCh------hhcCcccCceeEEEeccCc--eEEecCCC-c
Confidence 86667789999999999999999765421 00 000110 11122233 3888888766 67776644 6
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+.+|.++..++...+.+ ..+|..+.|. ..++++++....|.-|.+. |..-
T Consensus 229 lslwhLrsse~t~vfpi----pa~v~~v~F~--------~d~vl~~G~g~~v~~~~l~-Gvl~ 278 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI----PARVHLVDFV--------DDCVLIGGEGNHVQSYTLN-GVLQ 278 (325)
T ss_pred eeEEeccCCCceEEEec----ccceeEeeee--------cceEEEeccccceeeeeec-cEEE
Confidence 79999999887765653 3467777775 4677788878888888876 5443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-11 Score=119.86 Aligned_cols=252 Identities=14% Similarity=0.136 Sum_probs=159.2
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCC-CCCCCCccceeeecccC-CCEEEEEEe-------eCCCeEEEec-C
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR-SPPSAPKEVMLKMPFLD-SSITAMKLI-------TGNSFILSSA-D 212 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~h~-~~Vt~~~fs-------~~~~~l~~~~-d 212 (826)
++...+++.+...-|.+|+.-.- - +..+ ..+.+. .....+...+ ..|...++. |+..+.++.+ +
T Consensus 59 PDGSciL~~sedn~l~~~nlP~d-l----ys~~~~~~~~~-~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 59 PDGSCILSLSEDNCLNCWNLPFD-L----YSKKADGPLNF-SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred CCCceEEeecccCeeeEEecChh-h----cccCCCCcccc-ccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 45577788888899999876441 0 1111 111111 1111222222 234444443 4455666666 8
Q ss_pred CcEEEeccCCCceeec--ccccCCccee-----eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCC
Q 003360 213 EDYSLLAKSVPPLLDF--ETKLKDGSQS-----HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~--~~~h~g~V~~-----~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~ 284 (826)
.-|.+|+.-...+... ...|...+.+ |+|||..|++|.. .+||++|++.+ ..-.++..... .. .+..+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~--~k-~gq~g 208 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK--GK-FGQKG 208 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc--cc-ccccc
Confidence 8999997655444332 1235555544 9999999998765 69999999322 21011111100 00 11236
Q ss_pred CeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
-|.|++|+|.. ..+++|+...++-||..... .++ ...+.|.+.||.|+|.++|.+|.+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----------------~pl----~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----------------RPL----QLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCC-----------------Cce----eeecccCCCeeeEEeccCcCeecc
Confidence 78999999965 59999999999999987632 222 345577889999999999999999
Q ss_pred Eec-CCeEEEEecCCCe-eEEeeecccCCCC-CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 364 GSD-QGYVYLLDTEGPT-VLYQKHIASDISS-GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 364 Gs~-dG~V~vwD~~~~~-~l~~~~~~~~~~~-~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
|.. |-.|-.||+|... .++... +|.. .-..|.|..- .++++|++|+.||.|++||+.+ |+.+
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~---rhv~~TNQRI~FDld----~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALE---RHVGDTNQRILFDLD----PKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhh---hhccCccceEEEecC----CCCceeeccCCCccEEEEecCCCCCcc
Confidence 984 6689999998754 332222 3322 3445666541 1489999999999999999987 5534
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-11 Score=137.56 Aligned_cols=210 Identities=16% Similarity=0.162 Sum_probs=135.9
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-ecc--cccCCccee----eCCCCCEEEEEECCCcEEEEeCCC---
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-DFE--TKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSC--- 262 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~~--~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~--- 262 (826)
+-..+.|+|-.+.++++. ...|++|+....... .|. .....+|+. .-.|..+++||+.||.||||+-..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788999999999988 678999975543333 231 123344555 345667999999999999998721
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
+...++.-...- .....+..+.=.-++|...+.+|++++.-..|+|||..+..... . +..
T Consensus 1146 ~~~eLVTaw~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~-----d--------------iP~ 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSL-SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA-----D--------------IPY 1205 (1387)
T ss_pred CCceeEEeeccc-cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe-----e--------------ccc
Confidence 221121111100 00011112222566788888888888889999999998543311 0 111
Q ss_pred eeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC--eeEEEEeecccCCCCCcEEEEEECCC
Q 003360 343 MKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG--IVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~--V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
....-||+|.-+. .|..+|.|..||.|++||.+....-........|+.. |..+.+.+. + -..|++|+.||
T Consensus 1206 -~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~---G--~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1206 -GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ---G--LGELVSGSQDG 1279 (1387)
T ss_pred -CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC---C--CcceeeeccCC
Confidence 1133477776654 4689999999999999999876432112333456666 888888873 1 12699999999
Q ss_pred cEEEEECCCC
Q 003360 420 SVLVLDSDNG 429 (826)
Q Consensus 420 ~V~iwd~~tg 429 (826)
.|++||++..
T Consensus 1280 ~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1280 DIQLLDLRMS 1289 (1387)
T ss_pred eEEEEecccC
Confidence 9999999964
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=127.93 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEecc
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~ 220 (826)
.+.+++++++.|.+.+||..+.. ++ ..+..+.+.+..++|.. .+..+.+++ ||+|++|+.
T Consensus 39 ~e~~vav~lSngsv~lyd~~tg~-~l----------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGTGQ-LL----------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred cceeEEEEecCCeEEEEeccchh-hh----------------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 44778999999999999988721 11 12356666777888877 455566677 999999976
Q ss_pred CCCc-eeeccc-ccCCcc-eeeC--CCCCEEEEEE----CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 221 SVPP-LLDFET-KLKDGS-QSHS--KVKNLFITGH----SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 221 ~~~~-~~~~~~-~h~g~V-~~~s--~~~~~l~Tgs----~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
+... ...+.| .+.+.. .++. ..++++++|. .|-.|.+||+..... ++..+. +.|...||+|.|
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~-------eSH~DDVT~lrF 173 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLN-------ESHNDDVTQLRF 173 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-hhhhhh-------hhccCcceeEEe
Confidence 5422 222222 333322 3343 3677888885 478899999933221 122222 578899999999
Q ss_pred eCCC-CEEEEEeCCCcEEEEEeCCC
Q 003360 292 DGTS-RVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 292 sp~~-~~Lasgs~dg~V~iwd~~~~ 315 (826)
+|.. .+|++||.||.|.|||++..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCC
Confidence 9964 79999999999999999865
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=128.40 Aligned_cols=352 Identities=15% Similarity=0.199 Sum_probs=207.3
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee------eCC
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY------ADG 85 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~------~~~ 85 (826)
|...++|... +|++..+|+|+.||.|.+|.--. ........+.++|.. ...
T Consensus 204 Htf~~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~----------------------~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 204 HTFNITCVAL-SPNERYLAAGDSDGRILVWRDFG----------------------SSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred hcccceeEEe-ccccceEEEeccCCcEEEEeccc----------------------cccccccceEEEecccccceeEEe
Confidence 3455888887 68999999999999999994221 122334556667753 334
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
.+|..+..||. +.++..|.+.... ++ +--.+.+++.++.+.+.+ ....+.+.+.+|++.....+
T Consensus 261 ~~G~~LlSGG~----E~VLv~Wq~~T~~--kq--fLPRLgs~I~~i~vS~ds--------~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 261 SDGAYLLSGGR----EGVLVLWQLETGK--KQ--FLPRLGSPILHIVVSPDS--------DLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cCCceEeeccc----ceEEEEEeecCCC--cc--cccccCCeeEEEEEcCCC--------CeEEEEecCceEEEEeccch
Confidence 47788888888 4567777665554 21 223466778887776543 55677788999999877664
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-Cceeec----ccccCC-----
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PPLLDF----ETKLKD----- 234 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~~~~~----~~~h~g----- 234 (826)
+... .-++.-+. .+.+ -..-.+-.+.+++.|-...++..+ .+.+.+|+.-. ..+..+ ...+.+
T Consensus 325 ~~k~--tIsgi~~~-~~~~---k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 325 EIKS--TISGIKPP-TPST---KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred hhhh--hccCccCC-Cccc---cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 4321 11111111 0000 122334567777888555555544 77777774321 111111 122223
Q ss_pred -ccee--eCCCCCEEEEEE--------CCC--cEEEEeCC--CCceeeeeecccccccccccCCCCeEEEEEeCCC-C-E
Q 003360 235 -GSQS--HSKVKNLFITGH--------SDG--AINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-R-V 297 (826)
Q Consensus 235 -~V~~--~s~~~~~l~Tgs--------~DG--tVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~-~ 297 (826)
++.+ .+..|.+++|+- .|| .+|+|-.. .....+...+. ..|+..+.+.+|.+.. . .
T Consensus 399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~-------~PH~~~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN-------NPHGNAFVATIFLNPTRSVR 471 (792)
T ss_pred EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe-------cCCCceeEEEEEecCcccce
Confidence 3344 566699999874 344 46789883 33332333333 5688666666665543 3 7
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
+++++.||.++||-+....... +.......+ .....++.++++++|+.||..|++|. |++|.+||..+
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~----------k~~s~W~c~-~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIY----------KKSSNWTCK-AIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred eEEeccCCeEEEEEEecccccC----------cCccceEEe-eeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 9999999999999996432211 011111100 12223688899999999998666655 56899999998
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
...+ .........++..+.|.... .....++.....++.+|++.+....-
T Consensus 540 ~~~l--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 540 KNEL--LCTEGSRNWPIAELLFTAQT----QNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred hhhh--hccccccccchHhHhhhccc----ccccceeeccCceEehHhhhhhheec
Confidence 5433 11112233444445544310 12234445567789999998777665
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-11 Score=126.17 Aligned_cols=198 Identities=14% Similarity=0.197 Sum_probs=129.0
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
+...+++.+++|.+++.+...- ....+..|.+.|.|..|+++|..|++++ ||.|++|....
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~r------------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSAR------------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred CcceEEEEcCCceEEEecccch------------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc
Confidence 3456678888899888665431 1223588999999999999999999998 99999997654
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.+..........|.| |.|+.+-++-+.. |.+.|=-+.... ..++ ...|++-|.+++|++.+.++++
T Consensus 136 -MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~----k~i~------WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 136 -MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS----KIIR------WRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred -hHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccccc----ceeE------EeccCcEEEEeecCccccceee
Confidence 222222334667788 8888775554433 234443332111 1122 3478899999999999999999
Q ss_pred EeCCCcEEEEEeCCC----CCccccceEEEeecCCCCeEEEEE---EEEeec-cCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 301 GDQSGMVRIFKLKYE----PHAIENSFLSFTGSKKGNSHIIHS---VKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 301 gs~dg~V~iwd~~~~----~~~~~~~~~~i~~s~~~~~~~~~~---~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
|++|-..+|||-... ...++-.+++++|+++. ...++. +++... .+.|..++||+||..+++|+..|.|.+
T Consensus 204 gGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~-~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK-DYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCceeEEeecccCcccccCChhccceeeeeecccc-ceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999997654 22333456666666652 222211 222222 344666666666666666666665543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-11 Score=121.35 Aligned_cols=149 Identities=17% Similarity=0.352 Sum_probs=115.3
Q ss_pred CEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
..+|++..+|+||+||. +++. ...|.++...++.+.|.. ....+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--
Confidence 67999999999999999 5443 223567777888888876 4578999999999999999954321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEec----CCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSD----QGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~----dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
.. ..+..+. .+-.|++.+-.++.+++|.+ |-.|.+||+|..+-.. ..+...|..-|+
T Consensus 108 -------------a~----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT 169 (376)
T KOG1188|consen 108 -------------AR----ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVT 169 (376)
T ss_pred -------------hh----eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcce
Confidence 00 2222223 45788888877888898874 6789999999877621 344567999999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+++|.|. +.+.|++||.||-|.+||...
T Consensus 170 ~lrFHP~-----~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 170 QLRFHPS-----DPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEEecCC-----CCCeEEeecccceEEeeecCC
Confidence 9999997 789999999999999999873
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-12 Score=134.86 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=159.7
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
..|...|+++.|+|....|++++.||++++|++....... ..+-.++ +.+..|.++|.|+++++++.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~---------~~~~epi----~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA---------EKDVEPI----LTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc---------ccceeee----EEEecccCceEEEEecCCce
Confidence 3466889999999999999999999999999995321100 0111222 67888999999999999999
Q ss_pred EEEEEecCCeEEEEecC---------CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 360 HLAVGSDQGYVYLLDTE---------GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~---------~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.+.+|+.||+|+.|++. .+..+ ..+..+|...|+.++++.. ...|++++.||+|+.|+.....
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl--~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVL--SGTLLGHTDAVWLLALSST------KDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchh--ccceeccccceeeeeeccc------ccceeeecCCceEEeeccCCcC
Confidence 99999999999999543 22233 3344689999999999985 7789999999999999988655
Q ss_pred eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeee
Q 003360 431 MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLY 510 (826)
Q Consensus 431 ~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~ 510 (826)
. .++ ..+......+++.+.+..-...-.+. .....++ .+ +- ....++++.-.. .....
T Consensus 430 ~-~~f-~~~~e~g~Plsvd~~ss~~a~~~~s~------~~~~~~~-----~~-~e---v~s~~~~~~s~~----~~~~~- 487 (577)
T KOG0642|consen 430 P-CTF-GEPKEHGYPLSVDRTSSRPAHSLASF------RFGYTSI-----DD-ME---VVSDLLIFESSA----SPGPR- 487 (577)
T ss_pred c-ccc-CCccccCCcceEeeccchhHhhhhhc------ccccccc-----hh-hh---hhhheeeccccC----CCccc-
Confidence 5 443 34444555666665542100000000 0000000 00 00 001122221110 00000
Q ss_pred eeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCC
Q 003360 511 KKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGN 590 (826)
Q Consensus 511 k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~ 590 (826)
..+...-++..+...-.+....|++|+++..-..+++.+....-..+....+.+++-..++.+.||.+.+|.-.
T Consensus 488 ------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 488 ------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ------ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 00111111111445556667788888888777777777653222222222233677777888888888887653
Q ss_pred e
Q 003360 591 Q 591 (826)
Q Consensus 591 ~ 591 (826)
.
T Consensus 562 ~ 562 (577)
T KOG0642|consen 562 V 562 (577)
T ss_pred c
Confidence 3
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=128.57 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=147.0
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEecc
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAK 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~ 220 (826)
....-++++...|+++++|....+...+-... .......|||++|-|.++.++++. ++.+-+|+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~-------------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE-------------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhc-------------ccccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 33455899999999999998773222111111 123347899999999887776655 777666654
Q ss_pred CCCceeecccccCCccee----eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 221 SVPPLLDFETKLKDGSQS----HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 221 ~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
.. ..++.. ..+++..+... .|-. ..+. ++... ......|...+|+||+
T Consensus 250 ~~----------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~rN--Pv~~w--------~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 250 EI----------VCGATAPSYQALKDGDQFAIL-------TSKSKKTRN--PVARW--------HIGEGSINEFAFSPDG 302 (636)
T ss_pred cc----------cccCCCCcccccCCCCeeEEe-------eeeccccCC--cccee--------EeccccccceeEcCCC
Confidence 21 111111 33444444332 2222 1100 11111 1223588999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
++||+.++||.+||||+.+..... . ++ ..-+...|++|||||++|++|++|-.|.||.+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg------------~-------mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLG------------V-------MK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHH------------H-------HH--hhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 999999999999999998543210 0 00 01356899999999999999999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCC------------------------------------------CCcEEE
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGF------------------------------------------EKNFLV 413 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~------------------------------------------d~~~l~ 413 (826)
...+++..- .+|.++|..++|.|+..... ..-.+-
T Consensus 362 ~erRVVARG---qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfG 438 (636)
T KOG2394|consen 362 EERRVVARG---QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFG 438 (636)
T ss_pred ccceEEEec---cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEee
Confidence 999988433 58999999999996432110 113466
Q ss_pred EEECCCcEEEEECCC
Q 003360 414 IATKDSSVLVLDSDN 428 (826)
Q Consensus 414 sgs~Dg~V~iwd~~t 428 (826)
+.+.|..+.+||+.-
T Consensus 439 SVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 439 SVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccceEEEEecch
Confidence 788899999999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-11 Score=127.67 Aligned_cols=266 Identities=19% Similarity=0.254 Sum_probs=160.2
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
.+.+|.+.|++|+..|.|.+|++|+.||+|+||.+.++.+ ++.....+.|.|++|+|.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc----------------------vr~~~~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC----------------------VRTVQFDSEIRSVAWNPL 452 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE----------------------EEEEeecceeEEEEecCC
Confidence 3568999999999999999999999999999999996655 666667788999999997
Q ss_pred CC--EEEEEecCCeEEEEecCCCeeEEe---eecccC---CCCC-eeEEEEeecccCCCCCcEEEEEECCCcEE--EEEC
Q 003360 358 SQ--HLAVGSDQGYVYLLDTEGPTVLYQ---KHIASD---ISSG-IVSLQFETCSLQGFEKNFLVIATKDSSVL--VLDS 426 (826)
Q Consensus 358 g~--~lasGs~dG~V~vwD~~~~~~l~~---~~~~~~---~~~~-V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~--iwd~ 426 (826)
+. .||++.... +.|.+..-|.-+.. ...... -..+ -.-+.|.............++-+....|+ -|..
T Consensus 453 ~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 453 SDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred CCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 65 456655554 66777654422210 000000 0001 11223443211111112233333344442 2332
Q ss_pred CCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccc
Q 003360 427 DNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVK 506 (826)
Q Consensus 427 ~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~ 506 (826)
+ |.++.+. .+....+.+.++-+. ....+..+.+.+...+...|++...++++|+.+.||||+|. .+
T Consensus 532 k-GDYlatV--~~~~~~~~VliHQLS------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~-----kq 597 (733)
T KOG0650|consen 532 K-GDYLATV--MPDSGNKSVLIHQLS------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS-----KQ 597 (733)
T ss_pred C-CceEEEe--ccCCCcceEEEEecc------cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh-----HH
Confidence 2 5555442 222222223333332 11112222222222222367888899999999999999997 33
Q ss_pred eeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccCCcc--cccccc-----ccceeecCCCCCCCcccceec
Q 003360 507 KVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLPELS--LLKETS-----IRGFVYLTPKPNSLSNTLMCS 578 (826)
Q Consensus 507 k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP~L~--~l~~~s-----l~~~~~~~~~~~~~~~~~~~~ 578 (826)
..+.+ +. ..|-|.+.+.. ++|..|++..-++.+..+.|. |. ++.... +..++|+ ..+--..++
T Consensus 598 elvKk--L~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDld-lsskPyk~lr~H~~avr~Va~H-----~ryPLfas~ 668 (733)
T KOG0650|consen 598 ELVKK--LL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD-LSSKPYKTLRLHEKAVRSVAFH-----KRYPLFASG 668 (733)
T ss_pred HHHHH--Hh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc-cCcchhHHhhhhhhhhhhhhhc-----cccceeeee
Confidence 22333 33 68889888877 899999999999999888764 33 444432 4467887 455556677
Q ss_pred cCCCcEEEEcC
Q 003360 579 SWDGELIMVNG 589 (826)
Q Consensus 579 s~~G~i~~~~g 589 (826)
|+||++++..|
T Consensus 669 sdDgtv~Vfhg 679 (733)
T KOG0650|consen 669 SDDGTVIVFHG 679 (733)
T ss_pred cCCCcEEEEee
Confidence 88899988776
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-10 Score=114.41 Aligned_cols=208 Identities=15% Similarity=0.220 Sum_probs=142.3
Q ss_pred ceeeec-ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce--eec----ccccCCccee--eCC--CCCEEEEEECC
Q 003360 184 VMLKMP-FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL--LDF----ETKLKDGSQS--HSK--VKNLFITGHSD 252 (826)
Q Consensus 184 ~~~~l~-~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~--~~~----~~~h~g~V~~--~s~--~~~~l~Tgs~D 252 (826)
..-.|+ .+.+.|.|+.|.|++..+++-.|..|.+|+...... ... ...+....++ |+| +++.++| ..|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d 192 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSD 192 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCC
Confidence 333455 556799999999999999888899999996443222 111 1223333444 655 6776666 468
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
++++.||..... ..+.++ ..|+..|..|.|+|+-+ +|++|+.||.|+|||.+......
T Consensus 193 ~tl~~~D~RT~~--~~~sI~-------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv------------ 251 (370)
T KOG1007|consen 193 STLQFWDLRTMK--KNNSIE-------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV------------ 251 (370)
T ss_pred CcEEEEEccchh--hhcchh-------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc------------
Confidence 999999994322 123344 56888999999999875 68899999999999998543310
Q ss_pred CCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCe----eEE----------------------ee
Q 003360 332 GNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPT----VLY----------------------QK 384 (826)
Q Consensus 332 ~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~----~l~----------------------~~ 384 (826)
.....|.-.|.++.|+|.. +++++|+.|..|.+|....-. +.+ ..
T Consensus 252 --------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l 323 (370)
T KOG1007|consen 252 --------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL 323 (370)
T ss_pred --------cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence 1222344469999999954 578899999999999764321 110 01
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.....|...|.+++|+.. |.=++++.+-||.+.|=..
T Consensus 324 ~tydehEDSVY~~aWSsa-----dPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSA-----DPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccceEEEeeccC-----CCeeEEEeccCceEEeecC
Confidence 123568889999999986 4556677888998876544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=123.36 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=112.4
Q ss_pred ccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+.+|.++|..++|+|. ...+|+||+|.+|.||++-.+-... +-.... +.+..|...|--++|+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----------~ltepv---v~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----------DLTEPV---VELYGHQRRVGLVQWHP 141 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----------Ccccce---EEEeecceeEEEEeecc
Confidence 45789999999999995 4789999999999999997542211 111111 44556777899999999
Q ss_pred CC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 357 NS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 357 ~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.- +.|++++.|.+|.+||+.++..+.+. .|..-|.++.|+. ||.+|++.+.|..|+|||.++|+.+...
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~------dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNR------DGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEecc------CCceeeeecccceeEEEcCCCCcEeeec
Confidence 53 57889999999999999999988554 3889999999998 7999999999999999999999999886
Q ss_pred eccCC
Q 003360 436 LIHPK 440 (826)
Q Consensus 436 ~~~~~ 440 (826)
..|..
T Consensus 212 ~~heG 216 (472)
T KOG0303|consen 212 VAHEG 216 (472)
T ss_pred ccccC
Confidence 55544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=135.41 Aligned_cols=199 Identities=14% Similarity=0.163 Sum_probs=131.4
Q ss_pred cccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
..|...+.. .++.+.+++||+.||+||+||...-.... ....+.......+..+.++.+++.+..+|+|+.||.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 446666655 55666999999999999999982211000 001111122234579999999999999999999999
Q ss_pred EEEEEeCCCCCcc-------------ccceEEEe-ecC-CCCeE----------EEEE---------EEEeeccCCeEEE
Q 003360 307 VRIFKLKYEPHAI-------------ENSFLSFT-GSK-KGNSH----------IIHS---------VKVMKINGSIISL 352 (826)
Q Consensus 307 V~iwd~~~~~~~~-------------~~~~~~i~-~s~-~~~~~----------~~~~---------~~~~~~~~~V~~l 352 (826)
|++.++......+ ...+..+. +.. .+... ..+. ++....+|.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 9999998631110 00111111 100 01100 0000 2223337889999
Q ss_pred EEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCce
Q 003360 353 NMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNM 431 (826)
Q Consensus 353 ~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~ 431 (826)
+.+|.+.++++|+..|.+.+||+|=+..+ ..+...+..+|..+...+. ++-++-.+.+++ ..+.|.+|+..+|.+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i--~sw~~P~~~~i~~v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPI--LSWEHPARAPIRHVWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCcee--ecccCcccCCcceEEeecc--CCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999988877 4444567789999988885 221233344444 577899999999976
Q ss_pred EEee
Q 003360 432 LSTN 435 (826)
Q Consensus 432 i~~~ 435 (826)
-.++
T Consensus 1278 ~~vl 1281 (1431)
T KOG1240|consen 1278 QTVL 1281 (1431)
T ss_pred eEEE
Confidence 6665
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=129.42 Aligned_cols=157 Identities=13% Similarity=0.264 Sum_probs=116.5
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|.| |.+.|++++.||.|++|.+...-+ -......+..+..|...|+.+.|+|- ...|++++.|-+|++||+....
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl---~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGL---PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK 711 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCC---CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh
Confidence 666 456899999999999999943321 11122224456789999999999995 5789999999999999998543
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCee
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIV 395 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~ 395 (826)
.. .++..|.+.|..++|||+|+++|+.+.||+|+||..+++.. ++...-. ....-.
T Consensus 712 ~~---------------------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgA 768 (1012)
T KOG1445|consen 712 LY---------------------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGA 768 (1012)
T ss_pred hh---------------------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--ccCcce
Confidence 21 56677899999999999999999999999999999987653 3222211 112223
Q ss_pred EEEEeecccCCCCCcEEEEEECCC----cEEEEECC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDS----SVLVLDSD 427 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~ 427 (826)
.|.|.- |+.++++.+.|. .|.+||..
T Consensus 769 Ri~wac------dgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 769 RILWAC------DGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred eEEEEe------cCcEEEEecccccchhhhhhhhhh
Confidence 466665 688888888766 46777765
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-10 Score=110.23 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=121.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC-
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH- 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~- 317 (826)
++|.+++|++|..+|.|-|..+..-.-..-+.-..........|+.+|..++|+ ..+|++|+. |.|+=|.++....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es 94 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEES 94 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhh
Confidence 889999999999999999998721110000000000122236789999999998 456777754 9999999974321
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.+......+. .+ .+.....- .|++|-..|..+-++.+..|+.++-||+.++++.... .+|.+.|.+
T Consensus 95 ~~~K~lwe~~-----~P-----~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~---rGHtDYvH~ 161 (325)
T KOG0649|consen 95 LATKRLWEVK-----IP-----MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY---RGHTDYVHS 161 (325)
T ss_pred ccchhhhhhc-----Cc-----cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE---cCCcceeee
Confidence 1100000000 00 11111122 3899999987777777779999999999999987444 589999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.-... ...+++|+.||++++||.+|++++.++
T Consensus 162 vv~R~~------~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 162 VVGRNA------NGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred eeeccc------CcceeecCCCccEEEEeccccceeEEe
Confidence 987653 778999999999999999999999875
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-10 Score=129.38 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=141.0
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCce--e-e---cccccCCccee--eC--CCCCEEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPL--L-D---FETKLKDGSQS--HS--KVKNLFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~--~-~---~~~~h~g~V~~--~s--~~~~~l~Tgs~DGtVr 256 (826)
-.-.+.|+|++|+|..+.+++|+ +|.|.+|+...... . . ....|...++. |- +.+.-+++++.||.|.
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 34567899999999888877766 99999996544222 1 1 13457777777 43 3335689999999999
Q ss_pred EEeCCCCce-eeeeecccccccccccCC-CCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPLF-LLILSLKQQSEKDFSLSG-IPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~~-~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
.|++..-.. .....+.......-..+. ..+++++|.+. -..|++|++.|.|.-=.......... +. ..
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----~~----~~ 389 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----VS----YK 389 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-----cc----cc
Confidence 998732111 000001110000001111 68999999885 46899999999886522221111000 00 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.+ .....|.++|+++.++|-+..+...+.|.+|+||... ....++.. ..+...|++++|+|. -...+
T Consensus 390 ~~----~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSpt-----rpavF 457 (555)
T KOG1587|consen 390 GH----STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPT-----RPAVF 457 (555)
T ss_pred cc----ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---hhccceeeeeEEcCc-----CceEE
Confidence 11 2445678999999999988766655559999999987 55555333 345667999999996 34566
Q ss_pred EEEECCCcEEEEECCC
Q 003360 413 VIATKDSSVLVLDSDN 428 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~t 428 (826)
+++..||.|.+||+..
T Consensus 458 ~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EEEcCCCceehhhhhc
Confidence 7777899999999973
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-08 Score=111.66 Aligned_cols=233 Identities=22% Similarity=0.320 Sum_probs=161.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEE-eeCCC-eEEE-ec-CCcEEEeccC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKL-ITGNS-FILS-SA-DEDYSLLAKS 221 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~f-s~~~~-~l~~-~~-d~~i~~w~~~ 221 (826)
.++....++.+.+|+...-. .....+..+. ..+..+.+ .+++. .++. +. |+.+.+|+..
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGE----------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred EEEEecCCCcEEEEEcCCCc----------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 34445568888888876611 1112223322 36777777 67777 3333 34 8899999766
Q ss_pred C-CceeecccccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-
Q 003360 222 V-PPLLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR- 296 (826)
Q Consensus 222 ~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~- 296 (826)
. .........|...|.+ |++++..+++++. |+.+++|+...... +.. +..|...|.+++|+|++.
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LST--------LAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEe--------eccCCCceEEEEEcCCcce
Confidence 4 2233333678888886 9999999999886 99999999954221 111 234778999999999998
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+++++.|+.|++||........ .....|...+ ...|++++.++++++.|+.+++||++
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLR--------------------STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEe--------------------eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 55555999999999776221100 0122233333 22899999889999999999999998
Q ss_pred CCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 377 GPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 377 ~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.... +... ..|...|.++.|.| ++..+++++.|+.+.+|+..++......
T Consensus 272 ~~~~~~~~~---~~~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 272 SSSSLLRTL---SGHSSSVLSVAFSP------DGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred CCCcEEEEE---ecCCccEEEEEECC------CCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 7765 3222 46788999999998 4777888999999999999887766554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=137.07 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=156.9
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
-.+.+|...|.|+.|...|.++++|+ |..+++|.........-..+|.+.++. .+.++.++++++.|..||+|-+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 34678999999999999999999999 888999987665555555899999999 666777899999999999999955
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc--------cc-cce----------
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--------IE-NSF---------- 323 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~--------~~-~~~---------- 323 (826)
... +..+.+|.++|++|+|+|-. +.+.||++++||.+-.... .+ .-+
T Consensus 264 ~~p----------vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 264 GAP----------VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred Cch----------HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 442 22234799999999999964 7889999999999822110 00 000
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCC
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS 392 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~ 392 (826)
.+.+.+.++..-. . ..-+++|..++ ..++++-.+-.+.+|++..+..++ ...+|..
T Consensus 330 ~f~Tgs~d~ea~n---~-------e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd 396 (1113)
T KOG0644|consen 330 RFLTGSRDGEARN---H-------EFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSD 396 (1113)
T ss_pred ccccccCCccccc---c-------hhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhccccc
Confidence 1112222222210 0 01122222222 344555566778899998887773 3458888
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+..+.++|. +..+..+++.||...|||+--|..+..+
T Consensus 397 ~~yvLd~Hpf-----n~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 397 EVYVLDVHPF-----NPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred ceeeeeecCC-----CcHhhhhccCCCceEeeecccCCcceee
Confidence 9999999997 6778889999999999999988877665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-09 Score=104.49 Aligned_cols=301 Identities=11% Similarity=0.114 Sum_probs=156.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
++-+..+++|. .|-+.+++|.++| .++++.+........+....+.. +..+=+-+ ..|.
T Consensus 4 ~~~~~lsvs~N-QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~--------------~veMLfR~-----N~la 62 (346)
T KOG2111|consen 4 EEPKTLSVSFN-QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFK--------------IVEMLFRS-----NYLA 62 (346)
T ss_pred ccCceeEEEEc-cCCceEEEEecCc-eEEEecCchhhhhhhccccCchh--------------hhhHhhhh-----ceEE
Confidence 45567789995 6999999998777 68888776411100000000011 11110100 1233
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
+.||..-..-+.-.++.++... +.....+.+..++.++.+-.. -+|+..++.|++|.-..--..+..
T Consensus 63 LVGGg~~pky~pNkviIWDD~k--~~~i~el~f~~~I~~V~l~r~-----------riVvvl~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLK--ERCIIELSFNSEIKAVKLRRD-----------RIVVVLENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred EecCCCCCCCCCceEEEEeccc--CcEEEEEEeccceeeEEEcCC-----------eEEEEecCeEEEEEcCCChhheee
Confidence 3444322222222333333222 222355666777777665432 256666778888865531011100
Q ss_pred ccCCCCCCCCccceeeecccCC-CEEEEEEeeCCCeEEEec--CCcEEEeccCCCce--eecccccCCccee--eCCCCC
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDS-SITAMKLITGNSFILSSA--DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~-~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~~~~ 244 (826)
.. ....| .+.+++-..+...|+.-+ -|.+.+-+...... ......|...|.| ...+|.
T Consensus 130 ~e---------------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt 194 (346)
T KOG2111|consen 130 IE---------------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT 194 (346)
T ss_pred ee---------------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc
Confidence 00 00001 122222222223333322 45565553221111 1112679999999 889999
Q ss_pred EEEEEECCCc-EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc--c
Q 003360 245 LFITGHSDGA-INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE--N 321 (826)
Q Consensus 245 ~l~Tgs~DGt-VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~--~ 321 (826)
++||++..|| |||||...+.+ +++++.- .....|.+|+|+|++.+||++|..|+|.||.++....... .
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~--l~E~RRG------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~S 266 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTL--LQELRRG------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESS 266 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcE--eeeeecC------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccc
Confidence 9999999998 68999955552 3445421 1237899999999999999999999999999986532111 1
Q ss_pred ceEEEe-ecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 322 SFLSFT-GSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 322 ~~~~i~-~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
+..... .-+....- .+. .++....++...++|-.+.+.|+..+.||+-
T Consensus 267 Sl~~~~~~lpky~~S-~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 267 SLSFKRLVLPKYFSS-EWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred cccccccccchhccc-ceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 111000 00000000 000 2333335566677777664456556666764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-10 Score=117.07 Aligned_cols=212 Identities=13% Similarity=0.144 Sum_probs=147.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc------CCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK------SVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~------~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
+..|.+-|.++.|+.++++|++|+ |..+++|+. +.+ ++..+..+|...|.| |....+.+.+|..+|+|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 568999999999999999999999 888999953 232 333345678889999 8888999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.|+...+. ++.... .-..+.|..+..+|....|++.+.+|.|.+||.+..+... . .
T Consensus 132 HDiEt~qs--i~V~~~------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~--~-----------~--- 187 (609)
T KOG4227|consen 132 HDIETKQS--IYVANE------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI--S-----------L--- 187 (609)
T ss_pred eeccccee--eeeecc------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC--c-----------e---
Confidence 99944442 222220 1123689999999999999999999999999998554311 0 1
Q ss_pred EEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeE-EeeecccCC---CCCeeEEEEeecccCCCCCcEE
Q 003360 338 HSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDI---SSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~---~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+-..........+.|+|.. .+|++.++.|-+-|||++.++-. +......+. ...-.++.|++ +|..+
T Consensus 188 --~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~------~G~Q~ 259 (609)
T KOG4227|consen 188 --VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP------SGNQF 259 (609)
T ss_pred --eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC------CCCee
Confidence 1011113346677888854 57788999999999999876532 211111111 11234567777 47777
Q ss_pred EEEECCCcEEEEECCCCce
Q 003360 413 VIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~ 431 (826)
++--....-.+||..+.++
T Consensus 260 msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred hhhhccCCCEEeeeecccc
Confidence 7766555566777775443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-09 Score=107.23 Aligned_cols=301 Identities=15% Similarity=0.171 Sum_probs=171.6
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
...+...+| ..++..|.+|+.||.-. ++.... -+.. .......-|.-+=+. +.|++
T Consensus 5 ~~ti~~~~~-Nqd~~~lsvGs~~Gyk~-~~~~~~---------------~k~~-~~~~~~~~IvEmLFS------SSLva 60 (391)
T KOG2110|consen 5 KPTINFIGF-NQDSTLLSVGSKDGYKI-FSCSPF---------------EKCF-SKDTEGVSIVEMLFS------SSLVA 60 (391)
T ss_pred Ccceeeeee-ccceeEEEccCCCceeE-EecCch---------------HHhh-cccCCCeEEEEeecc------cceeE
Confidence 567888898 46999999999999754 444332 0000 000011112222121 23333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.-+.+. +..+.++.+...+... .+....++.++.+- ...++|++ ..++|+||...++-+-
T Consensus 61 iV~~~q--pr~Lkv~~~Kk~~~IC----e~~fpt~IL~VrmN----------r~RLvV~L-ee~IyIydI~~MklLh--- 120 (391)
T KOG2110|consen 61 IVSIKQ--PRKLKVVHFKKKTTIC----EIFFPTSILAVRMN----------RKRLVVCL-EESIYIYDIKDMKLLH--- 120 (391)
T ss_pred EEecCC--CceEEEEEcccCceEE----EEecCCceEEEEEc----------cceEEEEE-cccEEEEecccceeeh---
Confidence 322222 3456666555444332 22233344433221 12334444 4569999998853211
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
.....+.+.-.+.+++++..+.+++. ++ .|.|.+|+...-.....-..|++.+.+ |+++|.+||
T Consensus 121 -----------TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llA 189 (391)
T KOG2110|consen 121 -----------TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLA 189 (391)
T ss_pred -----------hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEE
Confidence 11112233344666666667778887 33 678999976543333333689999999 999999999
Q ss_pred EEECCCcE-EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce---
Q 003360 248 TGHSDGAI-NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF--- 323 (826)
Q Consensus 248 Tgs~DGtV-riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~--- 323 (826)
|++..|+| ||+.+..+++ +++++.- .....|.+|+|+|++.+|++.+..++|.||++.........+.
T Consensus 190 TASeKGTVIRVf~v~~G~k--l~eFRRG------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~ 261 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQK--LYEFRRG------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAG 261 (391)
T ss_pred EeccCceEEEEEEcCCccE--eeeeeCC------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCC
Confidence 99999985 8999944442 3555421 1126899999999999999999999999999986532211110
Q ss_pred --EEEeecCCCCe---EEE----E---EEEEeec--cC--CeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 324 --LSFTGSKKGNS---HII----H---SVKVMKI--NG--SIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 324 --~~i~~s~~~~~---~~~----~---~~~~~~~--~~--~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
....+++.... -.+ . ....... .+ .+..+.-.+...++.+++.||.++.+.+.
T Consensus 262 ~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~ 330 (391)
T KOG2110|consen 262 TSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLP 330 (391)
T ss_pred CcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence 01111110000 000 0 0111111 11 24444434577889999999999998763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=120.83 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=116.8
Q ss_pred EEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 207 ILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 207 l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
+++.+||.+.+.+.... .......|.+.+.+ |+|+|.-|+|+++||.|+||.-++-.... + -....
T Consensus 79 ~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt---l--------~Q~~~ 146 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST---V--------VQNEE 146 (737)
T ss_pred EEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH---H--------hhcCc
Confidence 33444888888765542 22233679999999 99999999999999999999987654211 1 11336
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
+|.|++|.|++..++-+. .|++.|=-+..+.. . ++...|.+-|.++.|++...++++|
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k----------------~-----i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK----------------I-----IRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccc----------------e-----eEEeccCcEEEEeecCccccceeec
Confidence 899999999987665543 33455544442211 1 6777889999999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
++|-..+|||- .|..+|+.. .|.-+|++++|.|
T Consensus 205 GED~kfKvWD~-~G~~Lf~S~---~~ey~ITSva~np 237 (737)
T KOG1524|consen 205 GEDFRFKIWDA-QGANLFTSA---AEEYAITSVAFNP 237 (737)
T ss_pred CCceeEEeecc-cCcccccCC---hhccceeeeeecc
Confidence 99999999998 466665543 6778999999999
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=112.03 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=139.8
Q ss_pred cccCCCEEEEEEeeCCCeEEEe-c----CC----cEEEeccCCC----c------eeecccccCCccee--eCCCCCEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSS-A----DE----DYSLLAKSVP----P------LLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~-~----d~----~i~~w~~~~~----~------~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
..|.+.|..++-+|-.+.+++. - |. .+.+|....+ . +..+...+-|.|.| |.|++..++
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence 3455788888888866655542 1 11 2567843211 1 11122346678888 999999888
Q ss_pred EEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 248 TGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+-. |..|.+|++ ..... +..+..... ..+....++-+|+| ++..+++. .|+++..||+++..+..
T Consensus 140 sm~-dn~i~l~~l~ess~~--vaev~ss~s---~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~----- 207 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKI--VAEVLSSES---AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN----- 207 (370)
T ss_pred Eec-cCceEEEEcccCcch--heeeccccc---ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc-----
Confidence 765 889999999 44431 111221101 12445677888998 56666655 67899999999653321
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
-....|...|..|.|+|+-+ +||+|++||.|++||+|..+.. .....+|.-.|+++.|.|.
T Consensus 208 ---------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--v~el~~HsHWvW~VRfn~~- 269 (370)
T KOG1007|consen 208 ---------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--VQELPGHSHWVWAVRFNPE- 269 (370)
T ss_pred ---------------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--ccccCCCceEEEEEEecCc-
Confidence 01112344599999999876 4788999999999999987654 3444689999999999995
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
-.++|++|++|..|.+|...
T Consensus 270 ----hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 270 ----HDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ----cceEEEecCCCceeEEEecc
Confidence 47889999999999999876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=111.91 Aligned_cols=206 Identities=9% Similarity=0.054 Sum_probs=125.2
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccC-CCceeecc-cccCCccee--eCCCCCEEEEEE-CCCcEEEEeCC-CCc
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKS-VPPLLDFE-TKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVS-CPL 264 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~-~~~~~~~~-~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s-~~~ 264 (826)
+....++++|+++.++++. ++.+.+|+.. ...+.... ....+.... ++|++++|++++ .++.|.+||+. .+.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 4566789999999987764 6778888543 21221111 112222222 899999777765 48999999994 222
Q ss_pred e-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 265 F-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 265 ~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
. ..+..+ .+......++|+|++++++++ ..++.|.+||+......... .... ..
T Consensus 115 ~~~~~~~~---------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~-----------~~~~---~~- 170 (330)
T PRK11028 115 PVAPIQII---------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ-----------EPAE---VT- 170 (330)
T ss_pred CCCceeec---------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc-----------CCCc---ee-
Confidence 1 011111 122346778999999888655 45699999999742110000 0000 01
Q ss_pred eeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCC--Cee--EEeeecccC---CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEG--PTV--LYQKHIASD---ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~--~~~--l~~~~~~~~---~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.........++|+|+|++++++++ +++|.+||+.. ++. +........ .......+.|+| ++.++++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p------dg~~lyv 244 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP------DGRHLYA 244 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC------CCCEEEE
Confidence 111233577999999999988887 89999999973 332 222221101 111233577888 6888988
Q ss_pred EEC-CCcEEEEECCC
Q 003360 415 ATK-DSSVLVLDSDN 428 (826)
Q Consensus 415 gs~-Dg~V~iwd~~t 428 (826)
+.. +++|.+|+...
T Consensus 245 ~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 245 CDRTASLISVFSVSE 259 (330)
T ss_pred ecCCCCeEEEEEEeC
Confidence 854 78999999864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=117.35 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=127.5
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCC----CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS----CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s----~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.+|.|.|.+ |+.++++|++|+.|-.+++|++. .+...+|.... ..|...|.|++|....+.|.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-------~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-------HPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-------CccccceEEEEEccCCeeEecCCC
Confidence 679999999 99999999999999999999982 22212222122 346689999999999999999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+|+|.+-|+++.+. +....+ .+.|..|..+|..+.+++.+.+|.|.+||.+...-
T Consensus 126 ~~~VI~HDiEt~qs----------------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 126 WGTVIKHDIETKQS----------------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cceeEeeeccccee----------------------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 99999999985432 112222 45799999999999999999999999999987552
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
-...-+.........++.|.|. ...+|++.+.-+-+-+||.+..
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~-----~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPE-----TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeeecCCCccceeeeecCC-----CceeEEeccccCCCCceeeccc
Confidence 1112223345667788889885 4667888888899999998843
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-08 Score=108.31 Aligned_cols=214 Identities=10% Similarity=0.141 Sum_probs=127.6
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCC-Cce---eecccccCCccee-eCCCCCEEE-EEECCCcEEEEeCCC-Cc
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSV-PPL---LDFETKLKDGSQS-HSKVKNLFI-TGHSDGAINFWDVSC-PL 264 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~-~~~---~~~~~~h~g~V~~-~s~~~~~l~-Tgs~DGtVriWD~s~-~~ 264 (826)
....++|+|+++.++++. ++.+.+|+... ... .....++.+.-.. ++|++++++ +...+++|.+||+.. ..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 356789999999999876 78899995532 111 1110111121222 899998775 555679999999943 33
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
+.. .... ...+ ..+.....+.|+|++++|+++.. +++|.+|++....... ..+..+..-+.. .
T Consensus 161 l~~---~~~~-~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~----------~ 224 (330)
T PRK11028 161 LVA---QEPA-EVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPAD----------F 224 (330)
T ss_pred ccc---cCCC-ceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCc----------C
Confidence 100 0000 0000 11245678999999999988877 8999999997321100 000100000000 0
Q ss_pred eccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-CC
Q 003360 344 KINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-DS 419 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg 419 (826)
........+.++|+|++++++.. ++.|.+|++.... ......... ......+.|++ |+.+|+++.. ++
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~------dg~~l~va~~~~~ 296 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDH------SGKYLIAAGQKSH 296 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECC------CCCEEEEEEccCC
Confidence 01122456899999999998864 7899999995432 111111111 12445678888 6999998775 88
Q ss_pred cEEEEECC--CCce
Q 003360 420 SVLVLDSD--NGNM 431 (826)
Q Consensus 420 ~V~iwd~~--tg~~ 431 (826)
+|.+|+.. +|.+
T Consensus 297 ~v~v~~~~~~~g~l 310 (330)
T PRK11028 297 HISVYEIDGETGLL 310 (330)
T ss_pred cEEEEEEcCCCCcE
Confidence 99999764 5554
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=110.63 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=156.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
.-.+|+|.+|++|...++.+- ...+.+|..... ...++ ..|...|++ |.|..+.|+||+.|..-.+|.. ++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 446899999999999999987 667888854332 23333 568888888 9999999999999999999999 77
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
....+...|. .+..++++|.|+|....||+|+....|.||-++..+.= . + .. ..-
T Consensus 88 ~~WkptlvLl--------RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----W-V------sK-----hik 142 (361)
T KOG1523|consen 88 GTWKPTLVLL--------RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----W-V------SK-----HIK 142 (361)
T ss_pred CeeccceeEE--------EeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----e-h------hh-----hhC
Confidence 7654433332 35578999999999999999999999999998744220 0 0 00 111
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-------------EEe--eecccCCCCCeeEEEEeecccCCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-------------LYQ--KHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-------------l~~--~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
.++...|++++|+|++-++|.|+.|+.+||+..-=..+ .|- +.......+.|..+.|++
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~------ 216 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP------ 216 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC------
Confidence 23367799999999999999999999999997521100 000 001124557899999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCc
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++..|+-.+.|++|.+-|.....
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCc
Confidence 59999999999999999988664
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-09 Score=120.00 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=132.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-C---CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEE-
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-D---EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFW- 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d---~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriW- 258 (826)
.+..|...+...+|+|+++.++..+ + ..+.+|+........+ ....+...+ |+|+|+.|+.++ .||.++||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3566778899999999999998865 2 2588887544322222 111222223 999999887764 68887776
Q ss_pred -eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 -DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 -D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.+..... + ..+...+....|+|+++.|+.+ ..+|...||++..... ...
T Consensus 277 ~d~~~~~~~~---l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---------------~~~- 329 (429)
T PRK01742 277 MGANGGTPSQ---L--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---------------GAS- 329 (429)
T ss_pred EECCCCCeEe---e--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------------CeE-
Confidence 444443211 2 2344567889999999977655 4678999999863211 010
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
. ..+.+ .+.+|+|+|++|++++.++ +.+||+.++....... .. ...+..|+| |+.+|+.++
T Consensus 330 ---~--l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sP------dG~~i~~~s 390 (429)
T PRK01742 330 ---L--VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISP------NGIMIIYSS 390 (429)
T ss_pred ---E--ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECC------CCCEEEEEE
Confidence 1 11222 4578999999999888776 4569998886542111 11 224567888 699999999
Q ss_pred CCCcEEEEEC--CCCceEEeee
Q 003360 417 KDSSVLVLDS--DNGNMLSTNL 436 (826)
Q Consensus 417 ~Dg~V~iwd~--~tg~~i~~~~ 436 (826)
.++.+.+|.+ .+|+.+..+.
T Consensus 391 ~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 391 TQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred cCCCceEEEEEECCCCceEEcc
Confidence 9998887775 3577766653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-09 Score=114.57 Aligned_cols=284 Identities=14% Similarity=0.152 Sum_probs=173.6
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
|...-+.+..+|||+++++.+ .-.|++|+... ..+.|+......+.. .+.|-..++--..|.+|.+....+..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h- 127 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH- 127 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence 344567899999999999876 55788886543 233342333333333 45555556666788888877654433
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+.++-+ ..-..++++.- ..++++| ....|.=+++..+... ....
T Consensus 128 ---y~~RIP---------~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL----------------------~P~~ 172 (703)
T KOG2321|consen 128 ---YRTRIP---------KFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFL----------------------NPFE 172 (703)
T ss_pred ---eeeecC---------cCCccccccCCCccEEEee-cCcceEEEEccccccc----------------------cccc
Confidence 222210 12234555543 3444444 4445655666644331 1111
Q ss_pred c-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC---CC-----CCeeEEEEeecccCCCCCcEEEEE
Q 003360 345 I-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD---IS-----SGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 345 ~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~---~~-----~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. .+.+.++.+++...+|++|+.+|.|-.||.+....+-+..+... +. ..|+++.|.. |+-.+++|
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d------~gL~~aVG 246 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD------DGLHVAVG 246 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC------CceeEEee
Confidence 1 36799999999999999999999999999998876644433222 22 3499999997 58999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
+++|.|.|||+++.+.+..- .......+..+.+++. ..+.-|+.+-...++|
T Consensus 247 ts~G~v~iyDLRa~~pl~~k--dh~~e~pi~~l~~~~~--------------------------~~q~~v~S~Dk~~~ki 298 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLVK--DHGYELPIKKLDWQDT--------------------------DQQNKVVSMDKRILKI 298 (703)
T ss_pred ccCCcEEEEEcccCCceeec--ccCCccceeeeccccc--------------------------CCCceEEecchHHhhh
Confidence 99999999999988766431 1222233444444431 1234566666678999
Q ss_pred EeccccccccceeeeeeecC--CCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 496 YSLSHAVQGVKKVLYKKKFH--SSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~--~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
|+-. ..+.+..+--. ....|.. +..-.+.+...++.|..+-+|+|-+.-.
T Consensus 299 Wd~~-----~Gk~~asiEpt~~lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 299 WDEC-----TGKPMASIEPTSDLNDFCFV-----PGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred cccc-----cCCceeeccccCCcCceeee-----cCCceEEEecCCCcceeEEccccCCCch
Confidence 9876 33333222100 0112222 3333444556778999999999877643
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=121.65 Aligned_cols=265 Identities=12% Similarity=0.185 Sum_probs=172.1
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
....|+-++.||+-- .+-.++|.+. .+...+...+.+.|+.+| ++..+|++....-+++||..
T Consensus 137 ytrnGrhlllgGrKG------HlAa~Dw~t~--~L~~Ei~v~Etv~Dv~~L---------Hneq~~AVAQK~y~yvYD~~ 199 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKG------HLAAFDWVTK--KLHFEINVMETVRDVTFL---------HNEQFFAVAQKKYVYVYDNN 199 (545)
T ss_pred ecCCccEEEecCCcc------ceeeeecccc--eeeeeeehhhhhhhhhhh---------cchHHHHhhhhceEEEecCC
Confidence 445677777776532 3677788774 334566667778887665 23445777788888999876
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.++- ..---...|..+.|-|..-.|++++ .|.++-.+...+.+..-...-.|.+.. -.
T Consensus 200 GtEl-------------------HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 200 GTEL-------------------HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred CcEE-------------------eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 6321 0111224677888888888888888 666655554443332211111333333 67
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|...++-+||.+|+|-+|..+.++. +- .+-.|.++|.+|++.++|+++|+.+.|..|+|||++.-..
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP--Lv--------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--- 327 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP--LV--------KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--- 327 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch--HH--------HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---
Confidence 8888999999999999999955542 11 1235889999999999999999999999999999983221
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe-cCCCe-eEEeeecccCCCCCeeEEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD-TEGPT-VLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD-~~~~~-~l~~~~~~~~~~~~V~sl~ 398 (826)
+......-+...+++|.-| .||.|..+ .|.||. ...+. ........+....+|..+.
T Consensus 328 -------------------l~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~ 386 (545)
T KOG1272|consen 328 -------------------LHTYRTPHPASNLSLSQKG-LLALSYGD-HVQIWKDALKGSGHGETPYMNHRCGGPVEDLR 386 (545)
T ss_pred -------------------cceeecCCCcccccccccc-ceeeecCC-eeeeehhhhcCCCCCCcchhhhccCcccccce
Confidence 1111124467889999887 46666555 688994 32211 2111122233456899999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEE
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|.|. .+.|-+|..-|.-.++
T Consensus 387 FcP~------EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 387 FCPY------EDVLGIGHAGGITSIL 406 (545)
T ss_pred eccH------HHeeeccccCCceeEe
Confidence 9997 7778777766643333
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=113.88 Aligned_cols=202 Identities=14% Similarity=0.200 Sum_probs=144.8
Q ss_pred CCCeEEEecCCcEEEeccCCCceee--c-ccccCCccee---eCCCCCEEEEEECC--CcEEEEeCCCCceeeeeecccc
Q 003360 203 GNSFILSSADEDYSLLAKSVPPLLD--F-ETKLKDGSQS---HSKVKNLFITGHSD--GAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 203 ~~~~l~~~~d~~i~~w~~~~~~~~~--~-~~~h~g~V~~---~s~~~~~l~Tgs~D--GtVriWD~s~~~~~~i~~l~~~ 274 (826)
+|..+..-++|.+.+|..+.+.... . .+.--.++.. ......++++|+.. ..++|||+.... +++.-++-
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCC
Confidence 3333333448889999655322111 0 1222233433 33455688889999 899999994432 34554433
Q ss_pred cccccccC-CCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 275 SEKDFSLS-GIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 275 ~~~~~~~h-~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
....+... ...++.+.|-+. ...||+++.-+.||+||.+.+.. ++ ..+-....+|++
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR----------------PV----~~fd~~E~~is~ 252 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR----------------PV----AQFDFLENPISS 252 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc----------------ce----eEeccccCccee
Confidence 22222111 156788999888 88999999999999999984433 21 444455778999
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+...|.|+++.+|..-|.+..||++++.++ .....+..+.|.++...|. .++|++|+-|..|+|+|..+.++
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp~------~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHPT------HPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcCC------CceEEeeccceeEEEeecccchh
Confidence 999999999999999999999999999988 3334677889999999984 79999999999999999998776
Q ss_pred EEe
Q 003360 432 LST 434 (826)
Q Consensus 432 i~~ 434 (826)
+..
T Consensus 325 l~k 327 (412)
T KOG3881|consen 325 LHK 327 (412)
T ss_pred hhh
Confidence 654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-10 Score=121.14 Aligned_cols=163 Identities=16% Similarity=0.192 Sum_probs=119.2
Q ss_pred eCCCCCEEEE--EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFIT--GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~T--gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+.+....++ .+.-|.|-||++..+-. |...... --..+..|+.+.|.| |...||+++.||.|+||.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr-----LPDgv~p-~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR-----LPDGVMP-GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC-----CCccccc-ccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 6666666654 35568999999944332 1111000 112347899999999 5678999999999999999866
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
.... + ..+.- -....|...|++|.|+|- ...||+++.|-+|++||+++.+....+ .+|.+.|
T Consensus 661 gl~e-~---------~~tPe----~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l---~gHtdqI 723 (1012)
T KOG1445|consen 661 GLPE-N---------EMTPE----KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL---VGHTDQI 723 (1012)
T ss_pred CCCc-c---------cCCcc----eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee---ccCcCce
Confidence 3211 0 00010 122234567999999983 457999999999999999998766444 4899999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.++|+| ||+.+++.+.||+|++|+.++++
T Consensus 724 f~~AWSp------dGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 724 FGIAWSP------DGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eEEEECC------CCcceeeeecCceEEEeCCCCCC
Confidence 9999999 59999999999999999998765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=116.26 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 233 KDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
+++|.. |++||++||+.++||.+||+|....++. ..++ ..-+...||+|+||++++++|++|..|.||
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl--g~mk--------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL--GVMK--------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH--HHHH--------hhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 345555 9999999999999999999999665531 1111 112688999999999999999999999999
Q ss_pred EeCCC
Q 003360 311 KLKYE 315 (826)
Q Consensus 311 d~~~~ 315 (826)
.+...
T Consensus 360 Sf~er 364 (636)
T KOG2394|consen 360 SFEER 364 (636)
T ss_pred Eeccc
Confidence 99744
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=103.96 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=153.6
Q ss_pred CCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc
Q 003360 142 KPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 142 ~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~ 220 (826)
..+...+.+..+..++++|.-.. .+ ..+...++..|+..|+++.++|..+.|++++ |.--.+|..
T Consensus 19 n~drt~iAv~~~~~evhiy~~~~-------~~-------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 19 NSDRTQIAVSPNNHEVHIYSMLG-------AD-------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCCCceEEeccCCceEEEEEecC-------CC-------CceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34444556666777998886544 00 1223445789999999999999999999999 888888854
Q ss_pred --CCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc-eeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 221 --SVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL-FLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 221 --~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
+..+..++ ...|.+.+.+ |+|.++.+|+|+.-..|-||-+.... .=.-+.++ ..+...|++++|+|+
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-------kPirStv~sldWhpn 157 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-------KPIRSTVTSLDWHPN 157 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-------CccccceeeeeccCC
Confidence 22222222 2457888888 99999999999999999999884332 10001122 245578999999999
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
+-+|++|+.|+..|+|..--...+... +.++-+.....-. .......+.|..+.|+|+|..|+-.+.|++|.+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekp-----ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKP-----APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCC-----CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 999999999999999975321110000 0000010000000 111133567999999999999999999999999
Q ss_pred EecCCCee-EEeeecccCCCCCeeEEEEee
Q 003360 373 LDTEGPTV-LYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 373 wD~~~~~~-l~~~~~~~~~~~~V~sl~f~~ 401 (826)
-|...+.. +.... ...-|..++.|..
T Consensus 233 ~da~~p~~~v~~~~---~~~lP~ls~~~is 259 (361)
T KOG1523|consen 233 VDAAGPSERVQSVA---TAQLPLLSVSWIS 259 (361)
T ss_pred eecCCCchhccchh---hccCCceeeEeec
Confidence 99988752 21111 2225777787776
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.5e-10 Score=108.67 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=102.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-- 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-- 222 (826)
..++++-.+|++.+||...- ...++.+.. .. .......|..+|..+.|.+....-+.++ +..+..|+...
T Consensus 166 ~lllaGyEsghvv~wd~S~~-~~~~~~~~~----~k--v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTG-DKIIQLPQS----SK--VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred EEEEEeccCCeEEEEEccCC-ceeeccccc----cc--cccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 34566778999999998762 111122211 11 1122357899999999998888777877 66666773221
Q ss_pred --Cceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 223 --PPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 223 --~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
-++... ... .-||.. .-||++++||++.||.||||...... ++..|+ .|.+.|++++|+|+..+
T Consensus 239 gslq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--pLAVLk--------yHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 239 GSLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--PLAVLK--------YHSAGVNAVAFSPDCEL 307 (323)
T ss_pred CcccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCC--chhhhh--------hhhcceeEEEeCCCCch
Confidence 111111 111 223433 88999999999999999999983322 233344 58899999999999999
Q ss_pred EEEEeCCCcEEEEEe
Q 003360 298 LVSGDQSGMVRIFKL 312 (826)
Q Consensus 298 Lasgs~dg~V~iwd~ 312 (826)
+|.++.|+.|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999996
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=117.53 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=148.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCceeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SVPPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~s 261 (826)
|.+|.+-|.|+.|+.+|.+|++|+ |-.+.+|+. ....+..+.++|++.|.+ |-| +.++++||..|..|+++|++
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 689999999999999999999999 778999964 344566667899999999 655 45699999999999999994
Q ss_pred C-CceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 262 C-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 262 ~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
. .....-.-.. ....-+.-|...|..|+-+|++ ..+.++++||+++-||++....-. +++.++..-
T Consensus 126 ~~~~~~~d~~~~-~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~----------p~~~~~~~l- 193 (758)
T KOG1310|consen 126 SSKEGGMDHGME-ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN----------PDEDCPSIL- 193 (758)
T ss_pred cccccccccCcc-chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC----------ccccccHHH-
Confidence 2 1100000000 0011123466788999999998 789999999999999999542110 111110000
Q ss_pred EEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCe------------------eEEeeecccCCC--------C
Q 003360 340 VKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPT------------------VLYQKHIASDIS--------S 392 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~------------------~l~~~~~~~~~~--------~ 392 (826)
+.....--...|+.++|. ..+||+|+.|-.+++||.+... |+..+. .+|. .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDR 271 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCccccccc
Confidence 000001123678888885 4579999999999999954211 110000 0111 1
Q ss_pred C---eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 393 G---IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 393 ~---V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
. .+-+.|+| +|.-|++.-..-.|+++|+..++-...+
T Consensus 272 ~~~~~t~vtfnp------NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 272 YITCCTYVTFNP------NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ceeeeEEEEECC------CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2 34455666 3655665555567999999877754443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=116.33 Aligned_cols=172 Identities=14% Similarity=0.194 Sum_probs=123.5
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~d 304 (826)
.+|+|-|.| |+.+|.+|++|+.|-.+.|||.. .+. +..+. .+|...|.++.|-|. .+++++|..|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---lhsI~-------TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---LHSIS-------TGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce---eeeee-------cccccceeEEeeeccCCCeEEEeccCc
Confidence 789999999 99999999999999999999994 333 23344 578899999999995 4799999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
..|++||+........+ ++.... ..-..-|...|..|+-.|++ ..+-++++||+|+-+|++.+...-.
T Consensus 117 k~i~lfdl~~~~~~~~d---------~~~~~~--~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMD---------HGMEET--TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred ceEEEEecccccccccc---------cCccch--hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99999999843211000 110000 01123345668888888988 6788999999999999997643200
Q ss_pred -eec------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 384 -KHI------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 384 -~~~------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+ ....--...++..+|. +..+|++|++|--.++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhh
Confidence 000 0011123456677775 57899999999999999954
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-10 Score=118.40 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=149.8
Q ss_pred EEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc
Q 003360 196 TAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
..+.|+.+|++++.++ .|.+..++.....+. ++......|.+ |-.+.+++|++ +..-+.|||-.+.++-+ ++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHC---lk 207 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-FEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHC---LK 207 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceee-eeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEee---hh
Confidence 4578999999999998 888888765543322 22233344444 66666777765 55689999998777533 33
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
....|..+.|-|.--+|++++..|.++.-|+..+... ..+..-.+.+..|
T Consensus 208 ---------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV---------------------a~~~t~~G~~~vm 257 (545)
T KOG1272|consen 208 ---------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV---------------------ASIRTGAGRTDVM 257 (545)
T ss_pred ---------hcCchhhhcccchhheeeecccCCceEEEeechhhhh---------------------HHHHccCCccchh
Confidence 1258999999999999999999999999999866432 1111225678888
Q ss_pred EEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 353 NMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 353 ~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+-+|-...+-+|...|+|.+|.....+.+..+- .|.++|.+|++.+ +|.++++.+.|..++|||+++-..+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~------~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDR------GGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECC------CCcEEeecccccceeEeeecccccc
Confidence 999988889999999999999999888773332 5888999999999 5999999999999999999977666
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
.++
T Consensus 329 ~t~ 331 (545)
T KOG1272|consen 329 HTY 331 (545)
T ss_pred cee
Confidence 554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-08 Score=100.90 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=114.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCcc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~ 319 (826)
+.+.|+++=++. |.|||+..-. ++.++.. ...+...+.++++++.+.+||-- ...|.|.|||..+-.
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~Mk--lLhTI~t-----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--- 164 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMK--LLHTIET-----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--- 164 (391)
T ss_pred ccceEEEEEccc-EEEEecccce--eehhhhc-----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---
Confidence 445677766654 9999995544 2344431 12344678888888888888863 346899999987321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
++ .....|.+++-||+|+++|.+||++|+.|+ |||+++..++.++.++-.. ....|.+++
T Consensus 165 --------------~v----~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~ 225 (391)
T KOG2110|consen 165 --------------PV----NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLS 225 (391)
T ss_pred --------------ee----eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEE
Confidence 11 334478999999999999999999999998 6999999999998876321 255688999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
|++ |+++|.+.++.++|+||.+..
T Consensus 226 Fs~------ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSP------DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECC------CCCeEEEecCCCeEEEEEecc
Confidence 999 699999999999999999874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-08 Score=100.35 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
.+|.+++|+|++..||+. ..++.|.+||++... +.. ....++..+.|||+|++|
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-----------------------i~~-~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-----------------------IFS-FGTQPRNTISWSPDGRFL 115 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-----------------------eEe-ecCCCceEEEECCCCCEE
Confidence 579999999999987654 467799999996111 111 125678899999999999
Q ss_pred EEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECCCCceE
Q 003360 362 AVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDNGNML 432 (826)
Q Consensus 362 asGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~tg~~i 432 (826)
++|+. .|.|.+||.++.+.+.... ...++.++|+| ||+++++++. |..++||+.. |+.+
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP------dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP------DGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC------CCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 99864 4779999999888884432 23478999999 6999998875 7789999986 8877
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
...
T Consensus 184 ~~~ 186 (194)
T PF08662_consen 184 YKK 186 (194)
T ss_pred Eec
Confidence 653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-08 Score=104.47 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=113.9
Q ss_pred CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+.-.+++.|+.+ .|.=.++ .+..+.+ +......++++..++...+|++|+.+|.|..||.+......
T Consensus 144 ~scDly~~gsg~-evYRlNLEqGrfL~P-----------~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 144 PSCDLYLVGSGS-EVYRLNLEQGRFLNP-----------FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred CCccEEEeecCc-ceEEEEccccccccc-----------cccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 344566665544 5666677 5555322 23344789999999999999999999999999998653321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
...+. .+-+. .........|+++.|+.+|-.+++|+.+|.|.|||++..+.++... ++...+|..+.|
T Consensus 212 ~l~~~---~~v~s-------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h~~e~pi~~l~~ 279 (703)
T KOG2321|consen 212 TLDAA---SSVNS-------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--HGYELPIKKLDW 279 (703)
T ss_pred eeecc---cccCC-------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc--cCCccceeeecc
Confidence 00000 00000 0000112349999999999999999999999999999999885444 567789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.+. +++--++......++|||..+|+....
T Consensus 280 ~~~-----~~q~~v~S~Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 280 QDT-----DQQNKVVSMDKRILKIWDECTGKPMAS 309 (703)
T ss_pred ccc-----CCCceEEecchHHhhhcccccCCceee
Confidence 874 233333334455789999999998776
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=123.18 Aligned_cols=157 Identities=12% Similarity=0.206 Sum_probs=116.6
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
.+|...|.| |...|.+++||+.|..|+||....... ...+.+|...|+.++.+.+..++++++.|..|
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~----------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC----------LASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhh----------hccCCCCccccchhccchhhhhhhhcccCceE
Confidence 579999999 999999999999999999999843331 22345899999999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
++|.+..+. .+ .....|.+.||+|+|+|-- +.+.||++++||.+--..+|.-...
T Consensus 257 rvWrl~~~~-----------------pv----svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 257 RVWRLPDGA-----------------PV----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred EEEecCCCc-----------------hH----HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC
Confidence 999998432 21 2345678999999999864 6789999999999822222221111
Q ss_pred -cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 388 -SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 388 -~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.....-+.++.|.. .+.-..+|+.|+.-..|...
T Consensus 312 ~~~~~~~~~s~~~~~------~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFEN------NGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred Ccccccceeeeeccc------cccccccccCCcccccchhh
Confidence 11123455566655 36677888888877666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=100.80 Aligned_cols=151 Identities=16% Similarity=0.299 Sum_probs=99.6
Q ss_pred EEEEeeCCCeEEEec----CC-------cEEEe--ccCCCceeecccccCCccee--eCCCCCEEEE--EECCCcEEEEe
Q 003360 197 AMKLITGNSFILSSA----DE-------DYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFIT--GHSDGAINFWD 259 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~----d~-------~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~T--gs~DGtVriWD 259 (826)
.+.|++.|.+|+.-. |. ...+| +..............+.|.+ |+|+++.+++ |..++.|.|||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 345677777766521 11 13333 22222333333334556877 9999997654 45678999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
..+.. +..+ +...+..|.|+|+|++|++|+. .|.|.+||.+....
T Consensus 90 ~~~~~---i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~------------------- 137 (194)
T PF08662_consen 90 VKGKK---IFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK------------------- 137 (194)
T ss_pred CcccE---eEee----------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-------------------
Confidence 96443 2222 2357789999999999999875 46799999983221
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEec------CCeEEEEecCCCeeEEee
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSD------QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~ 384 (826)
+.... ...++.++|+|+|++++++.. |..++||+. +|+.++..
T Consensus 138 ---i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 138 ---ISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ---eeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 22222 334789999999999998874 678899999 46666443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-09 Score=108.94 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=104.8
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
.+.+|..+|..|+||+.||++|||+. +.... +. ...|...|.+|.|+||+..|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----l~------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----LE------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-----hh------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 44458999999999999999999997 33331 11 23577899999999999999999999 89999999
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----CEEEEEecCCeEEEEecCCC---eeEEeee
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----QHLAVGSDQGYVYLLDTEGP---TVLYQKH 385 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----~~lasGs~dG~V~vwD~~~~---~~l~~~~ 385 (826)
.+........ +++ +-....+.|+.|+ ...+.-..-+.|+.||+... ..+...+
T Consensus 216 ~g~~~a~~t~----~~k---------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 216 TGAALARKTP----FSK---------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred cCchhhhcCC----ccc---------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 7622110000 000 1112334444443 22233333445555554321 1221111
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
. ......|++++.+. ||.+++.|+.||.|.|++..+-+++.-
T Consensus 277 ~-~~~~~siSsl~VS~------dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 277 K-IKRFKSISSLAVSD------DGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred h-hhccCcceeEEEcC------CCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 1 12234788999998 699999999999999999987666544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-07 Score=96.10 Aligned_cols=210 Identities=14% Similarity=0.210 Sum_probs=134.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceee-c-ccccCCccee---eCCCCCEEEEEECC------CcEEEEeCCCC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLD-F-ETKLKDGSQS---HSKVKNLFITGHSD------GAINFWDVSCP 263 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~-~-~~~h~g~V~~---~s~~~~~l~Tgs~D------GtVriWD~s~~ 263 (826)
...++|+.|...++.|.|.-+++|+-.- +.. . ...+.+|+.- .....-+.++|+.+ ..|-|||-...
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 4448999999999999877788886431 111 1 1223444221 12222233445443 57999995222
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC--------ccccceEE---------E
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH--------AIENSFLS---------F 326 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~--------~~~~~~~~---------i 326 (826)
. ++.++. -..+|.+|.+.++ .+++. -...|.||.+..+.. ..++.+-. +
T Consensus 86 ~--~i~el~---------f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 86 R--CIIELS---------FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred c--EEEEEE---------eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 2 223333 1268999999876 34444 456799999885511 11111111 1
Q ss_pred ee--cCCCCeEEEEE---------EEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCe
Q 003360 327 TG--SKKGNSHIIHS---------VKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 327 ~~--s~~~~~~~~~~---------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
.+ .+.| ++.+.. .....|.+.|.|++.+-+|.+||++|..|+ |||||..+++.++.++- .-....|
T Consensus 152 afPg~k~G-qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-G~d~A~i 229 (346)
T KOG2111|consen 152 AFPGFKTG-QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-GVDRADI 229 (346)
T ss_pred EcCCCccc-eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-CCchheE
Confidence 11 1122 111111 223456888999999999999999999998 79999999999976652 1235679
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+++|+| ++.+|+++|.-|+|.|+.++.
T Consensus 230 y~iaFSp------~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSP------NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCC------CccEEEEEcCCCeEEEEEeec
Confidence 9999999 599999999999999999874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-07 Score=103.52 Aligned_cols=204 Identities=7% Similarity=0.044 Sum_probs=125.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEE-ECCCc--EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITG-HSDGA--INFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tg-s~DGt--VriW 258 (826)
+..+...+...+|+|||+.++..+ +..+.+|+........+ ....+.+.+ |+|+|+.|+.. ..+|. |.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 345666889999999999988643 23466665443332222 122233333 99999977754 55654 8888
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|+.+..... +. .+...+....|+|+++.|+..+. +|...||.+.... +..
T Consensus 273 d~~tg~~~~---lt--------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~---------------g~~--- 323 (429)
T PRK03629 273 DLASGQIRQ---VT--------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING---------------GAP--- 323 (429)
T ss_pred ECCCCCEEE---cc--------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC---------------CCe---
Confidence 985544211 21 12245678999999998876665 4566677554211 111
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.+.......+.+..|+|+|++++..+.+ ..|.+||+.++...... ... ...+..|+| |+..|+.
T Consensus 324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~--~~~~p~~Sp------DG~~i~~ 390 (429)
T PRK03629 324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTF--LDETPSIAP------NGTMVIY 390 (429)
T ss_pred --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC---CCC--CCCCceECC------CCCEEEE
Confidence 1111122345678999999999876643 35889999887644211 111 123466777 7999998
Q ss_pred EECCCc---EEEEECCCCceEEee
Q 003360 415 ATKDSS---VLVLDSDNGNMLSTN 435 (826)
Q Consensus 415 gs~Dg~---V~iwd~~tg~~i~~~ 435 (826)
++.++. +.++++. |+....+
T Consensus 391 ~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred EEcCCCceEEEEEECC-CCCeEEC
Confidence 888764 6777875 6555444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-07 Score=105.06 Aligned_cols=199 Identities=11% Similarity=0.004 Sum_probs=124.8
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCc--EEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGA--INF 257 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGt--Vri 257 (826)
.+..|...+...+|+|||+.++..+ +..+.+|+........+ ..+.+.+.+ |+|+|+.|+ +.+.+|. |.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 3567778899999999999988765 34577787654443333 334555545 999998664 6677776 556
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCC--cEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
||+.+..... +. .+....+..+|+|+++.|+..+ .+| .|.+||+..+..
T Consensus 275 ~d~~~~~~~~---Lt--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----------------- 326 (435)
T PRK05137 275 MDLRSGTTTR---LT--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----------------- 326 (435)
T ss_pred EECCCCceEE---cc--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----------------
Confidence 6775544211 21 2334466789999999888766 344 455556542211
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.+.....+.+....|+|+|+.|+....+ ..|.+||+.++.... .. .. ..+....|+| |++.
T Consensus 327 -----~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt--~~--~~~~~p~~sp------DG~~ 390 (435)
T PRK05137 327 -----RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT--SG--FLVEGPTWAP------NGRV 390 (435)
T ss_pred -----EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-cc--CC--CCCCCCeECC------CCCE
Confidence 1111123456778899999999887653 368889986554321 11 11 2356678888 6887
Q ss_pred EEEEECC------CcEEEEECCCCc
Q 003360 412 LVIATKD------SSVLVLDSDNGN 430 (826)
Q Consensus 412 l~sgs~D------g~V~iwd~~tg~ 430 (826)
|+..+.+ ..++++|+.++.
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCc
Confidence 7665543 257888876443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-07 Score=92.60 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=136.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
-++| -+|+.+.+.+||..+++++ |..|.+|+........+.+.--||+.- |+||+.+|.++.-|+..++|+-...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3555 6899999999999999988 778999987765555554445667755 9999999999999999999965211
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCeEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~~~~~~ 339 (826)
-. +.+ .+ .....|+.-+|+|+|+.|+-.. .|.=++|.+.-..... ...++.+..--|-..+.+.
T Consensus 271 wt----~er-----w~-lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~- 338 (445)
T KOG2139|consen 271 WT----KER-----WI-LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTIC- 338 (445)
T ss_pred ce----ecc-----ee-ccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhh-
Confidence 10 011 11 1224899999999998765442 2344666664321110 0011110000000000000
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCe--------EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGY--------VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~--------V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.-.....+.+.+|+|.|.|.++|+-...+. |.+||.+..-++.-..+......+..-+.|.+.. .++.+
T Consensus 339 ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~---n~g~l 415 (445)
T KOG2139|consen 339 AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK---NEGRL 415 (445)
T ss_pred cCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc---cCCcE
Confidence 000112567999999999999999876544 6778876554442222211122335667888852 24777
Q ss_pred EEEEECCCcEEEEECC
Q 003360 412 LVIATKDSSVLVLDSD 427 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~ 427 (826)
|.++=+.|.+.-|++.
T Consensus 416 LsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEeccCceEeeeeE
Confidence 7777777777666654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-06 Score=100.59 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=112.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
-++..++-.|+|++|+...- ..|..+.+|++.|..+.++.+|+++++.+ |.++|+|......
T Consensus 146 ~~i~~gsv~~~iivW~~~~d-----------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHED-----------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE 208 (967)
T ss_pred EEEEeccccccEEEEecccc-----------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc
Confidence 34455666789999987631 12235789999999999999999999999 9999999655444
Q ss_pred eee-cccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEE
Q 003360 225 LLD-FETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVS 300 (826)
Q Consensus 225 ~~~-~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Las 300 (826)
... ..++|+..|+. ++++ .|+|++.|-+.|+|+..+.++. .+..|. ..|+.++..+...+.++
T Consensus 209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-----------~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-----------VYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred ccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-----------hhhhhhhcceeEEEEcCCceEEEe
Confidence 333 35899999998 8887 9999999999999988776632 123454 78999999999999999
Q ss_pred EeCCCcEEEEEeCCC
Q 003360 301 GDQSGMVRIFKLKYE 315 (826)
Q Consensus 301 gs~dg~V~iwd~~~~ 315 (826)
++.||.+++|++...
T Consensus 276 ~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNGR 290 (967)
T ss_pred eccCcchhhhhhhcc
Confidence 999999999998654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=106.45 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=109.4
Q ss_pred CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 213 EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
..+.+|+........+ ..|.+.+.+ |+|+|+.|+..+.+ ..|++||+.+.....+..+. . ...
T Consensus 184 ~~i~i~d~dg~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--------g---~~~ 251 (429)
T PRK01742 184 YEVRVADYDGFNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--------G---HNG 251 (429)
T ss_pred EEEEEECCCCCCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------C---ccC
Confidence 4677776544333333 456666766 99999999887654 36999999544322221111 1 234
Q ss_pred EEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-
Q 003360 288 ALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS- 365 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs- 365 (826)
.++|+|+++.|+.++ .+|.+.||.+.... +.. .+...+...+.+.+|+|+|+.++..+
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---------------~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANG---------------GTP-----SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCC---------------CCe-----EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 689999999888764 68887777654211 111 11222345578899999999877665
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.+|...||++......... . .+.. .+..|+| |+.+|++.+.++ +.+||+.+|+..
T Consensus 312 ~~g~~~I~~~~~~~~~~~~-l--~~~~--~~~~~Sp------DG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASL-V--GGRG--YSAQISA------DGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred CCCCceEEEEECCCCCeEE-e--cCCC--CCccCCC------CCCEEEEEcCCC-EEEEECCCCCeE
Confidence 5788888876432211111 1 1121 3456777 688888887765 556999888654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=105.25 Aligned_cols=234 Identities=14% Similarity=0.198 Sum_probs=159.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-CCceeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-VPPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~ 260 (826)
.|..|.+.|..+.|+..|..+++++ |..+.+|+.. ......|..+|...|.. |-| +..-|++++.||.||+=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 4688999999999999999999999 8899999653 34566677889888877 544 3457999999999998777
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCc--------ccc---ceEEEe
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHA--------IEN---SFLSFT 327 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~--------~~~---~~~~i~ 327 (826)
..+.. .. ...+..|.++|..++.-|++ ..|.+++.|+.|.=+|++.+... .+. .+..++
T Consensus 217 ~~t~~~-----e~---t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 217 LETGYV-----EN---TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ccccce-----ec---ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 22221 11 22234688999999999987 46899999999999999876221 111 122222
Q ss_pred ecCCCC-e---------------EEEEE-------EEEe------eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 328 GSKKGN-S---------------HIIHS-------VKVM------KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 328 ~s~~~~-~---------------~~~~~-------~~~~------~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
..+... . ..++. -++. .....|+|++|+.++.-+.+.+.|-.|+++.-.-+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 211110 0 00000 0111 11345999999988888888888888999954322
Q ss_pred ee----------EEeeecccCC--CCCeeEEEE-eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 379 TV----------LYQKHIASDI--SSGIVSLQF-ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 379 ~~----------l~~~~~~~~~--~~~V~sl~f-~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.- .+......+| ...|..+.| .| ...++++|+.-|.|.||+-.+++.+.-
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP------rsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP------RSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccC------ccceEEecCccceEEEEecchhHHHHH
Confidence 11 1222223444 345777875 34 488999999999999999999887754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-07 Score=92.99 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=111.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC----ceeecccc-----cCCccee--eCCCC-CEEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP----PLLDFETK-----LKDGSQS--HSKVK-NLFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~----~~~~~~~~-----h~g~V~~--~s~~~-~~l~Tgs~DGtVr 256 (826)
..|.-.|..++++.|+..++++.|-.|.+|+.... .+... .| .+.-|++ |||.. ++++-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 46777899999999999999999999999964321 11222 22 2333455 99865 4778888999999
Q ss_pred EEeCCCCce--eeeeecccccccc-----cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 257 FWDVSCPLF--LLILSLKQQSEKD-----FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 257 iWD~s~~~~--~~i~~l~~~~~~~-----~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
+-|+....+ .. .++-.+.+.. |..--..|..+.|++.|+++++-+. -+|++||+...... +..
T Consensus 240 LcDmR~~aLCd~h-sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p----v~t---- 309 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP----VET---- 309 (433)
T ss_pred Eeechhhhhhcch-hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc----ceE----
Confidence 999943221 00 0111011111 1111168999999999999987643 48999999754221 111
Q ss_pred CCCCeEEEEE-EEE--ee--ccC---CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 330 KKGNSHIIHS-VKV--MK--ING---SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 330 ~~~~~~~~~~-~~~--~~--~~~---~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
..+|. ++. .. -+. .=.-++|+.++.++++|+....+++++...+...
T Consensus 310 -----~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 310 -----YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred -----EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 00110 000 00 011 1245789999999999999999999997666544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-07 Score=102.48 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=123.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--C--CcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++..+ + ..+.+|+........+ ..+.+...+ |+|+|+.|+ +.+.+| .|.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 456677889999999999998865 2 2466776544333222 223333333 999998664 556666 48889
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEe--CCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKL--KYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~--~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+.......+|+|+++.|+.++ .+|...||.+ .++.. ..
T Consensus 278 d~~~g~~~~---lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~---------- 330 (433)
T PRK04922 278 DLGSRQLTR---LT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ER---------- 330 (433)
T ss_pred ECCCCCeEE---Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EE----------
Confidence 985554211 21 2223456789999999888765 4566555544 32211 00
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+. .........+|+|+|+.++..+.++ .|.+||+.++.... +..+ .......|++ |+..|
T Consensus 331 ----lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~---Lt~~--~~~~~p~~sp------dG~~i 393 (433)
T PRK04922 331 ----LT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT---LTPG--SLDESPSFAP------NGSMV 393 (433)
T ss_pred ----ee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE---CCCC--CCCCCceECC------CCCEE
Confidence 11 1122345689999999998876543 69999998776541 1111 1234567887 68877
Q ss_pred EEEECC---CcEEEEECCCCceEE
Q 003360 413 VIATKD---SSVLVLDSDNGNMLS 433 (826)
Q Consensus 413 ~sgs~D---g~V~iwd~~tg~~i~ 433 (826)
+..+.+ +.|.+++.. |....
T Consensus 394 ~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 394 LYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred EEEEecCCceEEEEEECC-CCceE
Confidence 766653 357888886 44433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.5e-07 Score=90.53 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=165.9
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCcee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLL 226 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~ 226 (826)
.+....+.+.+|+..+- +..-.+.-....+..++++|+|+.++..+ +-.|.+|...+....
T Consensus 65 C~~yk~~~vqvwsl~Qp-----------------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQP-----------------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred eeeeccceEEEEEeecc-----------------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 45556778888988761 13344566667899999999998887755 888999965432222
Q ss_pred ecccccCCcce--eeCCCCCEEEEEECC------------------------------------CcEEEEeC--CCCcee
Q 003360 227 DFETKLKDGSQ--SHSKVKNLFITGHSD------------------------------------GAINFWDV--SCPLFL 266 (826)
Q Consensus 227 ~~~~~h~g~V~--~~s~~~~~l~Tgs~D------------------------------------GtVriWD~--s~~~~~ 266 (826)
-..++ +.++. +|+++|++.+.++.- ..+-+||. ....
T Consensus 128 ~~~~p-K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-- 204 (447)
T KOG4497|consen 128 LLPHP-KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-- 204 (447)
T ss_pred Eeccc-ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--
Confidence 22222 22222 288888887776632 22334443 1111
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC----CCccccc--------------------
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE----PHAIENS-------------------- 322 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~----~~~~~~~-------------------- 322 (826)
+.+ .-+-.+..++|+|-+++|++|+.|+.+|+-+--+- +..|..+
T Consensus 205 ----~aY-------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 205 ----YAY-------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ----eee-------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 000 01257889999999999999999999998553321 1111110
Q ss_pred eEEEeecCCCC-----------------eEEEEEEE--E--eeccCCeEEEEEccCCCEEEEEecC--CeEEEEecCCCe
Q 003360 323 FLSFTGSKKGN-----------------SHIIHSVK--V--MKINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTEGPT 379 (826)
Q Consensus 323 ~~~i~~s~~~~-----------------~~~~~~~~--~--~~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~~~~ 379 (826)
..++++.+... ...+|.++ . ......+--++||+|..++|+-.+. ..+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 11222221110 11111111 0 0113348889999999988886543 568999998765
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
+-.. -....+|....|.|. ...|++++....+++|......+++ .+.. + +.++-+
T Consensus 354 l~av----LiQk~piraf~WdP~------~prL~vctg~srLY~W~psg~~~V~----vP~~-G--F~i~~l-------- 408 (447)
T KOG4497|consen 354 LHAV----LIQKHPIRAFEWDPG------RPRLVVCTGKSRLYFWAPSGPRVVG----VPKK-G--FNIQKL-------- 408 (447)
T ss_pred hhhh----hhhccceeEEEeCCC------CceEEEEcCCceEEEEcCCCceEEe----cCCC-C--ceeeeE--------
Confidence 4311 123458999999994 6788888888899999988433332 2222 2 333333
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|...+.++++|+++..-+--++
T Consensus 409 -----------------~W~~~g~~i~l~~kDafc~a~ve 431 (447)
T KOG4497|consen 409 -----------------QWLQPGEFIVLCGKDAFCVAIVE 431 (447)
T ss_pred -----------------EecCCCcEEEEEcCCceEEEEec
Confidence 34455678888888765554333
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=99.34 Aligned_cols=209 Identities=13% Similarity=0.188 Sum_probs=133.6
Q ss_pred EEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 198 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
++|+|+|+++++.++-.+.+-+..+-++.....-...-+.- |..+.. +|...+.|+.|.+|++..++.. +++
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~--ckI---- 87 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY--CKI---- 87 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE--EEe----
Confidence 67999999999988555444444332222110000111111 666655 4556689999999999776631 222
Q ss_pred ccccccCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCeEEEEE-----------
Q 003360 276 EKDFSLSGIPLTALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNSHIIHS----------- 339 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~~~~~~----------- 339 (826)
+...+++.+++|+|+|+. |.+...+-.|.+|.+.+....+ ...+..++++++|..+.+-.
T Consensus 88 ----deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 88 ----DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred ----ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 233478999999999965 5566678899999998774321 12346677888886544322
Q ss_pred -------EEEeec-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 340 -------VKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 340 -------~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
++.... .-..+.+.|+|||..+| |||.--...++.. ..+-.+..++|+|+ +++
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY----e~~lG~k~v~wsP~------~qf 224 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY----ERGLGLKFVEWSPC------NQF 224 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee----eeccceeEEEeccc------cce
Confidence 111111 33578899999998665 5664322222211 22346888999996 999
Q ss_pred EEEEECCCcEEEEECCCCceEEee
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
|++|+.|+.++|.+--+-+.+..+
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhh
Confidence 999999999999988776665554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-07 Score=91.98 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=131.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~ 265 (826)
+.+..+..+++++.--.++.+. |.+|++|+.+......++......|.| |-|.+. -|+.|.. +-|.||..+....
T Consensus 96 ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhhcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 4455677888888666667777 999999987764444444556677888 777654 5666665 4689999843321
Q ss_pred ee-----eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 266 LL-----ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 266 ~~-----i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.- +.....+ +..-.+| .+|++|.|.+|+..|++++.+ ..|.|||..++....
T Consensus 175 ~~r~~~~~s~~~~q-vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-------------------- 232 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQ-VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-------------------- 232 (445)
T ss_pred cccccccccccchh-heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------------------
Confidence 00 0001101 1111233 799999999999999998874 589999998665421
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE-EEEEEC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF-LVIATK 417 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~-l~sgs~ 417 (826)
++ ....+.++-|.|||||.++..++-|+..++|... +.+.. .+.- .++.|..-+|+|+ |.+ |++++.
T Consensus 233 L~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~l-gsgrvqtacWspc------GsfLLf~~sg 301 (445)
T KOG2139|consen 233 LI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWIL-GSGRVQTACWSPC------GSFLLFACSG 301 (445)
T ss_pred cc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec---ceec-cCCceeeeeecCC------CCEEEEEEcC
Confidence 11 1224568999999999999999999999999543 33333 2211 2338889999995 554 445554
Q ss_pred CCcEE
Q 003360 418 DSSVL 422 (826)
Q Consensus 418 Dg~V~ 422 (826)
...++
T Consensus 302 sp~ly 306 (445)
T KOG2139|consen 302 SPRLY 306 (445)
T ss_pred CceEE
Confidence 44443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=98.48 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=124.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCcEEEEeC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDV 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~ 260 (826)
+..+...+...+|+|+++.++..+ ++ .+.+|+........+ ....+.+.+ |+|+|+.|+ +...||..+||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 445667888999999999998765 23 366676544333322 222333434 999998776 5678898888875
Q ss_pred --CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 --SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 --s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+... ..+. .+...+....|+||++.|+..+ .+|...||.+..... ....
T Consensus 270 d~~~~~~---~~lt--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---------------~~~~- 322 (427)
T PRK02889 270 NADGSGL---RRLT--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---------------AAQR- 322 (427)
T ss_pred ECCCCCc---EECC--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---------------ceEE-
Confidence 33332 1121 2333456778999999887655 457788887752111 1100
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+. .........+|+|+|++|+..+.++ .|.+||+.++...... .. .......|+| |+..|+.
T Consensus 323 --lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~--~~~~~p~~sp------dg~~l~~ 387 (427)
T PRK02889 323 --VT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT---DT--TRDESPSFAP------NGRYILY 387 (427)
T ss_pred --Ee--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc---CC--CCccCceECC------CCCEEEE
Confidence 11 1122244678999999999877654 6999999887654211 11 2235578888 6888877
Q ss_pred EECCC---cEEEEECCCCceEE
Q 003360 415 ATKDS---SVLVLDSDNGNMLS 433 (826)
Q Consensus 415 gs~Dg---~V~iwd~~tg~~i~ 433 (826)
.+.++ .+.+.+.. |+...
T Consensus 388 ~~~~~g~~~l~~~~~~-g~~~~ 408 (427)
T PRK02889 388 ATQQGGRSVLAAVSSD-GRIKQ 408 (427)
T ss_pred EEecCCCEEEEEEECC-CCceE
Confidence 77554 35555653 54433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.3e-05 Score=92.92 Aligned_cols=241 Identities=14% Similarity=0.136 Sum_probs=148.6
Q ss_pred CceeeEEEecCCCCCCCCCCceEEEeccCccEEEe----cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEe
Q 003360 126 EPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF----DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI 201 (826)
Q Consensus 126 ~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~----d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs 201 (826)
+.++.|..++.. ..+++++..|.|.++ |... ...-.+...+..|.+++||
T Consensus 76 ~~ivs~~yl~d~--------~~l~~~~~~Gdi~~~~~~~~~~~------------------~~~E~VG~vd~GI~a~~WS 129 (928)
T PF04762_consen 76 DKIVSFQYLADS--------ESLCIALASGDIILVREDPDPDE------------------DEIEIVGSVDSGILAASWS 129 (928)
T ss_pred CcEEEEEeccCC--------CcEEEEECCceEEEEEccCCCCC------------------ceeEEEEEEcCcEEEEEEC
Confidence 456666666443 668899999999998 3332 1122245677899999999
Q ss_pred eCCCeEEEec-CCcEEEeccCC---------------Cceeecccc--------------------------------cC
Q 003360 202 TGNSFILSSA-DEDYSLLAKSV---------------PPLLDFETK--------------------------------LK 233 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~---------------~~~~~~~~~--------------------------------h~ 233 (826)
||...++... ++.+.+..... .......|| +.
T Consensus 130 PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 9999999876 77766552110 011111111 00
Q ss_pred -Cccee-eCCCCCEEEEEEC---C---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC--
Q 003360 234 -DGSQS-HSKVKNLFITGHS---D---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-- 303 (826)
Q Consensus 234 -g~V~~-~s~~~~~l~Tgs~---D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-- 303 (826)
+.+.- |-.||.++|+.+- + ..+|||+-.+... . .-+ ... +--.+++|.|.|.++|+.-.
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~-s--tSE--~v~------gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQ-S--TSE--PVD------GLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEE-e--ccc--cCC------CccCCccCCCCCCEEEEEEEcC
Confidence 11111 8899999998875 3 4789999764431 1 111 011 12347899999999998765
Q ss_pred -CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 304 -SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 304 -dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
...|.+|.-+ |-.|.-..+++......|..|+|++++..||+-..|. |.+|-..+..-..
T Consensus 279 ~~~~VvFfErN------------------GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 279 DRHDVVFFERN------------------GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CCcEEEEEecC------------------CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 2345555432 2111100022323355699999999999999988776 9999987766443
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...+.......+..+.|+|- +...|.+.+.+|.+..++..
T Consensus 340 Kqei~~~~~~~~~~~~Wdpe-----~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKWDPE-----KPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEccCCCCCCceEECCC-----CCCEEEEEecCCcEEEEEEE
Confidence 33333233444555889885 46678888877777666543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-05 Score=88.83 Aligned_cols=329 Identities=11% Similarity=0.094 Sum_probs=171.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++....|++.++|..+. +..-.++.....-..+.|++|++++++++ |+.+.+++......
T Consensus 8 ~~V~~~~~~~v~viD~~t~-----------------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN-----------------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEEecCCCEEEEEECCCC-----------------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 3455667899999998762 12233444433334467899999999988 99999998765444
Q ss_pred eecccccCCccee--eCCCCCEEEEE-ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITG-HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tg-s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
... ........+ ++++|++++++ ..++.|.++|....+ ++..+...... .......|.+|..+|....+++.-
T Consensus 71 v~~-i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~-~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VAT-IKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMP-VDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEE-EE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE--TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEE-EecCCCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeeccccccc-ccccCCCceeEEecCCCCEEEEEE
Confidence 322 111111122 89999988766 578999999984433 23333311000 011335788898899998777776
Q ss_pred CC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCee
Q 003360 303 QS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTV 380 (826)
Q Consensus 303 ~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~ 380 (826)
.| +.|.+-|+.... ... .+............|+|++++++++ ..+..|.++|..+++.
T Consensus 147 kd~~~I~vVdy~d~~-----------------~~~---~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPK-----------------NLK---VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp TTTTEEEEEETTTSS-----------------CEE---EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred ccCCeEEEEEecccc-----------------ccc---eeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 65 777777766321 111 2333334456788999999987664 5677999999999987
Q ss_pred EEeeecc-cCCCCCeeEEEEeec----ccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCC
Q 003360 381 LYQKHIA-SDISSGIVSLQFETC----SLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQD 455 (826)
Q Consensus 381 l~~~~~~-~~~~~~V~sl~f~~~----~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~ 455 (826)
+...... ..|..++..+- +|. ......+...++.-....+.+||..+.+.+.++... +..+.+.
T Consensus 207 v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~----G~glFi~------ 275 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ----GGGLFIK------ 275 (369)
T ss_dssp EEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S----SSS--EE------
T ss_pred EEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC----CCcceee------
Confidence 7544331 11333333221 110 000001122222222234566777777777775332 1112221
Q ss_pred CcccCccccccccccCCCCCCCCCCCCCEEEEe----e-cCcEEEEeccccccccceeeeeeecCCCCc--eeeEeeee-
Q 003360 456 GLARGANLSNVAGMNKGSPKENAVPKQWFVLLC----S-EKAACAYSLSHAVQGVKKVLYKKKFHSSSC--CWASTFYS- 527 (826)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~----s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c--~~~~~~~~- 527 (826)
.+|+..++.+. . ++.|.|++..+. +.+..... ... ..-..+..
T Consensus 276 ----------------------thP~s~~vwvd~~~~~~~~~v~viD~~tl-----~~~~~i~~--~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 276 ----------------------THPDSRYVWVDTFLNPDADTVQVIDKKTL-----KVVKTITP--GPGKRVVHMEFNPD 326 (369)
T ss_dssp ------------------------TT-SEEEEE-TT-SSHT-EEEEECCGT-----EEEE-HHH--HHT--EEEEEE-TT
T ss_pred ----------------------cCCCCccEEeeccCCCCCceEEEEECcCc-----ceeEEEec--cCCCcEeccEECCC
Confidence 24455566666 2 358999998732 23322211 011 11112222
Q ss_pred CCceEEEEEEeeceEEEeccCCccccccc
Q 003360 528 GSDVGLMLLFTSGKFEIRSLPELSLLKET 556 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~slP~L~~l~~~ 556 (826)
+....+.+...+|.|.|+.-..|+++..+
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 44445555555569999999999998884
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.4e-08 Score=102.11 Aligned_cols=308 Identities=13% Similarity=0.122 Sum_probs=180.1
Q ss_pred CcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceee---EEEecCCCCCCCCCCce
Q 003360 71 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCID---MEIISSSSDPNKPKQDS 147 (826)
Q Consensus 71 ~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d---~~~l~~~~~~~~~~~~~ 147 (826)
+...|-.|++.. .|.+++.|+++. +++.++|......+.+. .+++.. ..++|.+ ++..
T Consensus 141 H~GcVntV~FN~----~Gd~l~SgSDD~------~vv~WdW~~~~~~l~f~---SGH~~NvfQaKFiP~s------~d~t 201 (559)
T KOG1334|consen 141 HKGCVNTVHFNQ----RGDVLASGSDDL------QVVVWDWVSGSPKLSFE---SGHCNNVFQAKFIPFS------GDRT 201 (559)
T ss_pred CCCccceeeecc----cCceeeccCccc------eEEeehhhccCcccccc---cccccchhhhhccCCC------CCcC
Confidence 444566665544 677888888754 78888888765443322 122221 1133322 2344
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC--CC
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS--VP 223 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~--~~ 223 (826)
++..+.+|++.+-..-. +--.+....+..|..+|..++.-|+.++-+ +++ |+.+.-.+.. .+
T Consensus 202 i~~~s~dgqvr~s~i~~--------------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILE--------------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ceeccccCceeeeeecc--------------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 56667778877632211 111222345678999999999999877654 455 7777655332 21
Q ss_pred c-eeecccccCC---ccee--eCCCC-CEEEEEECCCcEEEEeCC-CCce---eeeeecccccccccccCCCCeEEEEEe
Q 003360 224 P-LLDFETKLKD---GSQS--HSKVK-NLFITGHSDGAINFWDVS-CPLF---LLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ~-~~~~~~~h~g---~V~~--~s~~~-~~l~Tgs~DGtVriWD~s-~~~~---~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
. ....+..+.. +..+ ..|.. ..+++|+.|-.+|+||.. .... .++.++... .-+.-....|++++|+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~--hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH--HLVEDDPVNITGLVYS 345 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc--cccccCcccceeEEec
Confidence 1 1112222222 2233 45544 489999999999999972 1110 000111000 0001122679999999
Q ss_pred CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEE-ccCCCEEEEEecCCe
Q 003360 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNM-NRNSQHLAVGSDQGY 369 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~-s~~g~~lasGs~dG~ 369 (826)
.++..|.++-.|-.|.+|.-..+.. +..... ++...... ..+..| ...|..+-| -|...+|++|++.|.
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G--~~p~~~---s~~~~~~k---~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDG--SEPDPS---SPREQYVK---RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH 417 (559)
T ss_pred CCccceeeeecccceEEeccccccC--CCCCCC---cchhhccc---hhhcccccccccceeeeccCccceEEecCccce
Confidence 8888888888888888884332211 111000 00000000 112222 223777776 577789999999999
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
|.|||-.+++++.-+ .+...-|.||.-.|. -+.|++++-|..||||...+.+
T Consensus 418 IFiW~K~t~eii~~M---egDr~VVNCLEpHP~------~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFM---EGDRHVVNCLEPHPH------LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEEEecchhHHHHHh---hcccceEeccCCCCC------CchhhccCCccceeeecCCccc
Confidence 999999999888322 233338888888885 7789999999999999986433
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=96.34 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=136.9
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-C--CcEEEec
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-D--EDYSLLA 219 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d--~~i~~w~ 219 (826)
.+..++....+|.+.+|.+..-.. . ......+. ..+.+..+.-.+..+++++ |+ . .-+.+|+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~-------h------ss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDL-------H------SSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCcc-------c------cccceeee-cCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 346678888999999998763100 0 00111122 2356777777777777776 55 4 4578886
Q ss_pred cCCC-ceeeccc------ccCCccee----eCCC--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCe
Q 003360 220 KSVP-PLLDFET------KLKDGSQS----HSKV--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 220 ~~~~-~~~~~~~------~h~g~V~~----~s~~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
.... +++..+. +..-.||- |-+. ...++|++.-+.||+||...+. .|+..+ ..-..+|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~f--------d~~E~~i 250 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQF--------DFLENPI 250 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEe--------ccccCcc
Confidence 5432 2222211 12223333 6665 7799999999999999994332 133333 3345799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+++...|.+..+++|..-|.+..||++++.... ..+....+.|++|..+|.+.++|+++-
T Consensus 251 s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g--------------------~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG--------------------CGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred eeeeecCCCcEEEEecccchhheecccCceeec--------------------cccCCccCCcceEEEcCCCceEEeecc
Confidence 999999999999999999999999999543311 334455788999999999999999999
Q ss_pred CCeEEEEecCCCeeEEee
Q 003360 367 QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~ 384 (826)
|..|||+|+.+.++++..
T Consensus 311 DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ceeEEEeecccchhhhhh
Confidence 999999999997777433
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-07 Score=93.41 Aligned_cols=226 Identities=13% Similarity=0.117 Sum_probs=154.9
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCceeecccccCCcc--ee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SVPPLLDFETKLKDGS--QS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~~~~~~~~h~g~V--~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+.+|...|+....-|..+.+++.+ |.++++|-+ +..+..+- ..|..+. .+ +.+....|+.|-.+|+|.=+..
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 3577888889888999999999998 999999933 33222221 2244333 33 7778889999999999998877
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc---------c--ceEEEeec
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE---------N--SFLSFTGS 329 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~---------~--~~~~i~~s 329 (826)
+...... ..++ ....|...|..+-|+-...++++.+.|..+.---.+.+...+. . .+. ..+-
T Consensus 98 sedfnkm-~~~r-----~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fv 170 (404)
T KOG1409|consen 98 SEDFNKM-TFLK-----DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFV 170 (404)
T ss_pred hhhhhhc-chhh-----hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEe
Confidence 4332111 1111 1235778999999999999999999998765433333311100 0 000 1111
Q ss_pred --CCCC--eEEEEE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 330 --KKGN--SHIIHS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 330 --~~~~--~~~~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
..+. .+++.. ..+..|.+.|++++|.+..+++.+|+.|..|.+||+...+-+ .....+|...|..+.+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSY 248 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce--eeeeccchhhhhhhhh
Confidence 1111 011110 445567888999999999999999999999999999776654 3334578888998888
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+. ...+++++.||.|.+|+.+.
T Consensus 249 ~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhh------heeeeeccCCCeEEEEeccc
Confidence 875 78899999999999999984
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.0005 Score=84.50 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=107.7
Q ss_pred EEEEeeCCCeEEEec----CCcEEEeccCCCceeec--cc-ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee
Q 003360 197 AMKLITGNSFILSSA----DEDYSLLAKSVPPLLDF--ET-KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~--~~-~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
+++|-|.|..+++.. ...|.+|..++-....| .. +....|.. |++++.+||..-.|. |++|-...-.+.+
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 468899999988854 23477775544333333 22 23445555 999999999987765 9999987666544
Q ss_pred eeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCCCCeEEEEE----
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKKGNSHIIHS---- 339 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~~~~~~~~~---- 339 (826)
-..+.+. ....+..+.|+|.. ..|.+...+|.+..+++.-....... .-..+...-||....+..
T Consensus 340 Kqei~~~-------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 340 KQEIRFS-------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEEEEcc-------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 3444422 12345559999965 56888888788877766422110000 000111112333332221
Q ss_pred -------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 340 -------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 340 -------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
........+|.+++|++++..+|+-..||.|.+|....
T Consensus 413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 22334478899999999998899999999999998543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-07 Score=107.15 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=136.8
Q ss_pred EEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcc------ee-eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 198 MKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGS------QS-HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V------~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
..+.-....++... +..+.+|+........- ..+.... .. ++++.-++++|+.-|.|.+|+...... ++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~-i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-p~- 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSK-IQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-PI- 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehh-cCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-cc-
Confidence 55555566666655 77777775544332211 2222221 11 777888999999999999999952221 11
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
...+|.+.|..+.|+-+++++++.|.|.++|+|++.+.+... ..-..|.+.|
T Consensus 170 --------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------~~~fgHsaRv 221 (967)
T KOG0974|consen 170 --------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------CTGFGHSARV 221 (967)
T ss_pred --------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------ccccccccee
Confidence 246899999999999999999999999999999999665421 2334578889
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..++|.|+ .++++++|-+.++|+....++- .........|..+...+ +...+++++.|+.+++|+..
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~---~y~~h~g~~iw~~~~~~------~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE---VYDEHSGKGIWKIAVPI------GVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh---hhhhhhhcceeEEEEcC------CceEEEeeccCcchhhhhhh
Confidence 99999999 7999999999999977544332 12123345788888887 47889999999999999987
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=92.24 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=185.7
Q ss_pred CCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCC--CCCCCCCCceEEE
Q 003360 73 IPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS--SDPNKPKQDSFLL 150 (826)
Q Consensus 73 ~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~--~~~~~~~~~~liv 150 (826)
.|+..+.|+....+ ..-+..|.--....+.++++.++..+..-..+..++...+...+.++|.+ .+| =++
T Consensus 45 ~~lya~~Ws~~~~~-~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p-------dlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDK-KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP-------DLL 116 (364)
T ss_pred CceeeeccccCCCc-ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-------chh
Confidence 47888899764322 23333444433346788999998666554444445666677777788765 232 156
Q ss_pred eccCccEEEecchh------HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCC
Q 003360 151 LGKSGHFYAFDDCQ------IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 151 ~~~~G~l~~~d~~~------i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~ 222 (826)
.+++..|.+|.... ++..+... .-..+..++|...|+...+ ++.+++ |-++.+|+...
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~--------------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNN--------------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccC--------------cccccCCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 67778999996552 11111000 0133456888888887554 555566 99999996554
Q ss_pred C---ceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-
Q 003360 223 P---PLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS- 295 (826)
Q Consensus 223 ~---~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~- 295 (826)
+ .+.+....|...|.. |...+ +++|+.+.||+||++|+....- .++-++... ...+...++|+++.
T Consensus 183 ~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~----~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 183 GVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPS----PSTPLLRLSWNKQDP 255 (364)
T ss_pred ccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCC----CCCcceeeccCcCCc
Confidence 3 233334679999988 77644 5899999999999999943321 112222110 13578889998865
Q ss_pred CEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEE
Q 003360 296 RVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLL 373 (826)
Q Consensus 296 ~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vw 373 (826)
+++|+-..| ..|.|.|++.... .. .++..|.+.|..++|.|. ..+++++++|..+.+|
T Consensus 256 nymATf~~dS~~V~iLDiR~P~t----------------pv----a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPCT----------------PV----ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCCc----------------ce----ehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 567765444 5799999983211 21 566778999999999985 5689999999999999
Q ss_pred ecCCCee--EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 374 DTEGPTV--LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 374 D~~~~~~--l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
|+.+.-. +..--+.......|..+.|++. .+..++.+.
T Consensus 316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~-----~~Dwiai~~ 355 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSS-----QPDWIAICF 355 (364)
T ss_pred ecccccccCCCCchhhhhccceeeeeeeccc-----CCCEEEEEe
Confidence 9975422 1000001123457889999974 356666665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-06 Score=95.73 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=108.2
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEE
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.+.+|+........+ ..+.+.+.+ |+|+++.|+..+.+ ..|.+||+.+.....+.. ......+
T Consensus 185 ~l~i~D~~g~~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------~~g~~~~ 252 (433)
T PRK04922 185 ALQVADSDGYNPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-----------FRGINGA 252 (433)
T ss_pred EEEEECCCCCCceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----------CCCCccC
Confidence 355565443333333 344555655 99999988887643 469999995554322111 1223457
Q ss_pred EEEeCCCCEEE-EEeCCC--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 289 LYYDGTSRVLV-SGDQSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 289 l~fsp~~~~La-sgs~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.+|+|+++.|+ +.+.+| .|.+||+.++.. .....+.......+|+|+|+.|++.+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~----------------------~~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL----------------------TRLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCe----------------------EECccCCCCccceEECCCCCEEEEEE
Confidence 89999998775 455666 488888764321 11112233456789999999888876
Q ss_pred c-CCe--EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceE
Q 003360 366 D-QGY--VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNML 432 (826)
Q Consensus 366 ~-dG~--V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i 432 (826)
. +|. |+++|+.++...... . .........|+| |+.+|+..+.++ .|.+||+.+|+..
T Consensus 311 d~~g~~~iy~~dl~~g~~~~lt-~---~g~~~~~~~~Sp------DG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 311 DRGGRPQIYRVAASGGSAERLT-F---QGNYNARASVSP------DGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCCCceEEEEECCCCCeEEee-c---CCCCccCEEECC------CCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 4 444 777777666543111 1 112344578888 688887765443 6999999877654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-08 Score=116.40 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=144.6
Q ss_pred CCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEec
Q 003360 141 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLA 219 (826)
Q Consensus 141 ~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~ 219 (826)
+.+..++.+.++.+|.+.+|.-+. . .+.+.....+. +.|+.+.|+..|.....+. ||.+.+|.
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~~-------~--------~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGH-------G--------QQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred CCCCCceEEecCCCceEEEEeccC-------C--------CeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecc
Confidence 445567778888899988876654 1 11122222333 8899999999998887776 99999997
Q ss_pred cCCCceeecccccCCcceeeCCCCCEEEEEE---CCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 220 KSVPPLLDFETKLKDGSQSHSKVKNLFITGH---SDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 220 ~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs---~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
..-.++... ..|..+...|-=-+.+++|++ .++.+.+||. -.+...++. ..|...++++++.|..
T Consensus 2280 ~~pk~~~s~-qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----------~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2280 ASPKPYTSW-QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH----------TCHDGGATVLAYAPKH 2348 (2439)
T ss_pred cCCcceecc-ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee----------eecCCCceEEEEcCcc
Confidence 763333333 456666666322236677764 5789999998 222222211 4688899999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
++|++|+.+|.|++||++..+.. |.-+. +. ...++++|+..|.++||++
T Consensus 2349 qllisggr~G~v~l~D~rqrql~--------------------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLR--------------------------HTFQA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHH--------------------------HHhhh----hh-hhheeeccCcccceEEEEc
Confidence 99999999999999999843321 11111 33 3457999999999999999
Q ss_pred CCCeeEEeeecccCCCCCee----EEEEeecccCCCCCcEEEEEECCCc
Q 003360 376 EGPTVLYQKHIASDISSGIV----SLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~----sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....++++.....+++-.. .+... -.+.|++|+.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-------~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVG-------QCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeec-------cCceEEEecCCCC
Confidence 99988866654333222111 11112 1577888888874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-05 Score=86.04 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=137.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC--CeEEE---ecC---CcEEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN--SFILS---SAD---EDYSL 217 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~--~~l~~---~~d---~~i~~ 217 (826)
..+.+..-.+++++|+..... ...-..|.+.|+...++|.+ ..+++ +.+ ..+++
T Consensus 137 Esl~arlv~nev~f~~~~~f~------------------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri 198 (566)
T KOG2315|consen 137 ESLAARLVSNEVQFYDLGSFK------------------TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI 198 (566)
T ss_pred hhhhhhhhcceEEEEecCCcc------------------ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE
Confidence 444555566788898887621 11124677889999998873 33443 223 45888
Q ss_pred eccCCCceeec----ccccCCccee-eCCCCC-EEEEEE--CCC---------cEEEEeCCCCceeeeeecccccccccc
Q 003360 218 LAKSVPPLLDF----ETKLKDGSQS-HSKVKN-LFITGH--SDG---------AINFWDVSCPLFLLILSLKQQSEKDFS 280 (826)
Q Consensus 218 w~~~~~~~~~~----~~~h~g~V~~-~s~~~~-~l~Tgs--~DG---------tVriWD~s~~~~~~i~~l~~~~~~~~~ 280 (826)
|.......... ..-....|.- |.+-|+ +|+.++ -|. ++.+.++.+... .+.
T Consensus 199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------------~V~ 266 (566)
T KOG2315|consen 199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------------SVP 266 (566)
T ss_pred eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------------EEe
Confidence 85331100000 0001111222 555444 333222 232 444444432220 011
Q ss_pred c-CCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 281 L-SGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 281 ~-h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
+ ..++|.++.|+|+++.|++. -.=..|.|||++.. ..+....++=.++-|+|.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------------------------~v~df~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------------------------PVFDFPEGPRNTAFFNPH 322 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------------------------EeEeCCCCCccceEECCC
Confidence 2 23799999999999988774 44568999999832 334445777889999999
Q ss_pred CCEEEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECCC
Q 003360 358 SQHLAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDN 428 (826)
Q Consensus 358 g~~lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~t 428 (826)
|++++.++- -|.|-|||..+.+++-..... .-+-..|+| ||.++++++. |..++||+..
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-----~tt~~eW~P------dGe~flTATTaPRlrvdNg~Kiwhyt- 390 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-----NTTVFEWSP------DGEYFLTATTAPRLRVDNGIKIWHYT- 390 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccC-----CceEEEEcC------CCcEEEEEeccccEEecCCeEEEEec-
Confidence 998887653 588999999998887443321 234478998 7999999986 6789999976
Q ss_pred CceEEe
Q 003360 429 GNMLST 434 (826)
Q Consensus 429 g~~i~~ 434 (826)
|..+..
T Consensus 391 G~~l~~ 396 (566)
T KOG2315|consen 391 GSLLHE 396 (566)
T ss_pred Cceeeh
Confidence 776644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-06 Score=93.52 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=98.1
Q ss_pred cCCccee--eCCCCCEEEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCC
Q 003360 232 LKDGSQS--HSKVKNLFITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSG 305 (826)
Q Consensus 232 h~g~V~~--~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg 305 (826)
+.+.+.+ |+|+|+.|+..+. +..|.+||+.+.....+..+ ...+..+.|+||++.|+.. +.+|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCCcCCeEECCCCCEEEEEEcCCC
Confidence 3444555 9999998886542 45789999955442221111 1234468999999988754 4455
Q ss_pred --cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCee
Q 003360 306 --MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTV 380 (826)
Q Consensus 306 --~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~ 380 (826)
.|.+||+.++.. .+.......+....|+|+|+.|+..+.+ | .|.++|+.++..
T Consensus 266 ~~~I~~~d~~tg~~----------------------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 266 SLNLYVMDLASGQI----------------------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcEEEEEECCCCCE----------------------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 477788764321 1112223457889999999999887764 3 455557766654
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCce
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNM 431 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~ 431 (826)
.. .. ..........|+| |+.+|+..+.+ ..|.+||+.+|+.
T Consensus 324 ~~-lt---~~~~~~~~~~~Sp------DG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 324 QR-IT---WEGSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred EE-ee---cCCCCccCEEECC------CCCEEEEEEccCCCceEEEEECCCCCe
Confidence 31 11 1222345677888 68888776544 3588899987764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.8e-06 Score=92.44 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=100.4
Q ss_pred ccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCC
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQS 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~d 304 (826)
.+.+.+.+ |+|+|+.|+..+.+ ..|.+||+.++....+.. ....+.+.+|+||++.|+ +.+.+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------CCCCccceEECCCCCEEEEEEccC
Confidence 34555655 99999988877643 359999995554322111 113456889999998886 56788
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEec--CCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDT--EGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~--~~~~~l 381 (826)
|...||.+..... .. .+...+.+.+....|+|||+.|+..+. +|...||.+ .++...
T Consensus 262 g~~~Iy~~d~~~~---------------~~-----~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 262 GNSQIYTVNADGS---------------GL-----RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCceEEEEECCCC---------------Cc-----EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 8888887752211 01 111122334567889999998887664 455566654 444332
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i 432 (826)
. ... . ........|+| |+++|+..+.++ .|.+||..+|+..
T Consensus 322 ~-lt~-~--g~~~~~~~~Sp------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 322 R-VTF-T--GSYNTSPRISP------DGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred E-Eec-C--CCCcCceEECC------CCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 1 111 1 12233567888 688888777654 6999999877643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-06 Score=94.30 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=107.2
Q ss_pred EEEeccCCCceeecccccCCccee--eCCCCCEEEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEE
Q 003360 215 YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 215 i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
+.+|+........+ ..|.+.+.+ |+|+|+.|+..+. +..|.+||+.+..... + ..+...+...
T Consensus 184 l~~~d~dg~~~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l--------~~~~g~~~~~ 251 (435)
T PRK05137 184 LAIMDQDGANVRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---V--------GNFPGMTFAP 251 (435)
T ss_pred EEEECCCCCCcEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---e--------ecCCCcccCc
Confidence 34444433333333 455666766 9999998887764 4689999995544222 1 1223456788
Q ss_pred EEeCCCCEEE-EEeCCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLV-SGDQSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~La-sgs~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|+++.|+ +.+.+|. |.+||+.++.. .+...+.+..+..+|+|||+.|+..+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~----------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT----------------------TRLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce----------------------EEccCCCCccCceeEcCCCCEEEEEEC
Confidence 9999998775 5566665 55556653321 112223344677899999999988774
Q ss_pred -CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCc
Q 003360 367 -QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGN 430 (826)
Q Consensus 367 -dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~ 430 (826)
+| .|++||+.++.... .. .....+....|+| |+..|+..+.+ ..|.+||..++.
T Consensus 310 ~~g~~~Iy~~d~~g~~~~~-lt---~~~~~~~~~~~Sp------dG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPRR-IS---FGGGRYSTPVWSP------RGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCCCeEEEEECCCCCeEE-ee---cCCCcccCeEECC------CCCEEEEEEcCCCceEEEEEECCCCc
Confidence 33 68888987765431 11 1233455677888 68888776643 367888876443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=91.29 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=120.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--C--CcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++... + ..+.+|+......... ..+.+.+.+ |+|+++.|+ +...++ .|.+|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 345566788889999999998865 2 3577776554333322 233444444 999998665 555555 48888
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCc--EEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+....|+|+++.|+..+. ++. |.+|++.++..
T Consensus 264 d~~~~~~~~---l~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~------------------ 314 (417)
T TIGR02800 264 DLDGKQLTR---LT--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV------------------ 314 (417)
T ss_pred ECCCCCEEE---CC--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE------------------
Confidence 885444211 21 22233456789999998876554 444 55555542211
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.........+....|+|+|.+++.++.++ .|.+||+.++....... . .......|+| |+..|
T Consensus 315 ----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~---~--~~~~~p~~sp------dg~~l 379 (417)
T TIGR02800 315 ----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD---T--GLDESPSFAP------NGRMI 379 (417)
T ss_pred ----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---C--CCCCCceECC------CCCEE
Confidence 11112234567789999999999988876 89999998765431111 1 1223456777 57777
Q ss_pred EEEECCC---cEEEEECCCCceEEe
Q 003360 413 VIATKDS---SVLVLDSDNGNMLST 434 (826)
Q Consensus 413 ~sgs~Dg---~V~iwd~~tg~~i~~ 434 (826)
+..+.++ .+++.+.. |+....
T Consensus 380 ~~~~~~~~~~~l~~~~~~-g~~~~~ 403 (417)
T TIGR02800 380 LYATTRGGRGVLGLVSTD-GRFRAR 403 (417)
T ss_pred EEEEeCCCcEEEEEEECC-CceeeE
Confidence 7766654 35555544 544433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00034 Score=77.16 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=127.8
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-ceeec--ccccC-----------Cccee--eCCCCCEEEEEE-C
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP-PLLDF--ETKLK-----------DGSQS--HSKVKNLFITGH-S 251 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~-~~~~~--~~~h~-----------g~V~~--~s~~~~~l~Tgs-~ 251 (826)
.......+++++++++++++. ++.+.+++.... .+... ...|. ....+ ++|+++++++.. .
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 334556788999999999987 788888854321 11111 11111 11122 899999777653 3
Q ss_pred CCcEEEEeCCCCc--eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEee
Q 003360 252 DGAINFWDVSCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 252 DGtVriWD~s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
...|.+|++.... +.....+. ...+..-+.+.|+|+++++.+..+ +++|.+|++..... .+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~-------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g----~~~---- 229 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIK-------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG----SLT---- 229 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEE-------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT----EEE----
T ss_pred CCEEEEEEEeCCCceEEEeeccc-------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC----cee----
Confidence 4589999984333 32222222 123467899999999988766554 67899999873211 000
Q ss_pred cCCCCeEEEEEEEEee--c--cCCeEEEEEccCCCEEEEEe-cCCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEee
Q 003360 329 SKKGNSHIIHSVKVMK--I--NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~--~--~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.+..+.... . ......|+++|+|++|.++. .+.+|.+|++. ++.+....... ........+.+++
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 230 -------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSP 301 (345)
T ss_dssp -------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-T
T ss_pred -------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeC
Confidence 000011111 1 12578899999999887766 56789999993 34443222221 2234578899988
Q ss_pred cccCCCCCcEEEEEE-CCCcEEEEEC--CCCceEEe
Q 003360 402 CSLQGFEKNFLVIAT-KDSSVLVLDS--DNGNMLST 434 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs-~Dg~V~iwd~--~tg~~i~~ 434 (826)
++.+|+++. .++.|.+|+. .+|.+...
T Consensus 302 ------~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 302 ------DGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ------TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ------CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 699999887 4567888754 67765544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=93.49 Aligned_cols=338 Identities=17% Similarity=0.114 Sum_probs=191.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee--eCCCCCEEEEEEC-CCcEEEEeC-C
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDV-S 261 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~-s 261 (826)
.|...|+.+. -.-..++.+++ |+.++.|....-....+ ...|.+-+.+ .+.++.++.|+.. |..+|++|+ .
T Consensus 7 mhrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4777777774 34456778888 99999996543222222 2446666666 6778888899777 999999987 3
Q ss_pred CCceeeee--ecc----------------------------------c-ccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 262 CPLFLLIL--SLK----------------------------------Q-QSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 262 ~~~~~~i~--~l~----------------------------------~-~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
......+. .+. . +..-.-..|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 32210100 000 0 0000013466899999999999999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCC-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKG-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|.|..|.....-...... +.+.... +.. +.+.+.++..+++.|+|+|..+++-+.|..|++++.++++++..
T Consensus 166 gmVEyWs~e~~~qfPr~~---l~~~~K~eTdL----y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTN---LNFELKHETDL----YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ceeEeecCCCcccCcccc---ccccccccchh----hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999987411100000 0111000 000 33344567789999999999999999999999999999887632
Q ss_pred eecc-----------------------------cCC-CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 384 KHIA-----------------------------SDI-SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 384 ~~~~-----------------------------~~~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.... ..| ...-+.+.|.. ++++|+.|+--| |+++++.|+.++.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde------s~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE------SGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC------CCCEEEeeccee-EEEEEeecCeEEE
Confidence 2110 001 11234455655 489999998877 9999999999888
Q ss_pred eeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc--ccccccceeeee
Q 003360 434 TNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS--HAVQGVKKVLYK 511 (826)
Q Consensus 434 ~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~--~~~~g~~k~~~k 511 (826)
.+ +... ..+.+.+....+..+. ............+.-. ...++.+++|+-+.-|+|-+. .........++.
T Consensus 312 i~-gk~e-~ir~~~~sl~q~~~k~----~~~~~~~~a~~np~~~-~~~dpt~~c~a~kk~rfylf~ep~~~~~~~dvfne 384 (558)
T KOG0882|consen 312 IL-GKDE-AIRFTRLSLYQGAQKS----NLAALEVAASNNPLLE-FQKDPTIVCTAFKKNRFYLFREPEFTESDRDVFNE 384 (558)
T ss_pred Ee-ccch-hhhhhhHHHHhhhhhc----cchhhhhhhccCcccc-cCCCCeEEEeeeecceEEEEecCCCCcchhhhhcc
Confidence 76 3322 2222222222221111 0000000111111111 344678888887655555442 111112222222
Q ss_pred eecCCCCceeeEeeee--CCceEEEEEEeeceEEEeccCCc
Q 003360 512 KKFHSSSCCWASTFYS--GSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 512 ~~~~~~~c~~~~~~~~--~~~~~lv~~~~~G~I~i~slP~L 550 (826)
....+ ..-.+..... ..+...++...-|+|.++-+|+-
T Consensus 385 ~p~~~-~~~~~~~~~g~~~l~~~aiihtt~gdi~~kl~p~e 424 (558)
T KOG0882|consen 385 KPLKE-ELMEARQEEGNKLLGKAAIIHTTQGDIHIKLYPEE 424 (558)
T ss_pred CcChh-HhhhhhhccCceecccceEEEecccceEEEecccc
Confidence 11110 0000000001 23455677788899999988863
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.4e-07 Score=90.81 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=142.5
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCc----eeecccccCCc------------cee--eCCCC--CEEEEEE
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAK-SVPP----LLDFETKLKDG------------SQS--HSKVK--NLFITGH 250 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~----~~~~~~~h~g~------------V~~--~s~~~--~~l~Tgs 250 (826)
.-|+++.|...|.+|++|. +|.|.++.. +... +.+....|... |.. |.+.+ ..++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5689999999999999999 899888832 2111 22222233322 222 55544 4677788
Q ss_pred CCCcEEEEeCCCCceee-------------eeeccccc-------------ccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 251 SDGAINFWDVSCPLFLL-------------ILSLKQQS-------------EKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~-------------i~~l~~~~-------------~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.|.+|++|-+..+.... +..|+-.. ..--..|..-|.+|+++.|...++++ .|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 99999999883221100 00010000 00124577889999999999999877 56
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeE--
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVL-- 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l-- 381 (826)
=.|.+|++..... ++.-+..-+ .....+..-|++..|+|. ...++..+..|+|++.|+|+..+.
T Consensus 185 LRINLWnlei~d~----sFnIVDIKP---------~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ----SFNIVDIKP---------ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred eeeeeccccccCC----ceeEEEccc---------cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 6899999974321 111000000 001111334899999984 567888899999999999976543
Q ss_pred ----Eeeec-------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC-CCCceEEeeeccCCCCCc
Q 003360 382 ----YQKHI-------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS-DNGNMLSTNLIHPKKPSR 444 (826)
Q Consensus 382 ----~~~~~-------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~-~tg~~i~~~~~~~~~~~~ 444 (826)
+.... ..+.-+.|..+.|+. +|+++++-. --+|++||+ ...+.+.++.+|......
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~------sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSH------SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEcc------CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHH
Confidence 11110 011224578889998 488887643 358999999 456788888777654333
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=111.91 Aligned_cols=196 Identities=15% Similarity=0.218 Sum_probs=143.7
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCcee
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
+-..|.++.-+|..++.++|+ |+.+++|..+.+ .+..+...-...|+. |+..|+.+..+-.||.+.+|.++.+..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~- 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY- 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcce-
Confidence 346788888899999999988 999999965433 333332322344544 899999999999999999999963321
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
+.+ .-|....+...|-. ..++++ +.++.|.+||....... . +...
T Consensus 2286 ----~s~------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~---------------s-----~v~~ 2333 (2439)
T KOG1064|consen 2286 ----TSW------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN---------------S-----LVHT 2333 (2439)
T ss_pred ----ecc------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc---------------c-----eeee
Confidence 221 24666667777755 456665 34678999997643221 1 2224
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|.+.++++++-|..+.+++|+.+|.|++||+++.+++++++. +.. ..++++|+..|.++|
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~~-------~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LDT-------REYFVTGSSEGNIKI 2394 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hhh-------hheeeccCcccceEE
Confidence 5678899999999999999999999999999999988855442 121 678999999999999
Q ss_pred EECCCCceEEeeecc
Q 003360 424 LDSDNGNMLSTNLIH 438 (826)
Q Consensus 424 wd~~tg~~i~~~~~~ 438 (826)
|++..-..+.+++..
T Consensus 2395 w~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EEccccchhhcCchh
Confidence 999987777776543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-06 Score=90.81 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=110.6
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+.+-..++-|...|.|.+|+..+..+ -+.+. -..|.+.|+++.++.+-..|.+++.|+.|..|++.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~i--t~~~s------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-- 136 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEI--TAKLS------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-- 136 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeE--EEEEe------cCCCCCcceeeecccccCceEecCCceeEEEEeccccee--
Confidence 44455888999999999999955552 12222 135779999999999999999999999999999973211
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
. ......+..+.+++++|||..+++|+ +.|++||+.+++++.++. +|.++|.++.|
T Consensus 137 ---------------~----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f 192 (541)
T KOG4547|consen 137 ---------------I----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSF 192 (541)
T ss_pred ---------------e----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEE
Confidence 0 11122244589999999999999876 569999999999996664 99999999999
Q ss_pred eecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 400 ETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
... ..+..|.+++++ ..+.-+.+|-..
T Consensus 193 ~~~-~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 193 TTL-IDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEe-ccccccceeeeccccccceeEEEEE
Confidence 874 233235555543 333345555443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-05 Score=86.92 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=117.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE--------------------eCCCCEEEE
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--------------------DGTSRVLVS 300 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--------------------sp~~~~Las 300 (826)
+...++|....||.+||||.....++.-+.- .... .+..++..| +.+...++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP----IASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc----chhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 4456788888888899998844442221110 0000 012222222 234557888
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
|...|.|.+|++..+.. ..+ +....|.+.|.++.++.+-..+.+++.|+.+..|+.....+
T Consensus 76 gt~~g~v~~ys~~~g~i----------------t~~---~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEI----------------TAK---LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred ecCCccEEEEEecCCeE----------------EEE---EecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 99999999999884432 111 44567889999999999999999999999999999998887
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+.... .....+.+++.+| |+..|++++ +.|++||+++++.+.+|++|...
T Consensus 137 ~~~~~---~~~~~~~sl~is~------D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 137 IRIWK---EQKPLVSSLCISP------DGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eeeec---cCCCccceEEEcC------CCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 74443 4556788899998 688888775 68999999999999999888765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00043 Score=78.49 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=57.0
Q ss_pred EEEEEeCCCcEEEEEeCCCC-----CccccceEEEeec-----------C----CC-Ce--EEEEEEEE------e----
Q 003360 297 VLVSGDQSGMVRIFKLKYEP-----HAIENSFLSFTGS-----------K----KG-NS--HIIHSVKV------M---- 343 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~-----~~~~~~~~~i~~s-----------~----~~-~~--~~~~~~~~------~---- 343 (826)
++|+|...|+|.++|+.++. +.|...+..+.+. . .+ .. ..+-.++. .
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 68999999999999999873 3344444433321 1 01 00 11111111 1
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.-..+|+.+..|..|++|++...+.-+-+||+++..++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHH
Confidence 12567999999999999999999999999999776544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=91.09 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=113.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
.++.++++|.+..+....+.++ +.+...++.... -...-+++.|..+.....++..-|.+.-+|.-.-.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~---------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC---------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee---------cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 6778888888888887777777 222111111111 11234566677776667777666666666654211
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.+.+ .....|-.-++.++|+||++++.++..|..|+|-.+...-.+..+. .+|..-|..
T Consensus 141 --------------~~~~-----~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc--lGH~eFVS~ 199 (390)
T KOG3914|consen 141 --------------SGRC-----EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC--LGHKEFVST 199 (390)
T ss_pred --------------ccCc-----chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc--cccHhheee
Confidence 0111 3334556679999999999999999999999999887777664333 588889999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
++..+ +..|+++|.|++|++||..+|+++.++
T Consensus 200 isl~~-------~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 200 ISLTD-------NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeecc-------CceeeecCCCCcEEEEecccCCccccc
Confidence 98876 777999999999999999999998764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00015 Score=80.30 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=144.9
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKS 221 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~ 221 (826)
+..++++...+|.+.++|..+.+ ..-.++.. .....+++++||++++++. .+.+.+++..
T Consensus 47 Dgr~~yv~~rdg~vsviD~~~~~-----------------~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 47 DGRYLYVANRDGTVSVIDLATGK-----------------VVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp -SSEEEEEETTSEEEEEETTSSS-----------------EEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCccc-----------------EEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 34677888889999999998721 12222322 2356789999999999887 8899999865
Q ss_pred CCce-eecccc------cCCccee--eCCCCCEEEEEECC-CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 222 VPPL-LDFETK------LKDGSQS--HSKVKNLFITGHSD-GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 222 ~~~~-~~~~~~------h~g~V~~--~s~~~~~l~Tgs~D-GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.-.. .....+ ....+.+ .++.+..++..-.| +.|-+-|.+......+..+. .+.......|
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~ 179 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGF 179 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE
T ss_pred cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec---------cccccccccc
Confidence 4322 222111 1223444 56777756555554 77777777443321111221 2235567899
Q ss_pred eCCCCEEEEE-eCCCcEEEEEeCCCCC---------ccccceEEEe-------e--cCCCCeE-EEEE------------
Q 003360 292 DGTSRVLVSG-DQSGMVRIFKLKYEPH---------AIENSFLSFT-------G--SKKGNSH-IIHS------------ 339 (826)
Q Consensus 292 sp~~~~Lasg-s~dg~V~iwd~~~~~~---------~~~~~~~~i~-------~--s~~~~~~-~~~~------------ 339 (826)
+|++++++++ ..+..|-++|..++.. .++.....+. + +..+... ..-+
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 9999988775 4456788888776521 1111110000 0 0000000 0000
Q ss_pred --EEEeeccCCeEEEEEccCCCEEEEE----ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 340 --VKVMKINGSIISLNMNRNSQHLAVG----SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 340 --~~~~~~~~~V~~l~~s~~g~~lasG----s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
++.....+.-.-+..+|++.+|.+. ...++|.|+|..+.+++.+.. ......+..++|++ ||..++
T Consensus 260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~--~~~~~~~~h~ef~~------dG~~v~ 331 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT--PGPGKRVVHMEFNP------DGKEVW 331 (369)
T ss_dssp SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH--HHHT--EEEEEE-T------TSSEEE
T ss_pred eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe--ccCCCcEeccEECC------CCCEEE
Confidence 3344444544778889999999988 556899999999998774433 22223488899998 688888
Q ss_pred EEECCC--cEEEEECCCCceEEeee
Q 003360 414 IATKDS--SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 414 sgs~Dg--~V~iwd~~tg~~i~~~~ 436 (826)
++.+++ .|.+||..|.+.+..++
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 777655 59999999999998865
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=85.90 Aligned_cols=203 Identities=12% Similarity=-0.005 Sum_probs=115.0
Q ss_pred cCCCEEEEEEeeCCCeEE---Eec-CCcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEEC-----CCcEEE
Q 003360 191 LDSSITAMKLITGNSFIL---SSA-DEDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHS-----DGAINF 257 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~---~~~-d~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-----DGtVri 257 (826)
....+..-+|+|||+.++ ++. ++.-.+| +........+ ....+.... |+|||+.|+..+. |..+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 344455668999998632 333 4544455 3322222222 122333333 9999987776543 334455
Q ss_pred EeCCC---CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 258 WDVSC---PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 258 WD~s~---~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
||+.. ..... +. ..+...+...+|+||++.|+..+ .+|...||.+..... .+.
T Consensus 262 ~~~~~g~~g~~~~---lt-------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-------------g~~ 318 (428)
T PRK01029 262 FSLETGAIGKPRR---LL-------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-------------GQS 318 (428)
T ss_pred eecccCCCCcceE---ee-------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-------------ccc
Confidence 77632 11101 11 01112345679999999777655 577777776542110 000
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~ 410 (826)
. .........+....|||||++|+....+ ..|.+||+.+++..... .....+....|+| |+.
T Consensus 319 ~-----~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~~~~~~~p~wSp------DG~ 383 (428)
T PRK01029 319 P-----RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TSPENKESPSWAI------DSL 383 (428)
T ss_pred e-----EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CCCCCccceEECC------CCC
Confidence 1 1111223456788999999999876643 36899999888765211 1123456678888 677
Q ss_pred EEEEEEC---CCcEEEEECCCCceE
Q 003360 411 FLVIATK---DSSVLVLDSDNGNML 432 (826)
Q Consensus 411 ~l~sgs~---Dg~V~iwd~~tg~~i 432 (826)
.|+..+. ...|++||+.+++..
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE
Confidence 7765443 346889998876643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-05 Score=87.27 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=100.7
Q ss_pred cCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCCC
Q 003360 232 LKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQSG 305 (826)
Q Consensus 232 h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~dg 305 (826)
+...+.+ |+|+++.|+.+..+ ..|++||+....... +. .+...+.+++|+|+++.|+ +.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~--------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VA--------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ee--------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3444545 99999999887654 479999995443211 11 1224566789999998776 445555
Q ss_pred --cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCee
Q 003360 306 --MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTV 380 (826)
Q Consensus 306 --~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~ 380 (826)
.|.+|++.++.. .....+........|+|+|++|+..+.. | .|+++|+.++..
T Consensus 257 ~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 257 NPDIYVMDLDGKQL----------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CccEEEEECCCCCE----------------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 477777764321 1111122334567899999988876653 3 588888877664
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCce
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNM 431 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~ 431 (826)
.. .. .+...+....|++ ++.+|+.++.++ .|.+||+.++..
T Consensus 315 ~~-l~---~~~~~~~~~~~sp------dg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 315 RR-LT---FRGGYNASPSWSP------DGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EE-ee---cCCCCccCeEECC------CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 31 11 2234456678888 588888888776 789999886543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00087 Score=70.44 Aligned_cols=209 Identities=10% Similarity=0.156 Sum_probs=129.1
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCC-Cceeec--ccccCCc----------cee--eCCCCCEEEEEE--CCCcEE
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSV-PPLLDF--ETKLKDG----------SQS--HSKVKNLFITGH--SDGAIN 256 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~-~~~~~~--~~~h~g~----------V~~--~s~~~~~l~Tgs--~DGtVr 256 (826)
+.+++++++++++++. .+.|.++..+. +.+... ...|.++ +.. +.|++++|++.. .| .|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEE
Confidence 7789999999999988 77888884432 111111 2334444 333 899999988874 44 688
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
+|++..+.+.+ .....+ ..+..-+.|.|+|++++..+-.+ +++|.+|....... .+.
T Consensus 171 ~y~~~dg~L~~------~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~----------- 228 (346)
T COG2706 171 LYDLDDGKLTP------ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFE----------- 228 (346)
T ss_pred EEEcccCcccc------cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEE-----------
Confidence 99996444211 111111 23467789999999998877665 88999999985311 011
Q ss_pred EEEEEEEe----eccCCeEEEEEccCCCEEEEEec-CCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 336 IIHSVKVM----KINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 336 ~~~~~~~~----~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.++.+... .......+|.++++|++|.++.. ...|.++.+. ++.+.+.... .-+........|.+ +
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~------~ 301 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINP------S 301 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCC------C
Confidence 10001111 01345788999999998877653 2367777664 3443332222 22333456677777 4
Q ss_pred CcEEEEEECCC-cEEEE--ECCCCceEEe
Q 003360 409 KNFLVIATKDS-SVLVL--DSDNGNMLST 434 (826)
Q Consensus 409 ~~~l~sgs~Dg-~V~iw--d~~tg~~i~~ 434 (826)
+++|+++..++ +|.+| |..||++...
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 89999988766 45555 5567765543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00075 Score=74.41 Aligned_cols=170 Identities=12% Similarity=0.169 Sum_probs=101.6
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc--eee---cccccCCccee--eCCCCCEEE-EEECCCcEEEEeCC
Q 003360 192 DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP--LLD---FETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDVS 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~--~~~---~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~s 261 (826)
.+...++.|+|+++++++.. ...|.+|+..... +.. +..+...+-.. |+|+++++. +.-.+++|.++++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 36678999999999998865 4456776443221 221 11222222222 999998664 55567889999984
Q ss_pred --CCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 262 --CPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 262 --~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
...+..+..+..-.. .... .....|.++|++++|.++.. ++.|.+|++... ++....
T Consensus 223 ~~~g~~~~~~~~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~---------------~g~l~~- 283 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPE---GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA---------------TGTLTL- 283 (345)
T ss_dssp TTTTEEEEEEEEESCET---TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT---------------TTTEEE-
T ss_pred ccCCceeEEEEeeeccc---cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC---------------CCceEE-
Confidence 444333332221100 1111 36889999999999888765 568999999522 111111
Q ss_pred EEEEEeeccC-CeEEEEEccCCCEEEEEe-cCCeEEEEec--CCCeeEE
Q 003360 338 HSVKVMKING-SIISLNMNRNSQHLAVGS-DQGYVYLLDT--EGPTVLY 382 (826)
Q Consensus 338 ~~~~~~~~~~-~V~~l~~s~~g~~lasGs-~dG~V~vwD~--~~~~~l~ 382 (826)
+......+ ..+.++++|+|++|+++. .++.|.+|++ .++.+..
T Consensus 284 --~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 284 --VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp --EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred --EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 22222223 378999999999999887 5678999976 4666553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-07 Score=95.34 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=134.4
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--------CceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV--------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~--------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
...+|...|..++...+..-+++++ |+++++|..+. ....++ ..|+..|.+ |-.+-++++ +.||-|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~--ScD~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIA--SCDGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceee--eccCcc
Confidence 3467888888888877888888888 99999994321 122233 679999988 777766666 569999
Q ss_pred EEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 256 NFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 256 riWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
.+||. -+..+.. +... ...+++..+..-+ +..+++.| +...+|+++|-+.....
T Consensus 807 HlWDPFigr~Laq---~~da------pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~------------- 864 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQ---MEDA------PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT------------- 864 (1034)
T ss_pred eeecccccchhHh---hhcC------cccCCCceeEecccCcchheeeeccchhhheeeecccccce-------------
Confidence 99998 5544321 1110 1112333333333 33444444 77889999999854331
Q ss_pred CCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 332 GNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 332 ~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
+. ++.... ++-+.+++..+.|+++|.|-.+|.|.+.|.++|+++...+.. ......+ ..++
T Consensus 865 ---~E---~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllql-------aaps 928 (1034)
T KOG4190|consen 865 ---CE---LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQL-------AAPS 928 (1034)
T ss_pred ---ee---EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhh-------cCch
Confidence 11 222222 345999999999999999999999999999999988333210 0001111 1113
Q ss_pred CcEEEEEECCCcEEE-EECCCCceEEe
Q 003360 409 KNFLVIATKDSSVLV-LDSDNGNMLST 434 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~i-wd~~tg~~i~~ 434 (826)
.+.|+....|.++.+ |....|....+
T Consensus 929 dq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hHHHHhhcccceeEeeehhcCCeeeec
Confidence 667777778888888 88877765533
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.1e-05 Score=84.41 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=113.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++..+ ++ .+.+|+........+ ....+.+.. |+|+|+.|+ +...+| .|.+|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 445667788999999999988755 33 355555443333332 222333333 999999776 555566 47777
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+....|+|+++.++..+ .+|. |.+|++.++.. ..
T Consensus 273 d~~~~~~~~---lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------~~---------- 325 (430)
T PRK00178 273 DLASRQLSR---VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------ER---------- 325 (430)
T ss_pred ECCCCCeEE---cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------EE----------
Confidence 885554222 21 1223455678999998776555 4454 44445542211 10
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+.. .........|+|+|+.|+..+.+ | .|.+||+.++....... . .......|+| |+..+
T Consensus 326 ----lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~---~--~~~~~p~~sp------dg~~i 388 (430)
T PRK00178 326 ----VTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD---T--SLDESPSVAP------NGTML 388 (430)
T ss_pred ----eec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC---C--CCCCCceECC------CCCEE
Confidence 111 11223456899999999887653 3 58889998876442111 1 1122346777 57777
Q ss_pred EEEECC---CcEEEEECC
Q 003360 413 VIATKD---SSVLVLDSD 427 (826)
Q Consensus 413 ~sgs~D---g~V~iwd~~ 427 (826)
+..+.+ ..+.+++..
T Consensus 389 ~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 389 IYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEecCCceEEEEEECC
Confidence 766644 246777775
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-06 Score=85.97 Aligned_cols=165 Identities=17% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--C
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--S 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s 261 (826)
.++++++.|.+..+.|..+. .+++.-+.-. ...... ...|.+.|.. |+...+++++.+.|..+. |-- +
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~-~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~ 145 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD-YLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES 145 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh-hhhhhcceeeEEecCCceeEEEeccccceE-EEeecc
Confidence 35789999999999998888 6776655211 111111 2457777777 776777777777775543 321 1
Q ss_pred CCc--------------eeeee-------------eccc---ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 262 CPL--------------FLLIL-------------SLKQ---QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 262 ~~~--------------~~~i~-------------~l~~---~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+.. ....+ .+.. +....+.+|.+.|++++|.|..+.|.+|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 100 00000 0000 11223567889999999999999999999999999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
+..+.. .. .....|+..|..+..-+.-+.+.++++||.|.+||+...
T Consensus 226 igg~~g---------------~~-----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 226 IGGRKG---------------TA-----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccCCcc---------------ee-----eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 974422 22 444556778888888888888999999999999998654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-05 Score=76.26 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=133.7
Q ss_pred eCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc
Q 003360 202 TGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 276 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~ 276 (826)
-.+.+|+.|+ .+.+.+|.-........ ...|..+|.- ..-..--+..++.|.++++.+++++.. +.
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------~~--- 152 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------KF--- 152 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc------cc---
Confidence 3566777776 88899995443222211 2345555544 222233466678999999999966652 11
Q ss_pred cccccCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE
Q 003360 277 KDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM 354 (826)
Q Consensus 277 ~~~~~h~--~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~ 354 (826)
..|. -.+.+++++++++++++.+....|-.|.+......+.. .........=.+..|
T Consensus 153 ---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~------------------~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 153 ---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN------------------IYEAPTSDHGFYNSF 211 (344)
T ss_pred ---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee------------------eEecccCCCceeeee
Confidence 1232 23789999999999999999999999998744322100 111112233467789
Q ss_pred ccCCCEEEEEecCCeEEEEecCCCeeEEe--eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 355 NRNSQHLAVGSDQGYVYLLDTEGPTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 355 s~~g~~lasGs~dG~V~vwD~~~~~~l~~--~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+.....+|+++.||++.|||++.-..... ......|.+.+..+.|++. +. -.+|+..-.-+.+.+.|+++++-.
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~---g~-lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY---GL-LDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC---Cc-ceEEEEecCcceEEEEEcccCcee
Confidence 99888999999999999999987654421 1222358899999999973 21 356666666788999999998765
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
...
T Consensus 288 q~I 290 (344)
T KOG4532|consen 288 QVI 290 (344)
T ss_pred eEE
Confidence 543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00011 Score=83.90 Aligned_cols=202 Identities=9% Similarity=0.035 Sum_probs=113.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCc--EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGA--INFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGt--VriW 258 (826)
+..+...+....|+|||+.++..+ ++. +.+|+........+ ....+.... |+|+|+.|+ +...+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 344556788899999999988765 444 44444433222222 111222223 999999665 5677776 6666
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEE--eCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFK--LKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd--~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+...+|+|+++.|+..+. +|...||. +.++. ..
T Consensus 292 dl~tg~~~~---lt--------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-----------------~~ 343 (448)
T PRK04792 292 DIATKALTR---IT--------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-----------------VS 343 (448)
T ss_pred ECCCCCeEE---Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----------------EE
Confidence 775544211 21 23334567899999998766543 55555554 43221 11
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
. +.. ........+|+|+|++++..+. ++ .|.++|+.++....... .. ......|+| |+..|
T Consensus 344 ~---Lt~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~~--~d~~ps~sp------dG~~I 407 (448)
T PRK04792 344 R---LTF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---TR--LDESPSVAP------NGTMV 407 (448)
T ss_pred E---Eec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---CC--CCCCceECC------CCCEE
Confidence 0 111 1112345689999999887655 34 46667887776432111 11 112235777 57776
Q ss_pred EEEEC-CC--cEEEEECCCCceEEee
Q 003360 413 VIATK-DS--SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 413 ~sgs~-Dg--~V~iwd~~tg~~i~~~ 435 (826)
+..+. ++ .+++++.. |+....+
T Consensus 408 ~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 408 IYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred EEEEecCCceEEEEEECC-CCceEEC
Confidence 66554 33 36777764 6555443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-06 Score=82.23 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=106.8
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
++..+ ..|++.-++ .+-.++-+++|+.||.+-+.+... .++....+.. .| ..-.+.+++..+..+.++
T Consensus 81 ~~~~~-a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~-------~~-~~~as~~~~~~~~~i~s~ 150 (319)
T KOG4714|consen 81 PFKVL-AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPS-------IH-SGSASRKICRHGNSILSG 150 (319)
T ss_pred ceeee-eccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhccc-------cc-ccccccceeecccEEecC
Confidence 44444 245555555 666778899999999999999844 3212111110 01 111122333444444333
Q ss_pred eCCCc------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEe
Q 003360 302 DQSGM------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLD 374 (826)
Q Consensus 302 s~dg~------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD 374 (826)
.-|. .+.|+++.... . ....+.-..|++++-+|.. ..+++|++||.+-+||
T Consensus 151 -~~g~~n~~d~~~a~~~~p~~t----------------~-----~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d 208 (319)
T KOG4714|consen 151 -GCGNWNAQDNFYANTLDPIKT----------------L-----IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWD 208 (319)
T ss_pred -CcceEeeccceeeeccccccc----------------c-----cccccccccchhhhCCcccccEEEEecCCCeEEEEE
Confidence 2232 33444441110 0 0011112239999999864 4678899999999999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.++.... ..+...|..+++.+.|.|. ++..|++++.||.+.-||.. +.++.
T Consensus 209 ~rn~~~p--~S~l~ahk~~i~eV~FHpk-----~p~~Lft~sedGslw~wdas-~~~l~ 259 (319)
T KOG4714|consen 209 ARNVAMP--VSLLKAHKAEIWEVHFHPK-----NPEHLFTCSEDGSLWHWDAS-TTFLS 259 (319)
T ss_pred cccccch--HHHHHHhhhhhhheeccCC-----CchheeEecCCCcEEEEcCC-CceEE
Confidence 9988655 5556689999999999996 68899999999999999987 45554
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-05 Score=78.83 Aligned_cols=154 Identities=12% Similarity=0.188 Sum_probs=107.2
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|++.+.-++++-.+|.+.+-+.+...++. +...+.|..+.+...|+.. ..++.+|+.||.+..||++....
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~--------vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEK--------VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeee--------cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 88888889999999999965554433211 3345688899999999764 46889999999999999982110
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCee
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~ 395 (826)
..- -....|...|.++.-+| .+..+++|+.|-.|++||+| -++.++... ..+.|+
T Consensus 201 ----------------~i~---~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVW 257 (339)
T KOG0280|consen 201 ----------------FIW---HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVW 257 (339)
T ss_pred ----------------eee---ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceE
Confidence 000 11223566788888876 57789999999999999999 466664443 347899
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+.+.|... ...|+++-..| ++|.+...
T Consensus 258 Ri~~~p~~~----~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 258 RIKHHPEIF----HRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred EEEecchhh----hHHHHHHHhcC-ceEEEecc
Confidence 999999511 23344444343 66666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0027 Score=71.57 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcc--ee-eCCCCCEEEEEECCCcEEEEeCCCCceee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGS--QS-HSKVKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V--~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
.+.|..++|+.+|..+...- ||.|.+=......+... ..+|-. .+ |++|.+.++.+-.+|.+.++|..+...
T Consensus 115 KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-- 190 (1189)
T KOG2041|consen 115 KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-- 190 (1189)
T ss_pred ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcchheccceeecccHHHHHhhhcCCcEEEecccccHH--
Confidence 34577788888888777655 66554432211111110 011111 12 899999999999999999999866542
Q ss_pred eeecccccc----cccccCCCCeEEEEEe--------CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 268 ILSLKQQSE----KDFSLSGIPLTALYYD--------GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 268 i~~l~~~~~----~~~~~h~~~V~~l~fs--------p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
.+++.+.. ..+...+..|-.+.|. |+...|+++-..|.+.|-+-...+ .+.
T Consensus 191 -~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~----------------~Pv 253 (1189)
T KOG2041|consen 191 -RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP----------------EPV 253 (1189)
T ss_pred -HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC----------------CCe
Confidence 11221110 0011111235555553 577889999999988886654221 121
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
. +.. .-.|....|+++|..||+++.+
T Consensus 254 v---~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 V---VDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred E---Eec---ccEeecceecCCCcEEEEccCc
Confidence 1 111 2458889999999999998765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=80.94 Aligned_cols=158 Identities=12% Similarity=0.050 Sum_probs=95.9
Q ss_pred ccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCC
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQS 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~d 304 (826)
.+...+.. |+|+|+.|+..+.+ ..|.+||+.+..... +. .....+...+|+|+++.|+ +.+.+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~--------~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---IT--------NFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---cc--------CCCCCcCCeEECCCCCEEEEEEccC
Confidence 34455555 99999988776543 358888995544322 11 1112345689999998877 45556
Q ss_pred C--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCe
Q 003360 305 G--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPT 379 (826)
Q Consensus 305 g--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~ 379 (826)
| .|.+||+.++.. .....+........|+|+|+.++..+. +| .|+++|+.+++
T Consensus 265 g~~~Iy~~d~~~~~~----------------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 265 GNPEIYVMDLASRQL----------------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCceEEEEECCCCCe----------------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5 466677764321 111112334566789999998887664 33 57788887776
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-C--cEEEEECCCCce
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-S--SVLVLDSDNGNM 431 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g--~V~iwd~~tg~~ 431 (826)
..... . .+ .......|+| |+..|+..+.+ + .|.+||+.+|+.
T Consensus 323 ~~~lt-~-~~--~~~~~~~~Sp------dg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 323 AERVT-F-VG--NYNARPRLSA------DGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEee-c-CC--CCccceEECC------CCCEEEEEEccCCceEEEEEECCCCCE
Confidence 43111 1 11 1223456777 67887776643 3 578889887754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0011 Score=74.19 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=151.9
Q ss_pred CCeEEEec-CCcEEEeccCCCce-eecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccccc
Q 003360 204 NSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDF 279 (826)
Q Consensus 204 ~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~ 279 (826)
+..++.++ ++.+..++...... ..+ ...+.+.+ ...++..++.++.||.+..||. ++..+ .....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~--~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~------ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV--DLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL---WRAKL------ 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee--cCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe---eeecc------
Confidence 44555555 67777776433222 221 11222322 2335677888899999999999 45442 22210
Q ss_pred ccCCCCeEE-EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC
Q 003360 280 SLSGIPLTA-LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 358 (826)
Q Consensus 280 ~~h~~~V~~-l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 358 (826)
. ..+.+ ... .+..+++++.+|.|..||.+++... +.... .... ... ... .+.... +
T Consensus 134 --~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~-----W~~~~--~~~~-----~~~---~~~-~sp~~~-~- 190 (377)
T TIGR03300 134 --S-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL-----WTYSR--VTPA-----LTL---RGS-ASPVIA-D- 190 (377)
T ss_pred --C-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee-----eEEcc--CCCc-----eee---cCC-CCCEEE-C-
Confidence 0 11111 111 2456777888999999998855321 00000 0000 000 000 011111 2
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCC-CeeE---EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS-GIVS---LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~-~V~s---l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+++++.+|.+..+|..+++.++.......... .+.. +.-.|. ..+..+++++.+|.++.||..+|+.+-.
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 3688889999999999999998865432111100 0100 111111 1256788899999999999999987755
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeee-e
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKK-K 513 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~-~ 513 (826)
.... . ...+.. .++.+++...++.++.++.. ..+.+.+. .
T Consensus 267 ~~~~----~-~~~p~~-----------------------------~~~~vyv~~~~G~l~~~d~~-----tG~~~W~~~~ 307 (377)
T TIGR03300 267 RDAS----S-YQGPAV-----------------------------DDNRLYVTDADGVVVALDRR-----SGSELWKNDE 307 (377)
T ss_pred eccC----C-ccCceE-----------------------------eCCEEEEECCCCeEEEEECC-----CCcEEEcccc
Confidence 3210 0 000000 01223344445678888875 22233322 1
Q ss_pred cCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccc--eeecCCCCCCCcccceeccCCCcEEE
Q 003360 514 FHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRG--FVYLTPKPNSLSNTLMCSSWDGELIM 586 (826)
Q Consensus 514 ~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~--~~~~~~~~~~~~~~~~~~s~~G~i~~ 586 (826)
+. ..+.....+ .+..+.+...+|.+.+.+..+.+++...++.. +...| - .-..+.+..+.||.++.
T Consensus 308 ~~-~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~--~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 308 LK-YRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-V--VVGDGLLVQTRDGDLYA 375 (377)
T ss_pred cc-CCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-E--EECCEEEEEeCCceEEE
Confidence 11 112111111 23456666788999998887788777654432 22221 0 11234555556666554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00029 Score=77.49 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=141.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEe------cCCc-----
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS------ADED----- 214 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~------~d~~----- 214 (826)
..+++....+.+.+++..... .. +..-...+.++.|+|.+.+|.+- .++.
T Consensus 46 G~lfA~~~~~~v~i~~~~~~~-----------------~~--lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 46 GRLFAYSDNQVVKVFEIATLK-----------------VV--LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CcEEEEEcCCeEEEEEccCCc-----------------EE--EEeccceeeeeeecccccccccccccccccCCCCCCCc
Confidence 345666677777777766521 11 11111267889999999988661 1222
Q ss_pred EEEeccCCCcee-ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEE
Q 003360 215 YSLLAKSVPPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 215 i~~w~~~~~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
+.+|+....... .+....+.+ |+ |+.|..+.+ =-..+.|.||+... ... .. ..|...|+.+.
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~--~~----------kl~~~~i~~f~ 172 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI--QH----------KLSVSGITMLS 172 (566)
T ss_pred eeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCccce--ee----------eeeccceeeEE
Confidence 456655441111 111222222 34 777766432 22346799999933 221 11 24556889999
Q ss_pred EeCCC--CEEEE-----EeCCCcEEEEEeCCCCC--cc-ccce-----EEEeecCCCCeEE-------------------
Q 003360 291 YDGTS--RVLVS-----GDQSGMVRIFKLKYEPH--AI-ENSF-----LSFTGSKKGNSHI------------------- 336 (826)
Q Consensus 291 fsp~~--~~Las-----gs~dg~V~iwd~~~~~~--~~-~~~~-----~~i~~s~~~~~~~------------------- 336 (826)
++|.. ..+|+ ++.-+.|+||....... .. ..++ -.+.+++.++.+.
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 99873 34443 46667899999873210 00 0000 0122222222110
Q ss_pred EEE--------EEEeeccCCeEEEEEccCCCE--EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 337 IHS--------VKVMKINGSIISLNMNRNSQH--LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 337 ~~~--------~~~~~~~~~V~~l~~s~~g~~--lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
+|- ...+.-.++|.++.|+++|+- ++.|..=-.+.|+|++. .+++.+ ..++-.++-|+|.
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df-----~egpRN~~~fnp~---- 322 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF-----PEGPRNTAFFNPH---- 322 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC-----CCCCccceEECCC----
Confidence 000 111222789999999999954 45577788999999964 455333 2346677899995
Q ss_pred CCCcEEEEEECC---CcEEEEECCCCceEEee
Q 003360 407 FEKNFLVIATKD---SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 407 ~d~~~l~sgs~D---g~V~iwd~~tg~~i~~~ 435 (826)
|++|+.++-+ |.|-|||..+-+++..+
T Consensus 323 --g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 323 --GNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred --CCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 8888887754 68999999987777653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00018 Score=77.19 Aligned_cols=221 Identities=12% Similarity=0.148 Sum_probs=138.1
Q ss_pred CceEEEeccCccEEEecchh--HHHHHhhccCCCCCCCCccceeeecccCCCEEEEE-Ee-eCCCeEEEecCCcEEEecc
Q 003360 145 QDSFLLLGKSGHFYAFDDCQ--IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMK-LI-TGNSFILSSADEDYSLLAK 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~-fs-~~~~~l~~~~d~~i~~w~~ 220 (826)
+.--+|....|.|++||..+ ++++-...+ ...... ++..-.++..+. |+ .+|.+++..+.|..-+.+.
T Consensus 277 DGkrIvFq~~GdIylydP~td~lekldI~lp----l~rk~k----~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSLEKLDIGLP----LDRKKK----QPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcceeeecCCc----cccccc----cccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34458888999999999765 211111100 000000 000001111111 33 3677777777665555433
Q ss_pred CCCceeecccccCCccee--eCCCCCEEEEEECCC-cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 221 SVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG-AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 221 ~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
...... +.+|.++|.- +..+++-++.|..|| .+-|+|..+.+. ..+ ...-+.|.+|..+|+|..
T Consensus 349 ~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~--------e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 349 WDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRI--------EKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred CCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEe--------eCCccceEEEEEcCCCcE
Confidence 222222 3578888866 788888999999999 999999966652 111 223368999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC----eEEEE
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG----YVYLL 373 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG----~V~vw 373 (826)
++++.....+.++|+.++... +.-..-.+-|+...|+|+++++|.+.-+| .|+++
T Consensus 416 ~vvaNdr~el~vididngnv~---------------------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR---------------------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred EEEEcCceEEEEEEecCCCee---------------------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 999999999999999855321 11111134599999999999999876665 58999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
|+.++++.-... . ++-.|+|. ...|+++|...+.
T Consensus 475 dm~~~Kiy~vTT-~-------ta~DfsPa--FD~d~ryLYfLs~ 508 (668)
T COG4946 475 DMDGGKIYDVTT-P-------TAYDFSPA--FDPDGRYLYFLSA 508 (668)
T ss_pred ecCCCeEEEecC-C-------cccccCcc--cCCCCcEEEEEec
Confidence 999888763222 1 22345553 2226888877663
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00043 Score=79.08 Aligned_cols=156 Identities=10% Similarity=0.087 Sum_probs=91.8
Q ss_pred CCccee--eCCCCCEEEEEEC-CC--cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCc
Q 003360 233 KDGSQS--HSKVKNLFITGHS-DG--AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGM 306 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~-DG--tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~ 306 (826)
...+.+ |+|+|+.|+..+. ++ .|.+||+.+.....+.... ......+|+|+++.|+. .+.+|.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-----------g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-----------GINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-----------CCcCCeeECCCCCEEEEEEeCCCC
Confidence 444544 9999998876654 33 4778888544422211111 22346799999997764 566776
Q ss_pred --EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCeeE
Q 003360 307 --VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPTVL 381 (826)
Q Consensus 307 --V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~~l 381 (826)
|.+||+.++.. .+...+.......+|+|||++++..+. +| .|.++|+.+++..
T Consensus 286 ~~Iy~~dl~tg~~----------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 286 PEIYVVDIATKAL----------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred eEEEEEECCCCCe----------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 55556553221 111112334567899999998887664 33 4777788777643
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-C--cEEEEECCCCce
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-S--SVLVLDSDNGNM 431 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g--~V~iwd~~tg~~ 431 (826)
... . .+ .......|+| |+.+|+..+.+ + .|.++|+.+|+.
T Consensus 344 ~Lt-~-~g--~~~~~~~~Sp------DG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 344 RLT-F-EG--EQNLGGSITP------DGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEe-c-CC--CCCcCeeECC------CCCEEEEEEecCCceEEEEEECCCCCe
Confidence 211 1 11 1223457777 68777766543 3 456678776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0025 Score=71.27 Aligned_cols=195 Identities=15% Similarity=0.158 Sum_probs=103.8
Q ss_pred CCCeEEEec-CCcEEEeccCCCceeeccccc--CCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPLLDFETKL--KDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h--~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~ 277 (826)
++..++.+. ++.+..++....... |.+ .+.+.+ ..-.+..++.+..||.|..||. ++.. +...+....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~~~- 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGER---LWTYSRVTP- 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe---eeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCce---eeEEccCCC-
Confidence 355566655 888777765433322 221 222322 1113456777888999999999 4443 222221100
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+... .. .+.... +..++++..+|.|..+|.+++...- ..... +.+... .. .......+..+
T Consensus 177 ~~~~~-~~-~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W-----~~~~~~~~g~~~----~~--~~~~~~~~p~~-- 239 (377)
T TIGR03300 177 ALTLR-GS-ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW-----EQRVALPKGRTE----LE--RLVDVDGDPVV-- 239 (377)
T ss_pred ceeec-CC-CCCEEE--CCEEEEECCCCEEEEEEccCCCEee-----eeccccCCCCCc----hh--hhhccCCccEE--
Confidence 00000 00 011111 2467788888999999987553211 00000 000000 00 00000001111
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.+..+.+++.+|.++.||..+++.++..... . ..... . ++..+++++.||.|..+|..+|+.+-.
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~----~~~p~--~------~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S----YQGPA--V------DDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C----ccCce--E------eCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 2457888889999999999999988655421 1 11111 1 367888899999999999999987754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0018 Score=66.18 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=128.0
Q ss_pred EEEeeCCCeEEEecCCcEEEecc--CCCceeecccccCCccee-----eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 198 MKLITGNSFILSSADEDYSLLAK--SVPPLLDFETKLKDGSQS-----HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~--~~~~~~~~~~~h~g~V~~-----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
++.+.+|+.||.--|..|-+-.. +.........-.++.-+. |+||+.+||.++..|+|+++|+.+..+ +.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FV 79 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee---EE
Confidence 45677888887776666555422 211111110112222222 999999999999999999999977663 44
Q ss_pred cccccccccccCCCCeEEEEEeCC------CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGT------SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~------~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+........ .-..+|..|.|.+. ...|++-..+|.++=|-+..+....-...+. ..+..
T Consensus 80 I~p~~~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs--------------fsf~~ 144 (282)
T PF15492_consen 80 IPPAMSFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS--------------FSFSS 144 (282)
T ss_pred cCcccccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE--------------EEecc
Confidence 543211111 12267888888653 2367777788888888874332111011111 33332
Q ss_pred c-cCCeEEEEEccCCCEEEEEec----CC-------eEEEEecCCCeeEEeee--c------------------------
Q 003360 345 I-NGSIISLNMNRNSQHLAVGSD----QG-------YVYLLDTEGPTVLYQKH--I------------------------ 386 (826)
Q Consensus 345 ~-~~~V~~l~~s~~g~~lasGs~----dG-------~V~vwD~~~~~~l~~~~--~------------------------ 386 (826)
+ ...|+++.++|..++|++|+. ++ -+..|.+-+...-+..- .
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 2 456899999998888877753 11 24566654432221100 0
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.......|..|..+| |+..|++...+|.|.+|++.+-++....
T Consensus 225 ~~~~~d~i~kmSlSP------dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSP------DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cccCCCceEEEEECC------CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 011234566677777 7999999999999999999876666554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.013 Score=63.80 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=119.1
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--CCCceee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SCPLFLL 267 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~ 267 (826)
-...+++++|++++... +..+.+.+.....+... .+-.++..- .+....+ +-+.||+...... .+.. .
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~--~ 181 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNP--K 181 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCce--E
Confidence 34678999999999765 56788877655443332 111111111 1122211 2245555554333 2221 1
Q ss_pred eeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
............-....+ .|.+ +++++.+..+ |+|.+.|+..........+..+.+... +.....
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---------~~~wrP 247 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---------ADGWRP 247 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc---------ccccCC
Confidence 111110000000000112 4455 8888887777 999999986443211111111111100 001123
Q ss_pred CCeEEEEEccCCCEEEEEe----------cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGS----------DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIA 415 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs----------~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sg 415 (826)
+.+.-++++++++++.+.. ..+.|.++|..+++++..... ...+..++|++ |+. +|++.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~------Dgkp~lyvt 317 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQ------DAKPLLYAL 317 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECC------CCCeEEEEe
Confidence 4455599999999888853 124799999999999955543 34788999999 677 77766
Q ss_pred E-CCCcEEEEECCCCceEEee
Q 003360 416 T-KDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 416 s-~Dg~V~iwd~~tg~~i~~~ 435 (826)
. .++.|.++|..+++.+.+.
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 6 5788999999999999875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00087 Score=76.15 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=150.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC------------CEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS------------RVLVSGDQSG 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~------------~~Lasgs~dg 305 (826)
|++.| +||-|+.. .|-+-|. +.+. ...+..|...|+.|.|.|.. ..+|++...|
T Consensus 23 w~~~G-LiAygshs-lV~VVDs~s~q~-----------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 23 WSPSG-LIAYGSHS-LVSVVDSRSLQL-----------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cCccc-eEEEecCc-eEEEEehhhhhh-----------hhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 66655 56666553 6777787 4333 22345788999999998732 3688899999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc---CC-CEEEEEecCCeEEEEecCCCeeE
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR---NS-QHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~---~g-~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.|.+||+...... ..+..+..+|..++|-+ +. .+|+.-....+|.+|+..+|+.+
T Consensus 90 rIil~d~~~~s~~---------------------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 90 RIILVDFVLASVI---------------------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cEEEEEehhhhhh---------------------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence 9999999844221 23334566788888854 33 35666666778999999999998
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
+.... ......++.+.|. |...+...+..|.|.+-+.-.- ..+..++.- +++-..-..+ +..
T Consensus 149 Wk~~y---s~~iLs~f~~DPf-----d~rh~~~l~s~g~vl~~~~l~~-------sep~~pgk~--~qI~sd~Sdl-~~l 210 (1062)
T KOG1912|consen 149 WKYDY---SHEILSCFRVDPF-----DSRHFCVLGSKGFVLSCKDLGL-------SEPDVPGKE--FQITSDHSDL-AHL 210 (1062)
T ss_pred ecccc---CCcceeeeeeCCC-----CcceEEEEccCceEEEEeccCC-------CCCCCCcee--EEEecCccch-hhh
Confidence 65542 2335566888886 7888888888888777665410 011112222 2222110000 000
Q ss_pred cccccccc-cCC-----------CCCCCCCC-CCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCcee-eEeeee
Q 003360 462 NLSNVAGM-NKG-----------SPKENAVP-KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCW-ASTFYS 527 (826)
Q Consensus 462 ~~~~~~~~-~~~-----------~~~~~~~~-~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~-~~~~~~ 527 (826)
+.....+. ... .+. .+++ ....+++...+.+.||++. -..++..+.+. ..|.- ..++..
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~f-af~p~~rn~lfi~~prellv~dle-----~~~~l~vvpie-r~~akfv~vlP~ 283 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQF-AFSPHWRNILFITFPRELLVFDLE-----YECCLAVVPIE-RGGAKFVDVLPD 283 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhh-hcChhhhceEEEEeccceEEEcch-----hhceeEEEEec-cCCcceeEeccC
Confidence 00000000 000 000 1222 2567888889999999997 55677777664 55542 222222
Q ss_pred CCceEEEEEEeeceEEEec
Q 003360 528 GSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~s 546 (826)
+.-.+|.|+..||.+-+|-
T Consensus 284 ~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CCcceEEEEecCCeEEEEE
Confidence 7889999999999988774
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=87.79 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=128.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEe-ccCCCceeec----ccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLL-AKSVPPLLDF----ETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w-~~~~~~~~~~----~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.+..+..+.++|.|+.+++++ -+.+.+- +....+..-+ .|....--++.++...+-++......-.+|++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 346778889999999999988 4443332 2222122211 111000011134444555555555566789982211
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
-.. + +.-..+|+.+|+.+-|+|+. ..|++++.|-.|..||++.-.. .. ..+.
T Consensus 103 ~~a---I----ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------p~-----ys~~ 155 (1081)
T KOG0309|consen 103 SNA---I----EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------PF-----YSTS 155 (1081)
T ss_pred ccc---e----EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------------ce-----eeee
Confidence 000 1 11124677999999999986 5789999999999999984322 11 1222
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.-....+.++|+-....+.+.+....|++||++.+.-. .....+|...|.++.|... --..+++++.|++|+.
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~-----~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRF-----KYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhhh-----hhhhhcccCCCCceee
Confidence 22445667888875555666677778999999877644 2333467777888887653 2456889999999999
Q ss_pred EECCCC
Q 003360 424 LDSDNG 429 (826)
Q Consensus 424 wd~~tg 429 (826)
||....
T Consensus 229 w~y~kS 234 (1081)
T KOG0309|consen 229 WDYSKS 234 (1081)
T ss_pred eccccc
Confidence 998754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00074 Score=84.56 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=129.2
Q ss_pred EEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecc-ccc-----CCc-------c---ee--eCC-CCCEEEEEECCC
Q 003360 195 ITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFE-TKL-----KDG-------S---QS--HSK-VKNLFITGHSDG 253 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~-~~h-----~g~-------V---~~--~s~-~~~~l~Tgs~DG 253 (826)
-..+++.+++..++.+. ...|+.++........+. .+. .++ . +. +++ ++.++++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 46778888887666654 566777754333332220 010 011 0 11 777 677888889999
Q ss_pred cEEEEeCCCCceeeeeeccccc-cccccc------CCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 254 AINFWDVSCPLFLLILSLKQQS-EKDFSL------SGIPLTALYYDGTSRVL-VSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~-~~~~~~------h~~~V~~l~fsp~~~~L-asgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
.|++||........ +.... ...... .-...+.|+|+|++..| ++-+.++.|++||+.++.. ..
T Consensus 706 ~I~v~d~~~g~v~~---~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~------~~ 776 (1057)
T PLN02919 706 QIWEYNISDGVTRV---FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS------RL 776 (1057)
T ss_pred eEEEEECCCCeEEE---EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE------EE
Confidence 99999985443211 11000 000000 11356789999999854 4556678999999875421 11
Q ss_pred EeecCC-CCeEEEEEEEEee--------ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc---------
Q 003360 326 FTGSKK-GNSHIIHSVKVMK--------INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA--------- 387 (826)
Q Consensus 326 i~~s~~-~~~~~~~~~~~~~--------~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~--------- 387 (826)
+..... ..... ..++. .-.....++++++|.++++-+.+++|++||..++.+.......
T Consensus 777 ~~gg~~~~~~~l---~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNL---FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCccc---ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 110000 00000 00000 0112468899999998888889999999999888765322110
Q ss_pred -cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 388 -SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 388 -~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
...-.....+++++ ++.++++-+.+++|++||+.+++..
T Consensus 854 ~~a~l~~P~GIavd~------dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 854 LKAQLSEPAGLALGE------NGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred cccccCCceEEEEeC------CCCEEEEECCCCEEEEEECCCCccc
Confidence 01112456778877 5888888888999999999988753
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=81.09 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=98.9
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l 361 (826)
...|.++.|...+.++..|..+|.|..+|++..... .+.+ .....|...|++|..-. ++++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------~~~~-----a~rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------NGWC-----AQRLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------CCcc-----eEEEEcCcchhhhhhhccccceE
Confidence 367889999998999999999999999999965321 1111 44556788899998876 78899
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++.+.+|+|++||.+--++-.......+| |...++.|.... .+...+++++.|...+||.++.|.++.+.+.
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecc---cccccccccccc-cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99999999999999877662112222243 333444443222 2467788899999999999999999988643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=67.67 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=29.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
..|..|+.+||+..||+...+|.|.+|++-.
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 6899999999999999999999999999863
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-05 Score=85.20 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=115.6
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC--CCCcee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SCPLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.+|+..|.. --.+.+-+++++.|.+|++|.+ .+.... .-+... ...|..+|..+-|-.+.+.+++ .|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfT------Y~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFT------YQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeE------hhhccCcccceeeeeccceeee--cc
Confidence 678888877 3345667899999999999998 333311 012222 3468899999999998887765 57
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC---eEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS---IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~---V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
|-+.+||.-.+.... + +....-++. |.|+.--...-.+|.++...+|+++|.+.+...
T Consensus 804 ~giHlWDPFigr~La--------------q-----~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLA--------------Q-----MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred CcceeecccccchhH--------------h-----hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 889999976432210 0 000011222 334332112223344478899999999988765
Q ss_pred Eeeecc--cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 382 YQKHIA--SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 382 ~~~~~~--~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
...... .+.+.-+.+++..+. |+.++++-+.|+|.+.|.++|+.+.+.
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~------GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADK------GNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccC------cchhhHHhcCCcEEEEecCCCceeccC
Confidence 444432 344556888888874 999999999999999999999988764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=79.31 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=89.4
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC-----eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-----TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~-----~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+.|.++.|...+.+|..|+.+|.|.++|++.+ .+...+ -|.+.|+++.--.. ++++|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh~Ssvtslq~Lq~-----s~q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YHDSSVTSLQILQF-----SQQKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----EcCcchhhhhhhcc-----ccceEeeccCcC
Confidence 4677999999998999999999999999999875 122111 36678888776553 589999999999
Q ss_pred cEEEEECCCCce---EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEE
Q 003360 420 SVLVLDSDNGNM---LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACA 495 (826)
Q Consensus 420 ~V~iwd~~tg~~---i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv 495 (826)
+|++||.+--++ +.++.+|.+...... . .-.+.+++|++++++ ..||
T Consensus 322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~-~----------------------------~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLP-A----------------------------HVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred ceeEeeehhhhcccceeeeecccccccccc-c----------------------------ccccccceEEEccCeeEEEE
Confidence 999999997777 888888887632111 0 123456788888888 6999
Q ss_pred Eecc
Q 003360 496 YSLS 499 (826)
Q Consensus 496 ~sl~ 499 (826)
|++.
T Consensus 373 Wsl~ 376 (425)
T KOG2695|consen 373 WSLD 376 (425)
T ss_pred Eecc
Confidence 9998
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.03 Score=59.17 Aligned_cols=169 Identities=8% Similarity=0.037 Sum_probs=103.5
Q ss_pred cccCCCEEEEEEeeCCCeEEEec----CCcEEEec--cCCCceeec-ccccCCccee---eCCCCCEEEEE-ECCCcEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA----DEDYSLLA--KSVPPLLDF-ETKLKDGSQS---HSKVKNLFITG-HSDGAINF 257 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~--~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tg-s~DGtVri 257 (826)
-.+.+..+-++++++.+.|.++. ++.|..|. .....+.-. .....|.-+| .++++++++++ +.-|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 45556788899999999988854 34566553 221222211 1222333334 88999988877 45689999
Q ss_pred EeC-CCCceeee-eecccccccccccCC----CCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecC
Q 003360 258 WDV-SCPLFLLI-LSLKQQSEKDFSLSG----IPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 258 WD~-s~~~~~~i-~~l~~~~~~~~~~h~----~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+-+ ..+.+... ..+... .-..|. .-+.+..|.|++++|++.+- -..|.+|++..+.....
T Consensus 116 ~p~~~dG~l~~~v~~~~h~---g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~---------- 182 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHT---GSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA---------- 182 (346)
T ss_pred EEcccCCccccceeeeecC---CCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc----------
Confidence 998 43443221 112110 000111 22889999999999988754 34799999985433110
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCC
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGP 378 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~ 378 (826)
.. . ..+....-+.|.|+|++++..+-+ -+++|-+|.+...
T Consensus 183 --~~-----~-~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 183 --DP-----A-EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred --cc-----c-ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 00 1 112234468899999999876655 4899999999874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.013 Score=64.17 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=48.6
Q ss_pred cCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCC--------------
Q 003360 191 LDSSITAMKLITGNSFILSSADEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDG-------------- 253 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-------------- 253 (826)
..-+++.+++||.|.++++..-.-|.+|..... .+..+ .|. .|.- |+|.+++|.|-+.-+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--RHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee--ecC-CceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 445788899999999999887677888854331 22222 232 2333 999999999976544
Q ss_pred -cEEEEeCCCCc
Q 003360 254 -AINFWDVSCPL 264 (826)
Q Consensus 254 -tVriWD~s~~~ 264 (826)
.+.+||..++.
T Consensus 108 n~~~vwd~~sg~ 119 (561)
T COG5354 108 NNVFVWDIASGM 119 (561)
T ss_pred CceeEEeccCce
Confidence 38999984444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0013 Score=75.77 Aligned_cols=165 Identities=17% Similarity=0.209 Sum_probs=104.4
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCC-eEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIP-LTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~-V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
.+.|+++.+..++.|+.||.|-+.+-+.... . .+..+... |+.+....+..+|++-+.|+ .|+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~---~--------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLI---R--------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceee---e--------hheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 6777999999999999999999988754431 1 12233333 55555445556777766665 499
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEE---EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec---CCCeeEE
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV---KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT---EGPTVLY 382 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~---~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~---~~~~~l~ 382 (826)
||+++.-.... +.. +...|++ +......++++++.+.+-..+|+|..||.|..+.= |....
T Consensus 96 iw~lek~~~n~--sP~---------c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-- 162 (933)
T KOG2114|consen 96 IWDLEKVDKNN--SPQ---------CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-- 162 (933)
T ss_pred EecccccCCCC--Ccc---------eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--
Confidence 99998553211 011 1111111 12222567999999999999999999999987731 11111
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcE-EEEEECCCcEEEEECCCCce
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNF-LVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~-l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.....+....+||.+.|.. |+.. +++++ -..|.+|.+. |+.
T Consensus 163 r~~~~~~~~~pITgL~~~~------d~~s~lFv~T-t~~V~~y~l~-gr~ 204 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRS------DGKSVLFVAT-TEQVMLYSLS-GRT 204 (933)
T ss_pred ceeeeccCCCCceeeEEec------CCceeEEEEe-cceeEEEEec-CCC
Confidence 1233345678999999987 4554 55555 4458888877 443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=72.26 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=104.0
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
.++-++.+|.|.++......-. ..++.-+...+ ....-.++.|++.+..++++..+|.+.+-+...... .
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki--~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKI--SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL------E 156 (339)
T ss_pred eeeeccccceEEEEeeccceee--eeecccchhhh--hheeeeEEEeeccCceEEEEcCCCcEEEEecceeee------e
Confidence 6788899999999987433210 11221101111 111245778999999999999999988544431110 0
Q ss_pred EEeecCCCCeEEEEEEE-EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEee
Q 003360 325 SFTGSKKGNSHIIHSVK-VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.++ ...|.-.+....|+. +.++|.+|++||.+..||+|- ++.++. -...|...|.+|.-+|
T Consensus 157 --------------~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 157 --------------KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSP 220 (339)
T ss_pred --------------ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCC
Confidence 011 122344566677764 346899999999999999994 445533 2346888999999888
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECC-CCceE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSD-NGNML 432 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i 432 (826)
. .+.++++|+-|-.|++||.+ -|+.+
T Consensus 221 ~-----~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 221 P-----KPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred C-----CCceEEEeccccceeeeehhcccCcc
Confidence 4 57899999999999999998 45554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.6e-05 Score=74.11 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=91.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee-eCCCCCEEEEEEC-----CCcEEEEe
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS-HSKVKNLFITGHS-----DGAINFWD 259 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~-~s~~~~~l~Tgs~-----DGtVriWD 259 (826)
.|..+-.+-..+.-+..++++. |+.+.+..... .+..+ ..-|.+.... ....++.+.++.. -+..++|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeec
Confidence 3333333344455566667776 88777775443 11111 1112222222 3334455554432 12333444
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+. ++..+... ......|++++-+|. ..++++|+.||.|-+||++......
T Consensus 166 ~~-----p~~t~~~~-----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~------------------- 216 (319)
T KOG4714|consen 166 LD-----PIKTLIPS-----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV------------------- 216 (319)
T ss_pred cc-----cccccccc-----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------------------
Confidence 42 22222211 112246999999995 4678889999999999998442210
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~ 377 (826)
-.+..|+.++.-+-|+| ++..|.++++||.+.-||..+
T Consensus 217 -S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 217 -SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 11234577899999998 567899999999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.018 Score=62.31 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=132.6
Q ss_pred EeeCCCeEEEecCCcEEEeccCCCceeecccc--c----CC---ccee-----eC-CCCCEEEEEECCCcEEEEeC-CCC
Q 003360 200 LITGNSFILSSADEDYSLLAKSVPPLLDFETK--L----KD---GSQS-----HS-KVKNLFITGHSDGAINFWDV-SCP 263 (826)
Q Consensus 200 fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~--h----~g---~V~~-----~s-~~~~~l~Tgs~DGtVriWD~-s~~ 263 (826)
.+.||+.++-...|.|-+++.....+..+..+ . +. ..++ |+ .+|++++..+. |.+-|.+. .+.
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 46788887776667777775443322222111 0 01 1111 44 36888888776 56666555 232
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
. ++ -.|...|.-..+..++.-++.|..|| .+-|||.+++.. -+.
T Consensus 353 ~------iq-------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------kr~ 397 (668)
T COG4946 353 S------IQ-------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------KRI 397 (668)
T ss_pred e------EE-------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------EEe
Confidence 2 22 13556788889988888999999999 899999985432 223
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS--- 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--- 419 (826)
...-+.|-++..+++|++++++.....+-++|+.++.+...- ....+-|+.+.|+| ++.+++-+--+|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id---kS~~~lItdf~~~~------nsr~iAYafP~gy~t 468 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID---KSEYGLITDFDWHP------NSRWIAYAFPEGYYT 468 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec---ccccceeEEEEEcC------CceeEEEecCcceee
Confidence 334567999999999999999999999999999999876322 23455789999999 588888877776
Q ss_pred -cEEEEECCCCceEEe
Q 003360 420 -SVLVLDSDNGNMLST 434 (826)
Q Consensus 420 -~V~iwd~~tg~~i~~ 434 (826)
.|+++|+.+++....
T Consensus 469 q~Iklydm~~~Kiy~v 484 (668)
T COG4946 469 QSIKLYDMDGGKIYDV 484 (668)
T ss_pred eeEEEEecCCCeEEEe
Confidence 689999998776543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.015 Score=63.37 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeee---ecccccccccccCCCCeEEEEEeCCCCEEEEEeC----------CCcEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLIL---SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ----------SGMVR 308 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~---~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~----------dg~V~ 308 (826)
++.++.+... |+|.+-|+++....... .+... ...-......+.-++++|+++.+.+... .++|.
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~-~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA-EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeecccc-ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 7887777766 99999997443321111 11100 0000112345556999999998888532 24788
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
++|..+.+. +........+..|+++||++ +|.+.+ .++.|.|+|..+++.+.+.
T Consensus 283 ViD~~t~kv----------------------i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKR----------------------LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeE----------------------EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 888874432 44444456799999999999 777666 5788999999999888544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00054 Score=69.98 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=80.3
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC----ceeecccccC-----Cccee--eCCCCC-EEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP----PLLDFETKLK-----DGSQS--HSKVKN-LFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~----~~~~~~~~h~-----g~V~~--~s~~~~-~l~Tgs~DGtVr 256 (826)
..|.-.|..++|+.|...++++.|-.|.+|+.... .+... .||. .-|++ |+|... .+.-.+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 45666789999999999999998999999965431 11222 3332 23444 888654 666677889999
Q ss_pred EEeCCCCce-eeeeecc-----cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 257 FWDVSCPLF-LLILSLK-----QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 257 iWD~s~~~~-~~i~~l~-----~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+-|+....+ .--+++. .-...-+..--..|..+.|+++++++++-+. -+|+|||++..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 999842221 0001111 0001112222278899999999999987654 48999999854
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0013 Score=74.67 Aligned_cols=173 Identities=7% Similarity=-0.065 Sum_probs=98.3
Q ss_pred CCEEEEEEeeCCCeEEEec--CC----cEEEeccCC---CceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEEeC
Q 003360 193 SSITAMKLITGNSFILSSA--DE----DYSLLAKSV---PPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~----~i~~w~~~~---~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~ 260 (826)
......+|+|||+.|+..+ ++ .+..|+... ...........+.... |+|||+.|+..+ .+|..+||.+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 3345578999999988754 23 233353221 1112221111122222 999999777655 5787777754
Q ss_pred --C--CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 261 --S--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---GMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 261 --s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d---g~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
. +... ..+ ..+...+....|+|+++.|+..+.+ ..|.+||+.++..
T Consensus 311 ~~~~~g~~~---~~l--------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---------------- 363 (428)
T PRK01029 311 QIDPEGQSP---RLL--------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---------------- 363 (428)
T ss_pred ECcccccce---EEe--------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------------
Confidence 2 1211 111 1223456788999999988876543 3688888874432
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.........+....|+|||+.|+.... .+.|.+||+.+++...... ....+...+|+|.
T Consensus 364 ------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~----~~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 ------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI----GSGEKRFPSWGAF 425 (428)
T ss_pred ------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCcccCceecCC
Confidence 111111234677899999998876543 3568899998776542221 2233445666663
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=57.42 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=33.5
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEe
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 42 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd 42 (826)
..+.++..+...|.+++|+ |++.+||+|+.||.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 3456677889999999995 7999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=81.00 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=81.9
Q ss_pred eCCCCCEEEEEEC----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 239 HSKVKNLFITGHS----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~~~~~l~Tgs~----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
|||...++++++- .|+|.||--++... ..+. ....+++++|+|..-.|++|..-|.+.+|....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPq---r~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQ---RDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCC---cccc---------cceehhhhccChHHHHHhhccccceeEEEecCC
Confidence 9999999998874 58999986544321 1122 123567899999999999999999999999873
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+ .+ -....|+.+|..+.||++|..++++..-|.|.+|.+.
T Consensus 91 ~e-----------------~h----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TE-----------------TH----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ce-----------------ee----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22 22 2334578899999999999999999999999999875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00021 Score=75.72 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=66.9
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
.+|-.-++.|+|+||+++++++..|..||+-.+..-... + --...|..-|..++.-++.
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I------------e--------sfclGH~eFVS~isl~~~~- 206 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI------------E--------SFCLGHKEFVSTISLTDNY- 206 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch------------h--------hhccccHhheeeeeeccCc-
Confidence 567789999999999999999999999999877521110 0 1123466779999998877
Q ss_pred EEEEEecCCeEEEEecCCCeeEEee
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
.|++|+.|++|++||+++++++.+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeeecCCCCcEEEEecccCCccccc
Confidence 5999999999999999999988444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.3e-05 Score=54.66 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=31.2
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+..|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457889999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.048 Score=61.33 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=66.5
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
+...++++.|.|.+++|+...++.|+.||+|.+||...+...+. ...-.++.++|+| +|.++++|+.-|
T Consensus 253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp------~gai~~V~s~qG 321 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHP------DGAIFVVGSEQG 321 (545)
T ss_pred EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcC------CCcEEEEEcCCc
Confidence 55667789999999999999999999999999999977754422 2234577899999 699999999999
Q ss_pred cEEEEECCCCc
Q 003360 420 SVLVLDSDNGN 430 (826)
Q Consensus 420 ~V~iwd~~tg~ 430 (826)
.+.+||..-+-
T Consensus 322 elQ~FD~ALsp 332 (545)
T PF11768_consen 322 ELQCFDMALSP 332 (545)
T ss_pred eEEEEEeecCc
Confidence 99999987443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.014 Score=70.28 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=105.9
Q ss_pred Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 234 DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 234 g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+.|.+ |..+.+-|+.+..+|.|.+-|.....+..+ ..-...|.+++|+||..+|+..+..++|.+-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-----------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-----------GNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee-----------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 34555 777788888899999999998855442221 11236899999999999999999988887654
Q ss_pred eCCC----CCc-----cccceEEEeecCCCCeEEEEE-----------EEEee---ccCCeEEEEEccCCCEEEEE----
Q 003360 312 LKYE----PHA-----IENSFLSFTGSKKGNSHIIHS-----------VKVMK---INGSIISLNMNRNSQHLAVG---- 364 (826)
Q Consensus 312 ~~~~----~~~-----~~~~~~~i~~s~~~~~~~~~~-----------~~~~~---~~~~V~~l~~s~~g~~lasG---- 364 (826)
-.-. ... ....+..+-|.+..++..... .+... ....=++++|--||.++|+.
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 3211 000 001122333333333321100 00001 12334679999999999983
Q ss_pred -ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE---ECCCcEEEEECCCCceEEee
Q 003360 365 -SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA---TKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 365 -s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg---s~Dg~V~iwd~~tg~~i~~~ 435 (826)
.....|+|||.. +.+-.+. .....--.++.|.|. |..+++- ++|+.|.++..+ |-.-..|
T Consensus 218 ~~~~RkirV~drE-g~Lns~s---e~~~~l~~~LsWkPs------gs~iA~iq~~~sd~~IvffErN-GL~hg~f 281 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTS---EPVEGLQHSLSWKPS------GSLIAAIQCKTSDSDIVFFERN-GLRHGEF 281 (1265)
T ss_pred cCCceeEEEeccc-chhhccc---CcccccccceeecCC------CCeEeeeeecCCCCcEEEEecC-Ccccccc
Confidence 333789999987 4322111 111222345888883 7666654 356678888855 6554444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0016 Score=74.76 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
.++.++-|+.+|.|++.+..+... . . -.|... .-+|.+++||+.||+|.|..+-+....
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~-~---~--------~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPK-T---N--------FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred hcceeeeccccceEEEEecCCccc-c---c--------cccccc------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 347899999999999999855421 0 0 012211 567999999999999999887644321
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-----CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.....+.++.+++++|+ .+.+++|+.-| +.++.-+=..-.-.. ..+...++|.+
T Consensus 107 -------------------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~ 165 (846)
T KOG2066|consen 107 -------------------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHS 165 (846)
T ss_pred -------------------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEE
Confidence 11223668999999998 46799999998 656543211000000 12356789999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKE 476 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (826)
+.|. +++++=++.+| |+|||..+++.+... .++....-.. .-+..
T Consensus 166 i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e------------------------~fpph 210 (846)
T KOG2066|consen 166 IKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPE------------------------LFPPH 210 (846)
T ss_pred EEec--------CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcc------------------------cCCCc
Confidence 9996 55666666555 999999988877653 2221110000 00011
Q ss_pred CCCCCCCEEEEeecCcEEEEecc
Q 003360 477 NAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 477 ~~~~~~~~vv~~se~~irv~sl~ 499 (826)
....++..+|++-.++|+|+++.
T Consensus 211 l~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 211 LHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred eEecCCCeEEEecCCeEEEEEEe
Confidence 22334567778888899999987
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=70.79 Aligned_cols=222 Identities=14% Similarity=0.234 Sum_probs=134.4
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC------ceeecccccCC------------ccee---eCCCC-CEEEE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVP------PLLDFETKLKD------------GSQS---HSKVK-NLFIT 248 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~------~~~~~~~~h~g------------~V~~---~s~~~-~~l~T 248 (826)
..-|+++.|-..|.++++|. .|.|.++..... .+..| .+|.- .|.. +.+.+ ..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45799999999999999998 788888832211 11112 22322 2222 33333 35666
Q ss_pred EECCCcEEEEeCCCCceeee--------------------eeccc-------------ccccccccCCCCeEEEEEeCCC
Q 003360 249 GHSDGAINFWDVSCPLFLLI--------------------LSLKQ-------------QSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i--------------------~~l~~-------------~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
.+.|.+|++|.+..+.+..+ ..+.- +.......|..-|.+++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998732211000 00000 0000124566789999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-----cCCeEEEEEccC-CCEEEEEecCCe
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-----NGSIISLNMNRN-SQHLAVGSDQGY 369 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-----~~~V~~l~~s~~-g~~lasGs~dG~ 369 (826)
..++++ .|=.|.+|++... |+...+ +...++ ..-|++..|+|. ...+...+..|.
T Consensus 185 et~lSa-DdLrINLWnl~i~---------------D~sFnI---VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEII---------------DGSFNI---VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred heeeec-cceeeeecccccc---------------CCceEE---EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 888876 5668999998732 111111 111122 234888999985 456777888999
Q ss_pred EEEEecCCCeeE------Eeeec-------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEee
Q 003360 370 VYLLDTEGPTVL------YQKHI-------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLSTN 435 (826)
Q Consensus 370 V~vwD~~~~~~l------~~~~~-------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~ 435 (826)
|++-|+|+..+. +...+ ..+..+.|..+.|++ +++++++- .--+|+|||.+..+ ++.+.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~------ngryIlsR-dyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD------NGRYILSR-DYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC------CCcEEEEe-ccceEEEEecccccCCceee
Confidence 999999965433 11111 112235677888998 36676654 34589999998643 77776
Q ss_pred eccCC
Q 003360 436 LIHPK 440 (826)
Q Consensus 436 ~~~~~ 440 (826)
++|..
T Consensus 319 ~~h~~ 323 (460)
T COG5170 319 PMHCD 323 (460)
T ss_pred chHHH
Confidence 55543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=76.67 Aligned_cols=252 Identities=13% Similarity=0.084 Sum_probs=150.6
Q ss_pred cCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 003360 232 LKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRI 309 (826)
Q Consensus 232 h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~i 309 (826)
|..-|+. +..--+++++++.||.+++|--+.-.. +++ +..+..|-..|.+++.+-++.++++.+. |..+++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isG-----vEf--VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISG-----VEF--VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccc-----eee--hhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 4555555 555668999999999999998743110 000 1223456678888999999999999777 999999
Q ss_pred EEeCCCCCcc-------cc----------ceEEEeec--CCCCeEEEEE--------EEEeeccCCeEEEEEccCCCEEE
Q 003360 310 FKLKYEPHAI-------EN----------SFLSFTGS--KKGNSHIIHS--------VKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 310 wd~~~~~~~~-------~~----------~~~~i~~s--~~~~~~~~~~--------~~~~~~~~~V~~l~~s~~g~~la 362 (826)
||+..-.... +. .+..++.+ +.+....+.+ ..-..|..+|.++.+++.+..++
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred EEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 9997542110 00 01111111 1222222111 23345678899999999999999
Q ss_pred EEecCCeEEEEecCC------CeeEEeeecc------cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 363 VGSDQGYVYLLDTEG------PTVLYQKHIA------SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 363 sGs~dG~V~vwD~~~------~~~l~~~~~~------~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+....|.|.-|.... ..+.+..... .......++++|+| ++..+.+-+.|..|++++..+|+
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp------~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP------DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc------ccCcccccCcccEEEEEEeccch
Confidence 999999999998863 1122111100 11234578899999 58888888899999999999999
Q ss_pred eEEeeeccCC----CCCcceEEEEecCCCCcccCccccccccccCC-CCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 431 MLSTNLIHPK----KPSRALFMQILNGQDGLARGANLSNVAGMNKG-SPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 431 ~i~~~~~~~~----~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.+..+.-... .+-....|.-++= + ..-+-++.+.+.... .....|...+.|++-.+--.|+|+++.
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~Vel--g-RRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~ 305 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVEL--G-RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLD 305 (558)
T ss_pred hhhhhhccchhhhhccccccccceeeh--h-hhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEee
Confidence 8765421100 0000111111110 0 000111222221100 011146667889988888889999886
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0031 Score=63.51 Aligned_cols=195 Identities=12% Similarity=-0.010 Sum_probs=112.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~ 223 (826)
..+.+++..|++-+|...+-+..+ .....|...|+-+.=..+. -.+..++ |.++++......
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~----------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHL----------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcccce----------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence 456677788888888776522111 1112233333322222211 1223344 777776643221
Q ss_pred ceeecccccCCc--cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 224 PLLDFETKLKDG--SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 224 ~~~~~~~~h~g~--V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.... .-|... +.+ .+++++++++.+....|-+|.+.......+. +. + ....+.=.+.+|+.....+|
T Consensus 149 s~~~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~---~---a~t~D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 149 SNKF--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY---E---APTSDHGFYNSFSENDLQFA 219 (344)
T ss_pred cccc--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eE---e---cccCCCceeeeeccCcceEE
Confidence 1110 112222 223 8999999999999999999998332211111 11 1 11123446889999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC--EEEEEecCCeEEEEecCC
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ--HLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~lasGs~dG~V~vwD~~~ 377 (826)
++..||++.|||++.....+ ..+ +.. -..|++.+..+.|++-|. +|...-.-+.+.|.|+++
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm----~~~--sst----------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPM----AEI--SST----------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred EEecCCcEEEEEecccccch----hhh--ccc----------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 99999999999998432211 000 000 112588899999998553 455555567899999998
Q ss_pred CeeE
Q 003360 378 PTVL 381 (826)
Q Consensus 378 ~~~l 381 (826)
+.-.
T Consensus 284 ~~~~ 287 (344)
T KOG4532|consen 284 YVNH 287 (344)
T ss_pred Ccee
Confidence 8644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00079 Score=75.61 Aligned_cols=252 Identities=14% Similarity=0.081 Sum_probs=150.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCC-CccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSA-PKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~-~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~ 222 (826)
.++.+++.+|.|-+.-..+-..- .+.+..... .-....++.+|...|..+.|+.+.+.|-++. +|.|.+|-. +.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d---~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTD---LNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred CeEEeccccceeEEEEccccCCc---ccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence 45566777787777644331100 011110010 1122346789999999999999999988877 999999932 33
Q ss_pred Cceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 223 PPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 223 ~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.|...+... .+.-|.+ |..+|..|.....||.|.+=.+.+... --+.++ +.-...+.|++|.+.++
T Consensus 104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLk----------g~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELK----------GQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcc----------hheccceeecccHHHHH
Confidence 455555222 3344444 999999999999999998777755541 001122 12345788999999999
Q ss_pred EEeCCCcEEEEEeCCCCCc--cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--------ccCCCEEEEEecCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHA--IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--------NRNSQHLAVGSDQGY 369 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~--~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--------s~~g~~lasGs~dG~ 369 (826)
-+-..|...+||...+... +-+....+++. +......|-.+.| -|+...+|+++.+|.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~------------~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGI------------FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeee------------ecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 9999999999998765210 00000000000 0000112344444 357778999999999
Q ss_pred EEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---------cEEEEECCCCceEEee
Q 003360 370 VYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---------SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 370 V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---------~V~iwd~~tg~~i~~~ 435 (826)
+.|..-.+ +..+. . ...-.|....|++ +|..|++++.|. .|.++..- |+.+.++
T Consensus 241 ~QiMR~eND~~Pvv-~----dtgm~~vgakWnh------~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtl 304 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVV-V----DTGMKIVGAKWNH------NGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTL 304 (1189)
T ss_pred ehhhhhcCCCCCeE-E----ecccEeecceecC------CCcEEEEccCcccccCccccceEEEeccc-hhheEEE
Confidence 87764332 22110 1 1123566778888 488888888654 46666655 6655554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.022 Score=71.54 Aligned_cols=220 Identities=12% Similarity=0.135 Sum_probs=118.4
Q ss_pred EEEEEeeCC-CeEEEec-CCcEEEeccCCCceeeccc-c---cCCcc---------ee--eCCCCC-EEEEEECCCcEEE
Q 003360 196 TAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDFET-K---LKDGS---------QS--HSKVKN-LFITGHSDGAINF 257 (826)
Q Consensus 196 t~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~~~-~---h~g~V---------~~--~s~~~~-~l~Tgs~DGtVri 257 (826)
..+++.+++ ...++-. .+.|.+|+........+.. + ...|. .. +.++++ ++++-..++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 356777654 4444444 6778888654433222211 1 11110 11 666666 4555566788999
Q ss_pred EeCCCCceeeeeeccccccc--cccc------C-CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 258 WDVSCPLFLLILSLKQQSEK--DFSL------S-GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~--~~~~------h-~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+|..+... ..+...... .... . -..-+.|+|+| ++.++++.+.++.|++||...+.. ..+
T Consensus 651 id~~~~~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v------~~~- 720 (1057)
T PLN02919 651 IDFVNETV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT------RVF- 720 (1057)
T ss_pred EecCCCEE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE------EEE-
Confidence 99855442 112110000 0000 0 12346899999 456667777788999999864321 111
Q ss_pred ecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCCeeEEeee-----------cc--cC---
Q 003360 328 GSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGPTVLYQKH-----------IA--SD--- 389 (826)
Q Consensus 328 ~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~~~l~~~~-----------~~--~~--- 389 (826)
..++......+ ......-.....|+++|+|..| ++-+.++.|++||+.++....... .. .+
T Consensus 721 -~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 -SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred -ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 11111000000 0000011236789999999844 555667999999998765321110 00 00
Q ss_pred --CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 390 --ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 390 --~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.-.....++|.+ ++.++++-+.+++|++||..++...
T Consensus 800 ~~~l~~P~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 800 EVLLQHPLGVLCAK------DGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred hhhccCCceeeEeC------CCcEEEEECCCCEEEEEECCCCeEE
Confidence 001234667766 5777778888999999999876654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=74.46 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=114.2
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILS 270 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~ 270 (826)
..++|++++ ++.++.|. +|.+.+..........+ .|.. ....|++++||+.||+|.|-.+ +.+.. .+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~--~~s~----~~~~Gey~asCS~DGkv~I~sl~~~~~~---~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNF--DHSS----SILEGEYVASCSDDGKVVIGSLFTDDEI---TQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcccccc--cccc----cccCCceEEEecCCCcEEEeeccCCccc---ee
Confidence 345555544 35566666 77777765443221111 1111 2457899999999999999988 44441 11
Q ss_pred cccccccccccCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGT-----SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~-----~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. -..++.+|+++|+ ++.+++|+.-| |.++.-+--.. ++ . +.....
T Consensus 109 ~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn------------k~--~-----v~l~~~ 159 (846)
T KOG2066|consen 109 YD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN------------KD--S-----VVLSEG 159 (846)
T ss_pred Ee---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC------------cc--c-----eeeecC
Confidence 11 1258999999998 67899999999 77775331000 00 1 223334
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC---CCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI---SSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~---~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|+|.++.|. |.++|-++++| |+|+|+...+.+......... ..-...+.|.+ ...|+.| +..+|+
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-------~~~LVIG-W~d~v~ 228 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-------EDRLVIG-WGDSVK 228 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-------CCeEEEe-cCCeEE
Confidence 7899999997 66899999998 699999998888444332211 01122345544 4555554 455677
Q ss_pred EEECC
Q 003360 423 VLDSD 427 (826)
Q Consensus 423 iwd~~ 427 (826)
|..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 77776
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.007 Score=70.07 Aligned_cols=212 Identities=14% Similarity=0.148 Sum_probs=132.6
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCc-cee-eCCCC-CEEEEEECCCc-----EEEEeCC---
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDG-SQS-HSKVK-NLFITGHSDGA-----INFWDVS--- 261 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~-V~~-~s~~~-~~l~Tgs~DGt-----VriWD~s--- 261 (826)
.|+| +++.+..++.|. +|.|.+++.+......+ ..+..+ |.. +.-++ ++|++-+.|+. |+|||+.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 577788888888 99999888776554555 445555 444 44444 68888777754 8999992
Q ss_pred CCc-eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPL-FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
... .++++..+-.. ..+.....++++++.+.+-..+|+|-.+|.|..+.=.--.. .+... .
T Consensus 104 ~n~sP~c~~~~ri~~-~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-------------rgsr~----~ 165 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFT-IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-------------RGSRQ----D 165 (933)
T ss_pred CCCCcceeeeeeeec-cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-------------cccce----e
Confidence 112 22332222110 00112347899999999999999999999998875321110 11110 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
-......+||.|++..++..++....-..|.+|.+.+.... ....+.+..++.|..|++. ...+++++ +..
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~--~~~ld~~G~~lnCss~~~~------t~qfIca~-~e~ 236 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS--LKVLDNNGISLNCSSFSDG------TYQFICAG-SEF 236 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc--eeeeccCCccceeeecCCC------CccEEEec-Cce
Confidence 12233678999999999987444444557899999765533 2334567778888888873 33355554 456
Q ss_pred EEEEECCCCceEEee
Q 003360 421 VLVLDSDNGNMLSTN 435 (826)
Q Consensus 421 V~iwd~~tg~~i~~~ 435 (826)
+.+|+...-+.-.++
T Consensus 237 l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 237 LYFYDSDGRGPCFAF 251 (933)
T ss_pred EEEEcCCCcceeeee
Confidence 899998743333344
|
|
| >PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.3e-05 Score=65.11 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=43.5
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
......-+++.||||||+.|++||++|+++|+.|.+-|++|-++|.-+
T Consensus 17 ~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 17 NIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556667789999999999999999999999999999999999988644
|
Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.012 Score=70.83 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=115.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV- 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~- 222 (826)
+..+++.+..|.+++.|..+. ...-+...+..|.+++|+||...++... ++++.+.....
T Consensus 80 ~~~i~v~~~~G~iilvd~et~------------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 80 TNSICVITALGDIILVDPETL------------------ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEecCCcEEEEccccc------------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 467889999999999876662 1122456778999999999999998876 66665542110
Q ss_pred --------------Cceeecccc------------------------------cCCccee-eCCCCCEEEEE-----ECC
Q 003360 223 --------------PPLLDFETK------------------------------LKDGSQS-HSKVKNLFITG-----HSD 252 (826)
Q Consensus 223 --------------~~~~~~~~~------------------------------h~g~V~~-~s~~~~~l~Tg-----s~D 252 (826)
.......|+ +.+.+.- |.-||+++|+. ..-
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 001111122 1111112 88899999883 222
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
..|||||-.+... . .. + ....-=.+++|-|.|..+++- ..|+.|.+|.-++-..
T Consensus 222 RkirV~drEg~Ln-s---~s---e----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h------------ 278 (1265)
T KOG1920|consen 222 RKIRVYDREGALN-S---TS---E----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH------------ 278 (1265)
T ss_pred eeEEEecccchhh-c---cc---C----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc------------
Confidence 7999999863221 1 00 0 011233589999999888875 3345788877542211
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE---EecCCeEEEEecCCCe
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV---GSDQGYVYLLDTEGPT 379 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las---Gs~dG~V~vwD~~~~~ 379 (826)
|... +........|..|+|+.++..||+ ......|.+|-+.+..
T Consensus 279 --g~f~----l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 279 --GEFV----LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred --cccc----cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 1000 222222344999999999999988 5555569999987654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0009 Score=75.55 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=139.6
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKSV 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~ 222 (826)
.++-+|.+++..-++|+.+.- . .+...+.+.+|...|+.+.|.+..+.+ ++++ |-.+..|+.+.
T Consensus 81 ~~~wiVsts~qkaiiwnlA~s-------s-------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKS-------S-------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred CceeEEecCcchhhhhhhhcC-------C-------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 355678888888788887651 0 223445678999999999999977654 5567 99999998877
Q ss_pred Cceeecccc--cCCccee-eC-CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCC-CC
Q 003360 223 PPLLDFETK--LKDGSQS-HS-KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SR 296 (826)
Q Consensus 223 ~~~~~~~~~--h~g~V~~-~s-~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~ 296 (826)
+...-+.+. |++.-.- |+ .+++.+|+.| ..-|++||. .+.. +++.++ .|-..|..++|..- -.
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlassh-g~~i~vwd~r~gs~--pl~s~K--------~~vs~vn~~~fnr~~~s 215 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSH-GNDIFVWDLRKGST--PLCSLK--------GHVSSVNSIDFNRFKYS 215 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhcc-CCceEEEeccCCCc--ceEEec--------ccceeeehHHHhhhhhh
Confidence 543333221 3333322 54 4555666544 458999999 3333 334454 46667888888653 24
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-----------EEEEEe
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-----------HLAVGS 365 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-----------~lasGs 365 (826)
.+.+++.||+|+.|+..+......-.+ ..+.+|.--.+-|-|. .+-.--
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~v--------------------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTV--------------------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred hhcccCCCCceeeecccccccccceec--------------------cccCcceeccccccCceeEeccccCCeeeeecc
Confidence 678899999999999985533210000 0122233333333222 111111
Q ss_pred cCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccC--CCC--CcEEEEEECCCcEEEEECCC
Q 003360 366 DQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQ--GFE--KNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 366 ~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~--~~d--~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+..-..|+..+ .+.++++ .+|...|....|...-.. .+| .-.|++=+.|.++++|.+.+
T Consensus 276 c~n~d~e~n~~~~~~pVh~F---~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 276 CENSDLEWNVFDLNTPVHTF---VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccchhhhhccccCCcceeee---cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122223333322 2344444 378888876666543111 112 34799999999999999873
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.079 Score=55.24 Aligned_cols=215 Identities=10% Similarity=0.097 Sum_probs=118.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEe-eCCCeEEEecCCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI-TGNSFILSSADEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs-~~~~~l~~~~d~~i~~w~~~~~~ 224 (826)
..+++-...|+|+.||...- .... +.. +....+.+. +++..+++...+... ++.....
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~----------------~~~~--~~~--~~~~G~~~~~~~g~l~v~~~~~~~~-~d~~~g~ 71 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTG----------------EVEV--IDL--PGPNGMAFDRPDGRLYVADSGGIAV-VDPDTGK 71 (246)
T ss_dssp EEEEEETTTTEEEEEETTTT----------------EEEE--EES--SSEEEEEEECTTSEEEEEETTCEEE-EETTTTE
T ss_pred EEEEEEcCCCEEEEEECCCC----------------eEEE--Eec--CCCceEEEEccCCEEEEEEcCceEE-EecCCCc
Confidence 33445556788888887661 0111 111 225566676 565555554444433 3433333
Q ss_pred eeecccc-----cCCccee--eCCCCCEEEEEECC--------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEE
Q 003360 225 LLDFETK-----LKDGSQS--HSKVKNLFITGHSD--------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 225 ~~~~~~~-----h~g~V~~--~s~~~~~l~Tgs~D--------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
...+... ....... +.++|++++|-... |.|..++..+........ -...+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~------------~~~pNGi 139 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADG------------LGFPNGI 139 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEE------------ESSEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecC------------cccccce
Confidence 3333111 1111222 89999988887755 456666665222111111 1356899
Q ss_pred EEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC
Q 003360 290 YYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG 368 (826)
Q Consensus 290 ~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG 368 (826)
+|+|+++.|++ -+..+.|..|++...... +.. ...+ .......+..-.+++..+|.+.++....+
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~--------~~~~--~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSN--------RRVF--IDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCC----EEE--------EEEE--EE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred EECCcchheeecccccceeEEEeccccccc----eee--------eeeE--EEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 99999987764 456677888887632210 000 0000 01111122378899999999888888899
Q ss_pred eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 369 YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 369 ~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
.|.++|.. ++++....+. ...+++++|.-. +...|++.+
T Consensus 206 ~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~-----~~~~L~vTt 244 (246)
T PF08450_consen 206 RIVVFDPD-GKLLREIELP---VPRPTNCAFGGP-----DGKTLYVTT 244 (246)
T ss_dssp EEEEEETT-SCEEEEEE-S---SSSEEEEEEEST-----TSSEEEEEE
T ss_pred EEEEECCC-ccEEEEEcCC---CCCEEEEEEECC-----CCCEEEEEe
Confidence 99999997 7777555543 237899999532 456666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=73.88 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=84.8
Q ss_pred eeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 238 SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 238 ~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|++..+++|+.|+.-|.|.+|+-.++.. ..+++. +....+..++.+++..++|.|+..|.|.+|.++....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh---hccccc------CccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3777789999999999999999866653 222321 2335667778899999999999999999999885322
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
.. ...+. --...|...|+|++|++++..|.+|...|+|....+..
T Consensus 111 ~~--------------~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RD--------------LDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Cc--------------ceeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 10 11000 00011466799999999999999999999998888766
|
|
| >KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.5e-05 Score=65.86 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
=+|..||||||..|.+||+.|+++|..|...|..|-+||
T Consensus 49 V~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 49 VEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999987
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0031 Score=70.57 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
....|.+.+++|+...|+.|+.||.|++||...+.. ......-.++.++|+|+|..+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----------------------~~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----------------------LLAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----------------------eeeeecccceEEEEcCCCcEE
Confidence 447899999999999999999999999999874311 111223347899999999999
Q ss_pred EEEecCCeEEEEecCCCeeE
Q 003360 362 AVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l 381 (826)
++|+.-|.+.+||+.-..+-
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998654433
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.015 Score=66.21 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCc-eee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPL-FLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~-~~~ 267 (826)
-.|.--++...+.+++.|. .|.+-+|+.........+..-..++.+ .+++..++|.|++.|.|.++-+.... ..+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3455556778889999988 888888876654444432222444444 89999999999999999999882221 111
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
++.-... ..|...|+|++|++++..|.+|...|+|.+-.+..
T Consensus 114 ~~~t~~d-----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCD-----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeecccc-----ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111110 23778999999999999999999999999988875
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=75.43 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=119.0
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
++..++.+.-...+..+|..... .........+.|+.++ .+++.+.+|. .|+|.+-+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-----------------e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-----------------ETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS 206 (1118)
T ss_pred CCcceeecchhhheeeeecccce-----------------eeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc
Confidence 34556666666777777777631 0010111223455554 4578888888 89988886544
Q ss_pred -CceeecccccCCcceeeCCCCCEEEEEEC---------CCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 223 -PPLLDFETKLKDGSQSHSKVKNLFITGHS---------DGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 223 -~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~---------DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.....+ ..|++.+..|+-.|++|+|++. |..|+|||+ .-+.+.+ +. .+- .-.-+.|
T Consensus 207 ~~~iht~-~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~--------~~~-~P~flrf 273 (1118)
T KOG1275|consen 207 FETIHTF-DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQ--------FPY-GPQFLRF 273 (1118)
T ss_pred Cceeeee-eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCC---cc--------ccc-Cchhhhh
Confidence 344445 7899999999999999999874 678899998 3333222 11 111 2245678
Q ss_pred eCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCe
Q 003360 292 DGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 292 sp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
+|. ...+|+++..|...+-|..+-... +.+ +... .....+.++++|++|+.+|.|..+|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----------~~~-------~~~v~p~~s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNP-----------PAG-------VKMVNPNGSGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCC-----------ccc-------eeEEccCCCcceeEEecCCCceEEEecccCc
Confidence 885 567899999999988884321110 011 1122 22334999999999999999999999
Q ss_pred EEEEe
Q 003360 370 VYLLD 374 (826)
Q Consensus 370 V~vwD 374 (826)
|.+|-
T Consensus 336 v~~wa 340 (1118)
T KOG1275|consen 336 VNLWA 340 (1118)
T ss_pred Eeeec
Confidence 99997
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.15 Score=57.33 Aligned_cols=154 Identities=13% Similarity=0.173 Sum_probs=86.4
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC-CCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
..++.++.+|.+...|...... +...+..... ..+. .....+.-+| .+..+++++.+|.+..+|..++...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~--~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-- 279 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQL--IWQQRISQPT--GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV-- 279 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChh--hheeccccCC--CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE--
Confidence 4566778899999888843331 1111100000 0000 0000111112 2456777788899999998754321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+ .... +....+.. .+..|.+++.+|.|..+|..+++.+........ ....+...
T Consensus 280 ---W--------------~~~~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v- 333 (394)
T PRK11138 280 ---W--------------KREY----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVL- 333 (394)
T ss_pred ---E--------------eecC----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEE-
Confidence 0 0100 11111222 355788889999999999999988854432111 01111111
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+..|++++.||.|.++|..+|+.+....
T Consensus 334 -------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 334 -------YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred -------ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 15678899999999999999999887753
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.24 Score=55.65 Aligned_cols=192 Identities=11% Similarity=0.149 Sum_probs=99.7
Q ss_pred CeEEEec-CCcEEEeccCCCce-eecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccc
Q 003360 205 SFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFS 280 (826)
Q Consensus 205 ~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~ 280 (826)
..++.+. ++.+..++...... ... ...+.+.+ -.-.+..++.+..||.|.-+|. ++.. +...... ...+.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~--~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~-~~~~~ 194 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQT--KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAV---KWTVNLD-VPSLT 194 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccc--cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCE---eeeecCC-CCccc
Confidence 3444444 77777776543322 222 11222322 1112346667888999999999 4444 2323211 00000
Q ss_pred --cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccC
Q 003360 281 --LSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRN 357 (826)
Q Consensus 281 --~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~ 357 (826)
....++. .+..++.++.+|.+..+|..++...-...+. .+.+.. .+ -+... ...++ + .
T Consensus 195 ~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~----~~~~~~-~~--~~~~~~~~sP~----v--~ 255 (394)
T PRK11138 195 LRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS----QPTGAT-EI--DRLVDVDTTPV----V--V 255 (394)
T ss_pred ccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccc----cCCCcc-ch--hcccccCCCcE----E--E
Confidence 0111211 1235667778888888888755331100000 000000 00 00000 01111 1 2
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+..|.+++.+|.+..+|..+++.++...... ...+ .. ++..+++++.+|.+..+|..+|+.+-.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~~------~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--AV------DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--EE------ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 4467788889999999999999886554211 1111 11 367888899999999999999987644
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0081 Score=63.89 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-
Q 003360 281 LSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS- 358 (826)
Q Consensus 281 ~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g- 358 (826)
.++..|..|+|+|..+ ++..++.+.+|+|.|+++... +.......++.+.+|.-+.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----------------------vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----------------------VSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEeccccee----------------------eeheeccCCceeeeeccCCc
Confidence 5668899999999887 788999999999999985433 2222335679999998654
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.++..|..+|.|.|||++.++-.+......-...+|..++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 5677788999999999998865422221112344666665544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0085 Score=63.74 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=55.8
Q ss_pred ecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
++.|...|..++|+|....|+ .++ +..|++.+............+ ..+++ |.-+ .++|..|-.+|.|.|||+..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 678889999999999998544 466 889999876554443332444 55666 6544 56889999999999999944
Q ss_pred Cc
Q 003360 263 PL 264 (826)
Q Consensus 263 ~~ 264 (826)
++
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 43
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0044 Score=71.09 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=75.7
Q ss_pred EEEEEeeCCCeEEEec-----CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 196 TAMKLITGNSFILSSA-----DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-----d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
+..+|+|..+.++.++ .|.|.+|-....+-.....|....-.||||..-+|+.|-.-|.+.+|....... .+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---ee
Confidence 3445666666666543 366777733322222222222222244999999999999999999999944442 22
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
+. ..|..+|+.+.|+++|..|+++..-|.|.+|+..
T Consensus 96 v~-------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VV-------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ec-------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22 4688999999999999999999999999999876
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.11 Score=57.77 Aligned_cols=109 Identities=8% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 284 IPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
..|...+|-|.|..+++-+. ..+|.+|.++++... .. +.........+.+.|+|.|++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~--------------~~-----lVk~~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK--------------PS-----LVKELDKKFANTVFWSPKGRF 506 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc--------------hh-----hhhhhcccccceEEEcCCCcE
Confidence 57889999999988776433 347888888743211 00 111111345788999999999
Q ss_pred EEEEe---cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 361 LAVGS---DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 361 lasGs---~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
++++. ..|.+.++|+.-..+..+. .......+.+.|.|. |+|++++++-..
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k~~~---~~eh~~at~veWDPt------GRYvvT~ss~wr 560 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLKDTA---SPEHFAATEVEWDPT------GRYVVTSSSSWR 560 (698)
T ss_pred EEEEEecccccceEEEecchhhhhhcc---CccccccccceECCC------CCEEEEeeehhh
Confidence 88764 5788999998743333111 122334567899995 999999987554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.073 Score=60.14 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=102.2
Q ss_pred CEEEEEEeeCCCe-EEEec-C-CcEEEe--ccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEEeCCCC
Q 003360 194 SITAMKLITGNSF-ILSSA-D-EDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFWDVSCP 263 (826)
Q Consensus 194 ~Vt~~~fs~~~~~-l~~~~-d-~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriWD~s~~ 263 (826)
.+..-.|+|+++. ++..+ + +.-.+| +........+ ....+.+.. |+|||+.|+ +.+.+| .|.++|+.+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6677899999985 55444 3 333444 4433333333 223343333 999998555 444454 4666677555
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... +. .+........|+||++.|+-.+ ..|. |.++|+.++.. .. +
T Consensus 268 ~~~~---LT--------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-----------------~r---l 316 (419)
T PRK04043 268 TLTQ---IT--------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-----------------EQ---V 316 (419)
T ss_pred cEEE---cc--------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-----------------Ee---C
Confidence 4322 21 1111223457999998776555 4454 44445542211 00 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecC---------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQ---------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~d---------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.. .+. ....|+|+|+.++..... ..|.+.|+.++.... +... .......|+| |+..
T Consensus 317 t~---~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~---LT~~--~~~~~p~~SP------DG~~ 381 (419)
T PRK04043 317 VF---HGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR---LTAN--GVNQFPRFSS------DGGS 381 (419)
T ss_pred cc---CCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE---CCCC--CCcCCeEECC------CCCE
Confidence 11 111 124899999988876643 368888988776431 1111 1222467887 6887
Q ss_pred EEEEECCC---cEEEEECC
Q 003360 412 LVIATKDS---SVLVLDSD 427 (826)
Q Consensus 412 l~sgs~Dg---~V~iwd~~ 427 (826)
|+..+.++ .+.++++.
T Consensus 382 I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEccCCcEEEEEEecC
Confidence 76665433 36677775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.088 Score=54.28 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=88.1
Q ss_pred CCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 251 SDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 251 ~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
.+|+|..||. ++..+ ...... .......+. ..+++..+++++.++.|..||..++... ..
T Consensus 1 ~~g~l~~~d~~tG~~~---W~~~~~------~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~-----W~---- 61 (238)
T PF13360_consen 1 DDGTLSALDPRTGKEL---WSYDLG------PGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVL-----WR---- 61 (238)
T ss_dssp -TSEEEEEETTTTEEE---EEEECS------SSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEE-----EE----
T ss_pred CCCEEEEEECCCCCEE---EEEECC------CCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEE-----EE----
Confidence 3789999999 55542 222211 001122211 2335667888899999999998754321 10
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-ecccCCCCCeeEEEEeecccCCCC
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-HIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.. ..+.+.... ...+..+++++.++.|+.+|..++++++.. ................. +
T Consensus 62 ----------~~---~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~ 121 (238)
T PF13360_consen 62 ----------FD---LPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV------D 121 (238)
T ss_dssp ----------EE---CSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE------E
T ss_pred ----------ee---cccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE------e
Confidence 11 111111111 223446788888999999999999999774 22111111112222322 2
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+..++++..++.|..+|..+|+.+..+...
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 678889999999999999999999887653
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0002 Score=81.98 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=129.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC--cEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG--AINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG--tVriWD~s~ 262 (826)
+..|...-||++|+...++|+.|+ .|-|++++...+.-..-...|...|+- -+.+|..++|.+.-. -..+|++..
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 345678899999999999999999 999999987665444444678888877 667888777765543 467999932
Q ss_pred CceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
...+ .|. ..-.++.|+.....-+.|..-..+.|||+.++.... .. ++..
T Consensus 1177 -~~~~-------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~--ty----lt~~---------- 1226 (1516)
T KOG1832|consen 1177 -TGGP-------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ--TY----LTDT---------- 1226 (1516)
T ss_pred -ccCc-------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHH--Hh----cCcc----------
Confidence 2111 122 345688998877766777777789999999763311 00 0000
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+..=.+..|||+..+++ .||. +||.+.++.++.+.-... -..-.|+| .+..++.-+
T Consensus 1227 -~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~----~~~G~FHP------~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1227 -VTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD----YGGGGFHP------SGNEVIINS----- 1285 (1516)
T ss_pred -hhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhhee----cccccccC------CCceEEeec-----
Confidence 00011126778999988665 6774 899999887754432111 11124666 366666544
Q ss_pred EEEECCCCceEEe
Q 003360 422 LVLDSDNGNMLST 434 (826)
Q Consensus 422 ~iwd~~tg~~i~~ 434 (826)
-|||++|-+++.+
T Consensus 1286 EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1286 EIWDMRTFKLLHS 1298 (1516)
T ss_pred hhhhhHHHHHHhc
Confidence 4899998887755
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.27 Score=51.24 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=113.3
Q ss_pred EEEee-CCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeeccc
Q 003360 198 MKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ 273 (826)
Q Consensus 198 ~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~ 273 (826)
..|.+ ++.++++.. .+.|..|+........+.. .+.+.. +. +++.++++ ..+ .+.++|........+.....
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEET
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccC
Confidence 45676 566666655 7777777655443332211 222222 55 56555554 444 45666985555444444321
Q ss_pred ccccccccCCCCeEEEEEeCCCCEEEEEeCCCc------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 274 QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 274 ~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
. .......+.+++.|++++.++...... =.||.+... +... . ....-.
T Consensus 81 ~-----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------~~~~----~-~~~~~~ 134 (246)
T PF08450_consen 81 G-----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------GKVT----V-VADGLG 134 (246)
T ss_dssp T-----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----------------SEEE----E-EEEEES
T ss_pred C-----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----------------CeEE----E-EecCcc
Confidence 0 012357889999999997777654422 234444421 1111 1 111123
Q ss_pred CeEEEEEccCCCEEE-EEecCCeEEEEecCCCee-EEeee-cc--cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 348 SIISLNMNRNSQHLA-VGSDQGYVYLLDTEGPTV-LYQKH-IA--SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 348 ~V~~l~~s~~g~~la-sGs~dG~V~vwD~~~~~~-l~~~~-~~--~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
....|+|+|+++.|. +-+..+.|..+|+..... +.... .. .......-.+++.. ++++.++.-..+.|.
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~------~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS------DGNLWVADWGGGRIV 208 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT------TS-EEEEEETTTEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC------CCCEEEEEcCCCEEE
Confidence 468899999998775 556778899999864322 21111 11 11112356677776 477666666788999
Q ss_pred EEECCCCceEEeeec
Q 003360 423 VLDSDNGNMLSTNLI 437 (826)
Q Consensus 423 iwd~~tg~~i~~~~~ 437 (826)
+++.. |+.+..+..
T Consensus 209 ~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 209 VFDPD-GKLLREIEL 222 (246)
T ss_dssp EEETT-SCEEEEEE-
T ss_pred EECCC-ccEEEEEcC
Confidence 99998 998887643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0037 Score=72.61 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=102.3
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---------C
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---------S 304 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---------d 304 (826)
+|.-...+++++.+|+..|+|-+-|. +... ...+..|.+.|..+. -.|..|++++. |
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~-----------iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFET-----------IHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCce-----------eeeeeccccceeeee--ccCCeEEEeeccccccccccc
Confidence 33336677889999999999999999 4443 334567888877655 46778888865 5
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEe---cCCCee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLD---TEGPTV 380 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD---~~~~~~ 380 (826)
-.|+|||++.-....+..+ ...-.-+.|.|.. ..+++.+..|...+.| +..+..
T Consensus 246 ~FvkVYDLRmmral~PI~~----------------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQF----------------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred chhhhhhhhhhhccCCccc----------------------ccCchhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 5688999985432211100 1111345666653 4688999999999999 444422
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
- ........+.+..+.+++ +++.|+.|-.+|.|.+|...
T Consensus 304 ~--~~~v~p~~s~i~~fDiSs------n~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 304 G--VKMVNPNGSGISAFDISS------NGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred c--eeEEccCCCcceeEEecC------CCceEEEecccCcEeeecCC
Confidence 2 111123445588899988 49999999999999999844
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=73.02 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeE-EEEEccCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSII-SLNMNRNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~-~l~~s~~g~~l 361 (826)
..|--+.|+|.-.++|.+..+|.|.+++++-. . +-..+ +.-.|+ +++|.|||+++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-R----------------------lwtip~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-R----------------------LWTIPIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc-e----------------------eEeccCCCCccceeeeecCCCCEE
Confidence 57788999999999999999999999998711 1 22222 344566 99999999999
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
|+|..||+|++.|..++..+.... ......|.++.|.+
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~~--~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSFL--FSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceeccc--cccccchheeeccc
Confidence 999999999999999998884431 23455677777765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.099 Score=55.25 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=100.7
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-------CCc
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-------SGM 306 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-------dg~ 306 (826)
|+++|++|.|.=. .|.|-|||+.... .. ..++..|+-.-..|.+.||++.|+++.. .|.
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~-~r--------i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGY-RR--------IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCc-EE--------EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 9999999988644 4899999996222 11 2334456656668889999988888732 122
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC-------eEEEEecCCC
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG-------YVYLLDTEGP 378 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG-------~V~vwD~~~~ 378 (826)
.++ ++.+ . ..++..+ ...+|....-+.+....++-.|..|++.++|. ++.|.. .| .|.+++....
T Consensus 129 ~kL-Nl~t--M--~psL~~l-d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~ 201 (305)
T PF07433_consen 129 AKL-NLDT--M--QPSLVYL-DARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA 201 (305)
T ss_pred eec-Chhh--c--CCceEEE-ecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc
Confidence 222 1110 0 0011111 12333322100011133456799999999985 555543 22 3445544332
Q ss_pred eeEEeeec--ccCCCCCeeEEEEeecccCCCCCcEE-EEEECCCcEEEEECCCCceEEee
Q 003360 379 TVLYQKHI--ASDISSGIVSLQFETCSLQGFEKNFL-VIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 379 ~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d~~~l-~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
-..+.... .......+-+|+++. ++..+ +++-.-+.+.+||..+|+++...
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~------~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADR------DGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeC------CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 22211110 123446788999988 46655 45557789999999999998764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.098 Score=58.03 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=46.6
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCC-CceeecccccCCccee-eCCCCCEEEEEEC-----------CCcEEEEeC-
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSV-PPLLDFETKLKDGSQS-HSKVKNLFITGHS-----------DGAINFWDV- 260 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~-----------DGtVriWD~- 260 (826)
=|.+.|||.|.+|++-...-|.+|-... ..+.. ..|.+-=.. |||..++|+|=+. -..++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~R--F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQR--FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHh--ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4678999999999887766678885432 22222 345554344 9999999999653 257899999
Q ss_pred CCC
Q 003360 261 SCP 263 (826)
Q Consensus 261 s~~ 263 (826)
++.
T Consensus 291 tG~ 293 (698)
T KOG2314|consen 291 TGL 293 (698)
T ss_pred ccc
Confidence 443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.36 Score=51.12 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
..++.|+.|..+| +.+++. ....... + .+...|+.+...|+-+.|++=+ |+.|.+|++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4567899999999 888888 2222111 1 1223599999999877666553 4999999997432211
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEE--EccC-CCEEEEEecCCeEEEEecCCCe-----eEEeeecccCCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN--MNRN-SQHLAVGSDQGYVYLLDTEGPT-----VLYQKHIASDIS 391 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~--~s~~-g~~lasGs~dG~V~vwD~~~~~-----~l~~~~~~~~~~ 391 (826)
... .....+.... .........+...+ -... ..+|+++. ..+|.+|.+.... ..... ...
T Consensus 71 ~~~--~~~~~~~~~~-----~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~----~lp 138 (275)
T PF00780_consen 71 TSA--PLAFPKSRSL-----PTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI----SLP 138 (275)
T ss_pred ccc--cccccccccc-----cccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE----EcC
Confidence 000 0000000000 00001122243333 1223 33444444 4488898887642 22222 234
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+.+++|.. +.+++|..++ ..+.|+.++.....
T Consensus 139 ~~~~~i~~~~--------~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 139 DPPSSIAFLG--------NKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred CCcEEEEEeC--------CEEEEEeCCc-eEEEecCCCCceEE
Confidence 6788888874 5566666444 88999997766443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn [] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0078 Score=52.84 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCcCCeEEEEEeeeCCCCceEEEEccCCcC---ccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCC
Q 003360 69 KLDKIPISSLKWVYADGKASRLYIMGASDFV---SMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQ 145 (826)
Q Consensus 69 ~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~---~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~ 145 (826)
...+.||.++.|........-++.+||.... ..+.++++... + ...|.+...++||+.+..+++....++
T Consensus 10 p~pCk~I~Ki~w~~~~~~~~~iiFsGGmp~~~ygdr~~vTV~~g~--~-----~~~ldf~s~VIDF~~i~~~~~~~e~~~ 82 (105)
T PF08366_consen 10 PFPCKAINKILWRTSRNGEPFIIFSGGMPRASYGDRHCVTVMQGK--T-----HVVLDFTSRVIDFFTICESPWPNEFQD 82 (105)
T ss_pred CCCCceeeEEEEEecCCCCcEEEEeCCccccccCCCceEEEEeCC--E-----EEEEEcCCceEEEEEEcCCCCccccCC
Confidence 3568899999998854444566677885433 34677777622 1 367788999999999999988877788
Q ss_pred ceEEEeccCccEEEecchh
Q 003360 146 DSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~ 164 (826)
+.+++++.+.+|.++|+.+
T Consensus 83 P~alvVL~e~eLVvIDL~t 101 (105)
T PF08366_consen 83 PYALVVLLEEELVVIDLQT 101 (105)
T ss_pred CcEEEEEEcCcEEEEECCC
Confidence 8888888888999999876
|
It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO). |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=52.19 Aligned_cols=199 Identities=19% Similarity=0.208 Sum_probs=106.7
Q ss_pred eeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccc
Q 003360 201 ITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSE 276 (826)
Q Consensus 201 s~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~ 276 (826)
.+++..++++. ++.+..|+..... ...+. ..+.+.. ....+..++.+..|+.|+.+|. ++..+ ........
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~---W~~~~~~~ 107 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVL---WSIYLTSS 107 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEE---EEEEE-SS
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccceeeecccccccccceeeeEecccCCccee---eeeccccc
Confidence 33555566654 8888888764332 22221 1222222 2334566777779999999997 55542 33210000
Q ss_pred cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC-CCCeEEEEEEEEeeccCCeEEEEEc
Q 003360 277 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK-KGNSHIIHSVKVMKINGSIISLNMN 355 (826)
Q Consensus 277 ~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~~~V~~l~~s 355 (826)
. ... ..........+..++++..++.|..+|.+++.. +....... .+... +. .-..+.+-...
T Consensus 108 ~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~~~~~~----~~---~~~~~~~~~~~ 171 (238)
T PF13360_consen 108 P---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEPRGSSP----IS---SFSDINGSPVI 171 (238)
T ss_dssp C---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT-SS------EE---EETTEEEEEEC
T ss_pred c---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCCCCCcc----ee---eecccccceEE
Confidence 0 011 111222222377888888899999999885532 11111110 00000 00 01112222223
Q ss_pred cCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 356 RNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 356 ~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.++ .+.+++.+|. +.+ |+.+++.++... ... +..+ ... ++..|++++.++.|.+||..+|+.+-+
T Consensus 172 ~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~----~~~~-~~~------~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 172 SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISG----IYSL-PSV------DGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-----ECEC-EEC------CCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCC----ccCC-cee------eCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 344 7777887885 555 999999775332 111 1111 122 478888888999999999999987643
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.051 Score=61.44 Aligned_cols=148 Identities=11% Similarity=0.136 Sum_probs=85.4
Q ss_pred eCCCCCE-EEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCC--cEEEEE
Q 003360 239 HSKVKNL-FITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSG--MVRIFK 311 (826)
Q Consensus 239 ~s~~~~~-l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg--~V~iwd 311 (826)
|+|+|+. ++..+. +..|.++|+.+.....+.. ....+....|+||++.++. .+.+| .|.+++
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 9999983 554333 3457888885554323221 1234566789999987664 44344 466666
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCeeEEeeeccc
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~l~~~~~~~ 388 (826)
+.++.. .+.....+......|+|||+.|+..+.. | .|.++|+.+++...... .
T Consensus 264 l~~g~~----------------------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~ 319 (419)
T PRK04043 264 TNTKTL----------------------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--H 319 (419)
T ss_pred CCCCcE----------------------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--C
Confidence 653321 1111112223455799999988877643 2 68888988776631111 1
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECC---------CcEEEEECCCCce
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKD---------SSVLVLDSDNGNM 431 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---------g~V~iwd~~tg~~ 431 (826)
+. ....|+| |+..|+..+.. ..|.+.|+.+|..
T Consensus 320 g~----~~~~~SP------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 320 GK----NNSSVST------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CC----cCceECC------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 11 1236777 68877666543 2567777776643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.4 Score=54.05 Aligned_cols=177 Identities=14% Similarity=0.194 Sum_probs=89.8
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.|.+|+.....+....|.+ +.+.+ |..+ +.|+.-..||+++++|..+.. -+.+... ..........|.+..+
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhh-ccccCccccccccccc
Confidence 5888887777777777877 67766 7665 455566799999999996544 1222211 1111122233333333
Q ss_pred eCCCCEEEEEeCCCcEEEE-EeCCCCC-----cccc---------ceEE-EeecCCCCeEEE--EE--EE-E-------e
Q 003360 292 DGTSRVLVSGDQSGMVRIF-KLKYEPH-----AIEN---------SFLS-FTGSKKGNSHII--HS--VK-V-------M 343 (826)
Q Consensus 292 sp~~~~Lasgs~dg~V~iw-d~~~~~~-----~~~~---------~~~~-i~~s~~~~~~~~--~~--~~-~-------~ 343 (826)
...|-.+++ .++.+.+. ++..... ..+. .... .....+...... .+ +. . .
T Consensus 136 ~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i 213 (410)
T PF04841_consen 136 YKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQI 213 (410)
T ss_pred CCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccc
Confidence 334422222 22222222 1111000 0000 0000 001111111000 00 11 0 1
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
...+++..|++||+|++||.-..+|.+.|++..-.+++....+ ........+.|.
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~~~p~~~~WC 268 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSKSPPKQMAWC 268 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcCCCCcEEEEE
Confidence 1236799999999999999999999999988766666644443 223344555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.46 Score=52.48 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 283 GIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
.++|...+|.|.++.|++.+ ....+.+||++.+ +++....++=..+-|||.+++
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------------------l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------------------LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc------------------------eEEecCCcccccccccCcccE
Confidence 37999999999998877654 6788999999843 334444555566789999999
Q ss_pred EEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECC
Q 003360 361 LAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSD 427 (826)
Q Consensus 361 lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~ 427 (826)
+++++- .|.|-+||..+.-.+...- .+ ..-.-+.|+| |++++.+... |..|+|||..
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~--~~--~n~s~~~wsp------d~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAF--NG--LNTSYCDWSP------DGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEe--ec--CCceEeeccC------CceEEEecCCCcccccCcceEEEEec
Confidence 887554 4789999997765552111 11 1122345777 6887777654 6788999987
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.078 Score=47.09 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred eEEEEEeC---C-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 286 LTALYYDG---T-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 286 V~~l~fsp---~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
|++|+++. + ...|++|+.|..||+|+=.. . +....-...|++|+-...+ .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------~-----~~Ei~e~~~v~~L~~~~~~-~F 56 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------I-----VAEITETDKVTSLCSLGGG-RF 56 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------E-----EEEEecccceEEEEEcCCC-EE
Confidence 67777765 2 26899999999999998651 1 2333346678888888774 69
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+.|..+|+|-+|+-.. -++.. .....++++.+... .+..-.-|++|-++|.|-
T Consensus 57 ~Y~l~NGTVGvY~~~~--RlWRi----KSK~~~~~~~~~D~--~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 57 AYALANGTVGVYDRSQ--RLWRI----KSKNQVTSMAFYDI--NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEecCCEEEEEeCcc--eeeee----ccCCCeEEEEEEcC--CCCCceEEEEEecCCeEE
Confidence 9999999999998633 23222 23345777777664 221235788888888764
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.31 Score=54.37 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=111.4
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccC----CC-----ce-----------------eec-----------------c
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKS----VP-----PL-----------------LDF-----------------E 229 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~----~~-----~~-----------------~~~-----------------~ 229 (826)
.|+.+.|.+...-++.+. .|.|.+|+.+ .+ .- ... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888988888888877 7777776311 11 00 000 0
Q ss_pred cccCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-----C---CCEEEE
Q 003360 230 TKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-----T---SRVLVS 300 (826)
Q Consensus 230 ~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-----~---~~~Las 300 (826)
....|.|++ -..+=-+++.|++||++.|.|+.++.......+... ..-......|+++.|.- | +-.|.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRES--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccc--ccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 112455666 334555899999999999999988885332222210 00012236789999872 2 257899
Q ss_pred EeCCCcEEEEEeCCCCC-ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEE-EccC---------------------
Q 003360 301 GDQSGMVRIFKLKYEPH-AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN-MNRN--------------------- 357 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~-~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~-~s~~--------------------- 357 (826)
|...|.+.+|++.-... .....+.... ..+.++|..+. |+.+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~---------------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT---------------TNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE-----------------SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc---------------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 99999999999862111 0000111111 11222222222 1100
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
..++++++ +..++|+...+.+..+... ........+.+.+... ...+..|++-..+|.|+++.+..=+.+...
T Consensus 226 ~g~vVvvS-e~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 226 PGYVVVVS-ESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTIS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp -EEEEEE--SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE--EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred CcEEEEEc-ccceEEEeCCCCcccceee---ccccccceEEEEeecc-cCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 12344444 5568999998777664332 1112222344432110 113778899999999999999977777664
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0012 Score=75.86 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=102.8
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CC-c
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SG-M 306 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg-~ 306 (826)
.|+.+.+| |+.+.+.|+.|+..|.|+++++..+.. +..++.|+.+|+.|.=+-++..+++.+. +. .
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceeeeeccccCch
Confidence 36667777 999999999999999999999944431 3345789999999998888876665443 33 5
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-e
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-H 385 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~ 385 (826)
.-+|++..-- +..|. -..-.++.|+..-++-+.|+.-..+.|||+.++..+.+. .
T Consensus 1169 saLW~~~s~~---------------~~~Hs---------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1169 SALWDASSTG---------------GPRHS---------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred HHHhcccccc---------------Ccccc---------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 7899987311 11110 112456788877666677777777899999998876331 1
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
-....+-.-....|+|+ ..+++ +|| .+||.+..+.+..
T Consensus 1225 ~~~~~~y~~n~a~FsP~------D~LIl---ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPC------DTLIL---NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred cchhhhhhccccccCCC------cceEe---eCc--eeeeeccHHHHhh
Confidence 00111111244668884 33332 355 4799886554443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00087 Score=74.85 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=117.5
Q ss_pred CCEEEEEEeeCCC--eEEEec-CCcEEEeccCCCce--eecccccCCccee--eCC-CCCEEEEEEC----CCcEEEEeC
Q 003360 193 SSITAMKLITGNS--FILSSA-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSK-VKNLFITGHS----DGAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~--~l~~~~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~-~~~~l~Tgs~----DGtVriWD~ 260 (826)
..+.|++.+-+.+ .++.|. +|.|.+-..+.+.. ..+..+|....++ |.+ |.++||+|.. |-.+.|||.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666544333 444555 78777663332221 2222344555555 554 5678888853 678999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
......|.-+...+ ......+.+++|-.+.+++.+|.....|.++|++..... .
T Consensus 137 ~s~ltvPke~~~fs-----~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------------~ 190 (783)
T KOG1008|consen 137 NSLLTVPKESPLFS-----SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------------V 190 (783)
T ss_pred ccccCCCccccccc-----cccccCccccccccCcchhhcccccchhhhhhhhhhhhh---------------------h
Confidence 43321111111111 112245568888889999999999999999999833110 0
Q ss_pred EEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEe-cCCCeeEEeeec--ccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 341 KVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLD-TEGPTVLYQKHI--ASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD-~~~~~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
.......|..+.+.| .+.++++-+ ||.|.+|| .+.-+-.+..-. .......+..++|.|. ....+++.+
T Consensus 191 -~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-----rtglla~l~ 263 (783)
T KOG1008|consen 191 -SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-----RTGLLAVLS 263 (783)
T ss_pred -hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-----Ccchhhhhc
Confidence 000122466677777 666677655 99999999 443322211110 0111224888999996 356677777
Q ss_pred CC-CcEEEEECC
Q 003360 417 KD-SSVLVLDSD 427 (826)
Q Consensus 417 ~D-g~V~iwd~~ 427 (826)
.| ++|+.+|+.
T Consensus 264 RdS~tIrlydi~ 275 (783)
T KOG1008|consen 264 RDSITIRLYDIC 275 (783)
T ss_pred cCcceEEEeccc
Confidence 66 478999876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.98 Score=49.15 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=115.9
Q ss_pred EEeecCCCceeeEEEecCCCCCCCCCCceEEEecc---------C-ccEEEecchhHHHHHhhccCCCCCCCCccceeee
Q 003360 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGK---------S-GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKM 188 (826)
Q Consensus 119 ~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~---------~-G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l 188 (826)
...++..+.+..+..+.-... ......+++|++. . |.|++|+.... +.. ..+...+.-
T Consensus 17 ~~~l~~~E~~~s~~~~~l~~~-~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~-------~~~----~~~l~~i~~ 84 (321)
T PF03178_consen 17 SFELEPNEHVTSLCSVKLKGD-STGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES-------PEN----NFKLKLIHS 84 (321)
T ss_dssp EEEEETTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEE
T ss_pred EEECCCCceEEEEEEEEEcCc-cccccCEEEEEecccccccccccCcEEEEEEEEcc-------ccc----ceEEEEEEE
Confidence 345555555555554431110 0023456666653 2 89999887661 000 001111222
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCc-eeec-ccccCCcceeeCCCCCEEEEEECCCcEEEEeC--CCCc
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPP-LLDF-ETKLKDGSQSHSKVKNLFITGHSDGAINFWDV--SCPL 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~-~~~~-~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~--s~~~ 264 (826)
....++|++++-. +..++.+....+.+|+.+... +... .+...-.+.+....+++|+.|....+|.++.+ ....
T Consensus 85 ~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-
T ss_pred EeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCE
Confidence 3446788888777 444666667888888554433 3332 22222344445555779999999999998855 2333
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC-eEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN-SHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~-~~~~~~~~~~ 343 (826)
+..+. + +.....++++.|-++...++++..+|.|.++......... .++. ... .....
T Consensus 163 l~~va--~-------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~----------~~~~~~L~--~~~~f 221 (321)
T PF03178_consen 163 LILVA--R-------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS----------RDGDPKLE--RISSF 221 (321)
T ss_dssp EEEEE--E-------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST----------TTTTTBEE--EEEEE
T ss_pred EEEEE--e-------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc----------ccccccce--eEEEE
Confidence 32211 1 1223578999998666799999999999999987432111 1221 111 02222
Q ss_pred eccCCeEEE---EEccC--C------CEEEEEecCCeEEEE
Q 003360 344 KINGSIISL---NMNRN--S------QHLAVGSDQGYVYLL 373 (826)
Q Consensus 344 ~~~~~V~~l---~~s~~--g------~~lasGs~dG~V~vw 373 (826)
.....|+++ ++.|. + ..++.++.+|.|.+.
T Consensus 222 ~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 222 HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 335557777 54441 2 248888899988744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.9 Score=48.20 Aligned_cols=289 Identities=12% Similarity=0.132 Sum_probs=150.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcee---eeeecccccccccccCCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEeC
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFL---LILSLKQQSEKDFSLSGIPLTALYYDG-----TSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~---~i~~l~~~~~~~~~~h~~~V~~l~fsp-----~~~~Lasgs~dg~V~iwd~~ 313 (826)
+...|++|+..|.+|||+....... ++.+.+ -..+|-.|..-. +...||+ -.-..+.||.+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---------l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---------LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---------cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 4569999999999999998433311 111111 125777776542 2334555 677788889885
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-----CCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
...... ..+.++.+.-+.....+.....+++-|- ..++.+=+.||.+.+++-+... +...+..
T Consensus 106 ~~~g~~----------~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~ 173 (418)
T PF14727_consen 106 LVDGTV----------EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD 173 (418)
T ss_pred ecCCCc----------ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC
Confidence 332110 1222333222222222334445555332 2478889999999999975543 3233221
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE---E-----------ee-----eccCCCCCcceEEE
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML---S-----------TN-----LIHPKKPSRALFMQ 449 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i---~-----------~~-----~~~~~~~~~~lsi~ 449 (826)
---...+.|.+. .+.+++++++..+..|....=... . .. .+.-+..-.++.|.
T Consensus 174 --~llPgPl~Y~~~------tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~ 245 (418)
T PF14727_consen 174 --FLLPGPLCYCPR------TDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQ 245 (418)
T ss_pred --CCCCcCeEEeec------CCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEE
Confidence 111223677774 777888888888877764310000 0 00 00000011122222
Q ss_pred EecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee--
Q 003360 450 ILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-- 527 (826)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-- 527 (826)
... .......+++-+++.+.+++.. |.-+..++..+. ..|+.......
T Consensus 246 v~~-------------------------~~~~~~~IvvLger~Lf~l~~~----G~l~~~krLd~~-p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 246 VVR-------------------------FSSSESDIVVLGERSLFCLKDN----GSLRFQKRLDYN-PSCFCPYRVPWYN 295 (418)
T ss_pred EEE-------------------------cCCCCceEEEEecceEEEEcCC----CeEEEEEecCCc-eeeEEEEEeeccc
Confidence 221 1224467888889998888776 444555555443 23333322211
Q ss_pred -CC-ceEEEEEEeeceEEEeccCCcccccccccc--ceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeecccC
Q 003360 528 -GS-DVGLMLLFTSGKFEIRSLPELSLLKETSIR--GFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQR 602 (826)
Q Consensus 528 -~~-~~~lv~~~~~G~I~i~slP~L~~l~~~sl~--~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~~ 602 (826)
+. ...+++...+|.+.|+. +.+++-...+. .+... ..-...-+|-|+..+.+-.+++ +.++.+
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~---------v~~~~~~~G~IV~Ls~~G~L~v-~YLGTd 362 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALS---------VANFNGLKGLIVSLSDEGQLSV-SYLGTD 362 (418)
T ss_pred CCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEE---------ecccCCCCceEEEEcCCCcEEE-EEeCCC
Confidence 11 23588889999999986 33333332221 11111 1111233677777777666666 777766
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.26 Score=59.06 Aligned_cols=203 Identities=13% Similarity=0.193 Sum_probs=110.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.-..|-.+..+..||.|-... .+.....+........+|++-+.+| +||+|+.+|.||+||..
T Consensus 544 ~tflGls~n~lfriDpR~~~~----------------k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~ 606 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGN----------------KLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL 606 (794)
T ss_pred ceEEEECCCceEEeccCCCCC----------------ceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc
Confidence 456677888899999984321 0000001112234568899888888 79999999999999954
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC--CCc------eEEeeeccCCCCCcceEE
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD--NGN------MLSTNLIHPKKPSRALFM 448 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~--tg~------~i~~~~~~~~~~~~~lsi 448 (826)
+.. - .....+...||+.|..+. ||.+|++.+ +..+.+++.. .|+ +...+....+...+.+.+
T Consensus 607 g~~-A--KT~lp~lG~pI~~iDvt~------DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L 676 (794)
T PF08553_consen 607 GKR-A--KTALPGLGDPIIGIDVTA------DGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQL 676 (794)
T ss_pred chh-h--hhcCCCCCCCeeEEEecC------CCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEec
Confidence 322 1 222346678999999988 688776544 6677787753 221 111110001111111211
Q ss_pred EEecCCCCcccCcccccc----ccccCCCCCCCC----CCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCce
Q 003360 449 QILNGQDGLARGANLSNV----AGMNKGSPKENA----VPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCC 520 (826)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~ 520 (826)
.+.+ ...+ .+.-.+.+. .| ...+..||+++..-+-+|++..+.+|...+..-.+.. .-+
T Consensus 677 ~pe~----------~~~~~~~~~~~~~Ft~a-~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~~Y~ikry~--~~V 743 (794)
T PF08553_consen 677 KPEH----------VAYMQHETGKPISFTPA-KFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKKDPYQIKRYD--ENV 743 (794)
T ss_pred CHHH----------HHHHHhccCCCceeece-EEecCCCCccceEEEeccCEEEEEEHHHHhCCCCCceEEEEcC--Cce
Confidence 1110 0000 000011111 11 2346799999999999999998888776554444433 222
Q ss_pred eeEeeeeCCceEEEEEEee
Q 003360 521 WASTFYSGSDVGLMLLFTS 539 (826)
Q Consensus 521 ~~~~~~~~~~~~lv~~~~~ 539 (826)
.+..|.-+....+|+.+.|
T Consensus 744 ~~dnF~fg~d~~vival~~ 762 (794)
T PF08553_consen 744 VADNFKFGSDKNVIVALPN 762 (794)
T ss_pred EEccceeCCCCcEEEEccc
Confidence 2333333444445555444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.64 Score=53.84 Aligned_cols=219 Identities=10% Similarity=0.050 Sum_probs=118.0
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCc-EEE--ec-----------cCCCceeec-ccccCCccee-------eCCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DED-YSL--LA-----------KSVPPLLDF-ETKLKDGSQS-------HSKVKN 244 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~-i~~--w~-----------~~~~~~~~~-~~~h~g~V~~-------~s~~~~ 244 (826)
+.|++.++.-.=.-||++++.-. ... .|+ -. .....-..+ ++++++.|.+ ++++|+
T Consensus 126 D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk 205 (635)
T PRK02888 126 DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK 205 (635)
T ss_pred CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence 45666665555556778777743 111 111 11 111111112 3567788877 677887
Q ss_pred EE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---C------------CcEE
Q 003360 245 LF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---S------------GMVR 308 (826)
Q Consensus 245 ~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---d------------g~V~ 308 (826)
.+ .+.-..+.+.+.|..... ...++. .. .....++++|++.++.+.+. . ..+.
T Consensus 206 ~l~~~~ey~~~vSvID~etme--V~~qV~--------Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETME--VAWQVM--------VD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred EeecccceeEEEEEEECccce--EEEEEE--------eC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 55 344445778888874322 222222 11 13356788888888877752 1 1333
Q ss_pred EEEeCCCCCcc---------ccceEEEeecC---CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEec
Q 003360 309 IFKLKYEPHAI---------ENSFLSFTGSK---KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDT 375 (826)
Q Consensus 309 iwd~~~~~~~~---------~~~~~~i~~s~---~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~ 375 (826)
+|++....... .+.+.-+.... .+... +.+.........+.++|||+++++++. +.+|.|+|+
T Consensus 275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v----~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSAL----TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcce----EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 44443210000 00111111111 01111 344445566888999999998876664 899999999
Q ss_pred CCCeeEEeeec--------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 376 EGPTVLYQKHI--------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 376 ~~~~~l~~~~~--------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+...++...+ .-.........+|.. ++....+.--|..|..||+.+
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg------~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG------RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECC------CCCEEEeEeecceeEEEehHH
Confidence 87653221110 001122334566766 477777788899999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.28 Score=55.59 Aligned_cols=179 Identities=13% Similarity=0.200 Sum_probs=93.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEE-eCCCCcee
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFW-DVSCPLFL 266 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriW-D~s~~~~~ 266 (826)
...+-..+.+.++|+++.++.++++.+.++.........+ ..+... |.+ ++.+|+-..+++|+|+ +......
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~- 102 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV- 102 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc-
Confidence 3444557789999999999998888888876332111111 112222 777 5557777778999996 4422220
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
..++ .. ..+..|-. |.+|++.+.+ .|.+||+.++.. ++.....
T Consensus 103 --k~i~--------~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~----------------------i~~i~v~ 145 (443)
T PF04053_consen 103 --KSIK--------LP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL----------------------IRRIDVS 145 (443)
T ss_dssp ---------------S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E----------------------EEEESS-
T ss_pred --eEEc--------CC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce----------------------eeEEecC
Confidence 0111 11 23444433 7778777666 899999985432 3333322
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCC------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+|..+.|+++|.++|..+.+ .+.|++.... ... ........|.+..|.. . +++-
T Consensus 146 -~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~----~~~E~~~~IkSg~W~~-------d-~fiY 211 (443)
T PF04053_consen 146 -AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE----LIHEISERIKSGCWVE-------D-CFIY 211 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE----EEEEE-S--SEEEEET-------T-EEEE
T ss_pred -CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE----EEEEecceeEEEEEEc-------C-EEEE
Confidence 38999999999999999877 5678776443 111 1112245678888874 2 5555
Q ss_pred EECCCcEEEEE
Q 003360 415 ATKDSSVLVLD 425 (826)
Q Consensus 415 gs~Dg~V~iwd 425 (826)
.+.. +++.+-
T Consensus 212 tT~~-~lkYl~ 221 (443)
T PF04053_consen 212 TTSN-HLKYLV 221 (443)
T ss_dssp E-TT-EEEEEE
T ss_pred EcCC-eEEEEE
Confidence 5544 776633
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.66 Score=47.13 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=75.0
Q ss_pred EeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe
Q 003360 291 YDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
.+++. .+++.|+..+.+.--|..++...- .......|-+-++- .|.+++.|+..|.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~W----------------------e~ilg~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIW----------------------EAILGVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEe----------------------ehhhCceeeeeeEE-ECCEEEEEEccCc
Confidence 34443 567788999988888887553311 00112223332222 5778999999999
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+++.+..++...+.+..... |.+-+-.. +++..++.|+.|++.+..|..+..++..
T Consensus 75 lYfl~~~tGs~~w~f~~~~~----vk~~a~~d-----~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILET----VKVRAQCD-----FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEEecchhheeeeeehhh----hccceEEc-----CCCceEEEecCCCcEEEecccccceEEe
Confidence 99999999988766654322 22211111 1689999999999999999998887754
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2.1 Score=43.61 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=84.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
.+++.|+..|.+.--|...+.+ ..+... +..|-+-+.- -+..++.|...|.+.+.+++++...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~------~We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~----- 86 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL------IWEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI----- 86 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE------Eeehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe-----
Confidence 4677788888888888733331 111111 1122221111 3567999999999999999866331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCe-EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSI-ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
..+.. .+.| ......+++..+..|+.|++.+..|+++..++|..++..+ +--+|.
T Consensus 87 ----------------w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-------~f~sP~ 142 (354)
T KOG4649|consen 87 ----------------WNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-------TFVSPV 142 (354)
T ss_pred ----------------eeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc-------eeccce
Confidence 11111 1111 1224567889999999999999999999999988765332 222333
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..++ ...|++++..|.|.-...+++
T Consensus 143 i~~g--~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 143 IAPG--DGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ecCC--CceEEEEeccceEEEEccCCC
Confidence 2222 344666666666655555544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.3 Score=46.97 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred EEEeeCCCeEEEec------CCcEEEeccCCCceeecccccCCccee----eCCCCCEEEEEEC-------CCcEEEEeC
Q 003360 198 MKLITGNSFILSSA------DEDYSLLAKSVPPLLDFETKLKDGSQS----HSKVKNLFITGHS-------DGAINFWDV 260 (826)
Q Consensus 198 ~~fs~~~~~l~~~~------d~~i~~w~~~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~-------DGtVriWD~ 260 (826)
..|++||++|++.- .+.|-+|+........-+++ ++||-- +.|+++.|+.+-- .|..++.=-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 57999999999843 46799997663222222222 344422 7888877776521 133333211
Q ss_pred -CCCceeeeeecccccccc--c--ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 261 -SCPLFLLILSLKQQSEKD--F--SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~--~--~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
..+.+..+-....+-..+ + ..|..+|..|++.+++..++..-..|.-. + ...-+...+.+...
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~----------~~PLva~~~~g~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--D----------APPLVALHRRGGAL 202 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--c----------cCCeEEEEcCCCcc
Confidence 111111110000000111 1 34667899999998877665543333210 0 00000000111110
Q ss_pred EEEE---EEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 336 IIHS---VKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 336 ~~~~---~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
.... -......+.|-+|+++.++.++++.| ..|.+.+||..++.++-..
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 0000 00122367899999999998886655 6788999999999988433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.4 Score=44.10 Aligned_cols=217 Identities=9% Similarity=0.081 Sum_probs=104.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-- 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-- 260 (826)
.++.....++.++|.|+...|++.. .+.|..++.....+..+.-.-.+.... +..++.++++--.++.+.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3566667799999999988888866 344544454432222221111122222 5555556665555899988888
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.+... .......-.......+...+-.|+|.|.+..|.++-+..-..||.+..-... ..+.... .. . +
T Consensus 96 ~~~~~-~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--~~~~~~~-~~---~-----~ 163 (248)
T PF06977_consen 96 DTTSL-DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--FDLFVSD-DQ---D-----L 163 (248)
T ss_dssp --TT---EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--S--EEEE--H---H-----H
T ss_pred ccccc-chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--cceeecc-cc---c-----c
Confidence 22221 1111110000000123366889999999888888888878888888742100 0000000 00 0 0
Q ss_pred E-EeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCC------CCeeEEEEeecccCCCCCcEE
Q 003360 341 K-VMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS------SGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 341 ~-~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~------~~V~sl~f~~~~~~~~d~~~l 412 (826)
. ....-..+.+++++|. +.+++...++..|.++| .+++++....+..+.. ...-.|+|.+ +| .|
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~------~G-~L 235 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP------DG-NL 235 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T------T---E
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC------CC-CE
Confidence 0 0011334889999885 45667777888999999 5777765555543321 2456677876 34 45
Q ss_pred EEEECCCcEEE
Q 003360 413 VIATKDSSVLV 423 (826)
Q Consensus 413 ~sgs~Dg~V~i 423 (826)
+..+.-+..++
T Consensus 236 YIvsEpNlfy~ 246 (248)
T PF06977_consen 236 YIVSEPNLFYR 246 (248)
T ss_dssp EEEETTTEEEE
T ss_pred EEEcCCceEEE
Confidence 55555444444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0095 Score=40.57 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=28.2
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEe
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 42 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd 42 (826)
...+...|.+++|. |++.++++|+.||.+++||
T Consensus 8 ~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 34456789999995 5789999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.03 Score=66.66 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=75.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
++..++-+-.+..++.|+..|.|-.+|+..+-+.. ..-....++|++++|+.+|.+++.|
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~--------------------~~ne~v~~~Vtsvafn~dg~~l~~G 148 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPL--------------------HQNERVQGPVTSVAFNQDGSLLLAG 148 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchh--------------------hcCCccCCcceeeEecCCCceeccc
Confidence 44444444456678999999999999998542200 0011126789999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
..+|.|.+||+..++++.... .+..+++.+-+.-... ++..++++-..|.
T Consensus 149 ~~~G~V~v~D~~~~k~l~~i~---e~~ap~t~vi~v~~t~---~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 149 LGDGHVTVWDMHRAKILKVIT---EHGAPVTGVIFVGRTS---QNSKLLTSDTGGS 198 (1206)
T ss_pred cCCCcEEEEEccCCcceeeee---ecCCccceEEEEEEeC---CCcEEEEccCCCc
Confidence 999999999999988875443 4556666666554311 2345666666665
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.81 E-value=6.4 Score=47.45 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=88.9
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----- 358 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----- 358 (826)
..++....+.+...+++++.++.+...+...... ...........|.|+.++|-|
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l--------------------~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL--------------------REVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccce--------------------eeeeeheecceeEEEecccCCCCCCc
Confidence 3445555555555777777777766666652210 001122236679999999753
Q ss_pred -CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE--EECCCCceEEee
Q 003360 359 -QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV--LDSDNGNMLSTN 435 (826)
Q Consensus 359 -~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i--wd~~tg~~i~~~ 435 (826)
+++|+|.++..+.+.-...--++..... .....-..++-+... ..|..+|.++..||.+.- +|..+|..-..-
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~-l~~~~iPRSIl~~~~---e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQ-LSGEIIPRSILLTTF---EGDIHYLLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeec-cCCCccchheeeEEe---eccceEEEEEcCCceEEEEEEEcccceEcccc
Confidence 3799999988776665433222211111 111222233333321 114789999999998854 455555443221
Q ss_pred eccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 436 LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 436 ~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
..+ ...++.++..+. ......+++|+|+-.-+|+-+
T Consensus 624 k~~--lGt~P~~Lr~f~--------------------------sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 624 KVT--LGTQPISLRTFS--------------------------SKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ccc--cCCCCcEEEEEe--------------------------eCCceEEEEeCCCCEEEEecC
Confidence 111 122333333332 112358889999988888776
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.27 Score=43.70 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=60.6
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (826)
|+++++... .+...+.|++||.|..|++|+-. +.+..+ .....+.++..+.
T Consensus 2 V~al~~~d~--d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei----~e~~~v~~L~~~~--------------------- 52 (111)
T PF14783_consen 2 VTALCLFDF--DGDGENELLVGSDDFEIRVFKGD--EIVAEI----TETDKVTSLCSLG--------------------- 52 (111)
T ss_pred eeEEEEEec--CCCCcceEEEecCCcEEEEEeCC--cEEEEE----ecccceEEEEEcC---------------------
Confidence 667777764 22225789999999999999965 455442 2234445554443
Q ss_pred CCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEe
Q 003360 474 PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 474 ~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~ 545 (826)
.+.|+.+..+++|.+|+-. ..+.++|-.....+....-.. ....-||+.+.||+|++|
T Consensus 53 -------~~~F~Y~l~NGTVGvY~~~-------~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~R 111 (111)
T PF14783_consen 53 -------GGRFAYALANGTVGVYDRS-------QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEVR 111 (111)
T ss_pred -------CCEEEEEecCCEEEEEeCc-------ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEeC
Confidence 1235555555566666443 122222211112222111111 345679999999999876
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.75 E-value=3.9 Score=45.79 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC---------------CCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF---------------EKNF 411 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~---------------d~~~ 411 (826)
..+.+|+.+|.+++.|+...-|.|.++|+..+.++...+ +..+. .+.|........ .--+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK---GYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK---GYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc---cCccc--eEEEEEeecccccccccccccCCCCcceEEE
Confidence 349999999999988888888999999999988774332 22221 122222211110 0123
Q ss_pred EEEEECCCcEEEEECCCCceEEeeec
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++-+-.-|.|-||.+++|..+..+.+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 44567789999999999999988643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.012 Score=66.07 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=95.8
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEEeC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGD----QSGMVRIFKLK 313 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs----~dg~V~iwd~~ 313 (826)
.+.+..+++.|..+|.|-+-....+..+ ....+..+-...++++|++ |..+||.|- .|-.+.|||+.
T Consensus 66 y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 66 YGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred cCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3445679999999999999887444321 0111234557889999988 567787773 35679999998
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
+.-........ +.. ..-....+++|-.+.++|.+|.....+.++|+++..... .. -....
T Consensus 138 s~ltvPke~~~---------------fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~s---vnTk~ 197 (783)
T KOG1008|consen 138 SLLTVPKESPL---------------FSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SS---VNTKY 197 (783)
T ss_pred cccCCCccccc---------------ccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hh---hhhhh
Confidence 65221000000 111 012234588898888899999999999999998542210 00 01113
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
|..+...|. ..+++++- .||.|-+||.
T Consensus 198 vqG~tVdp~-----~~nY~cs~-~dg~iAiwD~ 224 (783)
T KOG1008|consen 198 VQGITVDPF-----SPNYFCSN-SDGDIAIWDT 224 (783)
T ss_pred cccceecCC-----CCCceecc-ccCceeeccc
Confidence 444566664 35565554 4999999993
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.72 E-value=3.4 Score=43.65 Aligned_cols=237 Identities=14% Similarity=0.178 Sum_probs=124.1
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP 223 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~ 223 (826)
....++++++.| |++|+... + ... . .-.+...|+.+...+.-..++.-+|+.+.+++...-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------~--------~~~-~-~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------P--------SKP-T-RILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------C--------ccc-e-eEeecceEEEEEEecccCEEEEEcCCccEEEEchhh
Confidence 456788998888 88888722 0 000 0 112223389999999888887777888888853321
Q ss_pred ceee--------------cccccCCcceeeC----CCCCEEEEEECCCcEEEEeCCCC--ce-eeeeecccccccccccC
Q 003360 224 PLLD--------------FETKLKDGSQSHS----KVKNLFITGHSDGAINFWDVSCP--LF-LLILSLKQQSEKDFSLS 282 (826)
Q Consensus 224 ~~~~--------------~~~~h~g~V~~~s----~~~~~l~Tgs~DGtVriWD~s~~--~~-~~i~~l~~~~~~~~~~h 282 (826)
.... ...+...++..|. ..+...+......+|.+|..... .. ....++. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--------lp 138 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--------LP 138 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--------cC
Confidence 1000 0112233444444 23333444444559999888432 21 1222222 22
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
..+.+++|. +..+++|..++ ..+.|+.++... .+..... ..... ........++..+..+. +.+|+
T Consensus 139 -~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~---~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~-~e~Ll 204 (275)
T PF00780_consen 139 -DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS---ELLDPSD--SSSSF----KSRNSSSKPLGIFQLSD-NEFLL 204 (275)
T ss_pred -CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce---EEeCccC--Ccchh----hhcccCCCceEEEEeCC-ceEEE
Confidence 688899998 56788887665 667888844221 1110000 00000 00001122455555554 34444
Q ss_pred EEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 363 VGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.+ .-.+.|..+.... ....+ ...+.++.+. .++|++.+.++ |-||++.+|++++++.
T Consensus 205 -~~~~-~g~fv~~~G~~~r~~~i~W----~~~p~~~~~~--------~pyli~~~~~~-iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 205 -CYDN-IGVFVNKNGEPSRKSTIQW----SSAPQSVAYS--------SPYLIAFSSNS-IEVRSLETGELVQTIP 264 (275)
T ss_pred -Eecc-eEEEEcCCCCcCcccEEEc----CCchhEEEEE--------CCEEEEECCCE-EEEEECcCCcEEEEEE
Confidence 3333 3345565432221 12222 1244455553 56787777654 9999999999988863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.017 Score=39.30 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=28.5
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 281 LSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 281 ~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
.|...|+++.|++.+..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5667999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.17 Score=57.19 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
...+.|+++|+++.++++ .||.-.||..... .. . ..+.-...+|.+.+ .+|+
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~------------------r~----k----~~G~g~~~vw~~~n-~yAv 84 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW------------------RN----K----AFGSGLSFVWSSRN-RYAV 84 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTT------------------EE----E----EEEE-SEEEE-TSS-EEEE
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCC------------------cc----c----ccCceeEEEEecCc-cEEE
Confidence 457899999999999994 5667777773210 00 1 12345667898855 5777
Q ss_pred EecCCeEEEE-ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCC
Q 003360 364 GSDQGYVYLL-DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKP 442 (826)
Q Consensus 364 Gs~dG~V~vw-D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~ 442 (826)
-...++|.|+ ++.... ...... ...+..+-. |.+|.+.+.+ .|.+||..+++.+..+.+..
T Consensus 85 ~~~~~~I~I~kn~~~~~-~k~i~~----~~~~~~If~---------G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~--- 146 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEV-VKSIKL----PFSVEKIFG---------GNLLGVKSSD-FICFYDWETGKLIRRIDVSA--- 146 (443)
T ss_dssp E-TTS-EEEEETTEE-T-T---------SS-EEEEE----------SSSEEEEETT-EEEEE-TTT--EEEEESS-E---
T ss_pred EECCCeEEEEEcCcccc-ceEEcC----CcccceEEc---------CcEEEEECCC-CEEEEEhhHcceeeEEecCC---
Confidence 7778889886 332211 101111 011222211 5556666544 89999999999998853221
Q ss_pred CcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 443 SRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 443 ~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
+-.+ .|++++.+|.+++++.+.|++..
T Consensus 147 --vk~V----------------------------~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 147 --VKYV----------------------------IWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp ---EEE----------------------------EE-TTSSEEEEE-S-SEEEEEE-
T ss_pred --CcEE----------------------------EEECCCCEEEEEeCCeEEEEEec
Confidence 0111 35566789999999999998865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.68 Score=50.37 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=80.4
Q ss_pred CcEEEEeCCCC-----ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 253 GAINFWDVSCP-----LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 253 GtVriWD~s~~-----~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
|.|.++++... .+..+.... ..++|++|+-. .+ .|++|. .+.|.+|++.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~---------~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~---------- 119 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE---------VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT---------- 119 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE---------ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS----------
T ss_pred cEEEEEEEEcccccceEEEEEEEEe---------ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc----------
Confidence 88999998442 332222222 24789998876 33 455443 47899999985430
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-Ce-eEEeeecccCCCCCeeEEEEeecccC
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PT-VLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~-~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
... ..+......|+++... +.++++|+....|.++.+.. +. +..... +.....++++.|.+
T Consensus 120 ------l~~---~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~--d~~~~~v~~~~~l~---- 182 (321)
T PF03178_consen 120 ------LLK---KAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR--DYQPRWVTAAEFLV---- 182 (321)
T ss_dssp ------EEE---EEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE--ESS-BEEEEEEEE-----
T ss_pred ------chh---hheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe--cCCCccEEEEEEec----
Confidence 100 2222234456666665 55899999888888885543 22 321111 23345688888885
Q ss_pred CCCCcEEEEEECCCcEEEEECC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|+..++++..+|.+.++...
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-
T ss_pred --CCcEEEEEcCCCeEEEEEEC
Confidence 24589999999999888765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.064 Score=60.53 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=52.8
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT-ALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~-~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|+|.-.+||++..+|.|-+....... +.++. .++..|+ +++|.|||..||+|-.||+|++-|..++..
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n~qR---lwtip--------~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLNWQR---LWTIP--------IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred EcCccchhheeccCCcEEEEEeccce---eEecc--------CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 77888899999999988777764322 23333 3444555 999999999999999999999999986543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.062 Score=40.03 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
..|.+++|||...++|.|+.+|.|.+|++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 579999999999999999999999999985
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.081 Score=39.41 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=30.5
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
...|.+++|+|...++|.|+.+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 567999999999999999999999999998 55443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.43 E-value=11 Score=42.54 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=36.6
Q ss_pred Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 234 DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 234 g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
+.+.. .||+++++|.-..+|.+.|........ ++.+.- . .......|.||.+...+
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~--~~e~~~------~-~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK--LCEFDT------D-SKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccce--eEEeec------C-cCCCCcEEEEECCCcEE
Confidence 44555 899999999999999999988744432 122220 0 12456788898775433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.22 Score=59.67 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..++..-.+..+++|++.|.|...|.++.-.- ........++|++++|+. ||..+..|-.+|.|.+||..++
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~------dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQ------DGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecC------CCceeccccCCCcEEEEEccCC
Confidence 33333335668999999999999998764221 233345678999999998 6999999999999999999999
Q ss_pred ceEEeeeccCCCCC
Q 003360 430 NMLSTNLIHPKKPS 443 (826)
Q Consensus 430 ~~i~~~~~~~~~~~ 443 (826)
+.+..+..+.....
T Consensus 163 k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT 176 (1206)
T ss_pred cceeeeeecCCccc
Confidence 98887754444333
|
|
| >KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.064 Score=51.70 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 776 VAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 776 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.--.--+|+.+||||||-|-++||.|++++.+|-.-+..|.++|=
T Consensus 140 vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 140 VMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred HHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHH
Confidence 333445689999999999999999999999999999999988873
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=17 Score=43.09 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=82.6
Q ss_pred CCEEEEEEeeCCCeEEEec-------CCcEEEec--cCCCceeecccccCCccee--eCCCCCEEEEEECC-CcEEEEeC
Q 003360 193 SSITAMKLITGNSFILSSA-------DEDYSLLA--KSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD-GAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-------d~~i~~w~--~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D-GtVriWD~ 260 (826)
..+...++++++..++... |..-.+|. ..... ..+..+. .... |+|+|..|++.... ..+++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577888999999887633 43446663 22211 2221221 2333 99999988887643 23444443
Q ss_pred CC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 261 SC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 261 s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.. ..+ .+..+....... .....|..+.|+|||..++.-. +|.|.+=-+.... +|. ..+-.
T Consensus 427 ~~~gql-~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~--------------~G~-~~l~~ 487 (591)
T PRK13616 427 PATGQL-ARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE--------------DGQ-YALTN 487 (591)
T ss_pred CCCceE-EEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC--------------CCc-eeecc
Confidence 21 221 111121110000 1235799999999999888765 4666664433211 111 11000
Q ss_pred -EEEee-ccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 340 -VKVMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 340 -~~~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
..... ....+.++.|.+++. |+++..++...+|-
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred cEEeecccCCccccceEecCCE-EEEEecCCCCceEE
Confidence 11111 233468899999997 45666655444444
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.79 E-value=5.4 Score=44.78 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=73.0
Q ss_pred eEEEEEeCCCC-------EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC
Q 003360 286 LTALYYDGTSR-------VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 358 (826)
Q Consensus 286 V~~l~fsp~~~-------~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 358 (826)
|+.+.+.|+.. .-++|-.|..|.=||.+.+.. ....+..+++. .....-.|.+-..+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy-----------~~k~nFsc~aTT~sG 442 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQY-----------STKNNFSCFATTESG 442 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc----ceeeeeecccc-----------ccccccceeeecCCc
Confidence 77777877643 235677888899999884322 11111111111 113345667777777
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++|+|+.+|-||+||..... - .....+...+|+.+.... ||.+|+ |+-+..+.+.+..
T Consensus 443 -~IvvgS~~GdIRLYdri~~~-A--KTAlPgLG~~I~hVdvta------dGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 -YIVVGSLKGDIRLYDRIGRR-A--KTALPGLGDAIKHVDVTA------DGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred -eEEEeecCCcEEeehhhhhh-h--hhcccccCCceeeEEeec------cCcEEE-EecccEEEEEEEe
Confidence 79999999999999973322 1 122346778899888876 577665 4557777777764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.73 E-value=25 Score=41.25 Aligned_cols=158 Identities=6% Similarity=0.016 Sum_probs=90.5
Q ss_pred EEEEEeeCCCeEEEec-C----CcEEEeccC-CCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCC---cee
Q 003360 196 TAMKLITGNSFILSSA-D----EDYSLLAKS-VPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCP---LFL 266 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d----~~i~~w~~~-~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~---~~~ 266 (826)
..+.+++++.++++.+ + .++...+.. ......+.+. ++..+.++|++... .++.|.+.|.... ...
T Consensus 238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~---~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~ 312 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA---RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA 312 (635)
T ss_pred ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH---HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcc
Confidence 4567788888887764 1 222222211 1122222111 11125567776555 3678999999540 111
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.+..+. -+.....|.++||++++++++. +.+|.|+|+.+......+.+ +-.... +.....
T Consensus 313 v~~yIP---------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-------~~~~~v---vaevev 373 (635)
T PRK02888 313 LTRYVP---------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-------KPRDAV---VAEPEL 373 (635)
T ss_pred eEEEEE---------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-------CccceE---EEeecc
Confidence 222222 2246678999999998877655 88999999986532111110 000111 111112
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
.-.-...+|.++|....+-.-|..|..||+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22245568999998888889999999999876
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.55 E-value=25 Score=40.76 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCC-----CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDIS-----SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~-----~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+|.|.-+|+.+++.+.+........ .+... .+. -..+..|++++.||.|+.+|..+|+.+-++.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~---~~~---~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG---GSL---ATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccC---cce---EecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 46788889999999887665431100 01100 010 0136789999999999999999999997754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.19 E-value=13 Score=37.39 Aligned_cols=123 Identities=12% Similarity=0.205 Sum_probs=74.2
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC------CCcEEEE-EeCCCC
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ------SGMVRIF-KLKYEP 316 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~------dg~V~iw-d~~~~~ 316 (826)
..|..+...+.|.+|++......+++.+. .-+.|..+.++..|.+|++==. ...+|+| +|+...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 45544466678999999644433334333 1168999999999999998422 2277876 455331
Q ss_pred CccccceE-EEeec-------CC-CCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 317 HAIENSFL-SFTGS-------KK-GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 317 ~~~~~~~~-~i~~s-------~~-~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
.. ...+. .+.+. +. +.+.. +...+...++.|++..|...-|++|+.+ ++.+|.+.....
T Consensus 100 ~~-~~~v~vRiaG~~v~~~~~~~~~~qle---iiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~ 167 (215)
T PF14761_consen 100 EE-NSPVRVRIAGHRVTPSFNESSKDQLE---IIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTI 167 (215)
T ss_pred cc-CCcEEEEEcccccccCCCCccccceE---EEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEE
Confidence 11 01111 11121 01 11222 4556667789999999977678888866 678998765443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.18 E-value=3 Score=50.19 Aligned_cols=102 Identities=8% Similarity=0.134 Sum_probs=61.0
Q ss_pred EEEEEecCCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 360 HLAVGSDQGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
-..+|-.+..+..||.|-.. ++.............+|++-. ...+|++|+.+|.|++||. .|+.-.+ .
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~-~g~~AKT--~ 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-------EDGYIAVGSNKGDIRLYDR-LGKRAKT--A 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec-------CCceEEEEeCCCcEEeecc-cchhhhh--c
Confidence 45678888889999998643 331111000112223333322 3788999999999999994 3533222 1
Q ss_pred cCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 438 HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 438 ~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
-+.....++.+.. +.++.+||+.|+..+-|++..
T Consensus 614 lp~lG~pI~~iDv----------------------------t~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 LPGLGDPIIGIDV----------------------------TADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCCCCCCeeEEEe----------------------------cCCCcEEEEeecceEEEEEEe
Confidence 1222233343332 346679999999999998864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.90 E-value=16 Score=39.52 Aligned_cols=211 Identities=14% Similarity=0.089 Sum_probs=103.8
Q ss_pred EEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC--CCCceeeeeecc
Q 003360 198 MKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV--SCPLFLLILSLK 272 (826)
Q Consensus 198 ~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~i~~l~ 272 (826)
.+++.++++++... .-.|.+-+.....+... .+..|....+....+-+.+-+.||++.-..+ .++..+. .
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e-i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-~--- 174 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGE-IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-S--- 174 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEE-EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE-E---
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeee-ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe-e---
Confidence 46677777766532 33344444333222211 1112211112112245778889999887777 3433211 0
Q ss_pred cccccccccCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee-cCCCCeEEEEEEEEeeccCCeE
Q 003360 273 QQSEKDFSLSGIPLT-ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG-SKKGNSHIIHSVKVMKINGSII 350 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~-~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~-s~~~~~~~~~~~~~~~~~~~V~ 350 (826)
..-|.....++. .=++...+..++=-+.+|.|+--|+......... ...+.. ...... .+ .+.-.
T Consensus 175 ---t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~-----Wr----PGG~Q 241 (342)
T PF06433_consen 175 ---TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADG-----WR----PGGWQ 241 (342)
T ss_dssp ---EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTT-----EE----E-SSS
T ss_pred ---ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccC-----cC----Cccee
Confidence 011112222222 2244555555665788898888888744211000 000000 000000 00 22223
Q ss_pred EEEEccCCCEEEEEec--------CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCC
Q 003360 351 SLNMNRNSQHLAVGSD--------QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDS 419 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~--------dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg 419 (826)
-+++++..++|.+--. |+ .|-++|+.+++.+....+. .++.+|..+.- +.++|++.+ .++
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd-----~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQD-----DKPLLYALSAGDG 312 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESS-----SS-EEEEEETTTT
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccC-----CCcEEEEEcCCCC
Confidence 3556554444443211 11 4788899999999666542 25678888763 466787665 578
Q ss_pred cEEEEECCCCceEEee
Q 003360 420 SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~ 435 (826)
.+.+||..+|+.+.+.
T Consensus 313 ~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEETTT--EEEEE
T ss_pred eEEEEeCcCCcEEeeh
Confidence 9999999999999885
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.00 E-value=36 Score=40.27 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=34.0
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
++.+.-+..||++++||-=..+|.|.+.+....+++..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4668889999999999999999999999988777774444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.65 E-value=28 Score=37.68 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=30.4
Q ss_pred EEEeeccCCeEEEEEccCCC-EEEE-EecCCeEEEEecCCCeeEEeee
Q 003360 340 VKVMKINGSIISLNMNRNSQ-HLAV-GSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~-~las-Gs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+.-.....++.+|+.+.+.. +|.. ...+|.+.|||..+++.+.+..
T Consensus 282 v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 282 VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 33344455688999998876 4433 3457999999999999885543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.14 Score=37.21 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 782 SKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 782 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
+|+.+|.+||=.+-+.+.-=.++|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478889999988887766667899999999999999984
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=11 Score=44.63 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=76.9
Q ss_pred eCCCCCEEEEEE------CCCcEEEE--eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-EEE
Q 003360 239 HSKVKNLFITGH------SDGAINFW--DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-VRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs------~DGtVriW--D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-V~i 309 (826)
.+++|+.++..- .|..-.|| +..+.. .. + ..+...+.-.|+|++..+++...... +++
T Consensus 357 iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---l---------t~g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 357 LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---V---------LEGHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---e---------ecCCCCCCceECCCCCceEEEecCcceEEE
Confidence 899999776554 34444444 442222 11 1 11224678899999888887754322 333
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE---EecCCCeeEE--ee
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL---LDTEGPTVLY--QK 384 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v---wD~~~~~~l~--~~ 384 (826)
.+.... ..+.-+.- ++.. ... ...+.|..+.|||||.++|.-. +|.|.| .....+.... ..
T Consensus 424 ~~~~~~-----gql~~~~v--d~ge-----~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 424 IRDPAT-----GQLARTPV--DASA-----VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred eccCCC-----ceEEEEec--cCch-----hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 332110 01110000 0000 111 2356799999999999998866 577777 5544554211 01
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.+.......+.++.|.. ++. |++++.++
T Consensus 490 ~l~~~l~~~~~~l~W~~------~~~-L~V~~~~~ 517 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRT------GDS-LVVGRSDP 517 (591)
T ss_pred EeecccCCccccceEec------CCE-EEEEecCC
Confidence 11122334467788887 344 55666544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.77 Score=46.02 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
.-+..|++|+.+|.|.+|.+.... .+. + ........-.+.+..-.++.+..+|..||.||.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g-~~~----------d--------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEG-AHS----------D--------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred ccCceEEeecccceEEEecCCccc-hHH----------H--------hhhcccccceeccccccccceeEEeccCCceee
Confidence 345789999999999999987211 000 0 000000111222333345667889999999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
|++.-.+.+- ....|. |. ++..+++.+.|+.|.+|+......+.
T Consensus 129 ~n~~p~k~~g---~~g~h~-------~~-------~~e~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 129 CNIKPNKVLG---YVGQHN-------FE-------SGEELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred eccccCceee---eecccc-------CC-------CcceeEEecCCceEEeeccccchhhh
Confidence 9997766651 111222 22 25566666677777777766555443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.64 E-value=21 Score=39.78 Aligned_cols=156 Identities=16% Similarity=0.286 Sum_probs=94.6
Q ss_pred eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCC
Q 003360 239 HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~ 314 (826)
.++.++ .+++...++.|.+.|...... +..+. -+.....++++|++..+.++.. +++|.+.|-.+
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~---------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIP---------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccce--eeEee---------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 445544 777777789999999633331 01111 1125568899999988877766 56666666553
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEE-eeecccCCC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLY-QKHIASDIS 391 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~-~~~~~~~~~ 391 (826)
+.. ...... ..+ ..++++|+|..+.+.. .+++|.++|.....+.. .........
T Consensus 150 ~~~----------------------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~ 206 (381)
T COG3391 150 NKV----------------------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG 206 (381)
T ss_pred CeE----------------------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC
Confidence 322 111111 123 8899999999776665 78999999987666552 100001122
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCceEEe
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNMLST 434 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~i~~ 434 (826)
.....+.+.+ ++..+++.-.. +.+...|..++.....
T Consensus 207 ~~P~~i~v~~------~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 207 TGPAGIAVDP------DGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCceEEECC------CCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 2334566666 56655554433 5888889887776654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=89.48 E-value=7.1 Score=45.90 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc--cCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN--RNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s--~~g~~l 361 (826)
...+.+.-+.-++..++-+....+.|||.+.+..+. -......+.|.++.|. |+|+.+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~--------------------~~~f~~~~~I~dLDWtst~d~qsi 89 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY--------------------EESFSEDDPIRDLDWTSTPDGQSI 89 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEE--------------------eeeecCCCceeeceeeecCCCCEE
Confidence 345555555545544444444579999998543211 1111336779999995 677766
Q ss_pred EEEecCCeEEEEecC-----C--C--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 362 AVGSDQGYVYLLDTE-----G--P--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 362 asGs~dG~V~vwD~~-----~--~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++-+-...|.++--. . + ..+....+......+|....|.. +..|++|+ +..+.|+|-.
T Consensus 90 LaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-------~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 90 LAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-------DGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-------CCeEEEEe-CCEEEEECCC
Confidence 655556677777431 1 1 22222333222335777777776 44555555 4567777754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.00 E-value=16 Score=33.78 Aligned_cols=124 Identities=16% Similarity=0.318 Sum_probs=80.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-----CCCEE
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-----NSQHL 361 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-----~g~~l 361 (826)
+.-.|......|+.++..|.|.|++.......... .... +.+...+..|++|+-.+ ....|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---------~~~~-----i~~LNin~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---------QDSD-----ISFLNINQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc---------ccCc-----eeEEECCCceEEEEEEecCCCCCcCEE
Confidence 34467677778999999999999987644221100 0111 55566677888887654 45678
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
++|+... +..||.....-+|... ....|.++.+... ...+.+.+++|+ +..|.-||....+..
T Consensus 68 liGt~t~-llaYDV~~N~d~Fyke----~~DGvn~i~~g~~--~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 68 LIGTQTS-LLAYDVENNSDLFYKE----VPDGVNAIVIGKL--GDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred EEeccce-EEEEEcccCchhhhhh----CccceeEEEEEec--CCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 8998874 6799998887775544 3456888887753 222355565555 677888887743333
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.76 E-value=6.7 Score=40.78 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=43.1
Q ss_pred eCCCCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 239 HSKVKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 239 ~s~~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
||++|.+|...-.| |.|-|||..... +.+.++..|+-.-..|.|.+|++.++++.. -|..-
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f---------qrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIeth 186 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF---------QRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETH 186 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEeccccc---------ceecccccCCcCcceeEEecCCcEEEEeCC--ceecc
Confidence 88888877665443 788999986332 124456678877789999999999988743 34444
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.3 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCeEEEEEccCCC---EEEEEecCCeEEEEecCC
Q 003360 347 GSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 347 ~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~ 377 (826)
+.|.++.|||... +|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.96 E-value=47 Score=36.58 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=37.9
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc-cccC---------CCCeEEEEEeCCCCEEEEEeCC-CcE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD-FSLS---------GIPLTALYYDGTSRVLVSGDQS-GMV 307 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~-~~~h---------~~~V~~l~fsp~~~~Lasgs~d-g~V 307 (826)
|+|+|+.++-.. ++.|.+++..+..... +....... +.+- -..-..+-||||++.||....| ..|
T Consensus 50 ~sP~g~~~~~v~-~~nly~~~~~~~~~~~---lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 50 WSPDGKYIAFVR-DNNLYLRDLATGQETQ---LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp E-SSSTEEEEEE-TTEEEEESSTTSEEEE---SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred eecCCCeeEEEe-cCceEEEECCCCCeEE---eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 999999988876 5689999884333211 21110000 0000 0123578999999988876443 345
Q ss_pred EEEEe
Q 003360 308 RIFKL 312 (826)
Q Consensus 308 ~iwd~ 312 (826)
+.+.+
T Consensus 126 ~~~~~ 130 (353)
T PF00930_consen 126 PEYPL 130 (353)
T ss_dssp -EEEE
T ss_pred ceEEe
Confidence 55544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.4 Score=44.20 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 243 KNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL-TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V-~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
+.-++.|+.||.|.+|... .... ..+. ..-...| ..|.--.++.+.+++..||.||.|+...+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~---~d~~-------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-- 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH---SDRV-------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-- 137 (238)
T ss_pred CceEEeecccceEEEecCCccchH---HHhh-------hcccccceeccccccccceeEEeccCCceeeeccccCcee--
Confidence 4578999999999999983 2210 0010 0000122 22222334568999999999999998743321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEE--ecCCeEEEEecC
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVG--SDQGYVYLLDTE 376 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasG--s~dG~V~vwD~~ 376 (826)
-..+.|. .++..+..+..+.++++. |.|..++.|++.
T Consensus 138 -------------------g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 138 -------------------GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred -------------------eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 1111222 344444445555566666 666666666664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=87.46 E-value=28 Score=38.89 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=20.6
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCC
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGP 378 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~ 378 (826)
..-|+.|.+|.|.++|.+.+ .+|.|+.||+..+
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 34589999999999987766 5899999999765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.32 E-value=28 Score=39.38 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=78.1
Q ss_pred CCEEEEEEeeCCCeEEEec---CC--cEEEeccCCCceeec-ccccCCcceeeCCCCCEEE-EEECCCcEEEEeC--CCC
Q 003360 193 SSITAMKLITGNSFILSSA---DE--DYSLLAKSVPPLLDF-ETKLKDGSQSHSKVKNLFI-TGHSDGAINFWDV--SCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~---d~--~i~~w~~~~~~~~~~-~~~h~g~V~~~s~~~~~l~-Tgs~DGtVriWD~--s~~ 263 (826)
..+..-+|++++..++... .+ .+.+++......... ...-....+.|+|||+.|+ +...||...||=+ .+.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 3444556777777766543 22 233333222111111 1112223334999998655 5566887776654 444
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.+ ..|.. ....-+.=.|+|+|+.++ +.+..|.-.||-...... ....++ .
T Consensus 273 ~~---~~Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----~~~riT--------------~ 323 (425)
T COG0823 273 NL---PRLTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----QVTRLT--------------F 323 (425)
T ss_pred cc---eeccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----ceeEee--------------c
Confidence 42 11221 011112457899998766 455667666666653211 011111 1
Q ss_pred eeccCCeEEEEEccCCCEEEEEecC-Ce--EEEEecCCCe
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQ-GY--VYLLDTEGPT 379 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~d-G~--V~vwD~~~~~ 379 (826)
..+.-..-.|+|+|.+++..+.. |. |.+.|+.++.
T Consensus 324 --~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 324 --SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred --cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 11111266799999999877743 44 5555554443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.87 E-value=40 Score=39.82 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=54.0
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.++-+.-|..++..++-+....+.|||.+.+.+.+.... .....|..+.|... +|++.+++.+-...|.++...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEcc
Confidence 345555566665445544555799999999987765543 45778999999864 268889999999999999764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=86.81 E-value=41 Score=35.16 Aligned_cols=151 Identities=12% Similarity=0.075 Sum_probs=85.9
Q ss_pred CEEEEEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe-C-CCCce
Q 003360 194 SITAMKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD-V-SCPLF 265 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD-~-s~~~~ 265 (826)
.+...+.++++..++... ++. +.++.......... .+ ..+.. |++++.+.+....+...+++. . .+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678889999998877644 443 44444333222211 11 13333 899988888777777778774 2 22221
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE-EEE
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD---QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH-SVK 341 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs---~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~-~~~ 341 (826)
. ..+... ... ..|+.+.++|||..+|.-. .++.|.+=-+..+.. +....+- ...
T Consensus 102 -~-~~v~~~-----~~~-~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~--------------g~~~~l~~~~~ 159 (253)
T PF10647_consen 102 -P-VEVDWP-----GLR-GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD--------------GVPRRLTGPRR 159 (253)
T ss_pred -e-EEeccc-----ccC-CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC--------------CCcceeccceE
Confidence 1 111100 011 2899999999998877655 356777766653322 1011000 011
Q ss_pred Ee-eccCCeEEEEEccCCCEEEEEecCCe
Q 003360 342 VM-KINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 342 ~~-~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
.. .....+++++|.+++.+++.+...+.
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 11 12457999999999987777665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=86.65 E-value=67 Score=38.97 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.8
Q ss_pred EecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 133 IISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 133 ~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
+.....+|....+..++|+++++.|.+||...
T Consensus 149 i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 149 IKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 33344667777889999999999999999865
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.35 E-value=70 Score=37.82 Aligned_cols=67 Identities=10% Similarity=0.244 Sum_probs=38.2
Q ss_pred eCCCCCEEEEEECCCc-----EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 239 HSKVKNLFITGHSDGA-----INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGt-----VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
..-++.+++.|+.||. |..||........+..+. .....+..+. -++...++|+.|| +|.
T Consensus 472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--------~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--------SPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--------cccccccEEE--ECCEEEEEecccCccccceeE
Confidence 3446678899988873 777888666654432222 1112222222 2567788888776 455
Q ss_pred EEEeCCC
Q 003360 309 IFKLKYE 315 (826)
Q Consensus 309 iwd~~~~ 315 (826)
.||..++
T Consensus 542 ~ydp~~d 548 (571)
T KOG4441|consen 542 CYDPETD 548 (571)
T ss_pred EcCCCCC
Confidence 5655533
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.35 E-value=51 Score=35.37 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred eCCCeEEEecCC-cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc
Q 003360 202 TGNSFILSSADE-DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD 278 (826)
Q Consensus 202 ~~~~~l~~~~d~-~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~ 278 (826)
.++...+++..+ .++--+....+.... .+-.+.+.. .+++|++++++..-....-||.-.....+ ..
T Consensus 113 ~~~~~~l~~~~G~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~---~~------ 182 (302)
T PF14870_consen 113 GDGSAELAGDRGAIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP---HN------ 182 (302)
T ss_dssp ETTEEEEEETT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE---EE------
T ss_pred CCCcEEEEcCCCcEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE---Ec------
Confidence 344444444433 333334444343322 333455655 78999988888666666778873333222 00
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccC
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRN 357 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~ 357 (826)
......|..|.|.|++.+.+++ ..|.|+.=+.... .. .+++. ..-....+ .+..|+|.++
T Consensus 183 -r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~-------~~--~w~~~--------~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 183 -RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD-------GE--TWSEP--------IIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp ---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE-------EE--EE-----------B-TTSS--S-EEEEEESSS
T ss_pred -cCccceehhceecCCCCEEEEe-CCcEEEEccCCCC-------cc--ccccc--------cCCcccCceeeEEEEecCC
Confidence 1123689999999998876655 8888877662210 00 00000 00001122 3899999999
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
....|+|. .|++ +.....++-=...............+.|.. .+.-++.+.+|.|.-|
T Consensus 244 ~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-------TTEEEEE-STTEEEEE
T ss_pred CCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC-------CCceEEECCCcEEEEe
Confidence 87777665 4444 445555543322222234455688899987 5667778888877654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.34 E-value=52 Score=35.45 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=65.9
Q ss_pred CeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
.-+.|+|+||++.|..+... +.|.-|++...... ..+.... +......+..-.++...+|.+.++
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-----------~~~~~~~---~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-----------IGGRRGF---VDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-----------cCCcceE---EEccCCCCCCCceEEeCCCCEEEe
Confidence 34689999999888887664 66777776521000 0111000 111123455677888888987766
Q ss_pred EecCC-eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 364 GSDQG-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 364 Gs~dG-~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
+..+| .|.+|+.. ++.+....+.. ..+++++|.-. +.+.|++.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~-----~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGGP-----DLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCC---CCCccceEeCC-----CcCEEEEEec
Confidence 66665 89999998 77775444322 46677777652 3455554443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.18 E-value=7.2 Score=47.72 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=63.8
Q ss_pred CCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 284 IPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 284 ~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
.-+.++.|.|.- ...++...|+.|++..+..... . +..++....++|++|+|-|+.++
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~----------------~-----v~s~p~t~~~Tav~WSprGKQl~ 214 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ----------------N-----VTSFPVTNSQTAVLWSPRGKQLF 214 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhh----------------h-----hcccCcccceeeEEeccccceee
Confidence 456788888864 3567888899999888763211 0 22234456689999999999999
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccC-CCCCeeEEEEee
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASD-ISSGIVSLQFET 401 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~-~~~~V~sl~f~~ 401 (826)
+|...|++.-|-..- .+......... -...|.+|.|..
T Consensus 215 iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 215 IGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred EecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEec
Confidence 999999987776533 22212221111 135688888876
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.82 E-value=96 Score=38.02 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=89.8
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC------CEEEEE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS------RVLVSG 301 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~------~~Lasg 301 (826)
|...++++. .+.+...++.++.++.+-..++....+.....- .-...|.|+.++|.+ +++++|
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~---------~~e~evaCLDisp~~d~~~~s~~~aVG 554 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK---------EFEYEVACLDISPLGDAPNKSRLLAVG 554 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh---------eecceeEEEecccCCCCCCcceEEEEE
Confidence 544555554 444444566666666666666632222111111 112689999999752 489999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
.++..+.+--+-.+ ..... +. +.....+..|.-.+|--|..+|.++..||.+.-+-+...+.
T Consensus 555 ~Ws~~~~~l~~~pd----------------~~~~~-~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 555 LWSDISMILTFLPD----------------LILIT-HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred eecceEEEEEECCC----------------cceee-eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc
Confidence 99888776655421 11100 00 00011133455566666678999999999987665544443
Q ss_pred EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 381 LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 381 l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.+.-.- ..-...|++=-.|... ....+++++ |.-..+|..+ ++++-
T Consensus 618 ~lsd~Kk~~lGt~P~~Lr~f~sk-----~~t~vfa~s-drP~viY~~n-~kLv~ 664 (1096)
T KOG1897|consen 618 QLSDRKKVTLGTQPISLRTFSSK-----SRTAVFALS-DRPTVIYSSN-GKLVY 664 (1096)
T ss_pred eEccccccccCCCCcEEEEEeeC-----CceEEEEeC-CCCEEEEecC-CcEEE
Confidence 322111 0112234444456553 345555554 5555555544 55543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.80 E-value=19 Score=42.88 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc--ee-eeeeccc-c---cc-cccc-cCCCCeEEEEEe--CCCCEEEEEeCCCcEEEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPL--FL-LILSLKQ-Q---SE-KDFS-LSGIPLTALYYD--GTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~--~~-~i~~l~~-~---~~-~~~~-~h~~~V~~l~fs--p~~~~Lasgs~dg~V~iw 310 (826)
..++|+.|..||.|.+|....-. .. .....+. . .. ..+. --+.+++.|+++ ...+++|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 44689999999999999751100 00 0000000 0 00 0011 112689999999 889999999999999998
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----C-EEEEEecCCeEEEEec
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----Q-HLAVGSDQGYVYLLDT 375 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----~-~lasGs~dG~V~vwD~ 375 (826)
-+...... ..+ .....+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 193 af~l~~~r--------------~~~----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDER--------------FYH----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccc--------------ccc----ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87642110 000 1111234457888885533 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.2 Score=30.95 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCeEEEEEeCCCC---EEEEEeCCCcEEEEEeCCC
Q 003360 284 IPLTALYYDGTSR---VLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 284 ~~V~~l~fsp~~~---~Lasgs~dg~V~iwd~~~~ 315 (826)
++|.++.|+|+.. +|+-+-.-|.|.|+|++.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3789999998654 7888878899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=85.16 E-value=3.1 Score=46.55 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=64.4
Q ss_pred EEEEccCCCEEEEEecCCeEEE---Eec-CCC------eeEEeeecccCCCCCeeEEEEeecccCC-----CCCcEEEEE
Q 003360 351 SLNMNRNSQHLAVGSDQGYVYL---LDT-EGP------TVLYQKHIASDISSGIVSLQFETCSLQG-----FEKNFLVIA 415 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~dG~V~v---wD~-~~~------~~l~~~~~~~~~~~~V~sl~f~~~~~~~-----~d~~~l~sg 415 (826)
.++.+|++..||.+..+..|.+ |+. +.+ .+.....+.......|+++.+.|..... .|..++++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988877665 533 111 1222222222333689999999974433 568899999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEe
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL 451 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l 451 (826)
.++|.|++|... |.++.....| +..++.+.+.
T Consensus 86 ~ssG~vrfyte~-G~LL~~Q~~h---~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVLLLSQLLH---EEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chHHHHHhcC---ccceEEEEec
Confidence 999999999974 8776554344 3445555443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.09 E-value=11 Score=46.24 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=77.2
Q ss_pred EEeccCc-cEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCce
Q 003360 149 LLLGKSG-HFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPL 225 (826)
Q Consensus 149 iv~~~~G-~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~ 225 (826)
++.+.+| .|+.||...+....+... + +-.+.......-..+.++.|+|.-..-.+. . |..|++........
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~-~-----pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~ 190 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETT-V-----PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ 190 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhc-c-----ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence 3344444 567899988755442221 0 111111112222345677788766554443 3 77777663322111
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.....+....++| |+|.|..++.|-..|++.=|-.+.... ..+... .+. ..+.|.+|+|-....+|++
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~P---p~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEP---PVE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCC---CcC-CCcceeEEEEecceeEEEE
Confidence 1111234455566 999999999999999999888765542 112211 111 1378999999877666554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.50 E-value=14 Score=44.00 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=78.8
Q ss_pred CeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc--cC
Q 003360 285 PLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN--RN 357 (826)
Q Consensus 285 ~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 357 (826)
.|+.|.... ....|+.+..||.|.+|..+.--..... ..... .++ ..+...-.......+.+|+++ ..
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r----~~i~P~f~~~v~~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSR----LKIKPFFHLRVGASAWGLDIHDYKK 176 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-ccc----ccCCCCeEeecCCceeEEEEEecCc
Confidence 455665543 3468999999999999987522000000 00000 000 000001112235578999998 78
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC-cEEEEEECCCcEEEEEC
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK-NFLVIATKDSSVLVLDS 426 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~-~~l~sgs~Dg~V~iwd~ 426 (826)
.+++|+++....|.||-.....--+.......+...|-+|.|.+..... +| ..|++++-.|.+.+|+.
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~-~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP-NGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC-ccceEEEEEeccCcEEEEEE
Confidence 8899999999988888664421110011112355678899999864332 13 37778888998888776
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.02 E-value=6 Score=44.74 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=59.2
Q ss_pred EEEEeeCCCeEEEec--CCcEEEe--ccCCCceeecccccCCccee---eCCCCCEEEEE-ECCCcEEEEeC--CCCcee
Q 003360 197 AMKLITGNSFILSSA--DEDYSLL--AKSVPPLLDFETKLKDGSQS---HSKVKNLFITG-HSDGAINFWDV--SCPLFL 266 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~--d~~i~~w--~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tg-s~DGtVriWD~--s~~~~~ 266 (826)
.-+|+|||+.++.+. |+...+| +........ ..+..++.. |+|+|+.|+-. ...|.-+||-. .+....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 346999999998866 7777777 333322222 223334433 99999977655 44566566554 443311
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEeC
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GM--VRIFKLK 313 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~--V~iwd~~ 313 (826)
. + ......=..-.|+|+++.++..+.. |. |.++++.
T Consensus 320 r---i--------T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 320 R---L--------TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred E---e--------eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 1 1 1122122266789999988877653 44 4444443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.95 E-value=21 Score=44.79 Aligned_cols=156 Identities=12% Similarity=0.190 Sum_probs=84.1
Q ss_pred eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEE--------EeCCCCEEEEEeCCCcEEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALY--------YDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~--------fsp~~~~Lasgs~dg~V~i 309 (826)
|.+-++.-+ +-|..+.+|+. ++..... ++.-...|..|. |-|.=++|.+-..--.|.|
T Consensus 87 FpeI~RaWi--TiDn~L~lWny~~~~e~~~-----------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 87 FPEIGRAWI--TIDNNLFLWNYESDNELAE-----------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred chhhcceEE--EeCCeEEEEEcCCCCcccc-----------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 444455444 45788999999 5444211 111112333333 3333345555555556778
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec--CCC---------
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT--EGP--------- 378 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~--~~~--------- 378 (826)
+-+......+...+.. ++ .+.......|+|+....+|+ +..|+.||. ||.+ ...
T Consensus 154 lgV~~~~~~~~~~~f~-----~~-------~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~--lyEl~Yq~~~gWf~~rc~ 218 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFN-----TS-------FKISVDGVSVNCITYTENGR-IFFAGRDGN--LYELVYQAEDGWFGSRCR 218 (1311)
T ss_pred EEEEeccccCcccccc-----cc-------eeeecCCceEEEEEeccCCc-EEEeecCCC--EEEEEEeccCchhhcccc
Confidence 7765443322111110 00 11222234589999888886 555566664 4443 111
Q ss_pred eeEEe-----------eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 379 TVLYQ-----------KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 379 ~~l~~-----------~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++-.+ ......+.++|..+.... +-+.+.+-+.-|+|.+||+..
T Consensus 219 Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~------SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 219 KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN------SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccCchhHHHHhhhhhhcCCCCCCCcceeeEecc------ccceeeeeccCceEEEEEccC
Confidence 00000 011124566888888877 378899999999999999985
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.2e+02 Score=36.96 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=55.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC-CC---C-ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKY-EP---H-AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN- 357 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~-~~---~-~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~- 357 (826)
..|..|.++|+|.+||..+..|.+.+.=-+. +. . .....+.+-+..-+.. +-.......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~------~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER------FFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh------hccCCCCceEEEEEEcCCC
Confidence 5789999999999999998887555443221 10 1 0111111111110000 001112345999999986
Q ss_pred --CCEEEEEecCCeEEEEecCCCe
Q 003360 358 --SQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 358 --g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+.+|++=+.|+++|+||+....
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCC
Confidence 4789999999999999997653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.11 E-value=19 Score=45.09 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=49.9
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEecCCc-EEE-eccCCCceee---------------------cccccCCccee--eC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSADED-YSL-LAKSVPPLLD---------------------FETKLKDGSQS--HS 240 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~-i~~-w~~~~~~~~~---------------------~~~~h~g~V~~--~s 240 (826)
++++.....|+|+.+..+|+.+++|-|+. +-+ |.....|+.. +...+..+|.. ..
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 44555567899999999999999988553 222 2222223222 11123444544 55
Q ss_pred CCCCEEEEEECCCcEEEEeCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+.++.+=+.-|+|++||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 6677889999999999999943
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.48 E-value=43 Score=39.51 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=41.6
Q ss_pred eCCCCCEEEEEECCC------cEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEE
Q 003360 239 HSKVKNLFITGHSDG------AINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG------tVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~i 309 (826)
..-++.+++.|+.++ +|..||... .....+..+.. .......+.+ ++.+.++|+.+| .|..
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--------~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--------RLSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--------ccccceeEEE--CCEEEEEeeecceeehhh
Confidence 344577888887652 467888865 56544333331 1122223322 678889999998 7778
Q ss_pred EEeCCCC
Q 003360 310 FKLKYEP 316 (826)
Q Consensus 310 wd~~~~~ 316 (826)
||..+++
T Consensus 530 yd~~~~~ 536 (557)
T PHA02713 530 FNVYTYE 536 (557)
T ss_pred cCccccc
Confidence 8887653
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.3e+02 Score=36.82 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.5
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
..++.|.+++...-+.+|+....||+|.++|..+.+.+...
T Consensus 257 ~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 257 TLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred ccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 34677999999988889999999999999999887666433
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=82.03 E-value=1.2e+02 Score=36.10 Aligned_cols=160 Identities=13% Similarity=0.198 Sum_probs=83.3
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMN 470 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~ 470 (826)
...|..+.|.. ++..+++.-.+|.|.+||...+..-..-.........+..-.++.
T Consensus 129 ~~kvv~Ik~~~------~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~------------------ 184 (670)
T PF10395_consen 129 DDKVVGIKFSS------DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVN------------------ 184 (670)
T ss_pred ccceEEEEEec------CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhc------------------
Confidence 45788899986 488999999999999999943322111001111111111101111
Q ss_pred CCCCCCCCC---CCCCEEEEee-c---CcEEEEeccccccccceeeeeee---cCCCCceeeEeeeeCCceEEEEEEeec
Q 003360 471 KGSPKENAV---PKQWFVLLCS-E---KAACAYSLSHAVQGVKKVLYKKK---FHSSSCCWASTFYSGSDVGLMLLFTSG 540 (826)
Q Consensus 471 ~~~~~~~~~---~~~~~vv~~s-e---~~irv~sl~~~~~g~~k~~~k~~---~~~~~c~~~~~~~~~~~~~lv~~~~~G 540 (826)
.+. ..+.++++|. + -..|+|.+.. ....-..++..- +....|.++. ..|.+.-+.++
T Consensus 185 ------~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~-~~~~~~El~s~~~e~~~~~~s~f~Y------~~G~LY~l~~~ 251 (670)
T PF10395_consen 185 ------DFELENGKDLLLTVSQLSNSKLSYKLISLSN-ESSSIFELSSTILENFGLEDSKFCY------QFGKLYQLSKK 251 (670)
T ss_pred ------ccccccCCceEEEEEEcCCCcEEEEEEEecc-CCcceEEeehheeccCCcccceEEE------eCCEEEEEeCC
Confidence 111 2234555555 3 2688888821 001111222111 1112233321 24444445899
Q ss_pred eEEEeccCCccccccccccc---------eeecCCCCCCCcccceeccCCCcEEEEcCCee
Q 003360 541 KFEIRSLPELSLLKETSIRG---------FVYLTPKPNSLSNTLMCSSWDGELIMVNGNQE 592 (826)
Q Consensus 541 ~I~i~slP~L~~l~~~sl~~---------~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e 592 (826)
.|.+++||.++.....++.. +++.||. ...+-.+.+..|.+++--.|
T Consensus 252 ~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s-----~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 252 TISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS-----PNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred EEEEEEcCCceEEEEEEechhhccccccceEeecCC-----CCeEEEEcCCEEEEEeehhh
Confidence 99999999999888876662 2444321 12233455667777776555
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.81 E-value=1.5 Score=51.91 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=82.8
Q ss_pred CcEEEEeC---CCCceeeeeecccccccccccCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCc----cccc
Q 003360 253 GAINFWDV---SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHA----IENS 322 (826)
Q Consensus 253 GtVriWD~---s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~----~~~~ 322 (826)
|..-|||+ .+.. ++ .+. +......+..+.-|.||| +.-+++.+..+|+|++..+.+.... |...
T Consensus 153 g~lfVy~vd~l~G~i-q~--~l~---v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~ 226 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEI-QP--QLE---VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQR 226 (1283)
T ss_pred hhhheeehHhhcccc-cc--ceE---EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCC
Confidence 67889998 3332 11 111 111123345667777776 5678888999999999888754210 1000
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-----CCeeEEeeecccCCC-CCeeE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-----GPTVLYQKHIASDIS-SGIVS 396 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-----~~~~l~~~~~~~~~~-~~V~s 396 (826)
...+.+-. .+.+.--..||||+.+|.++.||.++.|.+. ...|++... .|. .+-.|
T Consensus 227 ~~d~a~~~---------------~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk---phd~~p~vC 288 (1283)
T KOG1916|consen 227 VTDMAFFA---------------EGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK---PHDKHPRVC 288 (1283)
T ss_pred cccHHHHh---------------hchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC---CCCCCCcee
Confidence 00000000 1111112279999999999999999888753 233443332 233 23333
Q ss_pred EEEeecccCCCC---CcEEEEEEC-CCcEEEEECCCCceE
Q 003360 397 LQFETCSLQGFE---KNFLVIATK-DSSVLVLDSDNGNML 432 (826)
Q Consensus 397 l~f~~~~~~~~d---~~~l~sgs~-Dg~V~iwd~~tg~~i 432 (826)
.-|........+ -.++++++. +..+++|.....+|+
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 223332111111 234555554 346899998877766
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=81.02 E-value=93 Score=34.21 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=26.7
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCc
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 46 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~ 46 (826)
...+....| +|+|+.||-.+ ++.|.+++..++
T Consensus 42 ~~~~~~~~~-sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 42 PPKLQDAKW-SPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTS
T ss_pred cccccccee-ecCCCeeEEEe-cCceEEEECCCC
Confidence 457888999 78999999995 689999998876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=98 Score=34.50 Aligned_cols=203 Identities=11% Similarity=0.158 Sum_probs=118.8
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-ccccCCccee-eCCCCCEEEEEEC---CCcEEEEeCCCCceeee
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-ETKLKDGSQS-HSKVKNLFITGHS---DGAINFWDVSCPLFLLI 268 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-~~~h~g~V~~-~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i 268 (826)
..+++++.+..+.... +..+.+.+......... ..+. ....- ++++++.+..+.. +++|.+.|...... +
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--T 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--E
Confidence 4566777777555433 57777776443222222 1111 11111 8888865555544 67787777743332 1
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
..+. .-..+ ..+++.|++..+.+.. .++.|.++|....... . .+ ... ......
T Consensus 154 ~~~~--------vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------~--~~-~~~--------~~~~~~ 207 (381)
T COG3391 154 ATIP--------VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------R--GS-VGS--------LVGVGT 207 (381)
T ss_pred EEEe--------cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------c--cc-ccc--------ccccCC
Confidence 2221 11123 7899999999777665 6789999996643221 0 00 000 001122
Q ss_pred CeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEE
Q 003360 348 SIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLV 423 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~i 423 (826)
.-..+.++++|.++.+.... +.+.+.|..++........ .+.. ....+.+.| ++..+.+.... +.+.+
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p------~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDP------AGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc-cccC-CCCceeECC------CCCEEEEEecCCCeEEE
Confidence 24567899999876665544 5999999998887733111 1222 344567777 58888887554 88999
Q ss_pred EECCCCceEEee
Q 003360 424 LDSDNGNMLSTN 435 (826)
Q Consensus 424 wd~~tg~~i~~~ 435 (826)
.|..+.......
T Consensus 280 id~~~~~v~~~~ 291 (381)
T COG3391 280 IDGATDRVVKTG 291 (381)
T ss_pred EeCCCCceeeee
Confidence 999988777664
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.91 E-value=25 Score=39.73 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=65.8
Q ss_pred eccCCeEEEEEccCCC-------EEEEEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 344 KINGSIISLNMNRNSQ-------HLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~-------~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.....|+-+.+.|+.. .-++|-.|..|.=||.|-... . ..+... ....+.-.|+..... .+.++++|
T Consensus 373 k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k--l~~~q~-kqy~~k~nFsc~aTT--~sG~Ivvg 447 (644)
T KOG2395|consen 373 KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK--LAVVQS-KQYSTKNNFSCFATT--ESGYIVVG 447 (644)
T ss_pred eccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce--eeeeec-cccccccccceeeec--CCceEEEe
Confidence 3344466666666542 134577788899999873222 1 111111 112222333332111 47899999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
|.+|.|++||. .|..-.+. -|.....+.-+. .+.++..|++.++..+-|
T Consensus 448 S~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVd----------------------------vtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 448 SLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVD----------------------------VTADGKWILATCKTYLLL 496 (644)
T ss_pred ecCCcEEeehh-hhhhhhhc--ccccCCceeeEE----------------------------eeccCcEEEEecccEEEE
Confidence 99999999997 46544431 122211111111 233456888888888888
Q ss_pred Eecc
Q 003360 496 YSLS 499 (826)
Q Consensus 496 ~sl~ 499 (826)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 8775
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=80.48 E-value=7.3 Score=39.75 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=49.0
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-e---ccc-------CCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-H---IAS-------DISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~---~~~-------~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..++..+. ..+.+|++-+.+|.+++||+.+.++++.. . +.. .....|+++.... +|.-+++
T Consensus 12 gs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~------~G~PiV~ 83 (219)
T PF07569_consen 12 GSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS------NGVPIVT 83 (219)
T ss_pred CCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC------CCCEEEE
Confidence 44555554 45678999999999999999999887543 1 111 2334566565554 3544544
Q ss_pred EECCCcEEEEECCCCc
Q 003360 415 ATKDSSVLVLDSDNGN 430 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~ 430 (826)
- ++|..+.|+..-+.
T Consensus 84 l-sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 84 L-SNGDSYSYSPDLGC 98 (219)
T ss_pred E-eCCCEEEeccccce
Confidence 4 45778888877544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 187 bits (474), Expect = 3e-49
Identities = 84/653 (12%), Positives = 209/653 (32%), Gaps = 72/653 (11%)
Query: 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS--ILNLKTEECGTQIT 59
G ++ T +V + + P + + + ++ W S ++ +T
Sbjct: 200 GDFSEKTNEKRTPKVIQSLY-HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV 258
Query: 60 PICKLNLGYKLDKIPISSLKWVYA-DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 118
P + IS + W+ + + + L I S N ++ T +
Sbjct: 259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318
Query: 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI---------ERYL 169
+ + + + P + L + + ++A E
Sbjct: 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378
Query: 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFE 229
+ Y S + +L T + + + A + LL
Sbjct: 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQ----NKDYLLKGG 434
Query: 230 TKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS-GIPLTA 288
+ K + ++ FITGHS+G++ +D S S + + + + + +
Sbjct: 435 VRTKR-QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK 493
Query: 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL---------SFTGSKKGNSHIIH- 338
+ + + L ++G V +FK + + N ++
Sbjct: 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553
Query: 339 --------------SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384
S V G ++N N N + + G + L+D GP ++Y +
Sbjct: 554 RDRAPTGVRQGFMPSTAVHANKGKTSAIN-NSNIGFVGIAYAAGSLMLIDRRGPAIIYME 612
Query: 385 HIASD---ISSGIVSLQFETCSL--QGFEKNFLVIATKDSSVL---VLDSDNG--NMLST 434
+I S+ + ++F G+ +V T V+ +L + G ++
Sbjct: 613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLM 672
Query: 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAAC 494
++ + + + + + A + + ++KG + VL+
Sbjct: 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKG------LCIPGIVLITGFDDIR 726
Query: 495 AYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSD----VGLMLLFTSGKFEIRSLPEL 550
+L + + K +K ++ + ST +D ++ L +G + ++P+
Sbjct: 727 LITLGKS-KSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDF 784
Query: 551 SLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQRD 603
I + ++ + + + G++ + +A S ++++D
Sbjct: 785 KEQMSEHIPFPIA----AKYITESSVLRN--GDIAIRVSEFQASLFSTVKEQD 831
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 27/232 (11%), Positives = 62/232 (26%), Gaps = 29/232 (12%)
Query: 209 SSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC--PLFL 266
+ +D LA +V +D + ++ +F I + ++ +
Sbjct: 148 TDIGKDIQYLAVAVSQYMD---------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV 198
Query: 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326
+ ++ + + L + L Q G + ++
Sbjct: 199 KVQTIVHSFGEVWDLKWHEGC--HAPHLVGCLSFVSQEGTINFLEIIDNAT--------- 247
Query: 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386
+ + S+I+ + + G G+V D P V
Sbjct: 248 --DVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQ 305
Query: 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438
D S I+S+ FE + D + + + T +
Sbjct: 306 VHD--SYILSVSTAYSD---FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 29/139 (20%)
Query: 236 SQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295
+ + T DG ++ G L + Y
Sbjct: 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS--------RFRGSNLVPVVYCPQI 367
Query: 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 355
+ D + +R + + +H + + +I ++ ++
Sbjct: 368 YSYIYSDGASSLRAVPSR-------------------AAFAVHPL--VSRETTITAIGVS 406
Query: 356 RNSQHLAVGSDQGYVYLLD 374
R + GS G + + +
Sbjct: 407 RLHPMVLAGSADGSLIITN 425
|
| >1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1 Length = 63 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-05
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 767 GFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEV 815
+ SG A L E +KL + +T M +A SFS A E+
Sbjct: 10 KGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEM 58
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 86/504 (17%), Positives = 160/504 (31%), Gaps = 159/504 (31%)
Query: 1 MGG---NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 57
+ G + C + + K + +I W LNLK
Sbjct: 158 VLGSGKTWV---------ALDVCLSYKVQCK-----MDFKIF-W-----LNLKNCNSPET 197
Query: 58 ITPICKLNLGYKLDKI------PISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNE 111
+ + + L Y++D S++K +A ++ + + N L +VLLN
Sbjct: 198 VLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCL-LVLLNV 253
Query: 112 QTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFY------AFDDCQI 165
Q ++ A LS C +I+ ++ K D FL + H ++
Sbjct: 254 QN-AKAWN-AFNLS--C---KILLTTRF--KQVTD-FLSAATTTHISLDHHSMTLTPDEV 303
Query: 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAM-----------------KL--ITGNSF 206
+ LL+Y P P+EV+ P S I KL I +S
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 207 -ILSSAD-----EDYSLLAKSVP-PL---------LDFETKLKDGSQSHSKVKNLFITGH 250
+L A+ + S+ S P + + ++ H +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQ 420
Query: 251 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY-----YDGTSRVLVSGDQSG 305
+ + + + L LK + E +++L + Y +D + DQ
Sbjct: 421 PK------ESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQY- 472
Query: 306 MVRIFK-LKYEPH--AIENS---------FL--SFTGSKKGNSHIIHSVKVMKINGSIIS 351
+ + + H IE+ FL F K I H +GSI++
Sbjct: 473 ---FYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILN 522
Query: 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD--ISSGIVS--LQFETCSLQGF 407
L + Y+ +I + +V+ L F L
Sbjct: 523 T-------------------LQQLK----FYKPYICDNDPKYERLVNAILDF----LPKI 555
Query: 408 EKNFLVIATKDSSVL--VLDSDNG 429
E+N +I +K + +L L +++
Sbjct: 556 EEN--LICSKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 100/639 (15%), Positives = 171/639 (26%), Gaps = 204/639 (31%)
Query: 162 DCQ-IERYLLQYQSRSPPSAPKEV--MLKMPFLDSSITAMKLIT-----GNS----FILS 209
DC+ ++ S+ +E+ ++ D+ ++L F+
Sbjct: 34 DCKDVQDMPKSILSK------EEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 210 SADEDYSLLAKSVP-----PLLDFE---------------------------TKLKDGSQ 237
+Y L + P + KL+
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 238 SHSKVKNLFITG---------------------HSDGAINFWDVSCPLFLLILSLKQQSE 276
KN+ I G D I FW L+LK +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FW----------LNLKNCNS 194
Query: 277 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG-NSH 335
+ L L L Y D S +K H+I+ SK N
Sbjct: 195 PETVL--EMLQKLLYQIDPNWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 336 II----HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391
++ + K N + + L + L T + H + ++
Sbjct: 248 LVLLNVQNAKAWNA--------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL 451
E SL K +L +D VL N ++I A +
Sbjct: 300 PD------EVKSL--LLK-YLDCRPQDLPREVLT---TNPRRLSII-------AESI--- 337
Query: 452 NGQDGLARGANLSNV----------AGMNKGSPKENAVPKQWFVLLC--------SEKAA 493
+DGLA N +V + +N P E ++ F L
Sbjct: 338 --RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPPSAHIPTILL 392
Query: 494 CAYSLSHAVQGVKKVLYKKKFHSSSCC---WASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550
V V+ K H S + S + ++ K ++ + L
Sbjct: 393 SLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTIS-----IPSIYLELKVKLENEYAL 445
Query: 551 --SLLKETSIRGFVYLTPKPNSLSNTLMCSSWDG---ELI---MVNGNQEAFFISALRQR 602
S++ Y PK S+ L+ D I + N L +
Sbjct: 446 HRSIVDH-------YNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRM 495
Query: 603 DF--FRFLDSACQVYSYDPTLLQEGVVSASIVQTEK-KKGIFGSVLKGNKTKQAPDVERE 659
F FRFL+ ++ G + ++ Q + K I P ER
Sbjct: 496 VFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYI---------CDNDPKYER- 543
Query: 660 ETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNI 698
++ + F + + NL + DLL I
Sbjct: 544 ----LVNAILD-FL---PKIEE----NLICSKYTDLLRI 570
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 40/238 (16%)
Query: 193 SSITAMKLITGNSFILSSADEDYSLL-AKSVPPLLDFETKLKD---GSQSHSKVKN-LFI 247
+ N +L ++L +K+ L + E + H++V FI
Sbjct: 84 EHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFI 143
Query: 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307
+ G I F ++ S K E L+ D +L G++
Sbjct: 144 WADNRGTIGFQSYEDDSQYIVHSAKSDVE-------YSSGVLHKDS--LLLALYSPDGIL 194
Query: 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367
++ L + S + I + N + V DQ
Sbjct: 195 DVYNLS-------------------SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ 235
Query: 368 G-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424
+ L + T+ Y + + +G V+ + ++ + +S+ L +
Sbjct: 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG------KNMIAYSNESNSLTI 287
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 22/195 (11%)
Query: 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304
TG G ++ W++ P + + S+K E ++ GI + +V+G +
Sbjct: 82 YLATGDFGGNLHIWNLEAP-EMPVYSVKGHKEIINAIDGIGGLGIGEGA--PEIVTGSRD 138
Query: 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364
G V+++ + + + G + + N+ + + G
Sbjct: 139 GTVKVWDPR-QKDDPVANMEPVQG---------ENKRD--CWTVAFGNAYNQEERVVCAG 186
Query: 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424
D G + L D + ++ + I +G+ SL+F + N LV + + V
Sbjct: 187 YDNGDIKLFDLRNMALRWETN----IKNGVCSLEF---DRKDISMNKLVATSLEGKFHVF 239
Query: 425 DSDNGNMLSTNLIHP 439
D +
Sbjct: 240 DMRTQHPTKGFASVS 254
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 31/214 (14%), Positives = 78/214 (36%), Gaps = 36/214 (16%)
Query: 244 NLFITGHSDGAINFWDV------SCPLFLLILSLKQQSEKDFSLSGIPLTALYY--DGTS 295
+ F DG I V S FL +++ + K+F + + + + S
Sbjct: 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183
Query: 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 355
+LV+ V IF ++ T + ++ +G++ S+ ++
Sbjct: 184 -LLVALTNLSRVIIFDIR-------------TL------ERLQIIENSPRHGAVSSICID 223
Query: 356 RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415
L +G+ +G + + D ++ + + + I + Q + KN +++
Sbjct: 224 EECCVLILGTTRGIIDIWDIRFNVLI--RSWSFGDHAPITHV----EVCQFYGKNSVIVV 277
Query: 416 --TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALF 447
+ + + + + G+ + ++PS F
Sbjct: 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 20/204 (9%)
Query: 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304
ITG G I W++ +I+ S + S +T + +
Sbjct: 78 YLITGSDQGVIKIWNLKE----IIVGEVYSSSLTYDCSS-TVTQITMIPNFDAFAVSSKD 132
Query: 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAV 363
G + + K+ + E FL+ +K N ++ + L
Sbjct: 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN-----EYAVRMRAFVNEEKSLLVA 187
Query: 364 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIV-SLQFETCSLQGFEKNFLVIATKDSSVL 422
++ V + D L I + G V S+ + L++ T +
Sbjct: 188 LTNLSRVIIFDIRTLERLQI--IENSPRHGAVSSICI---DEEC---CVLILGTTRGIID 239
Query: 423 VLDSDNGNMLSTNLIHPKKPSRAL 446
+ D ++ + P +
Sbjct: 240 IWDIRFNVLIRSWSFGDHAPITHV 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 826 | |||
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.94 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.92 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.92 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.89 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.88 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.87 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.86 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.86 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.86 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.86 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.84 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.84 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.72 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.71 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.69 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.68 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.68 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.67 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.65 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.64 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.64 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.61 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.61 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.6 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.58 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.58 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.58 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.55 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.52 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.51 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.5 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.5 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.5 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.42 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.4 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.4 | |
| 1urq_A | 63 | M-tomosyn isoform; transport protein, tomosyn-snar | 99.4 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.32 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.3 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.29 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.27 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.24 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.21 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.18 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.17 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.15 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.12 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.12 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.12 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.1 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.04 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.01 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.99 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.97 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.97 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.91 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.91 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.9 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.89 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.89 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.87 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.86 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.86 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.78 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.78 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.78 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.69 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.65 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.63 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.57 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.57 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.43 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.36 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.33 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.3 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.27 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.26 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.19 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.13 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.13 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.11 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.03 | |
| 1n7s_A | 63 | Vesicle-associated membrane protein 2; neuronal sn | 98.02 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.97 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.97 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.97 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.95 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.87 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.76 | |
| 1sfc_A | 96 | VAMP 2, protein (synaptobrevin 2); membrane fusion | 97.75 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.74 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.72 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.64 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.6 | |
| 1l4a_A | 80 | Synaptobrevin; snare, snare complex, membrane fusi | 97.59 | |
| 2kog_A | 119 | Vesicle-associated membrane protein 2; synaptobrev | 97.51 | |
| 3hd7_A | 91 | Vesicle-associated membrane protein 2; membrane pr | 97.49 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.49 | |
| 3b5n_A | 61 | Synaptobrevin homolog 1; snare complex, syntaxin, | 97.45 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.44 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.4 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.33 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.31 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.25 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.2 | |
| 2nps_A | 74 | VAMP-4, vesicle-associated membrane protein 4; ves | 97.19 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.18 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.13 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.12 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.11 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.02 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.93 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.86 | |
| 1gl2_A | 65 | Endobrevin; membrane protein, membrane fusion prot | 96.84 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.79 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.79 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.66 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.59 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.52 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.51 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.49 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.49 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.37 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.36 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.35 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.22 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.17 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.03 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.01 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.91 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.77 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.37 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.2 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.09 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.73 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.62 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 94.6 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.36 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.12 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 94.08 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 93.9 | |
| 4b93_A | 189 | Vesicle-associated membrane protein 7; endocytosis | 93.85 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.79 | |
| 2nut_C | 196 | Vesicle-trafficking protein SEC22B; human copii SE | 93.29 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.28 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.13 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 92.75 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 92.7 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 92.59 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.54 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.44 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.26 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 91.81 | |
| 3kyq_A | 199 | YKT6, synaptobrevin homolog YKT6; V-snare homolog, | 91.16 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 90.44 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 89.22 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 89.15 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 88.49 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 84.8 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 84.75 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 84.33 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 84.18 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 83.92 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 80.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 80.76 |
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-50 Score=491.77 Aligned_cols=603 Identities=14% Similarity=0.136 Sum_probs=406.7
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccc--ccccccccccccccccCCCCCCcCCeEEEEEeeeC-CCCce
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNL--KTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD-GKASR 89 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~-~~~g~ 89 (826)
...|++++| +|+|.+||+|+.||.|++||++++... +.........+........-.+..+|..+.|+... +.++.
T Consensus 211 ~~~V~~v~f-spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 211 TPKVIQSLY-HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp CCCEEEEEE-CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred CCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 457999999 589999999999999999999887321 11111111111000000001245689999998853 44567
Q ss_pred EEEEccCCcCc-cceeEEEEccc----------------CCcceeEEEeecCCCceeeEEEecC-CCC-CCCCCCceEEE
Q 003360 90 LYIMGASDFVS-MNLLQIVLLNE----------------QTESRTTKLALPLSEPCIDMEIISS-SSD-PNKPKQDSFLL 150 (826)
Q Consensus 90 lli~gg~~~~~-~~~~~vl~~~~----------------~~~~~~~~~~l~~~~~~~d~~~l~~-~~~-~~~~~~~~liv 150 (826)
++++||.+.+. ...+.++.+.. ........+.+...+.+.++.+++. +++ .+.+++..+++
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence 88888765322 12444444211 0111122233345778899988873 332 22344557888
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccc
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET 230 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~ 230 (826)
++.+|.|.+||..+ +.........+..+..|.+.|++++|++....++.+. +.........+ .
T Consensus 370 ~s~dg~l~~~~~~~----------g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~------~~~~~~~~~~l-~ 432 (902)
T 2oaj_A 370 ILGNGEIETMLYPS----------GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA------LSAAQNKDYLL-K 432 (902)
T ss_dssp EETTSCEEEEETTT----------CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH------HHTTBCCCCSC-C
T ss_pred EcCCCcEEEEECCC----------CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH------HhcccCCCCcc-c
Confidence 89999999998743 1000111223345678889999999976543322111 00001111122 5
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee--eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL--ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~--i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
+|...+.+ |+|++++|+||+.||+||+||+....+.. .+.+... ...-..|...|++|+|+|++++||+|+.||+
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS-RTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech-hhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 56666666 89999999999999999999995544210 0000000 0000267889999999999999999999999
Q ss_pred EEEEEeCCCCCccc----------------------cceEEEeecCCCC-eEEEEE-EEEeeccCCeEEEEEccCCCEEE
Q 003360 307 VRIFKLKYEPHAIE----------------------NSFLSFTGSKKGN-SHIIHS-VKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 307 V~iwd~~~~~~~~~----------------------~~~~~i~~s~~~~-~~~~~~-~~~~~~~~~V~~l~~s~~g~~la 362 (826)
|+|||+.++..... .....+....+.. ...+.. ..+..|.+.|++|+|||+| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 99999986632100 0011111111110 000011 2334578899999999999 999
Q ss_pred EEecCCeEEEEecCCCeeEEeeec--c-cCCCCCeeEEEEeeccc--CCCCCcEEEEEECCCcEEEEEC---CCCceEEe
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHI--A-SDISSGIVSLQFETCSL--QGFEKNFLVIATKDSSVLVLDS---DNGNMLST 434 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~--~-~~~~~~V~sl~f~~~~~--~~~d~~~l~sgs~Dg~V~iwd~---~tg~~i~~ 434 (826)
+|+.||+|+|||++++.+++...+ . .+|...|++++|+.+.. +++++.+|++|+.|++|++||+ .+|+++.+
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 999999999999999988764333 2 27889999999992211 1112589999999999999999 88999998
Q ss_pred eeccCCC--CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeee
Q 003360 435 NLIHPKK--PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKK 512 (826)
Q Consensus 435 ~~~~~~~--~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~ 512 (826)
+..|... ...++.+..++.+.+.++.++...++.++.+... ++++++|+++.+|||+++ +.+++++.
T Consensus 671 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~------~~~~l~~~~~~ir~~~~~-----~~k~~~k~ 739 (902)
T 2oaj_A 671 LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI------PGIVLITGFDDIRLITLG-----KSKSTHKG 739 (902)
T ss_dssp EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC------CEEEEEECSSEEEEECTT-----CCCEEEEE
T ss_pred ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC------CeEEEEEeccceEEEeCc-----cccceeeE
Confidence 8777532 5677788878766666666666666666555443 478999999999999998 56788887
Q ss_pred ecCCCCceeeEe--ee-------eCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCc
Q 003360 513 KFHSSSCCWAST--FY-------SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGE 583 (826)
Q Consensus 513 ~~~~~~c~~~~~--~~-------~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~ 583 (826)
+. ..|+++++ +. ..++.+|++++++|+|++|++|+|++|.+.++.. ..+..+....+++.+|+
T Consensus 740 -~~-~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~------~~~~~~~~~~~~~~~G~ 811 (902)
T 2oaj_A 740 -FK-YPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF------PIAAKYITESSVLRNGD 811 (902)
T ss_dssp -CS-SCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS------CCCHHHHTTCEECTTSC
T ss_pred -cc-cceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc------ccccccccceEEcCCCC
Confidence 44 45888887 55 3778999999999999999999999999965432 23344567789999999
Q ss_pred EEEEcCCeeeeeeeecccCCccccCCCccccCCCCcCccccccccccccccccccceeceeeccCcCCCCCcccchhhHH
Q 003360 584 LIMVNGNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGNKTKQAPDVEREETWE 663 (826)
Q Consensus 584 i~~~~g~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 663 (826)
+++|.+|+|++++++|+++..++ ...|.||||++..||||+|+.- | -++| .+-+-
T Consensus 812 ~~~~~~~~e~~~~~~~~~~~~~~--~~~~~l~~~~~~~p~rp~~~~~--~----------~~~g-----~~~~~------ 866 (902)
T 2oaj_A 812 IAIRVSEFQASLFSTVKEQDTLA--PVSDTLYINGIRIPYRPQVNSL--Q----------WARG-----TVYCT------ 866 (902)
T ss_dssp EEEECSSSEEEEEEEESCCCCCC--CCCCBCCCTTCCCCCCCCCCTT--T----------SCSS-----CCCCC------
T ss_pred EEEEeChhheEEEEEEcCCCCCC--CCCceeeCCCCCCCCCCCcCcc--h----------hhCC-----cEeeC------
Confidence 99999999999999999888774 4569999999999999997522 1 2355 22232
Q ss_pred hHHHHHhhhcCCCCCCC
Q 003360 664 IIEELATIFSTANFQCD 680 (826)
Q Consensus 664 ~~~~~~~~f~~~~~~~~ 680 (826)
-++|..|+++++-+++
T Consensus 867 -~~~~~~l~~g~~r~~~ 882 (902)
T 2oaj_A 867 -PAQLNELLGGVNRPAS 882 (902)
T ss_dssp -HHHHHHHHHCTTCCCC
T ss_pred -HHHHHHHhcCCCCCCC
Confidence 4558889988876543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=328.89 Aligned_cols=466 Identities=14% Similarity=0.179 Sum_probs=319.5
Q ss_pred CccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee
Q 003360 3 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY 82 (826)
Q Consensus 3 ~~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~ 82 (826)
+.+++++..|...|++++| +|||++||+|+.||.|++||+... .+..+ ..+..+|..+.|..
T Consensus 47 ~~~~~~l~gh~~~V~~l~f-spdg~~las~~~d~~i~vWd~~~~-------------~~~~~----~~~~~~v~~~~~s~ 108 (577)
T 2ymu_A 47 GQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQ-------------LLQTL----TGHSSSVRGVAFSP 108 (577)
T ss_dssp SCEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSC-------------EEEEE----CCCSSCEEEEEECT
T ss_pred CCEEEEEeCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEECCCC-------------EEEEE----ECCCCCEEEEEECC
Confidence 3455667778889999999 689999999999999999996432 11111 12345788888864
Q ss_pred eCCCCceEEEEccCCcCccceeEEEEcccCCc------------------c-------------------eeEEEeecCC
Q 003360 83 ADGKASRLYIMGASDFVSMNLLQIVLLNEQTE------------------S-------------------RTTKLALPLS 125 (826)
Q Consensus 83 ~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~------------------~-------------------~~~~~~l~~~ 125 (826)
++..+++++.+. .+.++....... . ..........
T Consensus 109 ----d~~~l~~~~~d~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (577)
T 2ymu_A 109 ----DGQTIASASDDK----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180 (577)
T ss_dssp ----TSSEEEEEETTS----CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred ----CCCEEEEEcCCC----ceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCC
Confidence 345555554422 122221111000 0 0000000111
Q ss_pred CceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC
Q 003360 126 EPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS 205 (826)
Q Consensus 126 ~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~ 205 (826)
..+..+.. .++...++.++.+|.+.+||... .....+..|...|++++|+|+++
T Consensus 181 ~~v~~~~~--------~~~~~~l~~~~~d~~v~~w~~~~------------------~~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 181 SSVWGVAF--------SPDGQTIASASDDKTVKLWNRNG------------------QLLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp SCEEEEEE--------CTTSSCEEEEETTSEEEEECTTS------------------CEEEEEECCSSCEEEEEECTTSS
T ss_pred cceeeeee--------cCCCCEEEEEcCCCEEEEEeCCC------------------cEEEEEecCCCCEEEEEECCCCC
Confidence 11111111 12335677888899999998543 12345678999999999999999
Q ss_pred eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 206 FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 206 ~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
.+++++ |+.+++|+.....+..+ .+|.+.|.+ |+|++++|++++.|++|++||..+... .. +..|
T Consensus 235 ~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~---~~--------~~~h 302 (577)
T 2ymu_A 235 TIASASDDKTVKLWNRNGQLLQTL-TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL---QT--------LTGH 302 (577)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EE--------ECCC
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEE---EE--------EecC
Confidence 999988 99999998766555444 779999988 999999999999999999999866542 11 2467
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC----CccccceEEEeecCCCCeEE---------EEE------EEEe
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHI---------IHS------VKVM 343 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~---------~~~------~~~~ 343 (826)
...|++++|+|++..|++++.||.|++|+..... ..+...+..+.+++++.... ++. ....
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~ 382 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 382 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence 8899999999999999999999999999987552 22445677777877765422 111 2233
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|...|++++|+|+|++|++|+.||.|++||. +++.+... .+|...|++++|+| |+.+|++++.|++|++
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~---~~~~~~v~~~~~s~------d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVWGVAFSP------DDQTIASASDDKTVKL 452 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE---ECCSSCEEEEEECT------TSSEEEEEETTSEEEE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe---cCCCCCeEEEEECC------CCCEEEEEcCCCEEEE
Confidence 46778999999999999999999999999996 45555333 47889999999999 6999999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEeccccc
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLSHAV 502 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~~~~ 502 (826)
||.. ++.+..+..|.. .+.++.+ ++++.+++++ .++.|+||+...
T Consensus 453 w~~~-~~~~~~~~~~~~---~v~~~~~----------------------------spd~~~las~~~d~~i~iw~~~~-- 498 (577)
T 2ymu_A 453 WNRN-GQLLQTLTGHSS---SVRGVAF----------------------------SPDGQTIASASDDKTVKLWNRNG-- 498 (577)
T ss_dssp EETT-SCEEEEEECCSS---CEEEEEE----------------------------CTTSCEEEEEETTSEEEEEETTS--
T ss_pred EECC-CCEEEEEcCCCC---CEEEEEE----------------------------cCCCCEEEEEeCCCEEEEEcCCC--
Confidence 9964 777777655432 2333332 3444555555 456899999652
Q ss_pred cccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCccccee
Q 003360 503 QGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMC 577 (826)
Q Consensus 503 ~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~ 577 (826)
+.+.....+.... ..+..++++..|+....+|.|++|.++. +.+... .+.++.|. +++...++
T Consensus 499 ----~~~~~~~~h~~~v--~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~~~v~~~~fs-----~dg~~l~s 566 (577)
T 2ymu_A 499 ----QLLQTLTGHSSSV--RGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFS-----PDGQTIAS 566 (577)
T ss_dssp ----CEEEEEECCSSCE--EEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEEC-----TTSSCEEE
T ss_pred ----CEEEEEeCCCCCE--EEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcCCCCCEEEEEEc-----CCCCEEEE
Confidence 2233322221111 1111226677888899999999999763 444432 24456676 46677778
Q ss_pred ccCCCcEEEEc
Q 003360 578 SSWDGELIMVN 588 (826)
Q Consensus 578 ~s~~G~i~~~~ 588 (826)
.+.||.|.+|+
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 88888888875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=335.86 Aligned_cols=454 Identities=14% Similarity=0.151 Sum_probs=295.3
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
....+..|...|++++| +|+|.+||+|+.||.|++||+.++... .+.. ...+..+|..++|..
T Consensus 51 ~~~~~~~h~~~v~~~~~-spdg~~lasg~~d~~v~lWd~~~~~~~------------~~~~--~~~~~~~v~~v~fs~-- 113 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHI------------LKTT--IPVFSGPVKDISWDS-- 113 (611)
T ss_dssp CCEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEESSSTTCC------------EEEE--EECSSSCEEEEEECT--
T ss_pred cCeEecCCCCceEEEEE-CCCCcEEEEEeCCCCEEEeECCCCcce------------eeEe--ecccCCceEEEEECC--
Confidence 34455567788999999 689999999999999999998754110 0000 112345899999975
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++..++++|.+. ....+++.++.......+ . .....+..+.+-|.. +..++.++.++.+.+||...
T Consensus 114 --dg~~l~~~~~~~--~~~~~v~~wd~~~~~~~l--~-gh~~~v~~v~f~p~~-------~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 114 --ESKRIAAVGEGR--ERFGHVFLFDTGTSNGNL--T-GQARAMNSVDFKPSR-------PFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp --TSCEEEEEECCS--SCSEEEEETTTCCBCBCC--C-CCSSCEEEEEECSSS-------SCEEEEEETTSCEEEEETTT
T ss_pred --CCCEEEEEECCC--CceeEEEEeeCCCCccee--c-CCCCCceEEEECCCC-------CeEEEEEeCCCeEEEEECCC
Confidence 455565555432 122345555432211111 0 112233333332211 23477888999999999644
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-eeccc------ccCCcc
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL-LDFET------KLKDGS 236 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~------~h~g~V 236 (826)
......+..|...|++++|+|+++.+++++ |++|++|+...... ..+.. +|.+.|
T Consensus 180 -----------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 180 -----------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp -----------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred -----------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 123345788999999999999999999998 99999997544332 22212 799999
Q ss_pred ee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc---------------------------------ccccccccc
Q 003360 237 QS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK---------------------------------QQSEKDFSL 281 (826)
Q Consensus 237 ~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~---------------------------------~~~~~~~~~ 281 (826)
.+ |+|++++|+||+.|++|++||+............ ......+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 98 9999999999999999999999443321111000 000112346
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC------ccccceEEEeecCCCCeEE-------------------
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH------AIENSFLSFTGSKKGNSHI------------------- 336 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~------~~~~~~~~i~~s~~~~~~~------------------- 336 (826)
|...|++++|+|++++|++|+.||+|++||+.++.. .|...+..+.+++++....
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence 889999999999999999999999999999986632 2333444444432221100
Q ss_pred ---------------------------------EEE---EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 337 ---------------------------------IHS---VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 337 ---------------------------------~~~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++. +....+...+.+++|+|+|++||+|+.||+|++||+.++.+
T Consensus 403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence 000 11122445689999999999999999999999999988764
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
..... .+|...|++++|+| |+.+|++++.|++|++|+..+ ++++.... .......+.++.
T Consensus 483 ~~~~~--~~h~~~v~~v~fsp------dg~~las~s~d~~v~~w~~~~~~~~~~~~~-~~~H~~~V~~v~---------- 543 (611)
T 1nr0_A 483 SEVKT--IVHPAEITSVAFSN------NGAFLVATDQSRKVIPYSVANNFELAHTNS-WTFHTAKVACVS---------- 543 (611)
T ss_dssp EEEEE--EECSSCEEEEEECT------TSSEEEEEETTSCEEEEEGGGTTEESCCCC-CCCCSSCEEEEE----------
T ss_pred eeeec--cCCCCceEEEEECC------CCCEEEEEcCCCCEEEEEcCCCCceeeeee-eeecccceeEEE----------
Confidence 32122 36888999999999 699999999999999999987 54433200 000223333433
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEe
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFT 538 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~ 538 (826)
|++++.+++.++ |+.|+||++... ....+.....+....+....+ ++.+. |+....
T Consensus 544 ------------------fspdg~~lasgs~D~~v~lW~~~~~---~~~~~~~~~~h~~~~v~~v~f-s~d~~-l~s~~~ 600 (611)
T 1nr0_A 544 ------------------WSPDNVRLATGSLDNSVIVWNMNKP---SDHPIIIKGAHAMSSVNSVIW-LNETT-IVSAGQ 600 (611)
T ss_dssp ------------------ECTTSSEEEEEETTSCEEEEETTCT---TSCCEEETTSSTTSCEEEEEE-EETTE-EEEEET
T ss_pred ------------------ECCCCCEEEEEECCCcEEEEECCCc---ccccchhhccCcccCeeEEEE-cCCCE-EEEecC
Confidence 345656666665 568999999731 111101111110112222112 24455 888899
Q ss_pred eceEEEeccC
Q 003360 539 SGKFEIRSLP 548 (826)
Q Consensus 539 ~G~I~i~slP 548 (826)
||.|++|.+|
T Consensus 601 D~~i~lW~~~ 610 (611)
T 1nr0_A 601 DSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEEecc
Confidence 9999999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=321.35 Aligned_cols=481 Identities=14% Similarity=0.157 Sum_probs=327.8
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
...++.|+..|+|++| +|||++||+|+.||.|++||.... .+..+ ..|..+|..++|..
T Consensus 9 ~~~L~GH~~~V~~~a~-spdg~~las~~~d~~v~iWd~~~~-------------~~~~l----~gh~~~V~~l~fsp--- 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRNGQ-------------LLQTL----TGHSSSVWGVAFSP--- 67 (577)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEECTTSC-------------EEEEE----ECCSSCEEEEEECT---
T ss_pred eeEECCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEECCCC-------------EEEEE----eCCCCCEEEEEECC---
Confidence 3446678999999999 689999999999999999995321 11111 13556899998865
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++++++.+ ..+.+|..... .+.......+.+..+.+.| +...++.++.++.+.+|+....
T Consensus 68 -dg~~las~~~d----~~i~vWd~~~~----~~~~~~~~~~~v~~~~~s~--------d~~~l~~~~~d~~~~~~~~~~~ 130 (577)
T 2ymu_A 68 -DGQTIASASDD----KTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSP--------DGQTIASASDDKTVKLWNRNGQ 130 (577)
T ss_dssp -TSSEEEEEETT----SCEEEEETTSC----EEEEECCCSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTCC
T ss_pred -CCCEEEEEeCC----CEEEEEECCCC----EEEEEECCCCCEEEEEECC--------CCCEEEEEcCCCceeecccccc
Confidence 56777777663 35666664321 1111112233444444432 2356677777888888774331
Q ss_pred HHHHhhccCCC------C-----------------CCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 166 ERYLLQYQSRS------P-----------------PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 166 ~~~~~~~~~~~------~-----------------~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
........... . .............|...|.++.|+|+++.+++++ |+.+++|+..
T Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC
Confidence 10000000000 0 0001112234567888999999999999999988 9999999876
Q ss_pred CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
......+ .+|.+.|.+ |+|++++|++|+.||+|++||..+... .. +..|...|++++|+|+++.|+
T Consensus 211 ~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~---~~--------~~~~~~~v~~v~~~~d~~~l~ 278 (577)
T 2ymu_A 211 GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QT--------LTGHSSSVNGVAFRPDGQTIA 278 (577)
T ss_dssp SCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EE--------ECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE---EE--------EecCCCCEEEEEEcCCCCEEE
Confidence 5444444 779999988 999999999999999999999866552 11 246788999999999999999
Q ss_pred EEeCCCcEEEEEeCCCC----CccccceEEEeecCCCCeEE---------EEE------EEEeeccCCeEEEEEccCCCE
Q 003360 300 SGDQSGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHI---------IHS------VKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~---------~~~------~~~~~~~~~V~~l~~s~~g~~ 360 (826)
+++.|+.|++|+..... ..+...+..+.+++++.... ++. .....+...|++++|+|+|.+
T Consensus 279 ~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 279 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCE
Confidence 99999999999976441 23455677777777664422 221 223345678999999999999
Q ss_pred EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
|++|+.||.|++||. ++.++... ..|...|++++|+| |+.+|++++.|+.|++||. +++.+.++..|..
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~---~~~~~~v~~~~~s~------dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~ 427 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFSP------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 427 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEE---ECCSSCEEEEEECT------TSSCEEEEETTSEEEEECT-TCCEEEEEECCSS
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEe---cCCCCCeEEEEECC------CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC
Confidence 999999999999996 45555443 36888999999998 6999999999999999996 4788777655432
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCc
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSC 519 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c 519 (826)
.+.++. +++++.++++++ ++.+++|++.. +.+.....+...
T Consensus 428 ---~v~~~~----------------------------~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~- 469 (577)
T 2ymu_A 428 ---SVWGVA----------------------------FSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHSSS- 469 (577)
T ss_dssp ---CEEEEE----------------------------ECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCSSC-
T ss_pred ---CeEEEE----------------------------ECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCCCC-
Confidence 233332 234555666655 56899999752 222222222111
Q ss_pred eeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcCCee
Q 003360 520 CWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQE 592 (826)
Q Consensus 520 ~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e 592 (826)
. ..+..++.+..|+....+|.|++++.. .+.+... .+.++.|+ +++...++.+.||.|.+|+-+.+
T Consensus 470 v-~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 470 V-RGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp E-EEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEEC-----TTSSCEEEEETTSEEEEECTTSC
T ss_pred E-EEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEc-----CCCCEEEEEECcCEEEEEeCCCC
Confidence 1 111122677888899999999999854 4544432 34456776 46677788888888888875444
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=328.69 Aligned_cols=469 Identities=14% Similarity=0.134 Sum_probs=300.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...+.+++| +|||.+||++. ++.|++||+.++..... ...|..+|..++|.. +|.+
T Consensus 16 ~~~g~~~~~~~-spdg~~l~~~~-~~~v~l~~~~~~~~~~~----------------~~~h~~~v~~~~~sp----dg~~ 73 (611)
T 1nr0_A 16 TARGTAVVLGN-TPAGDKIQYCN-GTSVYTVPVGSLTDTEI----------------YTEHSHQTTVAKTSP----SGYY 73 (611)
T ss_dssp CCTTCCCCCEE-CTTSSEEEEEE-TTEEEEEETTCSSCCEE----------------ECCCSSCEEEEEECT----TSSE
T ss_pred cccCceeEEee-CCCCCEEEeCC-CCEEEEecCCCcccCeE----------------ecCCCCceEEEEECC----CCcE
Confidence 34667889998 68999999997 67999999986521111 123556799888875 6788
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEee-cCCCceeeEEEecCCCCCCCCCCceEEEeccC----ccEEEecchhH
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKS----GHFYAFDDCQI 165 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~----G~l~~~d~~~i 165 (826)
++.|+.+ ..+.+|.+...... ....+ ...+.+.++.+-|.. ..+++.+.. |.+.+||...
T Consensus 74 lasg~~d----~~v~lWd~~~~~~~--~~~~~~~~~~~v~~v~fs~dg--------~~l~~~~~~~~~~~~v~~wd~~~- 138 (611)
T 1nr0_A 74 CASGDVH----GNVRIWDTTQTTHI--LKTTIPVFSGPVKDISWDSES--------KRIAAVGEGRERFGHVFLFDTGT- 138 (611)
T ss_dssp EEEEETT----SEEEEEESSSTTCC--EEEEEECSSSCEEEEEECTTS--------CEEEEEECCSSCSEEEEETTTCC-
T ss_pred EEEEeCC----CCEEEeECCCCcce--eeEeecccCCceEEEEECCCC--------CEEEEEECCCCceeEEEEeeCCC-
Confidence 8888774 35666665432221 11122 234556665554322 344444432 5788998543
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~ 241 (826)
....+..|...|++++|+|+++. +++++ |+++++|+...........+|.+.|.+ |+|
T Consensus 139 ------------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 139 ------------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp ------------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred ------------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 11235789999999999999974 88888 999999976543333233789999999 999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc--
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI-- 319 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~-- 319 (826)
++++|++|+.||+|++||...... +..+... ......|...|++++|+|++++|++|+.|++|++||+.++....
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~--~~~~~~~-~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTK--TGVFEDD-SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCE--EEECBCT-TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCcEEEEECCCCcE--eeeeccc-cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 999999999999999999843332 1222110 01112688999999999999999999999999999998653211
Q ss_pred ------ccceEEEe--------ecCCCCeEEEEE-------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 320 ------ENSFLSFT--------GSKKGNSHIIHS-------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 320 ------~~~~~~i~--------~s~~~~~~~~~~-------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
......+. .+.++.. .++. .....|...|++++|+|+|++|++|+.||+|++||+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i-~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFI-NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCE-EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcE-EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 01111111 1122211 1111 223457788999999999999999999999999999887
Q ss_pred eeEEeeecccCCCCC-----------------------------------------------------------------
Q 003360 379 TVLYQKHIASDISSG----------------------------------------------------------------- 393 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~----------------------------------------------------------------- 393 (826)
.+.... ...|...
T Consensus 357 ~~~~~~--~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 357 ISNRVF--PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp CEEECS--SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred ceeeec--ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence 654221 1123333
Q ss_pred ----------------eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee-eccCCCCCcceEEEEecCCCC
Q 003360 394 ----------------IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN-LIHPKKPSRALFMQILNGQDG 456 (826)
Q Consensus 394 ----------------V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~-~~~~~~~~~~lsi~~l~~~~~ 456 (826)
+.+++|+| |+.+|++|+.|++|++||..++...... ..|. ..+.++.
T Consensus 435 ~~~~~~~~~~~~~~~~v~~va~sp------dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~---~~v~~v~------- 498 (611)
T 1nr0_A 435 AIYSHGKLTEVPISYNSSCVALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVA------- 498 (611)
T ss_dssp EEEETTEEEEEECSSCEEEEEECT------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECS---SCEEEEE-------
T ss_pred EEEeCCceeeeecCCCceEEEEeC------CCCEEEEeCCCCeEEEEEccCCceeeeeccCCC---CceEEEE-------
Confidence 44455555 5777788888888888887655432111 1221 2223332
Q ss_pred cccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeee--eecCCCCceeeEeeeeCCceEE
Q 003360 457 LARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYK--KKFHSSSCCWASTFYSGSDVGL 533 (826)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k--~~~~~~~c~~~~~~~~~~~~~l 533 (826)
|++++.++++++ ++.+++|++... .+.+.. ...+ ...++ ++.-++.+..|
T Consensus 499 ---------------------fspdg~~las~s~d~~v~~w~~~~~----~~~~~~~~~~~H-~~~V~-~v~fspdg~~l 551 (611)
T 1nr0_A 499 ---------------------FSNNGAFLVATDQSRKVIPYSVANN----FELAHTNSWTFH-TAKVA-CVSWSPDNVRL 551 (611)
T ss_dssp ---------------------ECTTSSEEEEEETTSCEEEEEGGGT----TEESCCCCCCCC-SSCEE-EEEECTTSSEE
T ss_pred ---------------------ECCCCCEEEEEcCCCCEEEEEcCCC----Cceeeeeeeeec-cccee-EEEECCCCCEE
Confidence 445656666655 568999998731 111111 0001 11111 11112678889
Q ss_pred EEEEeeceEEEeccCCccc-c-c------cccccceeecCCCCCCCcccceeccCCCcEEEEcC
Q 003360 534 MLLFTSGKFEIRSLPELSL-L-K------ETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 534 v~~~~~G~I~i~slP~L~~-l-~------~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
+....||.|++|.+..... + . ...+.++.|. +++. .++.+.||.|.+|+-
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs-----~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-----NETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-----ETTE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc-----CCCE-EEEecCCCCEEEEec
Confidence 9999999999999875431 1 1 2235567777 3444 888888999988875
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=283.10 Aligned_cols=243 Identities=11% Similarity=0.129 Sum_probs=192.3
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC-c
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-L 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~-~ 264 (826)
..|..+|++++|+++++.+++++ |+.|++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+... .
T Consensus 52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 34566789999999999999998 999999986654443333789999999 9999999999999999999999433 3
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. . ..+..|...|++++|+| ++..|++|+.||+|++||++..... . ....
T Consensus 132 ~--~--------~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----------------~----~~~~ 181 (304)
T 2ynn_A 132 L--E--------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----------------F----TLTT 181 (304)
T ss_dssp E--E--------EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----------------E----EEEC
T ss_pred h--h--------hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----------------c----eecc
Confidence 1 1 12346889999999999 6789999999999999999744321 0 1122
Q ss_pred eccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 344 KINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 344 ~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
.+...|..++|+| ++.+|++|+.||+|++||+++++++.... +|...|.++.|+| ++.+|++|+.||+|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p------~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHP------TLPIIISGSEDGTL 252 (304)
T ss_dssp CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECS------SSSEEEEEETTSCE
T ss_pred CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECC------CCCEEEEEcCCCeE
Confidence 3456789999986 77899999999999999999999886554 7889999999999 58999999999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
++||..+++++.++..+.. .+.++.+.. .....++++++++.+.+|++.
T Consensus 253 ~iWd~~~~~~~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 253 KIWNSSTYKVEKTLNVGLE---RSWCIATHP--------------------------TGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp EEEETTTCCEEEEECCSSS---SEEEEEECT--------------------------TCGGGCEEEEETTEEEEEECC
T ss_pred EEEECCCCceeeeccCCCc---cEEEEEECC--------------------------CCCceEEEEecCCceEEEEec
Confidence 9999999999988754432 333443321 111236888889999999886
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=289.19 Aligned_cols=286 Identities=13% Similarity=0.177 Sum_probs=215.8
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
.++..|...|.+++| +|+|.+||+|+.||.|++||+.++..... + ..+..+|..+.|..
T Consensus 49 ~~l~gH~~~v~~~~~-s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------~----~~~~~~v~~~~~s~---- 107 (340)
T 1got_B 49 RTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------I----PLRSSWVMTCAYAP---- 107 (340)
T ss_dssp EEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTCCEEEE------------E----ECSSSCEEEEEECT----
T ss_pred eeecCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEECCCCCcceE------------e----ecCCccEEEEEECC----
Confidence 345567889999999 58999999999999999999887511110 0 01223455555433
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.+ ++.++.+|.+.+||...-
T Consensus 108 ~~~~---------------------------------------------------------l~s~~~d~~v~iw~~~~~- 129 (340)
T 1got_B 108 SGNY---------------------------------------------------------VACGGLDNICSIYNLKTR- 129 (340)
T ss_dssp TSSE---------------------------------------------------------EEEEETTCEEEEEETTTC-
T ss_pred CCCE---------------------------------------------------------EEEEeCCCeEEEEECccC-
Confidence 2223 344445556666665430
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
. ........+..|...|+++.|++++. +++++ |+.|++|+...........+|.+.|.+ |+|++
T Consensus 130 ------~------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 130 ------E------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ------S------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ------C------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 0 01112344678999999999999887 55655 999999986654443333689999998 99999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
+++++|+.||+|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++....
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~--~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~------ 260 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMC--RQ--------TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE------ 260 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------
T ss_pred CEEEEEeCCCcEEEEECCCCee--EE--------EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE------
Confidence 9999999999999999954432 11 2346888999999999999999999999999999984321
Q ss_pred EEEeecCCCCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+....+ ...|++++|+|+|.+|++|+.||.|++||+.++..+... .+|..+|.+++|+
T Consensus 261 ----------------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~s 321 (340)
T 1got_B 261 ----------------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVT 321 (340)
T ss_dssp ----------------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEC
T ss_pred ----------------EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe---ecCCCcEEEEEEc
Confidence 111122 346999999999999999999999999999998877544 4789999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEE
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
+ ++.+|++|+.|++|++||
T Consensus 322 ~------dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 D------DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp T------TSSCEEEEETTSCEEEEC
T ss_pred C------CCCEEEEEcCCccEEecC
Confidence 9 699999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=299.68 Aligned_cols=284 Identities=12% Similarity=0.161 Sum_probs=220.9
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
+..|...|++++| +|++.+||+|+.||.|++||+.++...+. ...+..+|..+.|.. ++
T Consensus 104 l~gh~~~V~~~~~-~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------l~~h~~~V~~v~~~~----~~ 162 (410)
T 1vyh_C 104 LSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGDFERT----------------LKGHTDSVQDISFDH----SG 162 (410)
T ss_dssp EECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCCCCEE----------------ECCCSSCEEEEEECT----TS
T ss_pred ecccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------EeccCCcEEEEEEcC----CC
Confidence 3456779999999 57999999999999999999988622111 112344566666543 22
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
.+ ++.++.+|.+.+||....
T Consensus 163 ~~---------------------------------------------------------l~sgs~D~~i~iwd~~~~--- 182 (410)
T 1vyh_C 163 KL---------------------------------------------------------LASCSADMTIKLWDFQGF--- 182 (410)
T ss_dssp SE---------------------------------------------------------EEEEETTSCCCEEETTSS---
T ss_pred CE---------------------------------------------------------EEEEeCCCeEEEEeCCCC---
Confidence 33 344445566667776441
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCE
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
.....+..|...|++++|+|++..+++++ |++|++|+...........+|...|.+ +++++++
T Consensus 183 --------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 183 --------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp --------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred --------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE
Confidence 12234578999999999999999999998 999999987654433333689999988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--------------------CCEEEEEeCCC
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--------------------SRVLVSGDQSG 305 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--------------------~~~Lasgs~dg 305 (826)
|++|+.||+|++||+..... .. .+..|...|.+++|+|+ +.+|++|+.||
T Consensus 249 l~s~s~D~~v~vwd~~~~~~--~~--------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKEC--KA--------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEEcCCCeEEEEECCCCce--ee--------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99999999999999954432 11 23467889999999996 67899999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+|++||++++.. . ..+..|...|++++|+|+|.+|++|+.||+|++||+.+++++...
T Consensus 319 ~i~iwd~~~~~~-----------------~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~- 376 (410)
T 1vyh_C 319 TIKMWDVSTGMC-----------------L----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL- 376 (410)
T ss_dssp EEEEEETTTTEE-----------------E----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-
T ss_pred eEEEEECCCCce-----------------E----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-
Confidence 999999984322 1 334457888999999999999999999999999999999887555
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.+|...|++++|+| ++.+|++|+.|++|++|+.+
T Consensus 377 --~~h~~~v~~l~~~~------~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 --NAHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp --ECCSSCEEEEEECS------SSSCEEEEETTSEEEEEC--
T ss_pred --cCCCCcEEEEEEcC------CCCEEEEEeCCCcEEEEeCC
Confidence 37888999999999 58999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=288.42 Aligned_cols=291 Identities=11% Similarity=0.141 Sum_probs=220.1
Q ss_pred cccccccccccceEEEecC---CCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 5 VLQSVYHETKQVTSACWAC---PIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~---p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
+..+...|...|.+++|.. +++.+||+|+.||.|++||+.+.... +......+..+|..+.|.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~--------------~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD--------------LQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE--------------EEEEECCCSSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee--------------eeeeeccCCCCEEEEEEC
Confidence 3455566788999999963 25789999999999999998653100 000011223334444332
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ....++..+.+|.+.+||
T Consensus 90 ~-------------------------------------------------------------~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 90 H-------------------------------------------------------------TLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp S-------------------------------------------------------------SSSEEEEEETTSEEEEEE
T ss_pred C-------------------------------------------------------------CCCEEEEEeCCCcEEEEE
Confidence 2 112345556677888888
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-- 238 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-- 238 (826)
...- .....+..|...+.+++|+|+++.+++++ |+.+++|+............|...|.+
T Consensus 109 ~~~~-----------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 109 LENG-----------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TTTT-----------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred CCCC-----------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 7551 12334567778899999999999999999 999999976554333222567777877
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|+|++++|++|+.||+|++||+..... +.. +..|..+|++++|+|++++|++|+.||+|++||++....
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~--~~~--------~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~- 240 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKL--LHT--------LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL- 240 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcE--EEE--------EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-
Confidence 999999999999999999999955442 222 246788999999999999999999999999999984322
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+..|...|++++|+|++.+|++|+.||+|+|||+.+++++.++ .+|...|.+++
T Consensus 241 ----------------~----~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~h~~~v~~v~ 297 (321)
T 3ow8_A 241 ----------------A----GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---FDHQDQVWGVK 297 (321)
T ss_dssp ----------------E----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEE
T ss_pred ----------------e----EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---cCCCCcEEEEE
Confidence 1 334457788999999999999999999999999999999988655 37889999999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|++ ++.+|++++.|++|++||..
T Consensus 298 ~s~------~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 298 YNG------NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT------TSSEEEEEETTCCEEEEECC
T ss_pred ECC------CCCEEEEEeCCCeEEEEeCC
Confidence 998 68999999999999999963
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=291.59 Aligned_cols=294 Identities=17% Similarity=0.177 Sum_probs=213.5
Q ss_pred ccccccceEEEecCCCCCEEEEEEe------cCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYS------NGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~------DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
..|++.|.+++| +|||++||+|+. ||+|++|+..++..... +......+...|..++|..
T Consensus 39 ~~H~~~V~~v~f-SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~------------~~~~~~~~~~~V~~~~~s~- 104 (357)
T 4g56_B 39 ACMEVQIGAVRY-RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES------------LCTAGVQTEAGVTDVAWVS- 104 (357)
T ss_dssp -CCCSEEEEEEE-CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG------------GCSEEEECSSCEEEEEEET-
T ss_pred ccccCCEEEEEE-CCCCCEEEEEcCCCCccccCeEEEEECCCCCccee------------EecccCCCCCCEEEEEEcC-
Confidence 346889999999 789999999998 78899998877521111 1111112233455555543
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++. +++.+.+|.|.+||..
T Consensus 105 ---d~~----------------------------------------------------------~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 105 ---EKG----------------------------------------------------------ILVASDSGAVELWEIL 123 (357)
T ss_dssp ---TTE----------------------------------------------------------EEEEETTSCEEEC---
T ss_pred ---CCC----------------------------------------------------------EEEEECCCEEEEeecc
Confidence 122 3444556677788765
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.-+. ..........|...|++++|+|+++.+++++ |+.|++|+...........+|.+.|.+ |+
T Consensus 124 ~~~~-------------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 124 EKES-------------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ccce-------------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 5110 0112233467999999999999999999998 999999987655444444779999998 88
Q ss_pred CCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCc
Q 003360 241 KVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 241 ~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
+++. ++++++.||+|++||+..... +..+ .+..|...|++++|+|++ .+|++|+.|+.|++||++.....
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKP--ATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSC--BCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred cCCCceeeeeccCCceEEEECCCCce--eeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 8875 899999999999999944331 1111 123456789999999974 68999999999999999854321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
..+..+...|++++|+|++ .+||+|+.||+|+|||+++++++... +|...|+++
T Consensus 263 ---------------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~~v 317 (357)
T 4g56_B 263 ---------------------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVTGV 317 (357)
T ss_dssp ---------------------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEEEE
T ss_pred ---------------------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEEEE
Confidence 2344567889999999987 57999999999999999999887332 689999999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+|+|. |+.+|++|+.|++|++|++.+.
T Consensus 318 afsP~-----d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPL-----DHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSS-----STTEEEEEETTSCEEEEECC--
T ss_pred EEeCC-----CCCEEEEEcCCCeEEEEECCCC
Confidence 99985 6889999999999999998753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-30 Score=325.93 Aligned_cols=465 Identities=12% Similarity=0.114 Sum_probs=312.7
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|++++| +|+|++||+|+.||.|++||+.++... ..+ ..+..+|..+.|+. ++.
T Consensus 612 ~~h~~~v~~~~~-s~~~~~l~s~~~d~~i~vw~~~~~~~~------------~~~----~~h~~~v~~~~~s~----~~~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETGEKL------------LDI----KAHEDEVLCCAFSS----DDS 670 (1249)
T ss_dssp CCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEE------------EEE----CCCSSCEEEEEECT----TSS
T ss_pred ecccccEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCEE------------EEe----ccCCCCEEEEEEec----CCC
Confidence 346788999999 689999999999999999999886211 111 13456899999975 566
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
++++|+.+ ..+.+|.+........ +. ...+.+..+.+.+. .+...++.++.+|.+.+||...
T Consensus 671 ~l~s~~~d----~~v~vwd~~~~~~~~~--~~-~~~~~v~~~~~~~~------~~~~~l~sg~~d~~v~vwd~~~----- 732 (1249)
T 3sfz_A 671 YIATCSAD----KKVKIWDSATGKLVHT--YD-EHSEQVNCCHFTNK------SNHLLLATGSNDFFLKLWDLNQ----- 732 (1249)
T ss_dssp EEEEEETT----SEEEEEETTTCCEEEE--EE-CCSSCEEEEEECSS------SSCCEEEEEETTSCEEEEETTS-----
T ss_pred EEEEEeCC----CeEEEEECCCCceEEE--Ec-CCCCcEEEEEEecC------CCceEEEEEeCCCeEEEEECCC-----
Confidence 77777653 3566666654332221 11 23344444444332 1234677788899999999865
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-----------------------
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL----------------------- 225 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~----------------------- 225 (826)
......+..|...|++++|+|+++.+++++ |+.|++|+......
T Consensus 733 ------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 733 ------------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp ------------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred ------------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 113345678999999999999999999998 99999996432110
Q ss_pred --------------------------------eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 226 --------------------------------LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 226 --------------------------------~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..+..+|.+.|.+ |+|+++++++|+.||+|++||+..... +.
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~--~~-- 876 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK--VA-- 876 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE--EE--
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--ee--
Confidence 0011256777777 999999999999999999999955442 12
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCC----------CCeEEEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKK----------GNSHIIH 338 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~----------~~~~~~~ 338 (826)
.+..|...|++++|+|++..|++++.||.|++|++......... ......+..+ .......
T Consensus 877 ------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 877 ------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred ------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 23468899999999999999999999999999998643111000 0001111111 1010000
Q ss_pred E---EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 339 S---VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 339 ~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. .........|++++|+|++.++++|+.||.|++||+.++..+... .+|...|++++|++ ++.+|+++
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~---~~h~~~v~~l~~s~------dg~~l~s~ 1021 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---VGHKKAVRHIQFTA------DGKTLISS 1021 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC---CCCSSCCCCEEECS------SSSCEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec---ccCCCceEEEEECC------CCCEEEEE
Confidence 0 111223567999999999999999999999999999999877443 47889999999999 69999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
+.||.|++||..+++.+... .....+.++.+. +++.++..+.++.+++
T Consensus 1022 ~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~----------------------------~~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1022 SEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLL----------------------------QDSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CSSSBEEEEETTTTEEECCB----CCSSCEEEEEEC----------------------------SSSEEEEEESSSEEEE
T ss_pred cCCCEEEEEECCCCceEEEe----cCCCcEEEEEEc----------------------------CCCcEEEEECCCcEEE
Confidence 99999999999998776321 222333333332 2345777777889999
Q ss_pred EeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccccc-----ccceeecCCCCCC
Q 003360 496 YSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETS-----IRGFVYLTPKPNS 570 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~s-----l~~~~~~~~~~~~ 570 (826)
|++.. .+.+.....+ ...... +..++.+..+++...+|.|++|++...+.+.... +.++.|+ +
T Consensus 1070 wd~~~-----~~~~~~~~~~-~~~v~~-~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s-----~ 1137 (1249)
T 3sfz_A 1070 WNVIT-----GRIERDFTCH-QGTVLS-CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-----L 1137 (1249)
T ss_dssp EETTT-----TCCCEEEECC-SSCCCC-EEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEEC-----S
T ss_pred EECCC-----CceeEEEccc-CCcEEE-EEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEEC-----C
Confidence 99973 2233332222 111111 1112566778888899999999998877766532 2234444 3
Q ss_pred CcccceeccCCCcEEEEc
Q 003360 571 LSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 571 ~~~~~~~~s~~G~i~~~~ 588 (826)
++...++.+.||.+.+|+
T Consensus 1138 dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp SSSEEEEEETTSCCCEEE
T ss_pred CCCEEEEEeCCCEEEEEE
Confidence 444555555555555554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-31 Score=287.04 Aligned_cols=232 Identities=16% Similarity=0.173 Sum_probs=178.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.|.+||..+- + ........+..|...|++++|+|+++++++++ |++|++|+......
T Consensus 95 ~l~~~s~dg~v~lWd~~~~-------~------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 95 GILVASDSGAVELWELDEN-------E------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEEETTSEEEEEEECTT-------S------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred eEEEEECCCEEEEEeccCC-------C------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3566677788888887651 0 01122334568999999999999999999998 99999998765544
Q ss_pred eecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEE
Q 003360 226 LDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSG 301 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasg 301 (826)
.....+|.+.|.+ |++++ .+|++|+.||+|++||+..... +..+. ...+...|++++|+|+ +.+|++|
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~------~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIG------CSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----------CCCEEEEEECSSCTTEEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeee------cceeeccceeeeecCCCCcceEEe
Confidence 4444789999998 89887 4899999999999999944432 12222 1245568999999995 5789999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCee
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+.||+|+|||++++... ..+..|...|++++|+|++ .+||+|+.||+|+|||+.++++
T Consensus 234 ~~dg~v~~wd~~~~~~~---------------------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCV---------------------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp ETTSEEEEEESCC--CC---------------------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred ccCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 99999999999854331 3345678889999999998 5799999999999999999887
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+. ..+|...|++++|+|. +..+|++|+.|++|++|++.+.
T Consensus 293 ~~----~~~H~~~V~~v~~sp~-----~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 293 FR----SQAHRDFVRDATWSPL-----NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EE----ECCCSSCEEEEEECSS-----STTEEEEEETTSCEEEEECCC-
T ss_pred EE----EcCCCCCEEEEEEeCC-----CCeEEEEEcCCCeEEEEECCCC
Confidence 62 2479999999999983 2346779999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=286.37 Aligned_cols=321 Identities=11% Similarity=0.122 Sum_probs=220.8
Q ss_pred ccccccccc-cceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 6 LQSVYHETK-QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 6 ~~~~~~~~~-~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
++++..|.. +|.+++| +|+|++||+|+.||.|++||+.++... .+.. ....+..+|..++|..
T Consensus 8 ~~~~~~h~~~~v~~l~~-sp~g~~las~~~D~~i~iw~~~~~~~~------------~~~~-~~~~h~~~v~~~~~sp-- 71 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAW-NPAGTLLASCGGDRRIRIWGTEGDSWI------------CKSV-LSEGHQRTVRKVAWSP-- 71 (345)
T ss_dssp EEEECCSTTSCEEEEEE-CTTSSCEEEEETTSCEEEEEEETTEEE------------EEEE-ECSSCSSCEEEEEECT--
T ss_pred eeeecCCCCCcEEEEEE-CCCCCEEEEEcCCCeEEEEEcCCCcce------------eeee-eccccCCcEEEEEECC--
Confidence 444445555 8999999 589999999999999999998764100 0000 0123445677776654
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++.++++ ++.+|.+.+||...
T Consensus 72 --~g~~l~s---------------------------------------------------------~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 72 --CGNYLAS---------------------------------------------------------ASFDATTCIWKKNQ 92 (345)
T ss_dssp --TSSEEEE---------------------------------------------------------EETTSCEEEEEECC
T ss_pred --CCCEEEE---------------------------------------------------------EECCCcEEEEEccC
Confidence 2333333 34445556665433
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS-- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~-- 238 (826)
- .......+..|...|++++|+|+++.+++++ |+.|++|+..... ......+|...|.+
T Consensus 93 ~---------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 93 D---------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp C----------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred C---------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 0 1112345678999999999999999999998 9999999754322 12223678999988
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|+|++++|++|+.||+|++||........... +..|...|++|+|+|++++|++|+.||+|+||+.......
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~--------~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCAT--------LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE--------ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999999999999999995444222222 3468899999999999999999999999999997533211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe------eEEeeecccCCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT------VLYQKHIASDISS 392 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~------~l~~~~~~~~~~~ 392 (826)
. .+......+...... .....|...|.+++|++++..|++++.|+.|++||..... .........+|..
T Consensus 230 ~--~~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 230 Q--GVACSGSDPSWKCIC---TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp T--CCCCC---CEEEEEE---EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred c--cceeeccCCccceeE---EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 0 000000000000100 1112367789999999999999999999999999987542 1122333457899
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.|.+++|+|. +..+|++|+.||+|++|+..+++....
T Consensus 305 ~V~~v~~~p~-----~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 305 DVNCVAWNPK-----EPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECSS-----STTEEEEEETTSCEEEEEECC------
T ss_pred cEeEeEEeCC-----CceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9999999993 235999999999999999998776543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-30 Score=283.89 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=214.8
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
..+..|...|.|++| +|+|.+||+|+.||.|++||..++..... +. .+..+|..++|..
T Consensus 58 ~~l~gH~~~V~~~~~-s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~------------~~----~~~~~v~~~~~sp---- 116 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------VT----MPCTWVMACAYAP---- 116 (354)
T ss_dssp EEEECCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEE------------EE----CSSSCCCEEEECT----
T ss_pred EEecCCCCeEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCcceE------------Ee----cCCCCEEEEEECC----
Confidence 445567889999999 57999999999999999999877521111 00 1122455555543
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.++++||. +|.+.+|+...-
T Consensus 117 ~g~~lasg~~---------------------------------------------------------d~~i~v~~~~~~- 138 (354)
T 2pbi_B 117 SGCAIACGGL---------------------------------------------------------DNKCSVYPLTFD- 138 (354)
T ss_dssp TSSEEEEEST---------------------------------------------------------TSEEEEEECCCC-
T ss_pred CCCEEEEeeC---------------------------------------------------------CCCEEEEEEecc-
Confidence 3444455444 333444433210
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC--
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-- 241 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-- 241 (826)
... ........+..|...|++++|++++..+++++ |++|++|+...........+|...|.+ +++
T Consensus 139 ------~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 139 ------KNE----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp ------TTC----CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred ------ccc----cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 000 00112234568999999999999999999988 999999987654444333789999988 655
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
++++|++|+.||+|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++.....
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~--~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~--- 275 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQC--VQ--------AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--- 275 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE--EE--------EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE---
Confidence 578999999999999999944432 12 23468889999999999999999999999999999843210
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
. . .....+...+++++|+|+|.+|++|+.||+|+|||+.++..+... .+|...|++++|+|
T Consensus 276 --~-----------~---~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l---~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 276 --A-----------I---YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL---FGHENRVSTLRVSP 336 (354)
T ss_dssp --E-----------E---ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECT
T ss_pred --E-----------E---EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE---ECCCCcEEEEEECC
Confidence 0 0 000112346899999999999999999999999999998877444 47899999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
|+.+|++|+.|++|++|+
T Consensus 337 ------dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 ------DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------TSSCEEEEETTSEEEEEC
T ss_pred ------CCCEEEEEcCCCCEEecC
Confidence 699999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-29 Score=305.46 Aligned_cols=502 Identities=12% Similarity=0.095 Sum_probs=289.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...|+|++| +|+|.+||+|+.||.|++||...... ... + .+..+|..++|+. +.+
T Consensus 15 gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~------------~~~--~---~~~~~V~~l~fsp-----g~~ 71 (902)
T 2oaj_A 15 GMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEV------------VIK--L---EDRSAIKEMRFVK-----GIY 71 (902)
T ss_dssp ECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEE------------EEE--C---SSCCCEEEEEEET-----TTE
T ss_pred CCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEE------------EEE--c---CCCCCEEEEEEcC-----CCE
Confidence 45789999999 58999999999999999998766411 111 1 1355899999985 346
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
+++++.+ ..+.+|.+........+ ...+.+..+.+- ++...+++++.+|.+.+||...-...
T Consensus 72 L~S~s~D----~~v~lWd~~~~~~~~~~----~~~~~V~~v~~s--------p~g~~l~sgs~dg~V~lwd~~~~~~~-- 133 (902)
T 2oaj_A 72 LVVINAK----DTVYVLSLYSQKVLTTV----FVPGKITSIDTD--------ASLDWMLIGLQNGSMIVYDIDRDQLS-- 133 (902)
T ss_dssp EEEEETT----CEEEEEETTTCSEEEEE----ECSSCEEEEECC--------TTCSEEEEEETTSCEEEEETTTTEEE--
T ss_pred EEEEECc----CeEEEEECCCCcEEEEE----cCCCCEEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCccc--
Confidence 6666653 46777776544322222 233444444332 23467888999999999998662100
Q ss_pred hccCCCCCCCCccce-eeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCcee-ecc-----------------
Q 003360 171 QYQSRSPPSAPKEVM-LKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLL-DFE----------------- 229 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~-~~~----------------- 229 (826)
.+. . +. .... ..+..|...|++++|+|+ +..+++++ |+.+ +|+....... .+.
T Consensus 134 ~~~--i-~~--~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 134 SFK--L-DN--LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp EEE--E-CC--HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred cce--e-cc--ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence 000 0 00 0000 123578899999999996 46777777 9999 9976543322 221
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc-----cc---cCCCCeEEEEEeC----CC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD-----FS---LSGIPLTALYYDG----TS 295 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~-----~~---~h~~~V~~l~fsp----~~ 295 (826)
..|.+.|.+ |+|++++|+||+.||+|+|||+..........+....... .. .|..+|++++|++ ++
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 124567888 9999999999999999999999433321111111000000 00 1123455555532 11
Q ss_pred -C----------------------------------------------------------------------------EE
Q 003360 296 -R----------------------------------------------------------------------------VL 298 (826)
Q Consensus 296 -~----------------------------------------------------------------------------~L 298 (826)
. .+
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 2 34
Q ss_pred EEEeCCCcEEEEEeCCCCCc------------cccceEEE----------------------------------eecCCC
Q 003360 299 VSGDQSGMVRIFKLKYEPHA------------IENSFLSF----------------------------------TGSKKG 332 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~------------~~~~~~~i----------------------------------~~s~~~ 332 (826)
++++.||.|++|++..+... +...+..+ .+++++
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 44444555666665433100 00111111 112222
Q ss_pred C---------eEEEEEEEEe------------------eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE----
Q 003360 333 N---------SHIIHSVKVM------------------KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---- 381 (826)
Q Consensus 333 ~---------~~~~~~~~~~------------------~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---- 381 (826)
. ..+++.+... .|...|++++|+|+|++||+|+.||+|+|||+.+++..
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 1 1223321110 34567999999999999999999999999999766210
Q ss_pred --------------------------------------EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 382 --------------------------------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 382 --------------------------------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.......+|..+|++++|+| |+ +|++|+.|++|++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp------dG-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN------IG-FVGIAYAAGSLML 600 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB------TS-EEEEEETTSEEEE
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC------Cc-EEEEEeCCCcEEE
Confidence 00122346899999999999 68 9999999999999
Q ss_pred EECCCCceEEeeec--cC-CCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC---CCEEEEe-ecCcEEEE
Q 003360 424 LDSDNGNMLSTNLI--HP-KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK---QWFVLLC-SEKAACAY 496 (826)
Q Consensus 424 wd~~tg~~i~~~~~--~~-~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vv~~-se~~irv~ 496 (826)
||+.++..+..... .. .....+.++.+.-. ...++ ..+++++ .|+.|++|
T Consensus 601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~-----------------------~~~~Dg~~~~~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIM-----------------------EYGDDGYSSILMVCGTDMGEVITY 657 (902)
T ss_dssp EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE-----------------------ECTTSSSEEEEEEEEETTSEEEEE
T ss_pred EECCCCeEEEEeehhHhccccccceEEEEEEEE-----------------------ecCCCCCcceEEEEEecCCcEEEE
Confidence 99987776643221 11 23344555544300 01122 2344444 55689999
Q ss_pred eccccccccc-eeeeee-ecC-CCCceeeEeeee-------------------CCceEEEEEEeeceEEEeccCCccccc
Q 003360 497 SLSHAVQGVK-KVLYKK-KFH-SSSCCWASTFYS-------------------GSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 497 sl~~~~~g~~-k~~~k~-~~~-~~~c~~~~~~~~-------------------~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
++.....|.. ..+... .+. .........+.. ....+.++++.+..|+|+++|..+.+.
T Consensus 658 d~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~ 737 (902)
T 2oaj_A 658 KILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTH 737 (902)
T ss_dssp EEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEE
T ss_pred EEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcccccee
Confidence 9821001111 011111 010 011111222221 124677888889999999999988775
Q ss_pred cc-c----ccce---eecC-CCCCCCcccceeccCCCcEEEEcC
Q 003360 555 ET-S----IRGF---VYLT-PKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 555 ~~-s----l~~~---~~~~-~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
.. . ...+ .|.. .....++...+|.+.||+|.+|+=
T Consensus 738 k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~ 781 (902)
T 2oaj_A 738 KGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTI 781 (902)
T ss_dssp EECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred eEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEEC
Confidence 43 0 1122 2000 001245667788888888888874
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-31 Score=291.53 Aligned_cols=306 Identities=12% Similarity=0.185 Sum_probs=216.5
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
.++..|...|++++| +|+|.+||+|+.||.|++||+.++..... + ..+..+|..++|..
T Consensus 60 ~~l~gH~~~V~~~~~-sp~~~~l~s~s~D~~v~iWd~~~~~~~~~------------~----~~h~~~v~~~~~s~---- 118 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDW-TPEKNWIVSASQDGRLIVWNALTSQKTHA------------I----KLHCPWVMECAFAP---- 118 (380)
T ss_dssp EEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEEETTTTEEEEE------------E----ECCCTTCCCCEECT----
T ss_pred ecccccccEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCccceE------------E----ecCCCCEEEEEECC----
Confidence 345667889999999 57999999999999999999887521111 0 01222344444432
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.++++|| .++.+.+||.....
T Consensus 119 ~g~~las~~---------------------------------------------------------~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 119 NGQSVACGG---------------------------------------------------------LDSACSIFNLSSQA 141 (380)
T ss_dssp TSSEEEECC---------------------------------------------------------SSSCCEEEECCCCS
T ss_pred CCCEEEEee---------------------------------------------------------CCCcEEEEECCCCc
Confidence 334444444 34444455543200
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeec-----ccccCCccee-
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDF-----ETKLKDGSQS- 238 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~-----~~~h~g~V~~- 238 (826)
.... .......+..|...|.++.|+|++ ..+++++ |++|++|+......... ..+|...|.+
T Consensus 142 -----~~~~-----~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 142 -----DRDG-----NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp -----SCCC-----SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred -----cccC-----CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 0000 111223467899999999999975 4588888 99999997665433322 2568888888
Q ss_pred -eCC-CCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSK-VKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~-~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+++ ++++|++|+.||+|++||+. .... ...+..|...|++++|+|++.+|++|+.||+|++||++++
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~----------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRA----------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCC----------CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcc----------eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 654 88999999999999999994 3221 1123478899999999999999999999999999999854
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee-cccCCCCCe
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH-IASDISSGI 394 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~-~~~~~~~~V 394 (826)
... ..+...... ...+...|++++|+|+|.+|++|+.||.|++||+..++.+.... ...+|...|
T Consensus 282 ~~~-----~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 282 HQL-----QVYNREPDR---------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp EEE-----EEECCCCSS---------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred cEE-----EEecccccc---------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 321 000000000 00112348999999999999999999999999999988875542 235789999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++++|+| |+.+|++|+.|++|++|+...++
T Consensus 348 ~~l~~s~------dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 SCLGLSS------DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEECS------SSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECC------CCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999 69999999999999999998654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=275.52 Aligned_cols=295 Identities=13% Similarity=0.120 Sum_probs=219.6
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
..++..|...|++++|.+.++.+|++|+.||+|++||+...... ...++.. ...|..+|..+.|..
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~~~~----~~~h~~~v~~~~~s~--- 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVPVRS----FKGHSHIVQDCTLTA--- 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEEEEE----EECCSSCEEEEEECT---
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------ccccceE----EeCCcccEEEEEECC---
Confidence 44566789999999996445689999999999999987653100 0001000 011222333332221
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
+...++.++.+|.+.+||..+-
T Consensus 76 ----------------------------------------------------------dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 76 ----------------------------------------------------------DGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp ----------------------------------------------------------TSSEEEEEETTSEEEEEETTTT
T ss_pred ----------------------------------------------------------CCCEEEEEeCCCEEEEEECCCC
Confidence 1244566677788889987651
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~ 242 (826)
.....+..|...|++++|++++..+++++ |++|++|+........+ .+|.+.|.+ ++|.
T Consensus 98 -----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~-~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 98 -----------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL-LGHNDWVSQVRVVPN 159 (319)
T ss_dssp -----------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECCC
T ss_pred -----------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eccCCcEEEEEEccC
Confidence 12345678999999999999999999998 99999998766555555 788988888 6664
Q ss_pred ------CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 243 ------KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 243 ------~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+.+|++|+.||+|++||+..... . ..+..|...|++++|+|++.+|++|+.||+|+|||+....
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~--------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQI--E--------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEE--E--------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchh--h--------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 55899999999999999954442 1 1234688999999999999999999999999999998432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec-----ccCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI-----ASDIS 391 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~-----~~~~~ 391 (826)
. +.....+..|.+++|+|++.++++++.++ +++|++....++..... ...+.
T Consensus 230 ~----------------------~~~~~~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 230 A----------------------MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp E----------------------EEEEECCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred E----------------------EEEecCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcC
Confidence 2 33344567899999999999999888665 89999988776644321 12346
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..+.+++|+| |+++|++|+.|+.|++||+.++
T Consensus 287 ~~v~~~~~sp------dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSA------DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECT------TSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECC------CCCEEEEeecCceEEEEEEeec
Confidence 6799999999 6999999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=275.79 Aligned_cols=249 Identities=13% Similarity=0.179 Sum_probs=186.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.+.+||...- .....+..|...|++++|+|++..+++++ |+++++|+.....
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~-----------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENR-----------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp SEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEcCCCeEEEEECCCC-----------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 45667778889999997651 13345688999999999999999999988 9999999766543
Q ss_pred eeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.... ..+..++.+ ++| ++++|++|+.||+|++||+..... +..+... ......|...|++++|+|++++|++|
T Consensus 199 ~~~~-~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 199 CSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp EEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC-------CCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEE-EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--EEeeccc-ccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 3322 345667777 888 899999999999999999954432 1222211 11224688999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.||+|++||++....... ......+.. . ..+..|...|.+++|++++.+|++|+.||.|++||+.+++++
T Consensus 275 s~d~~v~~wd~~~~~~~~~-----~~~~~~~~~-~---~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSD-----SKTPNSGTC-E---VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp ETTSEEEEEEC--------------------CE-E---EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred eCCCEEEEEECCCCCCccc-----ccCCCCCcc-e---EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 9999999999985422100 000001111 1 445567888999999999999999999999999999999988
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
... .+|...|.+++|.+......++.+|++|+.||+|++|+..
T Consensus 346 ~~l---~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 346 LML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEE---ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEE---CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 555 3788999999998754444468899999999999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-27 Score=277.97 Aligned_cols=481 Identities=12% Similarity=0.094 Sum_probs=296.9
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCC-eEEEEEeeeCCCCce
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIP-ISSLKWVYADGKASR 89 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-I~~l~W~~~~~~~g~ 89 (826)
.+...|++++| +|+|++||++. ||.|++||+.++.... .++..+ ..+..+ |..+.|+.. .++.
T Consensus 16 ~~~~~v~~~~~-spdg~~l~~~~-~~~v~v~~~~~~~~~~--------~~~~~~----~~h~~~~v~~~~~sp~--~~~~ 79 (615)
T 1pgu_A 16 TQRNFTTHLSY-DPTTNAIAYPC-GKSAFVRCLDDGDSKV--------PPVVQF----TGHGSSVVTTVKFSPI--KGSQ 79 (615)
T ss_dssp CCTTCCCCCEE-ETTTTEEEEEE-TTEEEEEECCSSCCSS--------CSEEEE----CTTTTSCEEEEEECSS--TTCC
T ss_pred CccCceeEEEE-CCCCCEEEEec-CCeEEEEECCCCCCcc--------ccceEE----ecCCCceEEEEEECcC--CCCC
Confidence 45778999999 58999999998 9999999998751000 011111 234567 999998641 1456
Q ss_pred EEEEccCCcCccceeEEEEcccCCc----ceeEEEee-cCCCceeeEEEecCCCCCCCCCCceEEEeccC----ccEEEe
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTE----SRTTKLAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKS----GHFYAF 160 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~----~~~~~~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~----G~l~~~ 160 (826)
++++|+.+ ..+.+|.+..... .......+ .....+..+.+.+. ...+++.+.. |.+++|
T Consensus 80 ~l~s~~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 80 YLCSGDES----GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--------GRRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp EEEEEETT----SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--------SSEEEEEECCSSCSEEEEET
T ss_pred EEEEecCC----CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC--------CCEEEEeccCCCCccEEEEE
Confidence 77777663 3566666642200 11111122 23455665555432 3456666655 789999
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCC---c
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKD---G 235 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g---~ 235 (826)
|... ....+..|...|++++|+|+++ .+++++ |+.+++|+...........+|.+ .
T Consensus 148 d~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 148 DSGN-------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208 (615)
T ss_dssp TTCC-------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred ECCC-------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence 8433 2344678999999999999998 677877 99999998655443333366888 8
Q ss_pred cee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEe
Q 003360 236 SQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 236 V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~ 312 (826)
|.+ |+|+ +++|++|+.||.|++||+..... +..+.. ....|...|++++|+ ++.+|++++.||.|++||+
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~----~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF--LKYIED----DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCE--EEECCB----TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE--eEEecc----cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence 888 9999 99999999999999999944432 222210 001577899999999 9999999999999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEee-----ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+.+.. +.... ....+.++.|+ ++.++++|+.||.|++||+.+++.+....
T Consensus 282 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-- 336 (615)
T 1pgu_A 282 TTSKC----------------------VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-- 336 (615)
T ss_dssp TTTEE----------------------EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC--
T ss_pred CCCcE----------------------EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe--
Confidence 84322 11111 23568888886 88899999999999999998877764442
Q ss_pred cCCCCCeeEEEEeecc----------------------------cCCCCCcEEEEEECCCcEEEEECCC-----------
Q 003360 388 SDISSGIVSLQFETCS----------------------------LQGFEKNFLVIATKDSSVLVLDSDN----------- 428 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~----------------------------~~~~d~~~l~sgs~Dg~V~iwd~~t----------- 428 (826)
+|..+|++++| +.. .. .++..|++++.|+.|++||..+
T Consensus 337 -~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 337 -GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp -CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred -CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence 45555555555 310 00 0266777888888887777653
Q ss_pred -----------------------CceEEeeeccCCCC------CcceEEEEecCCCCc----ccCccc--cccccccC-C
Q 003360 429 -----------------------GNMLSTNLIHPKKP------SRALFMQILNGQDGL----ARGANL--SNVAGMNK-G 472 (826)
Q Consensus 429 -----------------------g~~i~~~~~~~~~~------~~~lsi~~l~~~~~~----~~~~~~--~~~~~~~~-~ 472 (826)
++.+..+. +.... ...+..... .++.+ ...... ........ .
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEET-TTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeec-CCCeEEEEECCCccccccccCCccCce
Confidence 33333221 00000 111111111 01111 000000 11111111 1
Q ss_pred CCCCCCCCCCCEEEEeec-CcEEEEeccccccccceeeeeeec-CCCCceeeEeeeeC----------CceEEEEEEeec
Q 003360 473 SPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVKKVLYKKKF-HSSSCCWASTFYSG----------SDVGLMLLFTSG 540 (826)
Q Consensus 473 ~~~~~~~~~~~~vv~~se-~~irv~sl~~~~~g~~k~~~k~~~-~~~~c~~~~~~~~~----------~~~~lv~~~~~G 540 (826)
..+ .+++++.++++++. +.|++|++.. .+.+..... + ...+.. +.-++ .+..|++...+|
T Consensus 492 ~~~-~~s~~g~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~h-~~~v~~-~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 492 SYI-SISPSETYIAAGDVMGKILLYDLQS-----REVKTSRWAFR-TSKINA-ISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp EEE-EECTTSSEEEEEETTSCEEEEETTT-----TEEEECCSCCC-SSCEEE-EEECCCC------CCSCCEEEEEETTS
T ss_pred EEE-EECCCCCEEEEcCCCCeEEEeeCCC-----CcceeEeecCC-CCceeE-EEEcCccccccccccCCCEEEEEcCCC
Confidence 111 35667777777654 6899999973 333333221 1 111111 11114 788899999999
Q ss_pred eEEEeccCCc-cccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcC
Q 003360 541 KFEIRSLPEL-SLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 541 ~I~i~slP~L-~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
.|+++++... +.+... .+.++.|. +++. .++.+.||.+.+|+-
T Consensus 564 ~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s-----~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWE-----TPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEE-----ETTE-EEEEETTSCEEEEEE
T ss_pred cEEEEECCCCceechhhhcCccceEEEEEc-----CCCC-eEEecCCceEEEEee
Confidence 9999999886 444432 24456666 3445 777777777777764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=274.02 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=214.1
Q ss_pred ccccccccccceEEEe-----cCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEE
Q 003360 6 LQSVYHETKQVTSACW-----ACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKW 80 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW-----~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W 80 (826)
.+.+..|...|++++| .+++|.+||+|+.||.|++||+........ ...+... ...|..+|..+.|
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~----l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKA----LTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEE----ECCCSSCEEEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccch----hccCCCceEEEEE
Confidence 3445667889999999 555999999999999999999876411000 0001000 0112233444433
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEe
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
.. +...++.++.+|.+.+|
T Consensus 85 ~~-------------------------------------------------------------~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 85 SQ-------------------------------------------------------------ENCFAISSSWDKTLRLW 103 (343)
T ss_dssp CS-------------------------------------------------------------STTEEEEEETTSEEEEE
T ss_pred CC-------------------------------------------------------------CCCEEEEEcCCCcEEEE
Confidence 22 12344556667888888
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCcce
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQ 237 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~ 237 (826)
|...- .....+..|...|++++|+|+++.+++++ |+.|++|+......... ...|...|.
T Consensus 104 d~~~~-----------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 104 DLRTG-----------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp ETTSS-----------------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred ECCCC-----------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 87551 12345678999999999999999999998 99999997654333222 236888888
Q ss_pred e--eCCCC----------CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 238 S--HSKVK----------NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 238 ~--~s~~~----------~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
+ |+|++ .++++|+.||+|++||..... ... +..|...|++++|+|++++|++|+.||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~--------~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI---RYT--------FKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE---EEE--------EECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce---eEE--------EcCccccceEEEECCCCCEEEEEcCCC
Confidence 8 88876 799999999999999964332 111 346888999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE--e
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY--Q 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~--~ 383 (826)
.|++||+..... . .....+...|.+++|+|++.++++| .|+.|++||+.++.... .
T Consensus 236 ~v~iwd~~~~~~----------------~-----~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 236 KLLIWDILNLTY----------------P-----QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEEEEESSCCSS----------------C-----SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred eEEEEECCCCcc----------------c-----ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 999999953221 1 1222345679999999999877765 57779999998765432 1
Q ss_pred eec--------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 384 KHI--------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 384 ~~~--------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... ..+|...|.+++|+| ++.+|++|+.||+|++|+..+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNA------LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECS------SSCCEEEEETTSEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECC------CCCeEEEecCCceEEEEEEEcc
Confidence 211 125778899999999 5999999999999999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=264.86 Aligned_cols=285 Identities=12% Similarity=0.112 Sum_probs=212.4
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
..++..|...|++++|+|+++.+++++ |+.|++|+............|...|.+ |++++++|++|+.||+|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 345789999999999999999999998 999999987654433333678888888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... +.. +..|...|++++|+|++.+|++|+.||+|++||++.+.. .. ..
T Consensus 86 ~~~~--~~~--------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------------~~---~~ 135 (304)
T 2ynn_A 86 TGEK--VVD--------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------------LE---QT 135 (304)
T ss_dssp TCCE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------EE---EE
T ss_pred CCcE--EEE--------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------hh---hh
Confidence 4432 122 346889999999999999999999999999999974321 11 23
Q ss_pred EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+..|...|++++|+| ++.+|++|+.||+|++||++++...+... .++...|..+.|.+. .++.+|++|+.|++
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~l~s~s~D~~ 209 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPL----PDKPYMITASDDLT 209 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCS----TTCCEEEEEETTSE
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEc----CCCCEEEEEcCCCe
Confidence 445778899999999 67899999999999999998877664443 456678999999873 14789999999999
Q ss_pred EEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecc
Q 003360 421 VLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLS 499 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~ 499 (826)
|++||.++++++.++.+|... +.++. ++++..+++.++ |+.|+||++.
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~---v~~~~----------------------------~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSN---VSFAV----------------------------FHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSC---EEEEE----------------------------ECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCccceeeCCCCCC---EEEEE----------------------------ECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999888766432 22222 234445666655 5689999997
Q ss_pred ccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceE
Q 003360 500 HAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKF 542 (826)
Q Consensus 500 ~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I 542 (826)
..+.+...... ....|...+.. +....+++.+.+|.+
T Consensus 259 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 259 -----TYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp -----TCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred -----CCceeeeccCC-CccEEEEEECCCCCceEEEEecCCceE
Confidence 34444444333 22333322222 222346666666644
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=281.99 Aligned_cols=460 Identities=13% Similarity=0.181 Sum_probs=283.1
Q ss_pred ccccccccccc-ceEEEecCC--CCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 5 VLQSVYHETKQ-VTSACWACP--IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 5 ~~~~~~~~~~~-i~slcW~~p--~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
....+..+... |++++| +| +|++||+|+.||.|++||+.++....... ...... ...+..+|..+.|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~-sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~~~~~~----~~~~~~~v~~~~~s 125 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE----VNVKSE----FQVLAGPISDISWD 125 (615)
T ss_dssp SEEEECTTTTSCEEEEEE-CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE----EEEEEE----EECCSSCEEEEEEC
T ss_pred cceEEecCCCceEEEEEE-CcCCCCCEEEEecCCCEEEEEeCCCCccccccc----ccccch----hhcccccEEEEEEe
Confidence 34455556778 999999 68 99999999999999999997541100000 001111 11245689999997
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ++..+++++.+. .....++.++... ...........+..+.+.+.. +..++.++.+|.+.+||
T Consensus 126 ~----~~~~l~~~~~~~--~~~~~v~~~d~~~---~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~d~~v~vwd 189 (615)
T 1pgu_A 126 F----EGRRLCVVGEGR--DNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSR-------PMRSMTVGDDGSVVFYQ 189 (615)
T ss_dssp T----TSSEEEEEECCS--SCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSS-------SCEEEEEETTTEEEEEE
T ss_pred C----CCCEEEEeccCC--CCccEEEEEECCC---cceeeecCCccEEEEEECCCC-------CcEEEEEeCCCcEEEEe
Confidence 5 456666666542 1234455555222 111111223344444443322 22578888999999999
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecccCC---CEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceee-ccc---cc
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPFLDS---SITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLD-FET---KL 232 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~-~~~---~h 232 (826)
... ......+..|.. .|++++|+|+ ++.+++++ |+.+++|+........ +.. .|
T Consensus 190 ~~~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 190 GPP-----------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp TTT-----------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred CCC-----------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 654 123345678888 9999999999 99999988 9999999865544333 324 89
Q ss_pred CCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc-----------------------------------ccc
Q 003360 233 KDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK-----------------------------------QQS 275 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~-----------------------------------~~~ 275 (826)
.+.|.+ |+ ++++|++++.||+|++||+........+... .+.
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 999988 88 9999999999999999999533321111111 001
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE-------------------------------
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL------------------------------- 324 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~------------------------------- 324 (826)
...+..|...|++++| |+ |++|+.||.|++|++..-...+...+.
T Consensus 332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 1123345566666666 55 555555555555554300011111222
Q ss_pred ---EEeecCCCCeEE--------EEE------EEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeec
Q 003360 325 ---SFTGSKKGNSHI--------IHS------VKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 325 ---~i~~s~~~~~~~--------~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+.+++++.... ++. +....+...+++++|+ +.+|++|+. ||.|++||+.++.... ..
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~ 483 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DL 483 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--EC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc--cc
Confidence 222333221110 000 2233457789999999 889999999 9999999998876652 33
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccc
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNV 466 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~ 466 (826)
...|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+... ....+.++.+.......
T Consensus 484 ~~~~~~~v~~~~~s~------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~--------- 546 (615)
T 1pgu_A 484 KTPLRAKPSYISISP------SETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGA--------- 546 (615)
T ss_dssp SSCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------------
T ss_pred cCCccCceEEEEECC------CCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccc---------
Confidence 457889999999999 6999999999999999999999988775331 22334444432100000
Q ss_pred ccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 467 AGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.....++.++++++ ++.|+||++... .+.+.....+ ........+ ++.+. |+....+|.|++|
T Consensus 547 ---------~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~h-~~~v~~l~~-s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 547 ---------NEEEIEEDLVATGSLDTNIFIYSVKRP----MKIIKALNAH-KDGVNNLLW-ETPST-LVSSGADACIKRW 610 (615)
T ss_dssp ------------CCSCCEEEEEETTSCEEEEESSCT----TCCEEETTSS-TTCEEEEEE-EETTE-EEEEETTSCEEEE
T ss_pred ---------cccccCCCEEEEEcCCCcEEEEECCCC----ceechhhhcC-ccceEEEEE-cCCCC-eEEecCCceEEEE
Confidence 00001445666655 569999999731 1233332222 111111111 24566 8999999999999
Q ss_pred ccC
Q 003360 546 SLP 548 (826)
Q Consensus 546 slP 548 (826)
.+.
T Consensus 611 ~~~ 613 (615)
T 1pgu_A 611 NVV 613 (615)
T ss_dssp EEC
T ss_pred eee
Confidence 864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=269.52 Aligned_cols=311 Identities=12% Similarity=0.087 Sum_probs=209.0
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
+++.+..|...|.+++|. |+ +||+|+.||.|++||+.++... .... +....|..+|..++|..
T Consensus 6 ~~~~~~~h~~~v~~~~~s-~~--~las~~~D~~i~lw~~~~~~~~----------~~~~--~~~~~h~~~v~~v~~sp-- 68 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFS-QG--ILATGSTDRKIKLVSVKYDDFT----------LIDV--LDETAHKKAIRSVAWRP-- 68 (330)
T ss_dssp EEEEEECCSSCEEEEEEE-TT--EEEEEESSSCEEEEECSSSCCE----------EEEE--ECTTCCCSCEEEEEECT--
T ss_pred cceeeccCCCceeeeccC-CC--EEEEEcCCCEEEEEEecCCCeE----------EEEE--EecCCccCCEEEEEECC--
Confidence 455666788899999994 45 9999999999999998764100 0000 11122455677777754
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++.++++| +.+|.+.+||...
T Consensus 69 --~~~~las~---------------------------------------------------------s~D~~v~iw~~~~ 89 (330)
T 2hes_X 69 --HTSLLAAG---------------------------------------------------------SFDSTVSIWAKEE 89 (330)
T ss_dssp --TSSEEEEE---------------------------------------------------------ETTSCEEEEEC--
T ss_pred --CCCEEEEE---------------------------------------------------------eCCCcEEEEEccc
Confidence 23333333 3445555665432
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-C---ceeecccccCCccee-
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-P---PLLDFETKLKDGSQS- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~---~~~~~~~~h~g~V~~- 238 (826)
-. . . .........+..|...|++++|+|+++++++++ |++|++|+... . .......+|.+.|.+
T Consensus 90 ~~------~-~---~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 90 SA------D-R---TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp ---------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred Cc------C-c---cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 00 0 0 001122344678999999999999999999999 99999997632 1 112223679999998
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+|++++|++|+.||+|++||.......++.. +..|...|++++|+|+ +..|++|+.|++|++||++..
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAV--------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEE--------ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE--------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999999999999999999984433222222 3478899999999998 679999999999999999743
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEE-e-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC-
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKV-M-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS- 392 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~-~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~- 392 (826)
.... ..... .... . .|...|++++|++++ +|++|+.||+|+|||..++...........|..
T Consensus 232 ~~~~------------~~~~~--~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 232 DEDD------------QQEWV--CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp CTTS------------CEEEE--EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred Cccc------------cceeE--EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 2210 00000 0111 1 267789999999766 799999999999999988743211222245666
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.|.+++|+|. .++.+|++|+.||+|++||+.+
T Consensus 297 ~v~~v~~~~~----~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLEL----NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC---------CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecC----CCceEEEEecCCCcEEEEEecc
Confidence 8999999982 0367899999999999999864
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=276.70 Aligned_cols=290 Identities=12% Similarity=0.096 Sum_probs=221.1
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+..|..+|++++|+|+++.+++|+ |++|++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+..
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45689999999999999999999998 999999986654443333789999998 999999999999999999999954
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... +. .+..|...|++++|+|++.+|++|+.|++|++||++++.. . ..+
T Consensus 182 ~~~--~~--------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------------~----~~~ 230 (410)
T 1vyh_C 182 FEC--IR--------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------V----KTF 230 (410)
T ss_dssp SCE--EE--------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------E----EEE
T ss_pred Cce--eE--------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------E----EEE
Confidence 431 12 2347888999999999999999999999999999985432 1 234
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC--------------CCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ--------------GFE 408 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~--------------~~d 408 (826)
..|...|.+++|++++.+|++|+.||+|++||++++.+.... ..|...|.++.|+|.... ..+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 456778999999999999999999999999999999887554 378889999999983110 012
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.+|++|+.|++|++||+.++.++.++.+|.. .+.++.+ ++++.+++++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~----------------------------~~~g~~l~s~ 356 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLF----------------------------HSGGKFILSC 356 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSS---CEEEEEE----------------------------CSSSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCC---cEEEEEE----------------------------cCCCCEEEEE
Confidence 67899999999999999999999988766543 2333332 2344455555
Q ss_pred e-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 489 S-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 489 s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
+ |+.|+||++. ..+.+.....+ ...++.. ...+.+..++....||.|++|.+
T Consensus 357 s~D~~i~vwd~~-----~~~~~~~~~~h-~~~v~~l-~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 357 ADDKTLRVWDYK-----NKRCMKTLNAH-EHFVTSL-DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ETTTEEEEECCT-----TSCCCEEEECC-SSCEEEE-EECSSSSCEEEEETTSEEEEEC-
T ss_pred eCCCeEEEEECC-----CCceEEEEcCC-CCcEEEE-EEcCCCCEEEEEeCCCcEEEEeC
Confidence 5 5689999997 23334443332 2222211 11256677888899999999863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=311.12 Aligned_cols=486 Identities=13% Similarity=0.111 Sum_probs=309.3
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccccc-----------c----------cccccc
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ-----------I----------TPICKL 64 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~-----------~----------~~~~~~ 64 (826)
...+..+...|++++| +|+|++||+|+.||.|++||+.++........... + ..+.-+
T Consensus 650 ~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 4455567889999999 68999999999999999999998732221110000 0 000000
Q ss_pred cCC-------CCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC---CCceeeEEEe
Q 003360 65 NLG-------YKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL---SEPCIDMEII 134 (826)
Q Consensus 65 ~~~-------~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~---~~~~~d~~~l 134 (826)
++. ...+..+|..+.|.. ++.++++|+.+ ..+.+|.+........+...-.. ..+..+....
T Consensus 729 d~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNSVNHCRFSP----DDELLASCSAD----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp ETTSSSEEEEECCCSSCEEEEEECS----STTEEEEEESS----SEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred ECCCcchhheecCCCCCEEEEEEec----CCCEEEEEECC----CeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 000 112345666666654 44556655553 34556655443322222110000 0000000000
Q ss_pred cCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CC
Q 003360 135 SSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DE 213 (826)
Q Consensus 135 ~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~ 213 (826)
. ......++.. .++.+..|.+.+||... ..........|...|++++|+|+++.+++++ |+
T Consensus 801 v-~~~~~s~dg~-~l~~~~~~~v~~~d~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 862 (1249)
T 3sfz_A 801 V-KCCSWSADGD-KIIVAAKNKVLLFDIHT----------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 862 (1249)
T ss_dssp B-CCCCBCTTSS-EEEEEETTEEEEEETTT----------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS
T ss_pred E-EEEEECCCCC-EEEEEcCCcEEEEEecC----------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 0 0011112233 34455579999999876 1222233458899999999999999999998 99
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc------eee------------ee----
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL------FLL------------IL---- 269 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~------~~~------------i~---- 269 (826)
.+++|+...........+|.+.|.+ |+|++++|++|+.||+|++||..... ... +.
T Consensus 863 ~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 863 CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred eEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 9999977654444334789999999 99999999999999999999962110 000 00
Q ss_pred -----ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 270 -----SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 270 -----~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
............+...|++++|+|++.++++|+.||.|++|++..+... .....
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~---------------------~~~~~ 1001 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF---------------------SSGVG 1001 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE---------------------EECCC
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee---------------------eeccc
Confidence 0000000001123468999999999999999999999999999854321 23345
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|.+.|++++|+|+|.+|++|+.||.|++||+.++.++. ...|...|.++.|.+ +..+++++.|++|++|
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~-------~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQ-------DSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC----CBCCSSCEEEEEECS-------SSEEEEEESSSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE----EecCCCcEEEEEEcC-------CCcEEEEECCCcEEEE
Confidence 67889999999999999999999999999999998772 237888999999998 5678999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEeecCcEEEEecccccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYSLSHAVQ 503 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~sl~~~~~ 503 (826)
|..+++.+..+..|... +.++.+ ++++ .+++.+.++.+++|++..
T Consensus 1071 d~~~~~~~~~~~~~~~~---v~~~~~----------------------------s~d~~~l~s~s~d~~v~iwd~~~--- 1116 (1249)
T 3sfz_A 1071 NVITGRIERDFTCHQGT---VLSCAI----------------------------SSDATKFSSTSADKTAKIWSFDL--- 1116 (1249)
T ss_dssp ETTTTCCCEEEECCSSC---CCCEEE----------------------------CSSSSSCEEECCSSCCCEECSSS---
T ss_pred ECCCCceeEEEcccCCc---EEEEEE----------------------------CCCCCEEEEEcCCCcEEEEECCC---
Confidence 99999988887555432 222222 2232 455666677999999873
Q ss_pred ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCc
Q 003360 504 GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGE 583 (826)
Q Consensus 504 g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~ 583 (826)
.+.+.....+ ..... .+..++.+..+++...+|.|++|.+.+.+.+....-...... ..........+++++||.
T Consensus 1117 --~~~~~~l~~h-~~~v~-~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~dg~ 1191 (1249)
T 3sfz_A 1117 --LSPLHELKGH-NGCVR-CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGGWVTDVCFSPDSK 1191 (1249)
T ss_dssp --SSCSBCCCCC-SSCEE-EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCSCCCEEEECTTSS
T ss_pred --cceeeeeccC-CCcEE-EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCceEEEEEECCCCC
Confidence 2233332222 11111 111226677889999999999999998877665210000000 001134456678888888
Q ss_pred EEEEcC
Q 003360 584 LIMVNG 589 (826)
Q Consensus 584 i~~~~g 589 (826)
.++..+
T Consensus 1192 ~l~s~~ 1197 (1249)
T 3sfz_A 1192 TLVSAG 1197 (1249)
T ss_dssp CEEEES
T ss_pred EEEECC
Confidence 777665
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=261.51 Aligned_cols=242 Identities=13% Similarity=0.174 Sum_probs=185.1
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
..|...|++++|+|+++.+++++ |+.+++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+.....
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 34666789999999999999998 999999987654444333678999988 999999999999999999999954331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+.. +..|..+|++++|+|++.+|++|+.||.|++||++.+... . .....+
T Consensus 142 --~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----------------~---~~~~~~ 191 (312)
T 4ery_A 142 --LKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-----------------K---TLIDDD 191 (312)
T ss_dssp --EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------E---EECCSS
T ss_pred --EEE--------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-----------------e---EEeccC
Confidence 122 2357789999999999999999999999999999854321 0 111233
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee--EEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV--SLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~--sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
..+|.+++|+|++.+|++|+.||.|++||+++++++.... +|...+. ...|.+. ++.+|++|+.||.|++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVT-----GGKWIVSGSEDNLVYI 263 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECS-----SSCEEEECCTTSCEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeC-----CCcEEEEECCCCEEEE
Confidence 5679999999999999999999999999999998875543 3333322 2334432 5889999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee---cCcEEEEecc
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS---EKAACAYSLS 499 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s---e~~irv~sl~ 499 (826)
||+.+++.+..+..|.. .+.++. +++++.+++.++ |+.|++|+..
T Consensus 264 wd~~~~~~~~~~~~h~~---~v~~~~----------------------------~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTD---VVISTA----------------------------CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSS---CEEEEE----------------------------ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCC---cEEEEe----------------------------ecCcCCceEEEEccCCccEEEecCC
Confidence 99999999888755542 333333 334556666664 6789999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=264.13 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=214.1
Q ss_pred cccccccccceEEEecCCC-CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 7 QSVYHETKQVTSACWACPI-GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~-g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
.++..|...|++++|. |+ +.+||||+.||+|++||+.+..... ..+...+ ..+..+|..+.|..
T Consensus 32 ~tL~GH~~~V~~v~~s-p~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l----~~h~~~V~~~~~s~--- 96 (340)
T 4aow_A 32 GTLKGHNGWVTQIATT-PQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRAL----RGHSHFVSDVVISS--- 96 (340)
T ss_dssp EEECCCSSCEEEEEEC-TTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEE----CCCSSCEEEEEECT---
T ss_pred EEECCccCCEEEEEEe-CCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEE----eCCCCCEEEEEECC---
Confidence 3566788999999995 55 7899999999999999998751110 0111111 12344566665543
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++ +.++.+|.+.+|+....
T Consensus 97 -dg~~l---------------------------------------------------------~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 97 -DGQFA---------------------------------------------------------LSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp -TSSEE---------------------------------------------------------EEEETTSEEEEEETTTT
T ss_pred -CCCEE---------------------------------------------------------EEEcccccceEEeeccc
Confidence 23333 34444455556655431
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~ 241 (826)
........+...+....+++++..+++++ |+.+++|+......... ..+|...+.+ +++
T Consensus 119 -----------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 119 -----------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp -----------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred -----------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 12223456667888899999999999988 99999997654333222 3568888877 655
Q ss_pred C--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 242 V--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+ ..++++|+.|++|++||+..... +.. +..|..+|++|+|+|++++|++|+.||.|++||++....
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~--------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-- 249 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKL--KTN--------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-- 249 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE--
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCce--eeE--------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce--
Confidence 4 46899999999999999955542 122 246888999999999999999999999999999984322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec------ccCCCCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI------ASDISSG 393 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~------~~~~~~~ 393 (826)
+....+...|++++|+|++. +++++.||.|++||++++.++..... ...|...
T Consensus 250 --------------------~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 250 --------------------LYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp --------------------EEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred --------------------eeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 44445567899999999986 55667799999999998887754431 2357889
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
|++++|+| |+.+|++|+.||+|+|||+.+|.
T Consensus 309 v~~l~~s~------dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSA------DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECC------CCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999 69999999999999999999885
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=256.76 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=218.4
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++|+|+++.+++++ |+.+++|+...........+|..+|.+ |+|++++|++|+.||+|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34566789999999999999999999988 999999976554444444789999988 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+..... +.. +..|...|.+++|+|++.+|++|+.||.|++||++.+.. .
T Consensus 94 ~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~---- 142 (312)
T 4ery_A 94 VSSGKC--LKT--------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------------L---- 142 (312)
T ss_dssp TTTCCE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------E----
T ss_pred CCCCcE--EEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------------E----
Confidence 944432 122 346788999999999999999999999999999984432 1
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+..|..+|++++|+|++.+|++|+.||.|++||+++++.+... ...+..++..++|+| ++.+|++++.|+
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~l~~~~~d~ 214 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSP------NGKYILAATLDN 214 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECT------TSSEEEEEETTT
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE--eccCCCceEEEEECC------CCCEEEEEcCCC
Confidence 233456778999999999999999999999999999999887443 345677899999999 599999999999
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEec
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSL 498 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl 498 (826)
.|++||..+++++..+..|......... .+ ..+++.++++++ ++.|++|++
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~---------------------------~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF---------------------------SVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCSSSCCCE-EE---------------------------ECSSSCEEEECCTTSCEEEEET
T ss_pred eEEEEECCCCcEEEEEEecCCceEEEEE-EE---------------------------EeCCCcEEEEECCCCEEEEEEC
Confidence 9999999999988887655443221111 11 112334566655 568999999
Q ss_pred cccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEE--eeceEEEecc
Q 003360 499 SHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF--TSGKFEIRSL 547 (826)
Q Consensus 499 ~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~--~~G~I~i~sl 547 (826)
. ..+.+.....+ ...++...+ .+.+..++... .+|.|++|..
T Consensus 267 ~-----~~~~~~~~~~h-~~~v~~~~~-~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 267 Q-----TKEIVQKLQGH-TDVVISTAC-HPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp T-----TCCEEEEECCC-SSCEEEEEE-CSSSSEEEEEECTTTCCEEEEEC
T ss_pred C-----Cchhhhhhhcc-CCcEEEEee-cCcCCceEEEEccCCccEEEecC
Confidence 7 33344443322 222221111 14555565554 5899998863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=262.65 Aligned_cols=284 Identities=18% Similarity=0.226 Sum_probs=216.0
Q ss_pred eecccCCCEEEEEEeeC----CCeEEEec-CCcEEEeccCCCceee--cccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 187 KMPFLDSSITAMKLITG----NSFILSSA-DEDYSLLAKSVPPLLD--FETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~~~~~~~~~--~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
.+..|...|++++|+++ +..+++|+ |++|++|+........ ...+|..+|.+ +++++.++++|+.||+|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 34689999999999875 56899998 9999999754332211 13689999999 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||+..... +..+ ..|...|.+++|+|++++|++|+.||.|++|+++.+.. .
T Consensus 107 Wd~~~~~~--~~~~--------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-----------------~-- 157 (321)
T 3ow8_A 107 WDLENGKQ--IKSI--------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----------------E-- 157 (321)
T ss_dssp EETTTTEE--EEEE--------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-----------------E--
T ss_pred EECCCCCE--EEEE--------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-----------------e--
Confidence 99954442 1222 34667889999999999999999999999999984432 1
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....+...|.+++|+|+|++||+|+.||.|++||+++++++... .+|..+|.+++|+| ++.+|++|+.
T Consensus 158 --~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~sp------d~~~l~s~s~ 226 (321)
T 3ow8_A 158 --YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSP------DSQLLVTASD 226 (321)
T ss_dssp --EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECT------TSCEEEEECT
T ss_pred --EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcC------CCCEEEEEcC
Confidence 233445667999999999999999999999999999999988554 47888999999999 6999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~ 496 (826)
|++|++||..+++++.++..|.. .+.++.+ .+++.+++.+ .|+.|+||
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~---~v~~~~~----------------------------sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHAS---WVLNVAF----------------------------CPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSS---CEEEEEE----------------------------CTTSSEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCcceeEEEcCCCC---ceEEEEE----------------------------CCCCCEEEEEeCCCcEEEE
Confidence 99999999999998887655532 2333333 3344555555 45689999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
++. ..+++.....+ ...++... -++.+..|+....+|.|++|.+|
T Consensus 276 d~~-----~~~~~~~~~~h-~~~v~~v~-~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 276 DVG-----TRTCVHTFFDH-QDQVWGVK-YNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ETT-----TTEEEEEECCC-SSCEEEEE-ECTTSSEEEEEETTCCEEEEECC
T ss_pred eCC-----CCEEEEEEcCC-CCcEEEEE-ECCCCCEEEEEeCCCeEEEEeCC
Confidence 997 34444443322 22222211 12667788999999999999987
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=260.90 Aligned_cols=288 Identities=10% Similarity=0.053 Sum_probs=216.1
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+..|...|++++|+|+++++++++ |+.|++|+............|.+.|.+ |+|++++|++|+.||.|++||+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 4456889999999999999999999999 999999976544433333568888888 9999999999999999999999
Q ss_pred CCCc--eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 261 SCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 261 s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
.... ... ...+..|...|+++.|++++. +++|+.||+|++||++++.. .
T Consensus 127 ~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-----------------~--- 177 (340)
T 1got_B 127 KTREGNVRV--------SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-----------------T--- 177 (340)
T ss_dssp TTCSBSCEE--------EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE-----------------E---
T ss_pred ccCCCccee--------EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE-----------------E---
Confidence 4432 111 112346889999999998875 88999999999999984322 1
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
..+..|.+.|++++|+|++.++++|+.||+|++||++++.++..+ .+|...|.+++|+| ++.+|++|+.|
T Consensus 178 -~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~d 247 (340)
T 1got_B 178 -TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFP------NGNAFATGSDD 247 (340)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECT------TSSEEEEEETT
T ss_pred -EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcC------CCCEEEEEcCC
Confidence 334457888999999999999999999999999999999888554 47889999999999 59999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec-CcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se-~~irv~s 497 (826)
++|++||+++++.+..+. +......+.++. +++++.+++++++ +.|+||+
T Consensus 248 ~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~----------------------------~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 248 ATCRLFDLRADQELMTYS-HDNIICGITSVS----------------------------FSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SCEEEEETTTTEEEEEEC-CTTCCSCEEEEE----------------------------ECTTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEECCCCcEEEEEc-cCCcccceEEEE----------------------------ECCCCCEEEEECCCCeEEEEE
Confidence 999999999988776652 222222233332 3345556666654 5899999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
+.. .+.+....-+.... .. +..++.+..|+....||.|++|.
T Consensus 299 ~~~-----~~~~~~~~~h~~~v-~~-~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALK-----ADRAGVLAGHDNRV-SC-LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTT-----CCEEEEEECCSSCE-EE-EEECTTSSCEEEEETTSCEEEEC
T ss_pred ccc-----CcEeeEeecCCCcE-EE-EEEcCCCCEEEEEcCCccEEecC
Confidence 863 22333222221111 11 11125677788888999999874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=276.72 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=177.7
Q ss_pred cccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeecccccC--Cccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 189 PFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFETKLK--DGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~--g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..|...|++++|+| ++..|++++ |++|++|+........+...+. ..+.+ |++++++|++|+.||+|++||+.+
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 46788899999998 678999998 9999999876544444423333 33444 899999999999999999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
..+ ..+..|...|++|+|+|++. +|++|+.||+|+|||++...... .. ..
T Consensus 241 ~~~-----------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------~~-----~~ 291 (435)
T 4e54_B 241 KEL-----------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------SF-----LY 291 (435)
T ss_dssp CBC-----------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------------CC-----SB
T ss_pred cee-----------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-------------eE-----EE
Confidence 542 12357889999999999875 78899999999999998654311 00 22
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-CC--CCCeeEEEEeecccCCCCCcEEEEEE--
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-DI--SSGIVSLQFETCSLQGFEKNFLVIAT-- 416 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-~~--~~~V~sl~f~~~~~~~~d~~~l~sgs-- 416 (826)
...|...|++++|+|+|.+|++|+.||+|+|||+.++.+........ .+ ...+....|.+ ++.+++++.
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 365 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP------RYNLIVVGRYP 365 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS------SSSCEEEECCC
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC------CCCEEEEEEcC
Confidence 33567889999999999999999999999999999988764432111 11 11223345555 244444443
Q ss_pred ----------CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEE
Q 003360 417 ----------KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVL 486 (826)
Q Consensus 417 ----------~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 486 (826)
.++.|++||..+|+++..+..+.. ..+.++. .|++++.+|+
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~--~~v~s~~---------------------------~fspdg~~la 416 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES--SGISSLN---------------------------EFNPMGDTLA 416 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC--CCCCCEE---------------------------EECTTSSCEE
T ss_pred CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC--CcEEEEE---------------------------EECCCCCEEE
Confidence 345799999999998877532211 1222221 2445667888
Q ss_pred EeecCcEEEEecc
Q 003360 487 LCSEKAACAYSLS 499 (826)
Q Consensus 487 ~~se~~irv~sl~ 499 (826)
.++++.|+||++.
T Consensus 417 sg~d~~i~iW~~~ 429 (435)
T 4e54_B 417 SAMGYHILIWSQQ 429 (435)
T ss_dssp EECSSEEEECCCC
T ss_pred EEcCCcEEEEECC
Confidence 8889999999987
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=260.75 Aligned_cols=320 Identities=11% Similarity=0.053 Sum_probs=209.9
Q ss_pred eeecccCC-CEEEEEEeeCCCeEEEec-CCcEEEeccCCCce---eecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 186 LKMPFLDS-SITAMKLITGNSFILSSA-DEDYSLLAKSVPPL---LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 186 ~~l~~h~~-~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~---~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
..++.|.. .|++++|+|+++.|++++ |++|++|+...... ..+..+|.+.|.+ |+|++++|++|+.||+|+||
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45678887 999999999999999998 99999997654321 1223679999999 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|........+.. +..|...|++++|+|++++|++|+.|++|++||++..... ...
T Consensus 89 ~~~~~~~~~~~~--------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---------------~~~-- 143 (345)
T 3fm0_A 89 KKNQDDFECVTT--------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY---------------ECV-- 143 (345)
T ss_dssp EECCC-EEEEEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE---------------EEE--
T ss_pred EccCCCeEEEEE--------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe---------------EEE--
Confidence 995554323233 3478899999999999999999999999999999743210 110
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.....|...|++++|+|++.+|++|+.||+|++||.+.+....... ..+|...|++++|+| ++.+|++|+.|
T Consensus 144 -~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~-~~~h~~~v~~l~~sp------~g~~l~s~s~D 215 (345)
T 3fm0_A 144 -SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT-LEGHESTVWSLAFDP------SGQRLASCSDD 215 (345)
T ss_dssp -EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECT------TSSEEEEEETT
T ss_pred -EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE-ecCCCCceEEEEECC------CCCEEEEEeCC
Confidence 2334567789999999999999999999999999998876432222 257899999999999 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~s 497 (826)
++|++|+...+.......... ......++..+.+. . ......+ .+.+. ..++..+.++.+++|+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------h------~~~v~~v-~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSG-SDPSWKCICTLSGF-------H------SRTIYDI-AWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC----CEEEEEEEECSS-------C------SSCEEEE-EECTTTCCEEEEETTSCEEEEE
T ss_pred CeEEEeccccCCCCccceeec-cCCccceeEEecCC-------C------CCcEEEE-EEecCCCEEEEEeCCCeEEEEE
Confidence 999999964322110000000 00000111111100 0 0000011 12233 3466677778999999
Q ss_pred cccccccccee--eeee--ecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCCcccccc
Q 003360 498 LSHAVQGVKKV--LYKK--KFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 498 l~~~~~g~~k~--~~k~--~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
+.......... +... ..+ ..-+....+ .+.+ ..|+....||.|++|.+...+.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAH-SQDVNCVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSS-SSCEEEEEE-CSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eCCCCCcceeeEEEEeeecccc-cCcEeEeEE-eCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 86321100000 0000 111 111111111 1344 4678888999999999887665543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=254.40 Aligned_cols=285 Identities=12% Similarity=0.154 Sum_probs=218.1
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCC------ceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVP------PLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~------~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
...+..|...|++++|+|++ ..+++++ |+++++|+.... ....+ .+|.+.|.+ |++++++|++|+.||+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 34578999999999999976 7888888 999999964321 12233 689999988 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++.. .
T Consensus 89 v~~wd~~~~~~--~~--------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------~ 140 (319)
T 3frx_A 89 LRLWDVATGET--YQ--------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------C 140 (319)
T ss_dssp EEEEETTTTEE--EE--------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------------------E
T ss_pred EEEEECCCCCe--eE--------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------e
Confidence 99999955442 11 23478899999999999999999999999999998621 1
Q ss_pred EEEEEEEEeeccCCeEEEEEccC------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 335 HIIHSVKVMKINGSIISLNMNRN------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
. .....|...|.+++|+|. +..+++|+.||+|++||+++.++.... .+|..+|.+++|+| +
T Consensus 141 ~----~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp------~ 207 (319)
T 3frx_A 141 L----ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASP------D 207 (319)
T ss_dssp E----EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECT------T
T ss_pred E----EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcC------C
Confidence 1 334557788999999985 458999999999999999998877544 37899999999999 6
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.+|++|+.|++|++||+.+++.+.++..+ ..+.++. +++++.+++++
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~----------------------------~sp~~~~la~~ 255 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQ----DEVFSLA----------------------------FSPNRYWLAAA 255 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECC----SCEEEEE----------------------------ECSSSSEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC----CcEEEEE----------------------------EcCCCCEEEEE
Confidence 999999999999999999999988776432 2233333 34566788888
Q ss_pred ecCcEEEEeccccccccceeeeeeecCCC------CceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 489 SEKAACAYSLSHAVQGVKKVLYKKKFHSS------SCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 489 se~~irv~sl~~~~~g~~k~~~k~~~~~~------~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
+++.+++|++.. ...+........ .....++.-++.+..|+....+|.|++|.+.
T Consensus 256 ~~~~i~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 TATGIKVFSLDP-----QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp ETTEEEEEEETT-----EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCCCcEEEEeCc-----CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 899999999873 222222110000 0001112223778899999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=281.35 Aligned_cols=430 Identities=12% Similarity=0.101 Sum_probs=290.1
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
.+...+..+...|++++| +|+|.+||+|+.||.|++||+.++.... .+ ..+..+|..+.|+.
T Consensus 4 ~~~~~~~~h~~~v~~i~~-sp~~~~la~~~~~g~v~iwd~~~~~~~~------------~~----~~~~~~v~~~~~s~- 65 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVEIWNYETQVEVR------------SI----QVTETPVRAGKFIA- 65 (814)
T ss_dssp CCEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEE------------EE----ECCSSCEEEEEEEG-
T ss_pred ccceeeecCCCceEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEE------------EE----ecCCCcEEEEEEeC-
Confidence 345566778889999999 5799999999999999999998862111 11 12456899999987
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++.++++|+.+ ..+.+|.+....... .+ ....+.+..+.+.+ +...+++++.+|.+.+||..
T Consensus 66 ---~~~~l~~~~~d----g~i~vw~~~~~~~~~--~~-~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 66 ---RKNWIIVGSDD----FRIRVFNYNTGEKVV--DF-EAHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp ---GGTEEEEEETT----SEEEEEETTTCCEEE--EE-ECCSSCEEEEEECS--------SSSEEEEEETTSEEEEEEGG
T ss_pred ---CCCEEEEEeCC----CeEEEEECCCCcEEE--EE-ecCCCCEEEEEEeC--------CCCEEEEEcCCCEEEEEECC
Confidence 56667777663 356666654333211 11 12344555555443 23567888899999999986
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS-- 238 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~-- 238 (826)
. .......+..|...|++++|+| ++..+++++ |+.|++|+.... ....+...+..++.+
T Consensus 128 ~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 128 N----------------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (814)
T ss_dssp G----------------TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred C----------------CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence 5 1123445678999999999999 888999988 999999975432 333333445577777
Q ss_pred eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|+| ++++|++|+.||+|++||...... +.. +..|...|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC--VAT--------LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTTEE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCcE--EEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 888 999999999999999999955442 122 23577899999999999999999999999999998432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC--EEEEEecCCeEEEEecCCCeeEEeee---------
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ--HLAVGSDQGYVYLLDTEGPTVLYQKH--------- 385 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~lasGs~dG~V~vwD~~~~~~l~~~~--------- 385 (826)
. . .....+...|.+++|+|++. ++++|+ ++.+.+|++..........
T Consensus 262 ~-----------------~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (814)
T 3mkq_A 262 V-----------------E----KTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSG 319 (814)
T ss_dssp E-----------------E----EEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred E-----------------E----EEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence 2 1 22334567899999999986 466665 5557888876432211110
Q ss_pred -------------------------------cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 -------------------------------IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 -------------------------------~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
....+...+.++.|+| ++.++++++ |+.+.+|+.........
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~~la~~~-~~~~~i~~~~~~~~~~~ 392 (814)
T 3mkq_A 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP------NGRFVTVVG-DGEYVIYTALAWRNKAF 392 (814)
T ss_dssp CTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT------TSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC------CCCEEEEec-CCEEEEEECccccccCC
Confidence 0012344678999998 689999888 99999999874433221
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC-EEEEeecCcEEEEeccccccccceeeeeee
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW-FVLLCSEKAACAYSLSHAVQGVKKVLYKKK 513 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~~se~~irv~sl~~~~~g~~k~~~k~~ 513 (826)
+.+.++. |++++. +++.+.++.+++|+.- .++...+..+.
T Consensus 393 --------~~i~~~~----------------------------~spdg~~la~~~~~g~v~l~~~~---~~~~~~v~~~~ 433 (814)
T 3mkq_A 393 --------GKCQDFV----------------------------WGPDSNSYALIDETGQIKYYKNF---KEVTSWSVPMH 433 (814)
T ss_dssp --------EECSEEE----------------------------ECTTSSCEEEECTTCCEEEEETT---EECTTCCCCCS
T ss_pred --------CceEEEE----------------------------EeCCCCeEEEEeCCCcEEEEECC---CCccceEEcCC
Confidence 1112222 233433 5555566789999643 12221222222
Q ss_pred cCCCCceeeEeeeeCCc---eEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 514 FHSSSCCWASTFYSGSD---VGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 514 ~~~~~c~~~~~~~~~~~---~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
+. +.+ ..|+....+|.|+++.+...+.+... ... ...+++++||+.++..
T Consensus 434 ~s------------~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-----~~~--------~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 434 SA------------IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI-----DVN--------AKDVIWSDNGELVMIV 486 (814)
T ss_dssp SC------------CCEEECSSSEEEEETTEEEEECTTTCCEEEEE-----SSC--------EEEEEECTTSSEEEEE
T ss_pred cC------------ccceecceEEEEecCCEEEEEECCcCcEEEEE-----ecC--------CCEEEEcCCCCEEEEE
Confidence 21 222 25667788999999999887776653 111 1266788888877777
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=264.05 Aligned_cols=330 Identities=12% Similarity=0.127 Sum_probs=231.2
Q ss_pred ccccceEEEecCCCCC-EEEEEEecCcEEEEeC----CCccccccccccccccccccccCC------CCCCcCCeEEEEE
Q 003360 12 ETKQVTSACWACPIGS-KVAVGYSNGEILIWGV----PSILNLKTEECGTQITPICKLNLG------YKLDKIPISSLKW 80 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~-~latg~~DGsI~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~pI~~l~W 80 (826)
+...|++++| +|+|. +||+|+.||.|++||+ .++...... .+...+... ...+..+|..+.|
T Consensus 44 ~~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 44 KLDNIVSSTW-NPLDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp ECSCCSEEEE-CSSCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------CBCEEEEEE
T ss_pred ccCceEEEEE-CCCCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCCCceEEEEE
Confidence 4579999999 58999 9999999999999999 665210000 001111111 1124568999999
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEe
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
.. ++.++++|+.+ ..+.++.. .. +.+.........+..+.+.+ +...+++++.+|.+.+|
T Consensus 117 s~----~~~~l~~~~~d----g~i~i~~~---~~-~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 117 SH----DGNSIVTGVEN----GELRLWNK---TG-ALLNVLNFHRAPIVSVKWNK--------DGTHIISMDVENVTILW 176 (425)
T ss_dssp CT----TSSEEEEEETT----SCEEEEET---TS-CEEEEECCCCSCEEEEEECT--------TSSEEEEEETTCCEEEE
T ss_pred cC----CCCEEEEEeCC----CeEEEEeC---CC-CeeeeccCCCccEEEEEECC--------CCCEEEEEecCCeEEEE
Confidence 75 46666666653 24555541 11 11111112344555555543 23567888899999999
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCC---------------EEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSS---------------ITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~---------------Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
|...-. ....+..+... |.++.|++++. +++++ ++.+.+|+.....
T Consensus 177 d~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 177 NVISGT-----------------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp ETTTTE-----------------EEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSS
T ss_pred ECCCCc-----------------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCc
Confidence 986521 11122333333 89999999866 55555 9999999766544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
.......|.+.|.+ |+|++++|++|+.||.|++||+..... ...+..|...|++++|+|++ .|++++
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~i~~~~~~~~~-~l~~~~ 307 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----------QNCFYGHSQSIVSASWVGDD-KVISCS 307 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC----------SEEECCCSSCEEEEEEETTT-EEEEEE
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc----------ceEecCCCccEEEEEECCCC-EEEEEe
Confidence 33333678899988 999999999999999999999944331 11123577899999999999 999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe---
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--- 379 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--- 379 (826)
.||.|++||++.... . .....+...|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 308 ~d~~i~i~d~~~~~~-----------------~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~ 366 (425)
T 1r5m_A 308 MDGSVRLWSLKQNTL-----------------L----ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS 366 (425)
T ss_dssp TTSEEEEEETTTTEE-----------------E----EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred CCCcEEEEECCCCcE-----------------e----EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence 999999999974322 1 2333467789999999999999999999999999998877
Q ss_pred -----------------eEEeeecccCCCC--CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 380 -----------------VLYQKHIASDISS--GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 380 -----------------~l~~~~~~~~~~~--~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++... ..|.. .|+++.|++ ++.+|++++.||.|++|++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 367 RSLYGNRDGILNPLPIPLYASY---QSSQDNDYIFDLSWNC------AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------CEECCEEEEE---CCTTCCCCEEEEEECT------TSSEEEEEESSSCCEEEECC
T ss_pred eeeecccccccCcccchhhhhh---cCcccCCceEEEEccC------CCceEEEEecCceEEEEeec
Confidence 55333 35654 999999999 58999999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=254.77 Aligned_cols=324 Identities=13% Similarity=0.137 Sum_probs=245.2
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...|.+++| +|||..++++..++.+..|+..... .++. ...+..+|..+.|.. ++.+
T Consensus 7 ~~~~~v~~~~~-s~dg~~~~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~h~~~v~~~~~~~----~~~~ 65 (337)
T 1gxr_A 7 MGSKPAYSFHV-TADGQMQPVPFPPDALIGPGIPRHA-----------RQIN-----TLNHGEVVCAVTISN----PTRH 65 (337)
T ss_dssp EEEEECCEEEE-CSSSCEEECCCCTTSSSSTTCCSEE-----------EEEE-----EECCSSCCCEEEECS----SSSE
T ss_pred ccCCceeEEEE-CCCCCEEEeecCCCcEeccccCCcc-----------ccce-----eccCCCceEEEEEec----CCcE
Confidence 45678999999 6899999999999988888554420 0111 113556888998875 5667
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEE-Eee-cCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTK-LAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~-~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
++++++ ..+.++.+........+. +.. .....+..+.+.+ +...+++++.+|.+.+||...-
T Consensus 66 l~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~--- 129 (337)
T 1gxr_A 66 VYTGGK-----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--------DGCTLIVGGEASTLSIWDLAAP--- 129 (337)
T ss_dssp EEEECB-----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--------TSSEEEEEESSSEEEEEECCCC---
T ss_pred EEEcCC-----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--------CCCEEEEEcCCCcEEEEECCCC---
Confidence 776663 356777765543222221 111 2344555555543 2356788888999999998651
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCE
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
.......+..|...|++++|+++++.+++++ |+.+++|+............|.+.+.+ |+|++++
T Consensus 130 ------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 130 ------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp --------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ------------CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence 1113345678999999999999999999988 999999986654433333668899988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
|++++.||.|++||+..... +..+ .+...|.+++|+|++.+|++++.||.|++||++....
T Consensus 198 l~~~~~dg~i~~~d~~~~~~--~~~~---------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-------- 258 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQ--LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------- 258 (337)
T ss_dssp EEEEETTSEEEEEETTTTEE--EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--------
T ss_pred EEEEecCCcEEEEECCCCce--Eeee---------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--------
Confidence 99999999999999955442 1112 2457899999999999999999999999999984322
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
.....+...|++++|+|++.+|++++.||.|++||+.+++.+... .+...|.++.|++
T Consensus 259 --------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----~~~~~v~~~~~s~---- 316 (337)
T 1gxr_A 259 --------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISV---- 316 (337)
T ss_dssp --------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEECT----
T ss_pred --------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----cCCCcEEEEEECC----
Confidence 344566788999999999999999999999999999999887433 4678999999999
Q ss_pred CCCCcEEEEEECCCcEEEEEC
Q 003360 406 GFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
++.+|++++.||.|++|++
T Consensus 317 --~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 --DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --TSCEEEEEETTSCEEEEEE
T ss_pred --CCCEEEEecCCCeEEEEEE
Confidence 5899999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=254.85 Aligned_cols=294 Identities=7% Similarity=0.004 Sum_probs=215.8
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++|+|+++.+++++ |+++++|+............|...|.+ |+|++.++++|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34556789999999999999999999999 999999976543333222557777877 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+...... ........+..|...|++++|+|++..|++|+.||+|++||++++.. .
T Consensus 135 ~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------------~---- 189 (354)
T 2pbi_B 135 LTFDKNE----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------------L---- 189 (354)
T ss_dssp CCCCTTC----CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------E----
T ss_pred Eeccccc----cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------------E----
Confidence 8432100 00011223457889999999999999999999999999999985432 1
Q ss_pred EEEeeccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 340 VKVMKINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+..|...|++++|+| +|.+|++|+.||+|++||+++++++... ..|...|.+++|+| ++.+|++|+.
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~ 260 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYP------SGDAFASGSD 260 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT------TSSEEEEEET
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeC------CCCEEEEEeC
Confidence 23445778899999987 5789999999999999999999988554 47889999999999 5899999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~ 496 (826)
|++|++||+++++.+..+..+. ....+.++. +++++.++++++ ++.|+||
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~-~~~~~~~~~----------------------------~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKES-IIFGASSVD----------------------------FSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTT-CCSCEEEEE----------------------------ECTTSSEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCC-cccceeEEE----------------------------EeCCCCEEEEEECCCcEEEE
Confidence 9999999999887766542211 111122222 344556666665 4589999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
++.. .+.+....-+ ..-+. .+..++.+..|+....||.|++|+
T Consensus 312 d~~~-----~~~~~~l~~h-~~~v~-~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLK-----GSRVSILFGH-ENRVS-TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTT-----CSEEEEECCC-SSCEE-EEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCC-----CceEEEEECC-CCcEE-EEEECCCCCEEEEEcCCCCEEecC
Confidence 9862 2222222212 11111 111126677888889999999874
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=261.65 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=184.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce---eec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL---LDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~---~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
...|...|++++|+|++..++++.|++|++|+...... ..+ ..+|.+.|.+ |+|++++|++|+.||+|++||+.
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 45688899999999998877666699999996543221 111 3479999999 99999999999999999999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... +.. +..|...|++++|+|++. +|++++.||+|++||++++.... . +
T Consensus 170 ~~~~--~~~--------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--------------~-----~ 220 (357)
T 4g56_B 170 QKAV--LKS--------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--------------R-----I 220 (357)
T ss_dssp TTEE--EEE--------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--------------B-----C
T ss_pred CCcE--EEE--------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--------------e-----e
Confidence 5542 122 346889999999999874 78999999999999998654311 0 1
Q ss_pred EEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 341 KVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
....+...|++++|+|+ +.+||+|+.||.|++||+++++++... ..|..+|++++|+|. ++.+|++|+.|+
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~-----~~~~lasgs~D~ 292 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYH-----SSPFLASISEDC 292 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSS-----SSCCEEEEETTS
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCC-----CCCEEEEEeCCC
Confidence 22234667999999997 468899999999999999999887554 378889999999983 246899999999
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCC-CCCEEEEee-cCcEEEEe
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVP-KQWFVLLCS-EKAACAYS 497 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~s-e~~irv~s 497 (826)
+|+|||..+++++..+ .|. ..+.++.+ +| ++.+++.|+ |+.|++|+
T Consensus 293 ~i~iwd~~~~~~~~~~-~H~---~~V~~vaf----------------------------sP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 293 TVAVLDADFSEVFRDL-SHR---DFVTGVAW----------------------------SPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CEEEECTTSCEEEEEC-CCS---SCEEEEEE----------------------------CSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCcEeEEC-CCC---CCEEEEEE----------------------------eCCCCCEEEEEcCCCeEEEEE
Confidence 9999999999887664 332 33344433 33 345666555 57999999
Q ss_pred ccc
Q 003360 498 LSH 500 (826)
Q Consensus 498 l~~ 500 (826)
++.
T Consensus 341 ~~~ 343 (357)
T 4g56_B 341 LPS 343 (357)
T ss_dssp CC-
T ss_pred CCC
Confidence 973
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=257.25 Aligned_cols=287 Identities=13% Similarity=0.150 Sum_probs=201.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC--------c---eeecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVP--------P---LLDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~--------~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
.|+..|++++|+|||+.+++++|.++++|+.... . .......|..+|.+ |++++ .|++|+.||+|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 4677899999999999999888888888863210 0 01111235677888 89985 688999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|||+........... ....|...|++|+|+|++++|++|+.||+|++||++++.. .
T Consensus 107 lWd~~~~~~~~~~~~------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-----------------~- 162 (344)
T 4gqb_B 107 LWELDENETLIVSKF------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-----------------L- 162 (344)
T ss_dssp EEEECTTSSCEEEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------E-
T ss_pred EEeccCCCceeEeec------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------------E-
Confidence 999944332111111 1246889999999999999999999999999999984422 1
Q ss_pred EEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..+..|...|++++|++++. ++++|+.||+|++||+++++.+..... ..+...+.+++|++. ++.+|++|
T Consensus 163 ---~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~-----~~~~l~sg 233 (344)
T 4gqb_B 163 ---SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQ-----QSEVFVFG 233 (344)
T ss_dssp ---EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSS-----CTTEEEEE
T ss_pred ---EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCC-----CCcceEEe
Confidence 33445788999999999884 789999999999999999988754432 245667899999984 47789999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEee-cCcE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCS-EKAA 493 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~s-e~~i 493 (826)
+.|++|++||.++++++.++..|.. .+.++.+ ++++ .+++.++ |+.|
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~~---~v~~v~f----------------------------sp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHSQ---CVTGLVF----------------------------SPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCSS---CEEEEEE----------------------------CSSSSCCEEEEETTSCE
T ss_pred ccCCcEEEEECCCCcEEEEEcCCCC---CEEEEEE----------------------------ccCCCeEEEEEeCCCeE
Confidence 9999999999999999988866643 2333333 2332 4555554 5689
Q ss_pred EEEeccccccccceeeeeeecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCC
Q 003360 494 CAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 494 rv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~ 549 (826)
+||++.. .+.+ +..-+ ...+....+ ++.+ ..++....||.|+++.+|.
T Consensus 283 ~vwd~~~-----~~~~-~~~~H-~~~V~~v~~-sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 283 AVLDSSL-----SELF-RSQAH-RDFVRDATW-SPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECTTC-----CEEE-EECCC-SSCEEEEEE-CSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEEECCC-----CcEE-EEcCC-CCCEEEEEE-eCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999873 2222 22222 222222112 2333 3455667799999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=260.17 Aligned_cols=302 Identities=9% Similarity=0.067 Sum_probs=215.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.++..|++++| +|+|.+||+|..||.|++||+.++.. ..+..+ ..+..+|..+.|.. ++
T Consensus 6 ~~~~~i~~~~~-s~~~~~l~~~~~d~~v~i~~~~~~~~----------~~~~~~----~~h~~~v~~~~~~~----~~-- 64 (372)
T 1k8k_C 6 FLVEPISCHAW-NKDRTQIAICPNNHEVHIYEKSGNKW----------VQVHEL----KEHNGQVTGVDWAP----DS-- 64 (372)
T ss_dssp SCSSCCCEEEE-CTTSSEEEEECSSSEEEEEEEETTEE----------EEEEEE----ECCSSCEEEEEEET----TT--
T ss_pred ccCCCeEEEEE-CCCCCEEEEEeCCCEEEEEeCCCCcE----------Eeeeee----cCCCCcccEEEEeC----CC--
Confidence 46789999999 58999999999999999999877410 001111 12334555555543 12
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
..+++++.+|.+.+||...-
T Consensus 65 -------------------------------------------------------~~l~~~~~dg~i~vwd~~~~----- 84 (372)
T 1k8k_C 65 -------------------------------------------------------NRIVTCGTDRNAYVWTLKGR----- 84 (372)
T ss_dssp -------------------------------------------------------TEEEEEETTSCEEEEEEETT-----
T ss_pred -------------------------------------------------------CEEEEEcCCCeEEEEECCCC-----
Confidence 23344555667777776441
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCC
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~ 243 (826)
.......+..|...|++++|+++++.+++++ |+.+++|+..... ...+..+|.+.|.+ |+|++
T Consensus 85 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 85 ----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred ----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 0112233467888999999999999999988 9999999655433 23334678899988 99999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeee-----e---ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLI-----L---SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i-----~---~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
++|++|+.||.|++||+........ . .-..+....+..|...|++++|+|++.+|++|+.||.|++||++.+
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999999631110000 0 0000111223467789999999999999999999999999999844
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC--CeeEEe----------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG--PTVLYQ---------- 383 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~--~~~l~~---------- 383 (826)
.. . ..+..+..+|++++|+|++.+|++| .||.|++||+.. ++....
T Consensus 235 ~~-----------------~----~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 292 (372)
T 1k8k_C 235 MA-----------------V----ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSS 292 (372)
T ss_dssp TE-----------------E----EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC----
T ss_pred ce-----------------e----EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccch
Confidence 32 1 2334556789999999999888887 899999999988 532110
Q ss_pred --------------------------eecccCCCCCeeEEEEeecccCCCCC---cEEEEEECCCcEEEEECCCCc
Q 003360 384 --------------------------KHIASDISSGIVSLQFETCSLQGFEK---NFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 --------------------------~~~~~~~~~~V~sl~f~~~~~~~~d~---~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.....+|..+|++++|.+. ++ .+|++|+.||.|++|++.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 293 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-----GKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES-----TTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC-----CCcceeeEEEecCCCceEEEEecChh
Confidence 1222478999999998763 45 899999999999999998654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=262.03 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=181.4
Q ss_pred ccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 190 FLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 190 ~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.|...|++++|+| ++..+++++ |+.|++|+........+ ...|.+.|.+ |+|++++|++|+.||+|++||+.+.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 195 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH 195 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence 4677899999999 778888888 99999997765444444 2334577888 9999999999999999999999644
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. .. +..|...|++++|+|++. +|++|+.||.|++||++..... +.. +..
T Consensus 196 ~~---~~--------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~~-----~~~ 246 (383)
T 3ei3_B 196 EI---FK--------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------------NSY-----IAE 246 (383)
T ss_dssp EE---EE--------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------TCE-----EEE
T ss_pred EE---EE--------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------cce-----EEE
Confidence 42 22 246888999999999998 9999999999999999854321 112 334
Q ss_pred eeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeec----ccCCCCCe----------eEEEEeecccCCC
Q 003360 343 MKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHI----ASDISSGI----------VSLQFETCSLQGF 407 (826)
Q Consensus 343 ~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~----~~~~~~~V----------~sl~f~~~~~~~~ 407 (826)
..|...|++++|+| ++.+|++|+.||.|++||++++..+..... ...|..++ ..+.|++
T Consensus 247 ~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~------ 320 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP------ 320 (383)
T ss_dssp EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC------
T ss_pred ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC------
Confidence 46788999999999 999999999999999999988766532221 11223333 3344444
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL 487 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 487 (826)
++.+ +|+.|+.|++||..+++++.++..+... ..+.++ .+++++.++++
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~-~~~~~~----------------------------~~s~~g~~l~s 369 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA-GIISLN----------------------------KFSPTGDVLAS 369 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC-SCCCEE----------------------------EECTTSSEEEE
T ss_pred Cccc--ccCCCCeEEEEecCCCceeeeecCCCCC-ceEEEE----------------------------EEecCccEEEE
Confidence 3444 6778999999999999998887543211 111111 23456678888
Q ss_pred eecCcEEEEecc
Q 003360 488 CSEKAACAYSLS 499 (826)
Q Consensus 488 ~se~~irv~sl~ 499 (826)
++++.|+||++.
T Consensus 370 ~sd~~i~iw~~~ 381 (383)
T 3ei3_B 370 GMGFNILIWNRE 381 (383)
T ss_dssp EETTEEEEEECC
T ss_pred ecCCcEEEEecC
Confidence 889999999986
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=283.94 Aligned_cols=292 Identities=12% Similarity=0.092 Sum_probs=213.6
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
.+..|...|++++|...++.+|++|+.||+|++||+.+...... ..... ...|..+|..+.|+.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-------~~~~~----~~~h~~~v~~v~~s~----- 440 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-------VAQRR----LTGHSHFVEDVVLSS----- 440 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-------EEEEE----EECCSSCEEEEEECT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-------cccce----ecCCCCcEEEEEECC-----
Confidence 45568889999999655678999999999999999876410000 00000 011222333333321
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+...++.++.+|.|.+||...-
T Consensus 441 --------------------------------------------------------~g~~l~sgs~Dg~v~vwd~~~~-- 462 (694)
T 3dm0_A 441 --------------------------------------------------------DGQFALSGSWDGELRLWDLAAG-- 462 (694)
T ss_dssp --------------------------------------------------------TSSEEEEEETTSEEEEEETTTT--
T ss_pred --------------------------------------------------------CCCEEEEEeCCCcEEEEECCCC--
Confidence 1234556666788888987651
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee--eCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS--HSK 241 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~--~s~ 241 (826)
.....+..|...|++++|+|+++.+++++ |++|++|+......... ..+|...|.+ |+|
T Consensus 463 ---------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 463 ---------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp ---------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred ---------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 12345678999999999999999999998 99999997654333222 2468888988 888
Q ss_pred CC--CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 242 VK--NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~~--~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
++ .+|++|+.||+|++||+..... .. .+..|...|++++|+|++++|++|+.||+|++||++++..
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~--~~--------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-- 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKL--RS--------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-- 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcE--EE--------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--
Confidence 76 6899999999999999954442 11 2346889999999999999999999999999999984422
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-----------
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------- 388 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------- 388 (826)
+....++..|.+++|+|++.+|++++ ++.|+|||++++.++.......
T Consensus 596 --------------------~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 596 --------------------LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp --------------------EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------
T ss_pred --------------------EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccc
Confidence 33334567899999999998777766 5569999999998875443211
Q ss_pred -----CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 389 -----DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 389 -----~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.+...+++++|+| |+.+|++|+.||+|++|++.
T Consensus 655 ~~~~~~~~~~~~~l~~sp------dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSA------DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEECT------TSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEcC------CCCEEEEEcCCCeEEEEecc
Confidence 1112478899999 69999999999999999975
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-27 Score=260.80 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=175.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.+.+||... ......+..|...|++++|+|+++.+++++ |+.|++|+......
T Consensus 111 ~l~~~~~dg~i~iwd~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNF-----------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp EEEEEETTSCEEEECTTS-----------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred EEEEEECCCCEEEEeCCC-----------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 455666778888888654 112233468999999999999999999998 99999997654333
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc----------------cccccCCCCeE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE----------------KDFSLSGIPLT 287 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~----------------~~~~~h~~~V~ 287 (826)
.....+|.+.|.+ |+|++++|++|+.||+|++||+..... +..+..... .....+...|+
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 3323679999998 999999999999999999999954442 222221100 00112335566
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEec
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSD 366 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~ 366 (826)
+++|+|++.+|++|+.||.|++||++.... .. .....+...|++++|+|++. +|++|+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~---~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----------------TI---QLPSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCE-----------------EE---EECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCce-----------------eE---EcccccCCCceeEEEeCCCCCEEEEEeC
Confidence 666789999999999999999999984432 10 11223567899999999998 9999999
Q ss_pred CCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 367 QGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 367 dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
||.|++||++++.. +.... ..+..+|.++.|.+ +.+|++++.|++|++|++.++
T Consensus 312 dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~-------~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFL--INEGTPINNVYFAA-------GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEE--ESTTSCEEEEEEET-------TEEEEEETTTEEEEEEEECCT
T ss_pred CCeEEEEEcCCCcCchhhhh--ccCCCCceEEEeCC-------CCEEEEecCCccEEEEeccCC
Confidence 99999999998754 32232 24677888886653 789999999999999998864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=265.17 Aligned_cols=205 Identities=8% Similarity=0.038 Sum_probs=158.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEe--c-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 190 FLDSSITAMKLITGNSFILSS--A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~--~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.++..+.+++|+|||++++++ + |++|++|+......... ..|.+.|.+ |+|++++|++++.|+.+.+|+.++..
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 455679999999999998754 3 78999998765433322 457888988 99999999999866554444445554
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG----MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg----~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
... . ....|...|++++|+|++..+++++.|+ .+++|++..... ......
T Consensus 210 ~~~---~------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----------------~~~~~~ 263 (365)
T 4h5i_A 210 IAR---K------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----------------SVLRSK 263 (365)
T ss_dssp EEE---E------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----------------EEEEEE
T ss_pred eee---e------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----------------cceeee
Confidence 211 1 1135778899999999999999999887 678888763211 000012
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
....+..+|++++|+|+|++||+|+.||+|+|||+.+++++.. ...+|..+|++++|+| |+.+|++|+.|++
T Consensus 264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH~~~V~~v~fSp------dg~~laS~S~D~t 335 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAHSFAITEVTISP------DSTYVASVSAANT 335 (365)
T ss_dssp EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSSSSCEEEEEECT------TSCEEEEEETTSE
T ss_pred eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcccCCEEEEEECC------CCCEEEEEeCCCe
Confidence 3445677899999999999999999999999999999998844 3468999999999999 7999999999999
Q ss_pred EEEEECCCC
Q 003360 421 VLVLDSDNG 429 (826)
Q Consensus 421 V~iwd~~tg 429 (826)
|+|||+..+
T Consensus 336 vrvw~ip~~ 344 (365)
T 4h5i_A 336 IHIIKLPLN 344 (365)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCCC
Confidence 999998643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-27 Score=249.82 Aligned_cols=208 Identities=10% Similarity=0.087 Sum_probs=160.2
Q ss_pred ecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCC--CCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVri 257 (826)
+..|..+|++++|+++ +..+++++ |++|++|+..... ...+ ..|...|.+ |+|+ +.+|++|+.||+|++
T Consensus 49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 3578889999999864 88999988 9999999765432 2222 568999988 9987 889999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-------------CCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-------------SRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-------------~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
||+....... ...+..|...|++++|+|+ +++|++|+.|++|+|||++.+....
T Consensus 128 wd~~~~~~~~--------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----- 194 (297)
T 2pm7_B 128 VEFKENGTTS--------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----- 194 (297)
T ss_dssp EEBCSSSCBC--------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-----
T ss_pred EEecCCCcee--------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-----
Confidence 9994332100 1123468889999999997 5799999999999999998432100
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC---CEEEEEecCCeEEEEecCCCee--EEeeecccCCCCCeeEEEE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---QHLAVGSDQGYVYLLDTEGPTV--LYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~lasGs~dG~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl~f 399 (826)
... ..+..|...|++++|+|++ .+||+|+.||+|+|||++.... .........|...|.+++|
T Consensus 195 ---------~~~---~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 195 ---------VLE---STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp ---------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred ---------EEE---EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence 010 2344578889999999984 7999999999999999987531 1111111467789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+| ++.+|++++.|++|++|+..
T Consensus 263 s~------~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 263 SL------SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CS------SSCCEEEEETTSCEEEEEEC
T ss_pred CC------CCCEEEEEcCCCcEEEEEEC
Confidence 99 59999999999999999976
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=258.08 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=215.7
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
..+..|...|++++| +| .+||+|+.||.|++||+.++..... ...+..+ ..+..+|..+.|......
T Consensus 10 ~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~----~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 10 NAGKAHDADIFSVSA-CN--SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSH----FVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp EESSCSSSCEEEEEE-CS--SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEE----ECCTTCEEEEEEEEEEET
T ss_pred hhhhhhhcCeEEEEe-cC--CeEEEEcCCCEEEEEECCCcccccC------CCcceEE----ecCCCcEEEEEEeccccc
Confidence 445567889999999 44 8999999999999999988621110 0011111 134557777777652111
Q ss_pred Cc---eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 87 AS---RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 87 ~g---~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++ .++ +.++.+|.|.+||..
T Consensus 77 ~g~~~~~l---------------------------------------------------------~s~~~dg~i~iw~~~ 99 (397)
T 1sq9_A 77 DAFELCLV---------------------------------------------------------ATTSFSGDLLFYRIT 99 (397)
T ss_dssp TTEEEEEE---------------------------------------------------------EEEETTSCEEEEEEE
T ss_pred CCccccEE---------------------------------------------------------EEEcCCCCEEEEEcc
Confidence 12 333 334445666677655
Q ss_pred hHHHHHhhccCCCCCCCCccceeeeccc-----CCCEEEEEEe----eCCCe-EEEec-CCcEEEeccCC------C-ce
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFL-----DSSITAMKLI----TGNSF-ILSSA-DEDYSLLAKSV------P-PL 225 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~Vt~~~fs----~~~~~-l~~~~-d~~i~~w~~~~------~-~~ 225 (826)
.-. . ........+..| ...|++++|+ ++++. +++++ |+.|++|+... . ..
T Consensus 100 ~~~-----~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 100 RED-----E-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ECT-----T-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred CCc-----c-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 410 0 011113345566 5899999999 99999 99988 99999996544 2 22
Q ss_pred e-----ecc------cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC---CCCeEEE
Q 003360 226 L-----DFE------TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS---GIPLTAL 289 (826)
Q Consensus 226 ~-----~~~------~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h---~~~V~~l 289 (826)
. .+. ..|...|.+ |+|++ ++++|+.||.|++||+..... +..+.. ...| ...|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~-----~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYNFES-----QHSMINNSNSIRSV 239 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEEEEC-----CC---CCCCCEEEE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--eEEEec-----cccccccCCccceE
Confidence 2 221 347788888 99999 999999999999999954442 222221 0126 7899999
Q ss_pred EEeCCCCEEEEEeCC---CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLVSGDQS---GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~Lasgs~d---g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|++.+|++|+.| |.|++||++..... ..+.......... +....|...|++++|+|++.+|++|+.
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERI-----GSLSVPTHSSQAS---LGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECBC-----------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCccc-----ceeccCccccccc---ccccccCCcEEEEEECCCCCEEEEEeC
Confidence 999999999999999 99999999854321 0000000000000 011116788999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeeccc---CC---------------CCCeeEEEEeecccCCCCC----------cEEEEEECC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIAS---DI---------------SSGIVSLQFETCSLQGFEK----------NFLVIATKD 418 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~---~~---------------~~~V~sl~f~~~~~~~~d~----------~~l~sgs~D 418 (826)
||.|+|||+++++++....... .| ..+|.+++|++ ++ .+|++++.|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~------~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK------KGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC------TTTSBSTTCTTSCEEEEEETT
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc------ccccccccccccceEEEecCC
Confidence 9999999999999886654110 34 88999999999 35 799999999
Q ss_pred CcEEEEECCCCc
Q 003360 419 SSVLVLDSDNGN 430 (826)
Q Consensus 419 g~V~iwd~~tg~ 430 (826)
|.|++|++.+|+
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999998764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=256.46 Aligned_cols=313 Identities=12% Similarity=0.162 Sum_probs=218.6
Q ss_pred cccccceEEEecCC----CCCEEEEEEecCcEEEEeCCCcccccccccccccccccccc-CCCCCCcCCeEEEEEeeeCC
Q 003360 11 HETKQVTSACWACP----IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLN-LGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 11 ~~~~~i~slcW~~p----~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pI~~l~W~~~~~ 85 (826)
.|...|++++|+ | ....++++..+|.|++||+.++..... +. .....+..+|..+.|+....
T Consensus 16 ~h~~~v~~i~~~-p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 16 DHNQPLFGVQFN-WHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------LQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TTCSCEEEEEEC-TTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------EEEEECSCTTCCEEEEEEEECTT
T ss_pred CCCCceEEEEEe-cccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------eeeccccCCCCcEEEEEeccCCC
Confidence 468899999995 4 356788888889999999987521111 11 11122445677777766332
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
.++.+ +++++.+|.|.+||....
T Consensus 83 ~~~~~---------------------------------------------------------l~~~~~dg~i~v~d~~~~ 105 (366)
T 3k26_A 83 TSHPL---------------------------------------------------------LAVAGSRGIIRIINPITM 105 (366)
T ss_dssp TCCEE---------------------------------------------------------EEEEETTCEEEEECTTTC
T ss_pred CCCCE---------------------------------------------------------EEEecCCCEEEEEEchhc
Confidence 22333 344445567777876541
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeecc---cccCCccee--
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFE---TKLKDGSQS-- 238 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~---~~h~g~V~~-- 238 (826)
.....+..|...|++++|+| ++..+++++ |+.|++|+.......... .+|.+.|.+
T Consensus 106 -----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 106 -----------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp -----------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred -----------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 12334678999999999999 899999988 999999987654433332 578999998
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccc--------------------ccccccccCCCCeEEEEEeCCCCEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ--------------------QSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--------------------~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
|+|++++|++|+.||+|++||+..... +..+.. ........|...|++++|+ +.+|
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRM--MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHH--HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCcc--ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 999999999999999999999954331 011110 0001122378899999999 6799
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC--CCEEEEEecCCeEEEEecC
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN--SQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~lasGs~dG~V~vwD~~ 376 (826)
++++.||.|++||++........ +.......... ..+..+...|++++|+|+ +.+|++|+.||.|++||+.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDK----IKPSESNVTIL---GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGG----CCTTCCCEEEE---EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEecCCEEEEEeCCCccccccc----cccCCcchhee---ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 99999999999999865431100 00000110111 334456778999999999 9999999999999999999
Q ss_pred CCeeEE-eeecccCC--CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 377 GPTVLY-QKHIASDI--SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 377 ~~~~l~-~~~~~~~~--~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+++... .......| ..+|++++|++ ++.+|++++.||.|++||+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSR------DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECT------TSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCC------CCCeEEEEeCCCEEEEEEec
Confidence 875321 01111234 78999999999 69999999999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=254.98 Aligned_cols=286 Identities=17% Similarity=0.169 Sum_probs=202.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccccc------------------CCccee--eCCCCCEEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKL------------------KDGSQS--HSKVKNLFITG 249 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h------------------~g~V~~--~s~~~~~l~Tg 249 (826)
.|...|++++|+|+++++++++++.+++|+............| ...|.+ |+|++++|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 5899999999999999999988999999975443322211111 223666 99999999999
Q ss_pred ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 250 HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 250 s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
+.||+|+|||+..... +.. +..|...|++++|+|++..|++|+.|++|++||++++..
T Consensus 142 ~~d~~i~iwd~~~~~~--~~~--------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~------------ 199 (393)
T 1erj_A 142 AEDRLIRIWDIENRKI--VMI--------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------------ 199 (393)
T ss_dssp ETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred cCCCeEEEEECCCCcE--EEE--------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee------------
Confidence 9999999999955442 122 346889999999999999999999999999999984432
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeec----ccCCCCCeeEEEEeeccc
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHI----ASDISSGIVSLQFETCSL 404 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~----~~~~~~~V~sl~f~~~~~ 404 (826)
.....+...|++++|+| ++.+|++|+.||.|++||++++.++..... ..+|...|.+++|++
T Consensus 200 ----------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--- 266 (393)
T 1erj_A 200 ----------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR--- 266 (393)
T ss_dssp ----------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT---
T ss_pred ----------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC---
Confidence 23334567899999999 899999999999999999999887754421 146888999999999
Q ss_pred CCCCCcEEEEEECCCcEEEEECCCCceEE------------eeeccCCCCCcceEEEEecCCCCcccCccccccccccCC
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDNGNMLS------------TNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKG 472 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~------------~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~ 472 (826)
++.+|++|+.|++|++||+.++.... ++..|. ..+.++
T Consensus 267 ---~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~------------------------ 316 (393)
T 1erj_A 267 ---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSV------------------------ 316 (393)
T ss_dssp ---TSSEEEEEETTSEEEEEEC---------------CEEEEEECCS---SCEEEE------------------------
T ss_pred ---CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc---CcEEEE------------------------
Confidence 69999999999999999998654322 211111 111111
Q ss_pred CCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-----CCceEEEEEEeeceEEEec
Q 003360 473 SPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-----GSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 473 ~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-----~~~~~lv~~~~~G~I~i~s 546 (826)
.+.+++.+++.++ |+.|++|++.. .+.+.....+... +....+.. +.+..++....||.|++|.
T Consensus 317 ----~~~~~~~~l~sgs~D~~v~iwd~~~-----~~~~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 317 ----ATTQNDEYILSGSKDRGVLFWDKKS-----GNPLLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ----EECGGGCEEEEEETTSEEEEEETTT-----CCEEEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ----EECCCCCEEEEEeCCCeEEEEECCC-----CeEEEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 2334555666665 45899999873 2333333322111 11111111 3467788888999999998
Q ss_pred cCCc
Q 003360 547 LPEL 550 (826)
Q Consensus 547 lP~L 550 (826)
+...
T Consensus 387 ~~~~ 390 (393)
T 1erj_A 387 YKKI 390 (393)
T ss_dssp EEEC
T ss_pred cccc
Confidence 7543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=264.76 Aligned_cols=343 Identities=9% Similarity=0.082 Sum_probs=239.3
Q ss_pred ccccceEEEecCCCCC-EEEEE----------EecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEE
Q 003360 12 ETKQVTSACWACPIGS-KVAVG----------YSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKW 80 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~-~latg----------~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W 80 (826)
+..+|.+++| +|+|. +||+| +.||.|++||+.++... .++. ...+..+|..+.|
T Consensus 11 ~~~~v~~~~~-sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~-----~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 11 EFSRTATFAW-SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIA-----SLQVDSKFNDLDW 75 (416)
T ss_dssp EEEESCBCCB-CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSC-----CCCCSSCEEEEEE
T ss_pred hhhhcceEee-CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEE-----EEecCCceEEEEE
Confidence 3458999999 57987 99999 89999999999886211 0111 1124567999999
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcc-eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEE
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTES-RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYA 159 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~-~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~ 159 (826)
.. ++.++++|+.+ ..+.++.+...... +.........+.+..+.+.+. ....++.++.+|.+.+
T Consensus 76 s~----~~~~l~~~~~d----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 76 SH----NNKIIAGALDN----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-------QDNVLASGGNNGEIFI 140 (416)
T ss_dssp CS----SSSCEEEEESS----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-------STTBEEEECSSSCEEB
T ss_pred CC----CCCeEEEEccC----CeEEEeecccccccccchhhccCCccceEEEEEcCC-------CCCEEEEEcCCCeEEE
Confidence 65 45566666653 34666666542211 122111123344555544432 1356788889999999
Q ss_pred ecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceeeccccc-----
Q 003360 160 FDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLDFETKL----- 232 (826)
Q Consensus 160 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h----- 232 (826)
||...... .. .............|...|++++|+++ +..+++++ |+.|++|+............|
T Consensus 141 wd~~~~~~-------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 141 WDMNKCTE-------SP-SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CBTTTTSS-------CT-TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred EECCCCcc-------cc-ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 99876210 00 00000011123578899999999999 67888888 999999976553332221222
Q ss_pred -CCccee--eCCCC-CEEEEEECCC---cEEEEeCCCC-ceeeeeecccccccccc-cCCCCeEEEEEeC-CCCEEEEEe
Q 003360 233 -KDGSQS--HSKVK-NLFITGHSDG---AINFWDVSCP-LFLLILSLKQQSEKDFS-LSGIPLTALYYDG-TSRVLVSGD 302 (826)
Q Consensus 233 -~g~V~~--~s~~~-~~l~Tgs~DG---tVriWD~s~~-~~~~i~~l~~~~~~~~~-~h~~~V~~l~fsp-~~~~Lasgs 302 (826)
...|.+ |+|++ .++++|+.|| .|++||+... .. ...+. .|...|++++|+| ++.+|++|+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQKGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence 677887 99997 6999999999 9999999443 21 11234 6788999999999 899999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.||.|++||++++.. . ..+..|...|++++|+|++ .+|++|+.||.|++||+......
T Consensus 283 ~dg~v~~wd~~~~~~-----------------~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 283 RDNTVLLWNPESAEQ-----------------L----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSSEEEEECSSSCCE-----------------E----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CCCCEEEeeCCCCcc-----------------c----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 999999999984432 1 3344567889999999999 89999999999999999876532
Q ss_pred Eee--------------------------------ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 382 YQK--------------------------------HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 382 ~~~--------------------------------~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... .....+..++.+++|++ |+.+|++++.|++|+||++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF------GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET------TTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee------CCeEEEEeCCCCeEEEEEeccC
Confidence 110 00011567788899999 6999999999999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-26 Score=250.03 Aligned_cols=286 Identities=9% Similarity=0.067 Sum_probs=217.9
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
+..|...|++++| +|+|++||+|+.||.|++||+.++.... .+ ..+..+|..+.|.. ++
T Consensus 28 l~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~----~~h~~~v~~~~~~~----~~ 86 (369)
T 3zwl_B 28 LTGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLNGERLG------------TL----DGHTGTIWSIDVDC----FT 86 (369)
T ss_dssp EECCSSCEEEEEE-CTTSCEEEEEESSSCEEEEETTTCCEEE------------EE----CCCSSCEEEEEECT----TS
T ss_pred EEEeeceEEEEEE-cCCCCEEEEEeCCCEEEEEeCCCchhhh------------hh----hhcCCcEEEEEEcC----CC
Confidence 4557889999999 5799999999999999999988752111 11 12333555555532 11
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
..+++++.+|.+.+||...-
T Consensus 87 ---------------------------------------------------------~~l~s~~~dg~i~iwd~~~~--- 106 (369)
T 3zwl_B 87 ---------------------------------------------------------KYCVTGSADYSIKLWDVSNG--- 106 (369)
T ss_dssp ---------------------------------------------------------SEEEEEETTTEEEEEETTTC---
T ss_pred ---------------------------------------------------------CEEEEEeCCCeEEEEECCCC---
Confidence 23445556677888887551
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-----CcEEEeccCCCc------------eeeccc
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-----EDYSLLAKSVPP------------LLDFET 230 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-----~~i~~w~~~~~~------------~~~~~~ 230 (826)
. ....+. |...|++++|+|++..+++++ + +.+.+|+..... ... ..
T Consensus 107 -------------~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~-~~ 170 (369)
T 3zwl_B 107 -------------Q-CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK-II 170 (369)
T ss_dssp -------------C-EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE-EE
T ss_pred -------------c-EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee-cc
Confidence 0 112223 778899999999999999988 7 899999543221 111 13
Q ss_pred ccCC--ccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 231 KLKD--GSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 231 ~h~g--~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.|.+ .+.+ |+|++++|++|+.||.|++||+.. ... +.. +..|...|++++|+|++.+|++++.||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDS--------IDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEE--------EECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEE--------EecCCCceeEEEECCCCCEEEEecCCc
Confidence 3554 6766 999999999999999999999954 331 122 245778999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC--------------eEE
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG--------------YVY 371 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG--------------~V~ 371 (826)
.|++||+++... +....+...+.+++|+|++.++++|+.++ .|+
T Consensus 241 ~i~v~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 241 NSFLVDVSTLQV----------------------LKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEEEETTTCCE----------------------EEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eEEEEECCCCce----------------------eeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 999999984432 33344678899999999999999999998 899
Q ss_pred EEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 372 LLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 372 vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+||+.+++.+.... +|...|++++|+| ++.+|++++.||.|++|+..++...
T Consensus 299 ~~d~~~~~~~~~~~---~~~~~v~~~~~s~------~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQ---GHFGPLNTVAISP------QGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEETTTCCEEEEEE---CCSSCEEEEEECT------TSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEecCCCcchhhee---cccCcEEEEEECC------CCCEEEEEcCCCeEEEEECccccch
Confidence 99999998885553 7888999999999 6999999999999999999866543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-26 Score=248.81 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=206.6
Q ss_pred eeeecccCCCEEEEEE-----ee-CCCeEEEec-CCcEEEeccCCCc-------eeecccccCCccee--eCCCCCEEEE
Q 003360 185 MLKMPFLDSSITAMKL-----IT-GNSFILSSA-DEDYSLLAKSVPP-------LLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~f-----s~-~~~~l~~~~-d~~i~~w~~~~~~-------~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
...+.+|...|++++| ++ +++.+++|+ |++|++|+..... ......+|.+.|.+ |+|++.++++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3457899999999999 66 899999999 9999999754211 11123679999998 9999999999
Q ss_pred EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 249 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|+.||+|++||+..... +. .+..|...|++++|+|++++|++|+.||+|++||+.....
T Consensus 94 ~s~D~~v~lwd~~~~~~--~~--------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----------- 152 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTT--YK--------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----------- 152 (343)
T ss_dssp EETTSEEEEEETTSSCE--EE--------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-----------
T ss_pred EcCCCcEEEEECCCCcE--EE--------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-----------
Confidence 99999999999944432 12 2346889999999999999999999999999999872210
Q ss_pred cCCCCeEEEEEEEE---eeccCCeEEEEEccCC----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 329 SKKGNSHIIHSVKV---MKINGSIISLNMNRNS----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 329 s~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
... ..|...|.+++|+|++ .++++|+.||+|++||. ...+.... ..|...|.
T Consensus 153 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~---~~h~~~v~ 217 (343)
T 2xzm_R 153 -----------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF---KAHESNVN 217 (343)
T ss_dssp -----------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE---ECCSSCEE
T ss_pred -----------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE---cCccccce
Confidence 111 1346679999999987 78999999999999995 45555433 37888999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSP 474 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (826)
+++|+| ++.+|++|+.|++|++||+.+ +.....+. + ...+.++.
T Consensus 218 ~~~~s~------~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~---~~~v~~v~------------------------- 262 (343)
T 2xzm_R 218 HLSISP------NGKYIATGGKDKKLLIWDILNLTYPQREFD-A---GSTINQIA------------------------- 262 (343)
T ss_dssp EEEECT------TSSEEEEEETTCEEEEEESSCCSSCSEEEE-C---SSCEEEEE-------------------------
T ss_pred EEEECC------CCCEEEEEcCCCeEEEEECCCCcccceeec-C---CCcEEEEE-------------------------
Confidence 999999 699999999999999999953 33333321 1 11122222
Q ss_pred CCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeee-----------cCCCCceeeEeeeeCCceEEEEEEeeceEE
Q 003360 475 KENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKK-----------FHSSSCCWASTFYSGSDVGLMLLFTSGKFE 543 (826)
Q Consensus 475 ~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~-----------~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~ 543 (826)
+++++.++.+++++.+++|++.... ...+.... .. ..-+. .+.-++.+..|+....+|.|+
T Consensus 263 ---~sp~~~~la~~~d~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 263 ---FNPKLQWVAVGTDQGVKIFNLMTQS---KAPVCTIEAEPITKAEGQKGK-NPQCT-SLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp ---ECSSSCEEEEEESSCEEEEESSSCC---SCSEEECCCCSGGGBTTBCCS-CCCEE-EEEECSSSCCEEEEETTSEEE
T ss_pred ---ECCCCCEEEEECCCCEEEEEeCCCC---CCceEEeecCcchhhhhhcCC-CCceE-EEEECCCCCeEEEecCCceEE
Confidence 3455678888889999999986321 00000110 01 11111 111126678889999999999
Q ss_pred EeccCC
Q 003360 544 IRSLPE 549 (826)
Q Consensus 544 i~slP~ 549 (826)
++.+..
T Consensus 335 ~w~~~~ 340 (343)
T 2xzm_R 335 TFSFET 340 (343)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 998653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-26 Score=245.85 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=198.4
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccc-cCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
...+..|...|++++|+++ .+++++ |+.|++|+..... ...+..+ |.+.|.+ |+|++++|++|+.||+|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4457899999999999987 888888 9999999765421 2223233 9999998 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||........ ...+....+..|...|++++|+|++++|++|+.|++|++||++.... . ....
T Consensus 85 w~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~-------------~-~~~~- 146 (330)
T 2hes_X 85 WAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-------------E-YECI- 146 (330)
T ss_dssp EEC----------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC-------------C-CEEE-
T ss_pred EEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC-------------C-eEEE-
Confidence 9984221000 00000122357889999999999999999999999999999953211 0 0111
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..+..|...|++++|+|++.+|++|+.||+|++||...+ .++.. ..+|...|.++.|+|. .++.+|++|
T Consensus 147 --~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~----~~~~~l~s~ 217 (330)
T 2hes_X 147 --SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKT----EGVFRLCSG 217 (330)
T ss_dssp --EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCS----SSSCEEEEE
T ss_pred --EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCC----CCeeEEEEE
Confidence 234457788999999999999999999999999999876 44433 3578999999999982 015689999
Q ss_pred ECCCcEEEEECCCCc--------eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE
Q 003360 416 TKDSSVLVLDSDNGN--------MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL 487 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~--------~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 487 (826)
+.|++|++||+.++. +...+.. .....+.++.+ .+.+.++..
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~----------------------------s~~~~l~s~ 267 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPD--VHKRQVYNVAW----------------------------GFNGLIASV 267 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCS--CCSSCEEEEEE----------------------------CTTSCEEEE
T ss_pred eCCCeEEEEEecCCCccccceeEEeeeccc--ccccceEEEEE----------------------------cCCCEEEEE
Confidence 999999999987542 2222111 11122333322 223346666
Q ss_pred eecCcEEEEeccccccccceeeeee-ecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccC
Q 003360 488 CSEKAACAYSLSHAVQGVKKVLYKK-KFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 488 ~se~~irv~sl~~~~~g~~k~~~k~-~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP 548 (826)
+.|+.|+||++.. +..+.+... ..+....+....+.. ..+..|+....||.|+++.+.
T Consensus 268 ~~dg~v~iw~~~~---~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 268 GADGVLAVYEEVD---GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ETTSCEEEEEEET---TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred eCCCEEEEEEcCC---CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 6677999999852 111122111 111110111111111 145668888899999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=261.12 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=217.2
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
...+..|...|++++|+|+++++++|+ |++|++|+............|...|.+ |+|++++|++|+.|++|++||+.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 355789999999999999999999999 999999986554433333678888888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... ..-.......+.+|...|.++.|+|++ ..|++|+.|++|++||++++.... .+ .. .
T Consensus 139 ~~~~---~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~-----~~--~~---------~ 199 (380)
T 3iz6_a 139 SQAD---RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS-----IF--GS---------E 199 (380)
T ss_dssp CCSS---CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE-----EE--CC---------C
T ss_pred CCcc---ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE-----Ee--ec---------c
Confidence 3220 000011122346788999999999974 579999999999999998553310 00 00 0
Q ss_pred EEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 341 KVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
....|...|.+++|++ ++.+|++|+.||+|++||++. ...+... .+|...|.+++|+| ++.+|++|+.|
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~D 270 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFP------DGQRFGTGSDD 270 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECT------TSSEEEEECSS
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEec------CCCeEEEEcCC
Confidence 0023567899999977 889999999999999999984 3444333 47899999999999 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCC----cceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcE
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPS----RALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAA 493 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~----~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~i 493 (826)
++|++||+++++.+..+..+..... .+.++ .+++++.+++++ .++.|
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------------~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV----------------------------AFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE----------------------------EECSSSSEEEEECTTSCE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEE----------------------------EECCCCCEEEEEECCCCE
Confidence 9999999999998877644332111 01111 244555666665 45689
Q ss_pred EEEeccccccccceeeeee----ecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccc
Q 003360 494 CAYSLSHAVQGVKKVLYKK----KFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSL 552 (826)
Q Consensus 494 rv~sl~~~~~g~~k~~~k~----~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~ 552 (826)
+||++.. .+.+... ..+ ...+. .+..++.+..|+....||.|++|.+..-+.
T Consensus 323 ~vwd~~~-----~~~~~~~~~~~~~h-~~~v~-~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 323 YVWDTLL-----AEMVLNLGTLQNSH-EGRIS-CLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEEETTT-----CCEEEEECCSCSSC-CCCCC-EEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEECCC-----CceEEEEecccCCC-CCceE-EEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 9999862 2222221 111 11111 111126677888899999999999876543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=265.59 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=172.9
Q ss_pred eecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCC-CCCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD 259 (826)
....|+..|+|++|+|. +..|++|+ |+.|++|+......... ..+|.+.|.+ |+| ++++|+||+.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 45678899999999994 56788888 99999997654322211 3679999999 997 689999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+.+..... +.. ...+...+.+++|+|++.+|++|+.||.|++||++....
T Consensus 194 ~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---------------------- 243 (435)
T 4e54_B 194 FKGNILRV---FAS-----SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---------------------- 243 (435)
T ss_dssp TTSCEEEE---EEC-----CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----------------------
T ss_pred ccCCceeE---Eec-----cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----------------------
Confidence 97655322 110 123346788999999999999999999999999874321
Q ss_pred EEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 340 VKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
..+..|...|++++|+|++. ++++|+.||+|+|||+++...........+|..+|++++|+| ++.+|++++.|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp------dg~~l~s~~~D 317 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP------DGARLLTTDQK 317 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT------TSSEEEEEESS
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC------CCCeeEEEcCC
Confidence 22334678899999999876 788999999999999988765533333457889999999998 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCC
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~ 440 (826)
++|++||..++++...+..|..
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCC
T ss_pred CEEEEEECCCCccceEEecccc
Confidence 9999999999988877655543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=255.40 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=173.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEE------eeCCCeEEEec-CCcEEEe
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL------ITGNSFILSSA-DEDYSLL 218 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f------s~~~~~l~~~~-d~~i~~w 218 (826)
..+++++.+|.+.+||...- ......+..|...|+++.| +++++.+++++ |+.+++|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAP----------------EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp CCEEEEETTSCEEEECTTSC----------------SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred ceEEEecCCCeEEEEeCCCC----------------CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 44566677788889987651 1123446789999999955 67899999988 9999999
Q ss_pred ccCCCc--eeecccccCC----ccee------eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCe
Q 003360 219 AKSVPP--LLDFETKLKD----GSQS------HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 219 ~~~~~~--~~~~~~~h~g----~V~~------~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
+..... ...+ ..|.+ .+.+ |++++++|++|+.||.|++||+....... ...|...|
T Consensus 145 d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----------~~~~~~~v 212 (357)
T 3i2n_A 145 DPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-----------ETNIKNGV 212 (357)
T ss_dssp CTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-----------EEECSSCE
T ss_pred eCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-----------ecCCCCce
Confidence 765432 3333 33333 5554 57899999999999999999996555211 12466899
Q ss_pred EEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEE
Q 003360 287 TALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLA 362 (826)
Q Consensus 287 ~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~la 362 (826)
++++|+| ++.+|++|+.||.|++||++...... ... ......|...|++++|+|++. +|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~--~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK--------------GFA--SVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT--------------EEE--EEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc--------------cee--eeccCCCcCCEEEEEECCCCCcEEE
Confidence 9999999 99999999999999999998543211 100 012335788899999999998 899
Q ss_pred EEecCCeEEEEecCCCeeE----------------EeeecccCCCCCeeEEEEeecccCCCCCcEEE-EEECCCcEEEEE
Q 003360 363 VGSDQGYVYLLDTEGPTVL----------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLV-IATKDSSVLVLD 425 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l----------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd 425 (826)
+|+.||.|++||++.+... ........|..+|++++|++ ++.+|+ +++.|+.|++||
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP------DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS------SSTTEEEEEETTSEEEEEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC------CCCeEEEEecCCCcEEEEE
Confidence 9999999999999865321 11122346889999999999 588787 899999999999
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=243.54 Aligned_cols=290 Identities=10% Similarity=0.150 Sum_probs=214.7
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
.++..+..|...|++++| |++.+||+|+.||.|++||+.++..... + ..+..+|..+.|..
T Consensus 9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~------------~----~~~~~~v~~~~~~~- 69 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTV------------V----YTGQGFLNSVCYDS- 69 (313)
T ss_dssp EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEE------------E----EECSSCEEEEEEET-
T ss_pred HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEE------------e----ecCCccEEEEEECC-
Confidence 345666778899999999 6999999999999999999876411100 0 01123455555543
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++ ..+++++.+|.+.+|+..
T Consensus 70 ---~~---------------------------------------------------------~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 70 ---EK---------------------------------------------------------ELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp ---TT---------------------------------------------------------TEEEEEETTSCEEEEETT
T ss_pred ---CC---------------------------------------------------------CEEEEecCCCeEEEEEee
Confidence 11 334555566777777765
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.. . .......+..|...|++++| ++..+++++ |+.+++|+.. .....+ ..|.+.+.+ ++
T Consensus 90 ~~-------~-------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-~~~~~~-~~~~~~v~~~~~~ 151 (313)
T 3odt_A 90 AT-------S-------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-SLVYNL-QAHNASVWDAKVV 151 (313)
T ss_dssp CC-------T-------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-EEEEEE-ECCSSCEEEEEEE
T ss_pred ec-------C-------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-cEEEec-ccCCCceeEEEEc
Confidence 41 0 11122345789999999999 677888888 9999999832 233333 668888888 65
Q ss_pred C-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 K-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+ +++++++|+.||.|++||..... ..+. ..|...|++++|+|++. +++|+.||.|++||++.+..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~-------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-- 217 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDKVI----KTFS-------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-- 217 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTEEE----EEEC-------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE--
T ss_pred cCCCCEEEEEECCCCEEEEecCceE----EEEe-------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh--
Confidence 5 89999999999999999942211 2222 12678999999999998 99999999999999984332
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
. ..+..|.+.|++++|+|++ .+++|+.||.|++||+++++++.... .|..+|.++.|
T Consensus 218 ---------------~----~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~ 274 (313)
T 3odt_A 218 ---------------L----RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDC 274 (313)
T ss_dssp ---------------E----EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEE
T ss_pred ---------------h----hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEE
Confidence 1 3334578889999999999 69999999999999999999885554 57779999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++ ++. +++++.||.|++||..+++.+..
T Consensus 275 ~~------~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 275 MS------NGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp CT------TSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred cc------CCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 99 466 77899999999999998876644
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=250.84 Aligned_cols=240 Identities=12% Similarity=0.151 Sum_probs=183.4
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCc
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
++.++.+|.+.+||..+- .....+..|...|++++|++ ++..+++++ |+.+++|+.....
T Consensus 176 l~s~s~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKG-----------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp EEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred EEEEeCCCCEEEEECCCC-----------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 455566678888887651 12344678999999999995 678889988 9999999654322
Q ss_pred e-----------------------eecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccccccc
Q 003360 225 L-----------------------LDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSL 281 (826)
Q Consensus 225 ~-----------------------~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~ 281 (826)
. .....+|...+.+++++++++++|+.||+|++||+..... +.. +..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~--------~~~ 308 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--LYI--------LSG 308 (464)
T ss_dssp CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EEE--------ECC
T ss_pred ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEE--------ecC
Confidence 1 1223567888888888999999999999999999954442 222 246
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
|...|++++|+|++..|++|+.||.|++||++++.. . ..+..|...|++++|+ +.+|
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----------------~----~~~~~h~~~v~~~~~~--~~~l 365 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------------M----YTLQGHTALVGLLRLS--DKFL 365 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----------------E----EEECCCSSCEEEEEEC--SSEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----------------E----EEEeCCCCcEEEEEEc--CCEE
Confidence 788999999999999999999999999999984322 1 3344577889999998 5689
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
++|+.||+|++||+.++...+.. .+...+..+.|.+ ++.+|++|+ |+.|++||..+|+++..+ ....
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~------~~~~l~~~~-dg~i~iwd~~~g~~~~~~--~~~~ 432 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFYV------SDNILVSGS-ENQFNIYNLRSGKLVHAN--ILKD 432 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE----ECTTCCCEEEEEE------CSSEEEEEE-TTEEEEEETTTCCEEESC--TTTT
T ss_pred EEEeCCCcEEEEECCCCceeeee----cCCCCccEEEEEe------CCCEEEEec-CCeEEEEECCCCcEEehh--hccC
Confidence 99999999999999998877444 3555777888988 588888888 999999999999998763 2222
Q ss_pred CCcceEEEE
Q 003360 442 PSRALFMQI 450 (826)
Q Consensus 442 ~~~~lsi~~ 450 (826)
...+.++.+
T Consensus 433 ~~~v~~v~~ 441 (464)
T 3v7d_B 433 ADQIWSVNF 441 (464)
T ss_dssp CSEEEEEEE
T ss_pred CCcEEEEEe
Confidence 344445444
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=255.88 Aligned_cols=254 Identities=10% Similarity=0.069 Sum_probs=189.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.+++||...... ...+..| ..+....|+++++.+++++ |+.|++|+....
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDG-----------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEET-----------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred CCeEEEEEcCCcEEEEEecccce-----------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 35578888899999999765210 0111233 4455567899999999998 999999987655
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.......+|.+.|.+ |+|++++|++|+.||+|++||+..... ...+..|...|++++|+|++.+|++|
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----------PRTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----------CEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----------ceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 555444689999999 999999999999999999999943331 11234688999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCc--------cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEE
Q 003360 302 DQSGMVRIFKLKYEPHA--------IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL 373 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~--------~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vw 373 (826)
+.||.|++||++++... +...+..+.+.+.... .....+...|++++|+|++.+|++|+.||.|++|
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR-----QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS-----SCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc-----eeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999999865221 1111222222111111 0011234678889999999999999999999999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEECCCcEEEEECCCCce-EEeeeccC
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIATKDSSVLVLDSDNGNM-LSTNLIHP 439 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs~Dg~V~iwd~~tg~~-i~~~~~~~ 439 (826)
|++++..+... ...|...|++++|+| ++. +|++|+.||.|++||+.+++. +..+..+.
T Consensus 275 d~~~~~~~~~~--~~~~~~~v~~~~~~~------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 275 NVFSKEQTIQL--PSKFTCSCNSLTVDG------NNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTTCCEEEEE--CCTTSSCEEEEEECS------SCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred ECCCCceeEEc--ccccCCCceeEEEeC------CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 99999887444 356888999999999 466 999999999999999998854 56654443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=252.37 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=183.3
Q ss_pred CCCEEEEEEeeCC--CeEEEec-CCcEEEeccCCCce----------------------------------------eec
Q 003360 192 DSSITAMKLITGN--SFILSSA-DEDYSLLAKSVPPL----------------------------------------LDF 228 (826)
Q Consensus 192 ~~~Vt~~~fs~~~--~~l~~~~-d~~i~~w~~~~~~~----------------------------------------~~~ 228 (826)
...|++++|+|++ ..+++++ |+.|++|+...... ..+
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 4679999999998 7888888 99999996433111 112
Q ss_pred ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCC
Q 003360 229 ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQS 304 (826)
Q Consensus 229 ~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~d 304 (826)
..+|.+.|.+ |+|++++|++| .||+|++||+. ......+..++ ...+..|...|++++|+|++ .+|++|+.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---PANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---CSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---cccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 3579999988 99999999999 89999999995 33321111122 12345788999999999998 999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~ 383 (826)
|.|++||++.+.... ..+..+....+.... ..+..+.+.|++++|+|+|.+|++|+. |.|+|||++. +.++..
T Consensus 249 g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 249 GTIRLCDMRASALCD-RHSKLFEEPEDPSNR----SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp SCEEEEETTTCSSSC-TTCEEECCC-----C----CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred CeEEEEECcCCcccc-ceeeEeccCCCcccc----ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 999999998654310 001111000000000 001112348999999999999999999 9999999987 666644
Q ss_pred eecccCCCC---------------CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC--CCcce
Q 003360 384 KHIASDISS---------------GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK--PSRAL 446 (826)
Q Consensus 384 ~~~~~~~~~---------------~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~--~~~~l 446 (826)
.. .|.. .+..++|+| ++.+|++|+.||.|++||..+++.+... .+... +....
T Consensus 323 ~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~------~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~ 392 (447)
T 3dw8_B 323 YQ---VHEYLRSKLCSLYENDCIFDKFECCWNG------SDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVL 392 (447)
T ss_dssp EE---SCGGGTTTHHHHHHTSGGGCCCCEEECT------TSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBC
T ss_pred ee---ccccccccccccccccccccceEEEECC------CCCEEEEeccCCEEEEEEcCCCcceeee-eccccccccccc
Confidence 43 2321 133489998 6999999999999999999998876332 22211 00000
Q ss_pred EE-EEecCCCCcccCccccccc--cc-cCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 447 FM-QILNGQDGLARGANLSNVA--GM-NKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 447 si-~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.. ..... . .......... .. .....+ .|+|++.++++++.+.+++|+-.
T Consensus 393 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 393 KPRKVCAS-G--KRKKDEISVDSLDFNKKILHT-AWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CCCCEECS-S--CCCTTCEEGGGCCTTSCCCEE-EECSSSSEEEEECSSCEEEEECC
T ss_pred CCcccccc-C--CcccccccccccccCCceeEE-EECCCCCEEEEEecceeeeeccc
Confidence 00 00000 0 0000000000 00 111112 57888899999999999999753
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=247.96 Aligned_cols=213 Identities=10% Similarity=0.083 Sum_probs=166.3
Q ss_pred cccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
..|...|++++|+++ +..+++++ |+.|++|+..... .......|.+.|.+ |+|+ +++|++|+.||+|++||
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 467788999999977 89999998 9999999765543 22223668899988 9999 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-------------TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-------------~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+......... .+..|...|++++|+| ++.+|++|+.||.|++||++.+....
T Consensus 132 ~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------- 196 (379)
T 3jrp_A 132 FKENGTTSPI--------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------- 196 (379)
T ss_dssp CCTTSCCCEE--------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-------
T ss_pred cCCCCceeeE--------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-------
Confidence 9443211111 1245778999999999 69999999999999999998543210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeE--EeeecccCCCCCeeEEEEee
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l--~~~~~~~~~~~~V~sl~f~~ 401 (826)
... .....|...|++++|+|+ +.+|++|+.||.|++||++.+... ........+...|++++|+|
T Consensus 197 -------~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 197 -------VLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266 (379)
T ss_dssp -------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred -------eeE---EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC
Confidence 110 234456788999999999 899999999999999999887421 11222235788999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
++.+|++++.||.|++|+..++...
T Consensus 267 ------~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 267 ------SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp ------SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ------CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 5999999999999999999865433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=254.16 Aligned_cols=304 Identities=11% Similarity=0.045 Sum_probs=202.9
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
.+..|++++| +|+|++||+|+.||.|++||+.++.. ..+. ....+..+|..+.|.. ++
T Consensus 10 ~~~~v~~~~~-s~~g~~l~~~~~d~~i~iw~~~~~~~----------~~~~----~~~~h~~~v~~~~~s~----~~--- 67 (377)
T 3dwl_C 10 LPKPSYEHAF-NSQRTEFVTTTATNQVELYEQDGNGW----------KHAR----TFSDHDKIVTCVDWAP----KS--- 67 (377)
T ss_dssp CSSCCSCCEE-CSSSSEEECCCSSSCBCEEEEETTEE----------EECC----CBCCCSSCEEEEEECT----TT---
T ss_pred CCCcEEEEEE-CCCCCEEEEecCCCEEEEEEccCCce----------EEEE----EEecCCceEEEEEEeC----CC---
Confidence 4668999999 57999999999999999999886410 0000 1112445666666643 11
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
..++.++.+|.+.+||...-.
T Consensus 68 ------------------------------------------------------~~l~s~s~d~~v~vwd~~~~~----- 88 (377)
T 3dwl_C 68 ------------------------------------------------------NRIVTCSQDRNAYVYEKRPDG----- 88 (377)
T ss_dssp ------------------------------------------------------CCEEEEETTSSEEEC-----------
T ss_pred ------------------------------------------------------CEEEEEeCCCeEEEEEcCCCC-----
Confidence 223455556778888876511
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCCC
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~~ 244 (826)
.......+..|...|++++|+|+++.+++++ |+.|++|+..... ...+..+|.+.|.+ |+|+++
T Consensus 89 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 89 ---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred ---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 0112344567999999999999999999988 9999999765433 33443349999999 999999
Q ss_pred EEEEEECCCcEEEEeCCCCceeeee-------ec-ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLIL-------SL-KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~-------~l-~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+|++|+.||+|++||+......... .+ ..+....+ .|...|++++|+|++++|++|+.||.|++||++.+.
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999998422100000 00 00011223 678899999999999999999999999999998654
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee----------------
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV---------------- 380 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~---------------- 380 (826)
... ... .....|..+|++++|+|++.+|++|+.++.+ +|+......
T Consensus 239 ~~~--------------~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 239 QPP--------------RAL---ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp SCE--------------EEC---CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred Ccc--------------eee---EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 310 000 2234567789999999999999999887766 776642210
Q ss_pred ----------------------EEe-----------eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 381 ----------------------LYQ-----------KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 381 ----------------------l~~-----------~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.+. ......|...|+++.+.+. .+.+...|++|+.||.|++||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~--~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG--TPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEE--ETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCC--CCCceEEEEeecCCCcEEEecC
Confidence 000 0011238889999997663 0001127999999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=237.82 Aligned_cols=213 Identities=9% Similarity=0.141 Sum_probs=166.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC---CceeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV---PPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~---~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
.+..|...|++++|+++++.+++++ |++|++|+... .....+ .+|.+.|.+ |++ ++++|+||+.||+|+||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578999999999999999999999 99999997542 233344 789999998 765 48999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.......+. .+..|...|++++|+|+ +.+|++|+.||+|++||++..... ..
T Consensus 83 d~~~~~~~~~~--------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------------~~-- 138 (297)
T 2pm7_B 83 KEENGRWSQIA--------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------------SP-- 138 (297)
T ss_dssp EBSSSCBCCCE--------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------------CC--
T ss_pred EcCCCceEEEE--------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------------ee--
Confidence 99543211111 12467889999999998 889999999999999999854210 01
Q ss_pred EEEEEEeeccCCeEEEEEccC-------------CCEEEEEecCCeEEEEecCCCeeEE-eeecccCCCCCeeEEEEeec
Q 003360 337 IHSVKVMKINGSIISLNMNRN-------------SQHLAVGSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~-------------g~~lasGs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~sl~f~~~ 402 (826)
.....|...|++++|+|+ +.+||+|+.||+|+|||++++...+ ......+|...|.+++|+|.
T Consensus 139 ---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 139 ---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp ---EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred ---eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 334456778999999997 5799999999999999998765211 11223579999999999993
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
. ..+.+|++++.|++|++||..++.
T Consensus 216 ~---~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 216 V---LLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp C---SSSEEEEEEETTSCEEEEEESSTT
T ss_pred C---CCceEEEEEECCCcEEEEEeCCCC
Confidence 0 014899999999999999988643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=244.51 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=194.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+..|..+|++++|+|+++++++++ |+.|++|+.... ....+ .+|.+.|.+ |+|++++|++|+.||+|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456899999999999999999997 999999976654 33333 679999988 99999999999999999999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
......... +..|...|++++|+|++.+|++|+.||.|++||++...... ... ..
T Consensus 83 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--------------~~~---~~ 137 (372)
T 1k8k_C 83 GRTWKPTLV--------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--------------VCK---HI 137 (372)
T ss_dssp TTEEEEEEE--------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--------------EEE---EE
T ss_pred CCeeeeeEE--------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce--------------eee---ee
Confidence 444222111 23477899999999999999999999999999998543200 000 12
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC------------------CCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE------------------GPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~------------------~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
...|...|++++|+|++.+|++|+.||.|++||++ .+.++... ..|...|.++.|++
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-- 212 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSA-- 212 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECS--
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECC--
Confidence 23457789999999999999999999999999954 45666333 37888999999999
Q ss_pred cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
++.+|++++.|+.|++||..+++.+..+..+. ..+.++.+ .+++.
T Consensus 213 ----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~----------------------------~~~~~ 257 (372)
T 1k8k_C 213 ----NGSRVAWVSHDSTVCLADADKKMAVATLASET---LPLLAVTF----------------------------ITESS 257 (372)
T ss_dssp ----SSSEEEEEETTTEEEEEEGGGTTEEEEEECSS---CCEEEEEE----------------------------EETTE
T ss_pred ----CCCEEEEEeCCCEEEEEECCCCceeEEEccCC---CCeEEEEE----------------------------ecCCC
Confidence 58999999999999999999999988875543 22333333 23446
Q ss_pred EEEEeecCcEEEEeccc
Q 003360 484 FVLLCSEKAACAYSLSH 500 (826)
Q Consensus 484 ~vv~~se~~irv~sl~~ 500 (826)
+++++.++.+++|++..
T Consensus 258 ~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 LVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTSSCEEEEEET
T ss_pred EEEEEeCCeEEEEEccC
Confidence 78888888999999974
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=246.77 Aligned_cols=231 Identities=10% Similarity=0.107 Sum_probs=176.0
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-Cc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~ 224 (826)
.+++++.+|.+.+||.... .....+..|...|++++| ++..+++++ |+.|++|+... ..
T Consensus 148 ~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQ-----------------TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp EEEEEETTSCEEEEETTTC-----------------CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC
T ss_pred EEEEECCCCeEEEEECcCC-----------------eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc
Confidence 3455556677888876541 123446789999999999 567888888 99999997652 22
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasg 301 (826)
......+|.+.|.+ |+|++++|++|+.||+|++||+..... +.. +..|...|++++|+|++ .++++|
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~--------~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFT--------KTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEE--------ECCCSSCCCEEEECTTSTTEEEEE
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEE--------ecCCcceEEEEEECCCCCCEEEEe
Confidence 22223679999998 999999999999999999999954432 122 23577899999999976 566776
Q ss_pred e--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE--EecCCeEEEEecCC
Q 003360 302 D--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV--GSDQGYVYLLDTEG 377 (826)
Q Consensus 302 s--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las--Gs~dG~V~vwD~~~ 377 (826)
+ .||.|++||+.++.. +....+...|++++|+|++..+++ |+.||.|+|||+.+
T Consensus 279 ~gs~d~~i~i~d~~~~~~----------------------~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR----------------------VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCTTTCEEEEEETTTCCE----------------------EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCE----------------------EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 5 799999999984432 344456778999999999999999 55899999999998
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+........ .+|...|.+++|++ ++.+|++++.||.|++|++.+++.+...
T Consensus 337 ~~~~~~~~~-~~h~~~v~~~~~s~------dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 337 SGLTKQVDI-PAHDTRVLYSALSP------DGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TEEEEEEEE-ECCSSCCCEEEECT------TSSEEEEECTTSEEEEEECCC-------
T ss_pred ccceeEEEe-cCCCCCEEEEEECC------CCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 776644332 47889999999999 6999999999999999999998877653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=250.00 Aligned_cols=206 Identities=12% Similarity=0.157 Sum_probs=157.7
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCC--CCEEEEEECCCcEEEE
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFW 258 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriW 258 (826)
..|...|++++|++ ++..+++++ |++|++|+..... ...+ .+|.+.|.+ |+|+ +.+|++|+.||+|++|
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence 56888899999986 488999988 9999999765432 2223 579999988 9987 7899999999999999
Q ss_pred eCCCC-ceeeeeecccccccccccCCCCeEEEEEeCC-----------------CCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 259 DVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-----------------SRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 259 D~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-----------------~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|+... .... ...+..|...|.+++|+|+ +.+|++|+.|++|++||++.....
T Consensus 133 d~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-- 202 (316)
T 3bg1_A 133 TYTGEGQWEV--------KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-- 202 (316)
T ss_dssp EECSSSCEEE--------CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE--
T ss_pred ecCCCCCcce--------eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc--
Confidence 99543 2111 1112467789999999997 468999999999999999632110
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----CEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCee
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIV 395 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~ 395 (826)
... ..+..|...|++++|+|++ .+||+|+.||+|+|||+..... .........|...|.
T Consensus 203 -------------~~~---~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 203 -------------KEE---QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVW 266 (316)
T ss_dssp -------------EEE---ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEE
T ss_pred -------------cee---eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEE
Confidence 000 2234567889999999986 7899999999999999976310 000111135678999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+++|+| ++.+|++++.|++|++|+..
T Consensus 267 ~v~~sp------~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSI------TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECT------TTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcC------CCCEEEEEcCCCeEEEEEEC
Confidence 999999 59999999999999999976
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=267.56 Aligned_cols=289 Identities=15% Similarity=0.143 Sum_probs=214.6
Q ss_pred eeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCc-----eeecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 186 LKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPP-----LLDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~-----~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
-.+..|...|++++|++++ ..+++++ |++|++|+..... ......+|.+.|.+ |+|++++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3478999999999999875 6788888 9999999654211 11123679999998 999999999999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|||+..... +. .+..|...|++++|+|++++|++|+.|++|++||...... .. ....
T Consensus 456 vwd~~~~~~--~~--------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~------~~--~~~~----- 512 (694)
T 3dm0_A 456 LWDLAAGVS--TR--------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK------YT--ISEG----- 512 (694)
T ss_dssp EEETTTTEE--EE--------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE------EE--ECSS-----
T ss_pred EEECCCCcc--ee--------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc------ee--eccC-----
Confidence 999954442 11 2347889999999999999999999999999999753210 00 0000
Q ss_pred EEEEEEeeccCCeEEEEEccCC--CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g--~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
...|...|++++|+|++ ..+++|+.||+|+|||++++++.... .+|...|++++|+| ++.+|++
T Consensus 513 -----~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~sp------dg~~l~s 578 (694)
T 3dm0_A 513 -----GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSP------DGSLCAS 578 (694)
T ss_dssp -----TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT------TSSEEEE
T ss_pred -----CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeC------CCCEEEE
Confidence 01356679999999987 57999999999999999998887544 47899999999999 6999999
Q ss_pred EECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEE
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAAC 494 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ir 494 (826)
|+.|++|++||+.+++.+..+.. ...+.++. +++++.++++++++.|+
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~~----~~~v~~~~----------------------------~sp~~~~l~~~~~~~i~ 626 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLEA----NSVIHALC----------------------------FSPNRYWLCAATEHGIK 626 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCBC----SSCEEEEE----------------------------ECSSSSEEEEEETTEEE
T ss_pred EeCCCeEEEEECCCCceEEEecC----CCcEEEEE----------------------------EcCCCcEEEEEcCCCEE
Confidence 99999999999999988766422 12222222 34456788888999999
Q ss_pred EEeccccccccceeeeeeecCC----------------CCce-eeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 495 AYSLSHAVQGVKKVLYKKKFHS----------------SSCC-WASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 495 v~sl~~~~~g~~k~~~k~~~~~----------------~~c~-~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
||++.. ...+...+... .... ..++.-++.+..|+....||.|++|.+.
T Consensus 627 iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 627 IWDLES-----KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTT-----TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCC-----CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999973 22222221110 0000 1122223778889999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-24 Score=232.65 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=186.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++.. +|.+.+||...- . . ...........|...|++++|+|+++.+++++ |+.+++|+.....
T Consensus 64 ~~l~~~~-dg~i~iw~~~~~-------~---~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 64 RHVYTGG-KGCVKVWDISHP-------G---N--KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SEEEEEC-BSEEEEEETTST-------T---C--CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred cEEEEcC-CCeEEEEECCCC-------C---c--eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 4555555 999999998651 0 0 01112222337889999999999999999988 9999999765543
Q ss_pred --eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 225 --LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 225 --~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.......|.+.+.+ |+|++++|++|+.||.|++||+..... +.. +..|...|++++|+|++.+|++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~--------~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQ--------FQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eee--------eecccCceEEEEECCCCCEEEE
Confidence 22223568888888 999999999999999999999955442 122 2357789999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.||.|++||++.... +....+...|.+++|+|++.++++|+.||.|++||++++..
T Consensus 201 ~~~dg~i~~~d~~~~~~----------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQ----------------------LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EETTSEEEEEETTTTEE----------------------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred EecCCcEEEEECCCCce----------------------EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 99999999999984322 33345678899999999999999999999999999998876
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.. ...|..+|.++.|++ ++.+|++++.||.|++||..+++.+..
T Consensus 259 ~~----~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 259 YQ----LHLHESCVLSLKFAY------CGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EE----ECCCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EE----EcCCccceeEEEECC------CCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 51 246888999999999 599999999999999999999987754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=244.81 Aligned_cols=227 Identities=14% Similarity=0.180 Sum_probs=178.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.++.++.+|.+.+||...- .....+..|...|+++.++ +..+++++ |+.+++|+......
T Consensus 171 ~l~s~~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETG-----------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp EEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE
T ss_pred EEEEEeCCCeEEEEECCcC-----------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE
Confidence 3456666788888887651 1234567899999999985 66788888 99999998765444
Q ss_pred eecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 226 LDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 226 ~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.....+|.+.|.+...+++++++|+.||+|++||+..... +.. +..|...|++++| ++..+++|+.||
T Consensus 232 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~--------~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHT--------LQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE--EEE--------ECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcE--eEE--------ecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 4333678999988333889999999999999999944432 222 2367789999999 788999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.|++||++++... .....+...+.++.++ +.++++|+.||.|++||+++++++....
T Consensus 300 ~i~i~d~~~~~~~---------------------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 300 SIRVWDVETGNCI---------------------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp CEEEEETTTCCEE---------------------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred eEEEEECCCCCEE---------------------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 9999999854321 2333456778888875 5689999999999999999999887666
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
....|..+|+++.|+ +.+|++|+.||.|++||..+|+.+..+
T Consensus 357 ~~~~~~~~v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp STTSCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCEEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 545688999999995 578999999999999999999988876
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=240.94 Aligned_cols=319 Identities=10% Similarity=0.119 Sum_probs=211.3
Q ss_pred cccccccccceEEEecCC-CCCEEEEEEecCcEEEEeCCCcccccccccccccccccccc-CCCCCCcCCeEEEEEeeeC
Q 003360 7 QSVYHETKQVTSACWACP-IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLN-LGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p-~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pI~~l~W~~~~ 84 (826)
.....|...|++++| +| +|.+||+|+.||.|++||+.++......... ...... .....+..+|..+.|...
T Consensus 37 ~~~~~h~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~- 110 (408)
T 4a11_B 37 DVERIHGGGINTLDI-EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH- 110 (408)
T ss_dssp EECCCCSSCEEEEEE-CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT-
T ss_pred eeeeccCCcEEEEEE-ecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC-
Confidence 344457889999999 57 9999999999999999999986222111000 000000 001123344555444320
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
+...++.++.+|.+.+||...
T Consensus 111 -----------------------------------------------------------~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 111 -----------------------------------------------------------DTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp -----------------------------------------------------------CTTCEEEEETTSEEEEEETTT
T ss_pred -----------------------------------------------------------CCcEEEEEeCCCeEEEeeCCC
Confidence 112345566677888888765
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC---eEEEec-CCcEEEeccCCCceeecccccCCccee--
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS---FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~---~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-- 238 (826)
. .......+...+.++.+++.+. .+++++ ++.+++|+............|.+.|.+
T Consensus 132 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 132 L------------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp T------------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred C------------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 1 1111223677899999988554 788887 999999976654433333679999988
Q ss_pred eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeeccc-------ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 239 HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQ-------QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 239 ~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~-------~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
|+|+++ ++++|+.||.|++||+..... .+..+.. ........|...|++++|+|++.+|++|+.||.|++|
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 999988 699999999999999933221 1111210 0111224677899999999999999999999999999
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
|++.+....... +. . .......+........+..+++++.||.|++||+.+++++... .+|
T Consensus 273 d~~~~~~~~~~~---------~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~ 333 (408)
T 4a11_B 273 NSSNGENTLVNY---------GK------V-CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---KGH 333 (408)
T ss_dssp ETTTCCBCCCCC---------CC------C-CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---CCC
T ss_pred ECCCCccceecc---------cc------c-cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---ccC
Confidence 998654321000 00 0 0000111222223334456778888999999999999988555 378
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
...|++++|++ ++.+|++++.||.|++||+.+++.+..
T Consensus 334 ~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 334 YKTVDCCVFQS------NFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SSCEEEEEEET------TTTEEEEEETTSCEEEEEECC------
T ss_pred CCeEEEEEEcC------CCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 89999999999 589999999999999999998877654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-25 Score=242.25 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=210.4
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeec-c-cccCCccee--eCC-CCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDF-E-TKLKDGSQS--HSK-VKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~-~-~~h~g~V~~--~s~-~~~~l~Tgs~DGtVri 257 (826)
...+..|...|++++|++++ +.+++++ |+.|++|+......... . .+|.+.|.+ |+| ++++|++|+.||+|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 44578899999999999999 8999988 99999997664333332 2 369999999 999 7899999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||+.+..... +.. ...|...|++++|+|++.+|++|+.||.|++||++.. . .
T Consensus 146 wd~~~~~~~~---~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~----------------~--- 197 (383)
T 3ei3_B 146 RDFSGSVIQV---FAK-----TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-E----------------I--- 197 (383)
T ss_dssp EETTSCEEEE---EEC-----CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-E----------------E---
T ss_pred EECCCCceEE---Eec-----cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-E----------------E---
Confidence 9997654322 221 1234578999999999999999999999999998521 1 1
Q ss_pred EEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCC----CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEG----PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~----~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
..+..|...|++++|+|++. ++++|+.||.|++||+++ +.++... +|...|++++|+|. ++.+|
T Consensus 198 --~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~-----~~~~l 266 (383)
T 3ei3_B 198 --FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPT-----DSTKL 266 (383)
T ss_dssp --EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTT-----TSCEE
T ss_pred --EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCC-----CCCEE
Confidence 33445788899999999999 999999999999999997 5555333 57889999999983 48999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCC---cceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPS---RALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS 489 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~---~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s 489 (826)
++++.|+.|++||+.+++.+..+..|..... ..+...+... ... .. ..+.+++.+ ..+.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~-~~~s~dg~~-s~s~ 328 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM-YDL---------------IV-AGRYPDDQL-LLND 328 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS-SSE---------------EE-EECBCCTTT-CTTC
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC-CCc---------------eE-EEecCCccc-ccCC
Confidence 9999999999999999887766654432210 0010000000 000 00 011222233 3345
Q ss_pred cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 490 EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 490 e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
++.|+||++. ..+.+..............+.-++.+..|+.. .+|.|++|.+.
T Consensus 329 d~~i~iwd~~-----~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 329 KRTIDIYDAN-----SGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWNRE 381 (383)
T ss_dssp CCCEEEEETT-----TCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-ETTEEEEEECC
T ss_pred CCeEEEEecC-----CCceeeeecCCCCCceEEEEEEecCccEEEEe-cCCcEEEEecC
Confidence 7799999997 33344443321001111111112566677666 59999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-24 Score=261.06 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=194.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.+.+||... ......+..|..+|++++|+|+++.+++++ |+.|++|+....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~-----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYET-----------------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp SSEEEEEETTSEEEEEETTT-----------------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCC-----------------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 35677888899999999755 113345678999999999999999999998 999999986554
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeC-CCCEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLV 299 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~La 299 (826)
.......+|.+.|.+ |+|++++|++|+.||+|++||+... .. .. .+..|...|++++|+| ++..|+
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~--------~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQ--------TFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE--EE--------EEECCSSCEEEEEEETTEEEEEE
T ss_pred cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE--EE--------EEcCCCCcEEEEEEEcCCCCEEE
Confidence 443333679999998 9999999999999999999999443 31 11 1246778999999999 889999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCC
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~ 377 (826)
+|+.||.|++||+...... . .....+...|.+++|+| ++.++++|+.||.|++||+.+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~----------------~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPN----------------F----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEETTSEEEEEETTCSSCS----------------E----EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred EEeCCCeEEEEECCCCcce----------------e----EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999999999744321 0 11222347799999999 999999999999999999999
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+.++.... .|...|+++.|+| ++.+|++++.||.|++||..+++.+..+..+
T Consensus 218 ~~~~~~~~---~~~~~v~~~~~~~------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 218 KSCVATLE---GHMSNVSFAVFHP------TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TEEEEEEE---CCSSCEEEEEECS------SSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CcEEEEEc---CCCCCEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 98875553 6788999999999 5899999999999999999999988876443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=236.06 Aligned_cols=220 Identities=16% Similarity=0.085 Sum_probs=164.7
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCC----------ceeecccccCCccee--eCCC--CCEEEEEEC
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVP----------PLLDFETKLKDGSQS--HSKV--KNLFITGHS 251 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~----------~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~ 251 (826)
..|...|++++|++ ++..+++++ |+.|++|+.... ....+ ..|.+.|.+ |+|+ +++|++|+.
T Consensus 54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecC
Confidence 56778899999999 699999988 999999976542 12223 578999988 9999 999999999
Q ss_pred CCcEEEEeCCCCceeeeeecccc---cccccccCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQ---SEKDFSLSGIPLTALYYDGT---SRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~---~~~~~~~h~~~V~~l~fsp~---~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
||+|++||+..........+... .......|...|.+++|+|+ +..|++++.++.+.+|+...+..
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 204 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------- 204 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--------
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--------
Confidence 99999999843321110111000 00011246689999999997 89999999999997777663221
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----CEEEEEecCCeEEEEecCCCeeE--------------------
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPTVL-------------------- 381 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----~~lasGs~dG~V~vwD~~~~~~l-------------------- 381 (826)
... .....|...|++++|+|++ .+|++|+.||.|++||++.+...
T Consensus 205 --------~~~---~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
T 3f3f_A 205 --------HVA---AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD 273 (351)
T ss_dssp --------EEE---EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------
T ss_pred --------eee---eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc
Confidence 011 3334567889999999998 79999999999999999875210
Q ss_pred -----------------------EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 382 -----------------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 382 -----------------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.......+|...|++++|++ ++.+|++|+.||.|++|+..+++.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL------TGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp -----------------CCSEEEEEEEEECTTSSCEEEEEECS------SSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccccccccceeeeecccccccEEEEEecccccEEEEEEcC------CCCEEEEecCCCcEEEEecCcCcchhh
Confidence 01122346889999999999 589999999999999999998876544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-23 Score=229.73 Aligned_cols=305 Identities=13% Similarity=0.154 Sum_probs=221.1
Q ss_pred CccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 181 PKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 181 ~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
....+..+..|...|++++|+|+++++++++ |+.|++|+...........+|.+.|.+ |+|++++|++|+.||+|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3445677899999999999999999999988 999999976554444333679999988 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEeCCCCCccccceEEEeecCCC
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIFKLKYEPHAIENSFLSFTGSKKG 332 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iwd~~~~~~~~~~~~~~i~~s~~~ 332 (826)
||+..... +..+. +...|.+++|+|++.+|++++.+ |.|++||+....... .+.. . ...
T Consensus 101 wd~~~~~~--~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~--~-~~~ 164 (369)
T 3zwl_B 101 WDVSNGQC--VATWK---------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH--ELTK--V-SEE 164 (369)
T ss_dssp EETTTCCE--EEEEE---------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC--CEEE--E-CSS
T ss_pred EECCCCcE--EEEee---------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce--eecc--c-ccc
Confidence 99954432 11121 55789999999999999999999 999999998654321 0000 0 011
Q ss_pred CeEEEEEEEEeeccC--CeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 333 NSHIIHSVKVMKING--SIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 333 ~~~~~~~~~~~~~~~--~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.. .....+.+ .|++++|+|++.+|++|+.||.|++||+++ ...+... ..|...|.+++|++ ++
T Consensus 165 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~------~~ 230 (369)
T 3zwl_B 165 PI-----HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSP------DL 230 (369)
T ss_dssp CS-----EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECT------TS
T ss_pred ee-----eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECC------CC
Confidence 11 22233344 899999999999999999999999999998 5666444 36788999999999 59
Q ss_pred cEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee
Q 003360 410 NFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS 489 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s 489 (826)
.+|++++.|+.|++||..+++.+..+. ....+..+.+ .+++.++++++
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~----------------------------~~~~~~l~~~~ 278 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVI----------------------------TPLKEFIILGG 278 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEE----------------------------CSSSSEEEEEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEe----------------------------cCCCceEEEee
Confidence 999999999999999999999888764 1122222222 23344444444
Q ss_pred c-C--------------cEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccc
Q 003360 490 E-K--------------AACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 490 e-~--------------~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
. + .+++|++. ..+.+.....+ ...+. .+..++.+..|+....+|.|++|.+.......
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~-~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKI-----FEEEIGRVQGH-FGPLN-TVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp CCC-------------CEEEEEETT-----TCCEEEEEECC-SSCEE-EEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred cCCCceEEEEecCCCcceeEEEecC-----CCcchhheecc-cCcEE-EEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 3 3 68999886 33333333322 11111 11112567788889999999999987654433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=233.64 Aligned_cols=287 Identities=12% Similarity=0.110 Sum_probs=213.7
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCc------eeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPP------LLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~------~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
..+|.+|...|++++|+|+ +++|++|+ |++|++|+..... ... ..+|.+.|.+ |+|++++|++|+.||.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~-l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-LRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE-EeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3458899999999999998 57889988 9999999644321 222 3679999999 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|++|+........ . ...+...+..+.+++++..|++|+.|+.+++||......
T Consensus 110 i~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~----------------- 162 (340)
T 4aow_A 110 LRLWDLTTGTTTR--R--------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK----------------- 162 (340)
T ss_dssp EEEEETTTTEEEE--E--------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----------------
T ss_pred ceEEeecccceee--e--------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----------------
Confidence 9999995554211 1 123556888999999999999999999999999873211
Q ss_pred EEEEEEEEeeccCCeEEEEEccCC--CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g--~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. .....+...|.+++|++++ .++++|+.|+.|++||+++++++... .+|..+|++++|+| ++.+|
T Consensus 163 ~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~------~~~~l 230 (340)
T 4aow_A 163 YT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSP------DGSLC 230 (340)
T ss_dssp EE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECT------TSSEE
T ss_pred EE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECC------CCCEE
Confidence 10 2233456789999998764 57889999999999999999888554 47889999999998 69999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
++|+.|++|++||..+++.+..+..+. .+.++. +.+++.+++.+.++.
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~----~v~~~~----------------------------~~~~~~~~~~~~d~~ 278 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALC----------------------------FSPNRYWLCAATGPS 278 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECSS----CEEEEE----------------------------ECSSSSEEEEEETTE
T ss_pred EEEeCCCeEEEEEeccCceeeeecCCc----eEEeee----------------------------cCCCCceeeccCCCE
Confidence 999999999999999998887764321 222222 233456888888999
Q ss_pred EEEEeccccccccceeeeeee---------cCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKK---------FHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~---------~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
|+||++.. ...+...+ .. ...+ .++.-++.+..|+....||.|+||.+...
T Consensus 279 i~iwd~~~-----~~~~~~~~~~~~~~~~~~h-~~~v-~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 279 IKIWDLEG-----KIIVDELKQEVISTSSKAE-PPQC-TSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTT-----TEEEEEECCC-------CC-CCCE-EEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EEEEECCC-----CeEEEeccccceeeeccCC-CCCE-EEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999873 22222111 01 1111 11111266778899999999999987543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=251.51 Aligned_cols=329 Identities=12% Similarity=0.128 Sum_probs=209.4
Q ss_pred cccccc-ccccccceEEEecCC-CCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 4 NVLQSV-YHETKQVTSACWACP-IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 4 ~~~~~~-~~~~~~i~slcW~~p-~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
.+++++ ..|...|++++| +| +|.+||+|+.||.|++||+.+..... ...+...+ .+..+|..+.|+
T Consensus 53 ~~~~~~~~~h~~~V~~~~~-s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-----~h~~~v~~~~~~ 120 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAV-SPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-----DCSSTVTQITMI 120 (437)
T ss_dssp CEEEEECTTTTSCEEEEEE-ECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-----ECSSCEEEEEEC
T ss_pred eEEeeeccCCCCceEEEEE-CCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-----cCCCCEEEEEEe
Confidence 344555 556789999999 57 99999999999999999987621000 00001111 245578888776
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ++.++++|+.+. .+.+|.++.. ..+.+.. .. .+. .+
T Consensus 121 ~----~~~~l~s~s~dg----~i~vwd~~~~-----------~~~~~~~-------------------~~--~~~-~i-- 157 (437)
T 3gre_A 121 P----NFDAFAVSSKDG----QIIVLKVNHY-----------QQESEVK-------------------FL--NCE-CI-- 157 (437)
T ss_dssp T----TSSEEEEEETTS----EEEEEEEEEE-----------EETTEEE-------------------EE--EEE-EE--
T ss_pred C----CCCEEEEEeCCC----EEEEEEeccc-----------cCCceee-------------------cc--ccc-ee--
Confidence 4 344455554422 2222222100 0000000 00 000 00
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecc--cCCCEEEEE--EeeCCCeEEEec-CCcEEEeccCCCce-eeccc-ccCC
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMK--LITGNSFILSSA-DEDYSLLAKSVPPL-LDFET-KLKD 234 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~--fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~-~h~g 234 (826)
..+.+.. +...+.++. +++++..+++++ |+.|++|+...... ..+.. .|.+
T Consensus 158 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 158 ----------------------RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp ----------------------EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred ----------------------EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 0111112 667788888 457889999988 99999998755433 33322 2889
Q ss_pred ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC----CCCEEEEEeCCCcEE
Q 003360 235 GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG----TSRVLVSGDQSGMVR 308 (826)
Q Consensus 235 ~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp----~~~~Lasgs~dg~V~ 308 (826)
.|.+ |+|++++|++|+.||+|++||+..... +..+. ..|..+|++++|+| ++.+|++|+.||.|+
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVL--IRSWS-------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEE--EEEEB-------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE--EEEEe-------cCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 9998 999999999999999999999955442 22222 13557899996665 577999999999999
Q ss_pred EEEeCCCCCc-----cccceEEEeecCCCCeEEEEEEEEe--eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 309 IFKLKYEPHA-----IENSFLSFTGSKKGNSHIIHSVKVM--KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 309 iwd~~~~~~~-----~~~~~~~i~~s~~~~~~~~~~~~~~--~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+||++++... +...+..+.+++++... ....+. .+...|++++|+ ++.+|++|+.||.|++||+.+++++
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL--EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSG--GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEcCCCcEEEEEEcCCCCCccceeccccccc--ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 9999865321 11111111222222110 000111 256679999999 7789999999999999999988766
Q ss_pred Eeeec----------------------------------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 382 YQKHI----------------------------------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 382 ~~~~~----------------------------------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
..... ...|...|++++|.+. .++.+|++|+.||.|+||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~----~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV----DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES----SSSEEEEEEETTSCEEEEC
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc----CCceEEEEEcCCceEEEeC
Confidence 43331 1127889999999983 1267999999999999995
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-24 Score=228.91 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=168.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ce
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PL 225 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~ 225 (826)
++.++.+|.+.+||..+- .....+..|...+.++ +.++..+++++ ++.+++|..... ..
T Consensus 82 l~sgs~Dg~v~iw~~~~~-----------------~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~ 142 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQ-----------------KRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHH 142 (318)
T ss_dssp EEEEETTSEEEEEETTTT-----------------EEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred EEEEECCCcEEEeecCCc-----------------eeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCcee
Confidence 345555667777776551 1233456777777664 55678888888 889998854432 22
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE---EEE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV---LVS 300 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~---Las 300 (826)
.....+|...+.. +++++++|++|+.||+|++||+..... ..........+...|.+++++|++.. +++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT------BSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc------cccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 2223678888888 999999999999999999999943321 00001112346689999999997653 346
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe--cCCeEEEEecCCC
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS--DQGYVYLLDTEGP 378 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs--~dG~V~vwD~~~~ 378 (826)
|+.+++|++||...... .....+...|..+.|++++..+++++ .||.|+|||++++
T Consensus 217 ~~~~~~i~lwd~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGAC----------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CTTTCEEEEEETTTCCE----------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCCEEEEEecccccc----------------------cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 77899999999874332 33445677899999999999887755 8999999999999
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+++.++ .+|..+|++++|+| |+.+|++|+.|++|+|||+...
T Consensus 275 ~~~~~l---~gH~~~V~~l~~sp------dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 AKVAEL---KGHTSRVLSLTMSP------DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEE---CCCSSCEEEEEECT------TSSCEEEEETTTEEEEECCSCC
T ss_pred cEEEEE---cCCCCCEEEEEEcC------CCCEEEEEecCCeEEEEECCCC
Confidence 998655 47999999999999 6999999999999999998754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=242.55 Aligned_cols=284 Identities=13% Similarity=0.153 Sum_probs=206.9
Q ss_pred ceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEcc
Q 003360 16 VTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGA 95 (826)
Q Consensus 16 i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg 95 (826)
+..|.|. + ++.||+|. |++|++||+.++...+. + ....+..+|..|+|+. +|.+
T Consensus 108 ~~~l~wS-~-~n~lAvgl-d~tV~lWd~~tg~~~~~------------~--~~~~~~~~V~sv~fsp----dg~~----- 161 (420)
T 4gga_A 108 LNLVDWS-S-GNVLAVAL-DNSVYLWSASSGDILQL------------L--QMEQPGEYISSVAWIK----EGNY----- 161 (420)
T ss_dssp CBCEEEC-T-TSEEEEEE-TTEEEEEETTTCCEEEE------------E--ECCSTTCCEEEEEECT----TSSE-----
T ss_pred ceeEEEC-C-CCEEEEEe-CCEEEEEECCCCCEEEE------------E--EecCCCCcEEEEEECC----CCCE-----
Confidence 4679995 3 46888885 99999999998621111 1 1122344677777754 2333
Q ss_pred CCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCC
Q 003360 96 SDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR 175 (826)
Q Consensus 96 ~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~ 175 (826)
+++++.+|.+.+||...-
T Consensus 162 ----------------------------------------------------lasgs~Dg~v~iWd~~~~---------- 179 (420)
T 4gga_A 162 ----------------------------------------------------LAVGTSSAEVQLWDVQQQ---------- 179 (420)
T ss_dssp ----------------------------------------------------EEEEETTSCEEEEETTTT----------
T ss_pred ----------------------------------------------------EEEEECCCeEEEEEcCCC----------
Confidence 344555667778877551
Q ss_pred CCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee--eCCCCCEEEEEEC
Q 003360 176 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS--HSKVKNLFITGHS 251 (826)
Q Consensus 176 ~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~--~s~~~~~l~Tgs~ 251 (826)
.....+..|...|.++++ ++..+++++ |+.+++|+..... ......+|...+.. ++++++++++++.
T Consensus 180 -------~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -------cEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 123446788888888765 578888888 9999999654322 22223678888888 9999999999999
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEE--EeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVS--GDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Las--gs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
||.|++||...... ..........|...|.+++|+|.+ .++++ |+.|++|++||+.++..
T Consensus 251 D~~v~i~~~~~~~~------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----------- 313 (420)
T 4gga_A 251 DNLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----------- 313 (420)
T ss_dssp TSCEEEEESSCCSS------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----------
T ss_pred cccceEEeeccccc------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----------
Confidence 99999999943321 000011234577899999999976 45555 45799999999985432
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe--cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS--DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs--~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
.........|.++.|++++..+++++ .||.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 314 -----------~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---~gH~~~V~~l~~sp----- 374 (420)
T 4gga_A 314 -----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSP----- 374 (420)
T ss_dssp -----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECT-----
T ss_pred -----------ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcC-----
Confidence 33445577899999999999888765 7999999999999988655 48999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
|+.+|++|+.|++|++||+.......
T Consensus 375 -dg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 375 -DGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp -TSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred -CCCEEEEEecCCeEEEEECCCCCccc
Confidence 69999999999999999998655443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=237.55 Aligned_cols=330 Identities=12% Similarity=0.098 Sum_probs=222.9
Q ss_pred eEEEeccCccEEEecc----hhHHH-----HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEE
Q 003360 147 SFLLLGKSGHFYAFDD----CQIER-----YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYS 216 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~----~~i~~-----~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~ 216 (826)
.+++++.+|.+.+||. ..-.. ....... +.........|...|++++|+|+++++++++ |+.|+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccc------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 7788888999999998 44110 0000000 0000111233678999999999999999988 99999
Q ss_pred EeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccc-------ccccCCCCeE
Q 003360 217 LLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK-------DFSLSGIPLT 287 (826)
Q Consensus 217 ~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~-------~~~~h~~~V~ 287 (826)
+|+........+ ..|.+.|.+ |+|++++|++++.||.|++||+..... +..+...... ....+...|.
T Consensus 134 i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 134 LWNKTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV--MQHFELKETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEETTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE--EEEECCC---------------CCCBS
T ss_pred EEeCCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEeeccccCccceeeccccCCcceee
Confidence 998555444444 678999988 999999999999999999999954442 1222211000 0001112289
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
+++|+|++ .+++++.||.|++||++.+... .....+...|++++|+|++.+|++|+.|
T Consensus 211 ~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 211 DVEWVDDD-KFVIPGPKGAIFVYQITEKTPT---------------------GKLIGHHGPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp CCEEEETT-EEEEECGGGCEEEEETTCSSCS---------------------EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCC-EEEEEcCCCeEEEEEcCCCcee---------------------eeeccCCCceEEEEECCCCCEEEEEcCC
Confidence 99999985 5889999999999999854321 2334567889999999999999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceE
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALF 447 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ls 447 (826)
|.|++||+++++.+... ..|...|.++.|++ ++ ++++++.|+.|++||..+++.+..+..|.. .+.+
T Consensus 269 ~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~------~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~ 335 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCF---YGHSQSIVSASWVG------DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV---PIFA 335 (425)
T ss_dssp SCEEEECSSSBSCSEEE---CCCSSCEEEEEEET------TT-EEEEEETTSEEEEEETTTTEEEEEEECTTC---CEEE
T ss_pred CEEEEEECCCCccceEe---cCCCccEEEEEECC------CC-EEEEEeCCCcEEEEECCCCcEeEecccCCc---cEEE
Confidence 99999999988877544 36788999999998 46 999999999999999999998887654432 2333
Q ss_pred EEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecccccc------cc---------ceeeee
Q 003360 448 MQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQ------GV---------KKVLYK 511 (826)
Q Consensus 448 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~------g~---------~k~~~k 511 (826)
+.+ .+++.++++++ ++.|++|++..... +. ...+..
T Consensus 336 ~~~----------------------------s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 336 GRI----------------------------SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387 (425)
T ss_dssp EEE----------------------------CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred EEE----------------------------cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence 332 33445555555 56899999973210 00 002333
Q ss_pred eecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 512 KKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 512 ~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
............+.-++.+..|++...+|.|++|.++
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 3222111011111122667788889999999999886
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-24 Score=242.01 Aligned_cols=229 Identities=10% Similarity=0.086 Sum_probs=175.9
Q ss_pred eeee-cccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCC---Cc-e-eecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKM-PFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSV---PP-L-LDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l-~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~---~~-~-~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
...+ ..|...|++++|+| +++++++++ |++|++|+... .. . .....+|.+.|.+ |+|++++|++|+.||+
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 3445 77889999999999 999999998 99999996432 11 1 1222368999999 9999999999999999
Q ss_pred EEEEeCC---CCceeeeeecccccccc--ccc--CCCCeEEEE--EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 255 INFWDVS---CPLFLLILSLKQQSEKD--FSL--SGIPLTALY--YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 255 VriWD~s---~~~~~~i~~l~~~~~~~--~~~--h~~~V~~l~--fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
|++||+. .... +..+....... +.. +...+.++. +++++.+|++|+.||.|++||++....
T Consensus 135 i~vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-------- 204 (437)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE--------
T ss_pred EEEEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--------
Confidence 9999982 2221 11111111111 112 557788888 568899999999999999999985432
Q ss_pred EeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 326 FTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
. ..+.. |.+.|++++|+|++.+|++|+.||+|++||++.+.++.... ..|..+|.+++|.|.
T Consensus 205 ---------~----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~- 268 (437)
T 3gre_A 205 ---------L----QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQF- 268 (437)
T ss_dssp ---------E----EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTT-
T ss_pred ---------e----EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccc-
Confidence 1 22222 67899999999999999999999999999999998885543 256779999988874
Q ss_pred cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
...++.+|++|+.|+.|++||+.+++++..+..+..
T Consensus 269 -~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 269 -YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp -TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred -cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 222578999999999999999999999988866543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-23 Score=236.64 Aligned_cols=270 Identities=14% Similarity=0.138 Sum_probs=204.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.|.+||...- .....+..|...|++++|++++ .+++++ |+.|++|+.....
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-----------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-----------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEcCCCcEEEEECCCC-----------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 46788899999999997651 1344567899999999999988 788887 9999999876544
Q ss_pred eeecccccCCccee--eC--CCCCEEEEEECCCcEEEEeCCCCceeeeeeccc--------c-----cccccccCCCCeE
Q 003360 225 LLDFETKLKDGSQS--HS--KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ--------Q-----SEKDFSLSGIPLT 287 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s--~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--------~-----~~~~~~~h~~~V~ 287 (826)
......+|.+.|.+ ++ ++++++++|+.||+|++||+............. . ....+..|...|.
T Consensus 195 ~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274 (464)
T ss_dssp EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE
T ss_pred EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE
Confidence 44333679999988 55 688999999999999999994332111000000 0 0112345777888
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
++ ++++.+|++|+.||.|++||+++... . ..+..|...|++++|+|++.++++|+.|
T Consensus 275 ~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-----------------~----~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 275 TV--SGHGNIVVSGSYDNTLIVWDVAQMKC-----------------L----YILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp EE--EEETTEEEEEETTSCEEEEETTTTEE-----------------E----EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred EE--cCCCCEEEEEeCCCeEEEEECCCCcE-----------------E----EEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 77 57789999999999999999984322 1 3344567889999999999999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceE
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALF 447 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ls 447 (826)
|.|++||+++++++.... +|...|.++.|+ +.+|++++.||+|++||..++...... +.......++
T Consensus 332 g~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--------~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~ 398 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQ---GHTALVGLLRLS--------DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITT 398 (464)
T ss_dssp SCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEE
T ss_pred CcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--------CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEE
Confidence 999999999999886553 788899999986 468999999999999999988766553 2222222222
Q ss_pred EEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 448 MQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 448 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
+ .+++.++++++++.|+||++.
T Consensus 399 ~------------------------------~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 399 F------------------------------YVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp E------------------------------EECSSEEEEEETTEEEEEETT
T ss_pred E------------------------------EeCCCEEEEecCCeEEEEECC
Confidence 2 234568888889999999997
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=243.74 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=182.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC--ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP--PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~--~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
...+..+|++++|+|+++++++++ |+.|++|+.... .......+|.+.|.+ |+|++++|++|+.||+|++||+..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 456778999999999999999997 999999976543 222223679999999 999999999999999999999943
Q ss_pred Cc-eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PL-FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.. ..+.. .+..|...|++++|+|++.+|++|+.||.|++||++.+.... .. ..
T Consensus 87 ~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------~~----~~ 140 (377)
T 3dwl_C 87 DGTWKQTL--------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW--------------VS----KH 140 (377)
T ss_dssp --CCCCEE--------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC--------------CC----EE
T ss_pred CCceeeee--------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce--------------ee----eE
Confidence 32 11111 124578899999999999999999999999999998543100 00 22
Q ss_pred Eee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCC------------------CeeEEeeecccCCCCCeeEEEEeec
Q 003360 342 VMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG------------------PTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 342 ~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~------------------~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
... |...|++++|+|++.+|++|+.||+|++||+.. +.++. . . .|...|.+++|+|
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~v~~~~~sp- 215 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA--E-Y-PSGGWVHAVGFSP- 215 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE--C-C-CCSSSEEEEEECT-
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh--c-c-cCCceEEEEEECC-
Confidence 223 688899999999999999999999999999953 33332 2 2 7889999999999
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCce----EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGNM----LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENA 478 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~----i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (826)
++.+|++++.|++|++||..+++. +..+..|. ..+.++.+
T Consensus 216 -----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~---------------------------- 259 (377)
T 3dwl_C 216 -----SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLW---------------------------- 259 (377)
T ss_dssp -----TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEE----------------------------
T ss_pred -----CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC---CceEEEEE----------------------------
Confidence 589999999999999999999887 54443332 22333333
Q ss_pred CCCCCEEEEeecCcEEEEecc
Q 003360 479 VPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 479 ~~~~~~vv~~se~~irv~sl~ 499 (826)
.+++.++++++++.+.+|...
T Consensus 260 s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 260 ANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EETTEEEEEESSSSEEEECCC
T ss_pred cCCCCEEEEEcCCcEEEEEeC
Confidence 334567888888888888875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=232.91 Aligned_cols=300 Identities=13% Similarity=0.090 Sum_probs=212.0
Q ss_pred eeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeec-c------------cccCCccee--eCC-CCCEE
Q 003360 185 MLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDF-E------------TKLKDGSQS--HSK-VKNLF 246 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~-~------------~~h~g~V~~--~s~-~~~~l 246 (826)
...+..|...|++++|+| ++.++++++ |+.|++|+......... . .+|.+.|.+ |+| ++++|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 344678999999999999 999999998 99999997554322211 0 248899988 899 78899
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---RVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
++|+.||+|++||+...... ..+ .+...+.++.|+|.+ .++++|+.||.|++||++.+...
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----- 179 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTA--DVF---------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----- 179 (408)
T ss_dssp EEEETTSEEEEEETTTTEEE--EEE---------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-----
T ss_pred EEEeCCCeEEEeeCCCCccc--eec---------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-----
Confidence 99999999999999655421 111 244689999999854 49999999999999999854331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCe-eEEeee------------cccC
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPT-VLYQKH------------IASD 389 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~-~l~~~~------------~~~~ 389 (826)
..+..|.+.|++++|+|++. ++++|+.||.|++||++.+. ++.... ....
T Consensus 180 ----------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 180 ----------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp ----------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred ----------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 23345678899999999998 58999999999999998765 222221 1146
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCC-cceEEEEecCCCCcccCcccccccc
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPS-RALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~-~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..+..... ....+..
T Consensus 244 ~~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 299 (408)
T 4a11_B 244 HNGKVNGLCFTS------DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV------------------ 299 (408)
T ss_dssp CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE------------------
T ss_pred ccCceeEEEEcC------CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE------------------
Confidence 788999999999 599999999999999999998876544322211100 0000000
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
.......+++++.++.+++|++. ..+.+.....+ ...... +..++.+..|+....+|.|++|.+.
T Consensus 300 --------~~~~~~~~~~~~~~~~i~v~d~~-----~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 300 --------SCGCSSEFVFVPYGSTIAVYTVY-----SGEQITMLKGH-YKTVDC-CVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp --------CCSSSSCEEEEEETTEEEEEETT-----TCCEEEEECCC-SSCEEE-EEEETTTTEEEEEETTSCEEEEEEC
T ss_pred --------ecCCCceEEEEecCCEEEEEECc-----CCcceeeeccC-CCeEEE-EEEcCCCCEEEEECCCCeEEEEeCC
Confidence 12234568888889999999997 33344443322 111111 1112667788899999999999998
Q ss_pred Ccccccc
Q 003360 549 ELSLLKE 555 (826)
Q Consensus 549 ~L~~l~~ 555 (826)
..+.+..
T Consensus 365 ~~~~~~~ 371 (408)
T 4a11_B 365 LYEPVPD 371 (408)
T ss_dssp C------
T ss_pred CCCccCC
Confidence 8877654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-24 Score=230.94 Aligned_cols=285 Identities=9% Similarity=0.062 Sum_probs=204.1
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|++++|. |+|.+|++|+.||.|++||+.++... .+...+ ..+..+|..+.|.. ++
T Consensus 8 ~~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~----~~~~~~v~~~~~~~----~~- 68 (342)
T 1yfq_A 8 QAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQS----LRYKHPLLCCNFID----NT- 68 (342)
T ss_dssp SCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTE---------EEEEEE----EECSSCEEEEEEEE----SS-
T ss_pred cCCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCcc---------ccceee----eecCCceEEEEECC----CC-
Confidence 3567799999995 79999999999999999998775100 000000 02234555555544 12
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCc-eEEEeccCccEEEecc-hhHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQD-SFLLLGKSGHFYAFDD-CQIER 167 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~-~liv~~~~G~l~~~d~-~~i~~ 167 (826)
. .+++++.+|.|++||. ..-
T Consensus 69 --------------------------------------------------------~~~l~~~~~dg~i~~wd~~~~~-- 90 (342)
T 1yfq_A 69 --------------------------------------------------------DLQIYVGTVQGEILKVDLIGSP-- 90 (342)
T ss_dssp --------------------------------------------------------SEEEEEEETTSCEEEECSSSSS--
T ss_pred --------------------------------------------------------CcEEEEEcCCCeEEEEEeccCC--
Confidence 2 3455556677888887 541
Q ss_pred HHhhccCCCCCCCCccceeeecc--cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC---------CceeecccccCCc
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMKLITGNSFILSSA-DEDYSLLAKSV---------PPLLDFETKLKDG 235 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~---------~~~~~~~~~h~g~ 235 (826)
....+.. |...|++++|++ +..+++++ |+.+++|+... ...... ..|.+.
T Consensus 91 ----------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (342)
T 1yfq_A 91 ----------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TKVKNK 152 (342)
T ss_dssp ----------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SSSCCC
T ss_pred ----------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-EeeCCc
Confidence 1134566 999999999999 99999988 99999996543 222212 338888
Q ss_pred cee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 003360 236 SQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 236 V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd 311 (826)
|.+ |++++ +++|+.||.|++||+.. ..... ... ...|...|++++|+| ++.+|++|+.||.|++|+
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~-~~~-------~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG-TIE-------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC-EEE-------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCccccccc-eee-------ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 888 88776 99999999999999954 32100 001 124667999999999 999999999999999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeec---------cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---------NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---------~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
++...... ..... ..+..+ ...|++++|+|++.+|++|+.||.|++||+.+++++.
T Consensus 223 ~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 223 FDDQGDDY-----------NSSKR----FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp CCTTCCST-----------TCTTC----EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred EcCCCccc-----------ccccc----eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 98541000 00000 112222 3489999999999999999999999999999999885
Q ss_pred eeecccCC-CCCeeEEEEeecccCCCCCcEEEEEECCCc-EEEEE
Q 003360 383 QKHIASDI-SSGIVSLQFETCSLQGFEKNFLVIATKDSS-VLVLD 425 (826)
Q Consensus 383 ~~~~~~~~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~-V~iwd 425 (826)
.. ..| ..+|.+++ + ++.+|++++.||+ .+.+.
T Consensus 288 ~~---~~~h~~~v~~~~--~------~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 288 NF---AKFNEDSVVKIA--C------SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EC---CCCSSSEEEEEE--E------CSSEEEEEEECTHHHHCSS
T ss_pred hh---hcccCCCceEec--C------CCCeEEEEecCCccccccc
Confidence 54 355 88999999 5 6999999999998 54444
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-23 Score=218.47 Aligned_cols=289 Identities=13% Similarity=0.097 Sum_probs=214.1
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++| +++..+++++ |+.|++|+............|.+.|.+ |+|++++|++|+.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 445668899999999999 9999999988 999999987655544444678999988 999999999999999999999
Q ss_pred C-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+ ....... ...+..|...|++++| ++..|++|+.||.|++||.. . . .
T Consensus 88 ~~~~~~~~~--------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--~-----------------~-~-- 135 (313)
T 3odt_A 88 LFATSGEDP--------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--S-----------------L-V-- 135 (313)
T ss_dssp TTCCTTSCC---------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--E-----------------E-E--
T ss_pred eeecCCCCc--------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--c-----------------E-E--
Confidence 9 3322111 1223468889999999 56799999999999999922 1 0 0
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....+..+|.+++|+| ++.++++|+.||.|++||. ...+.... ..+...|.++.|++ ++. +++++.
T Consensus 136 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~--~~~~~~i~~~~~~~------~~~-~~~~~~ 203 (313)
T 3odt_A 136 -YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFS--GIHNDVVRHLAVVD------DGH-FISCSN 203 (313)
T ss_dssp -EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEEC--SSCSSCEEEEEEEE------TTE-EEEEET
T ss_pred -EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEe--ccCcccEEEEEEcC------CCe-EEEccC
Confidence 33445678899999988 8999999999999999994 34442232 34788999999999 355 999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEe
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYS 497 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~s 497 (826)
|+.|++||..+++.+..+..|. ..+.++.+ .+++.++..+.++.|++|+
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~----------------------------~~~~~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHE---SFVYCIKL----------------------------LPNGDIVSCGEDRTVRIWS 252 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEE----------------------------CTTSCEEEEETTSEEEEEC
T ss_pred CCeEEEEECCchhhhhhhhcCC---ceEEEEEE----------------------------ecCCCEEEEecCCEEEEEE
Confidence 9999999999999988875443 23334433 2334466677778999999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
+. ..+.+...... ........+ .+.+. +++...+|.|+++.+...+.+.+
T Consensus 253 ~~-----~~~~~~~~~~~-~~~i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 253 KE-----NGSLKQVITLP-AISIWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TT-----TCCEEEEEECS-SSCEEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred CC-----CCceeEEEecc-CceEEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 97 33344444333 222222112 23344 77788999999999987766655
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=235.46 Aligned_cols=213 Identities=9% Similarity=0.087 Sum_probs=158.0
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
.+..|...|++++|+++++.+++++ |++|++|+..... ...+ .+|.+.|.+ |++ ++++|++|+.||+|+||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3578999999999999999999999 9999999765422 2333 689999998 765 48999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.......+.. +..|...|++++|+|+ +.+|++|+.||+|++||++..... ...
T Consensus 87 d~~~~~~~~~~~--------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---------------~~~ 143 (316)
T 3bg1_A 87 REENGTWEKSHE--------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---------------EVK 143 (316)
T ss_dssp CCSSSCCCEEEE--------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------------EEC
T ss_pred ECCCCcceEEEE--------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------------cee
Confidence 995432112122 2468889999999998 789999999999999999843210 000
Q ss_pred EEEEEEeeccCCeEEEEEccC-----------------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRN-----------------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~-----------------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
.....|...|.+++|+|+ +.+|++|+.||+|++||++............+|..+|.+++|
T Consensus 144 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 144 ---KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp ---CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred ---eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence 111234567888899887 468999999999999999755211112233578999999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+|. .+.++.+|++|+.|++|++|+..+
T Consensus 221 sp~--~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 221 APS--IGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCC--SSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCC--CCCCCceEEEEcCCCeEEEEEccC
Confidence 993 111237899999999999999876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-24 Score=234.70 Aligned_cols=245 Identities=15% Similarity=0.182 Sum_probs=189.2
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC----C---CeEEEec-CCcEEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG----N---SFILSSA-DEDYSL 217 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~---~~l~~~~-d~~i~~ 217 (826)
..+++++.+|.|.+||..... . ..+......+..|...|++++|+++ + ..+++++ |+.|++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~-------~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD-------N----ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT-------T----CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred CeEEEEcCCCEEEEEECCCcc-------c----ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 567888899999999987621 0 0112345567789999999999999 9 9999988 999999
Q ss_pred eccCCCc------eeeccccc-----CCccee--eC----CCCCE-EEEEECCCcEEEEeCCC-------Cceeeeeecc
Q 003360 218 LAKSVPP------LLDFETKL-----KDGSQS--HS----KVKNL-FITGHSDGAINFWDVSC-------PLFLLILSLK 272 (826)
Q Consensus 218 w~~~~~~------~~~~~~~h-----~g~V~~--~s----~~~~~-l~Tgs~DGtVriWD~s~-------~~~~~i~~l~ 272 (826)
|+..... ...+ ..| .+.|.+ |+ |++++ |++|+.||.|++||+.. ... .
T Consensus 96 w~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 168 (397)
T 1sq9_A 96 YRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL------N 168 (397)
T ss_dssp EEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT------C
T ss_pred EEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee------e
Confidence 9755433 3333 556 588888 89 99999 99999999999999943 331 1
Q ss_pred ccccccc-------ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-
Q 003360 273 QQSEKDF-------SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK- 344 (826)
Q Consensus 273 ~~~~~~~-------~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~- 344 (826)
......+ ..|...|++++|+|++ +|++|+.||.|++||++.... . ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-----------------~----~~~~~~ 226 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-----------------L----YNFESQ 226 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-----------------E----EEEECC
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce-----------------e----EEEecc
Confidence 0001112 3467899999999999 999999999999999984321 1 22233
Q ss_pred --c---cCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCC
Q 003360 345 --I---NGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQG 406 (826)
Q Consensus 345 --~---~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~ 406 (826)
| ...|++++|+|++.+|++|+.| |.|++||+++++.+....... .|...|.+++|++
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----- 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND----- 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-----
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-----
Confidence 5 7789999999999999999999 999999999998885553100 0788999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.+|++++.|+.|++||+.+++.+..+.
T Consensus 302 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 302 -SGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 58999999999999999999999998876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=230.08 Aligned_cols=211 Identities=11% Similarity=0.166 Sum_probs=170.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
.+..|...|++++|+|+++++++++ |+.|++|+.. .........+|.+.|.+ |+++ +++|++|+.||+|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 4688999999999999999999998 9999999764 22222223679999988 8877 89999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.......+.. +..|...|++++|+|+ +.+|++|+.||.|++||++..... ..
T Consensus 86 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------------~~--- 140 (379)
T 3jrp_A 86 EENGRWSQIAV--------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------------SP--- 140 (379)
T ss_dssp EETTEEEEEEE--------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------------CE---
T ss_pred cCCCceeEeee--------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------------ee---
Confidence 95443222222 2357789999999999 999999999999999999854221 01
Q ss_pred EEEEEeeccCCeEEEEEcc-------------CCCEEEEEecCCeEEEEecCCCeeEEe-eecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNR-------------NSQHLAVGSDQGYVYLLDTEGPTVLYQ-KHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~-------------~g~~lasGs~dG~V~vwD~~~~~~l~~-~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....+...|++++|+| ++.+|++|+.||.|++||++.+..... ......|..+|.+++|+|
T Consensus 141 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-- 216 (379)
T 3jrp_A 141 --IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-- 216 (379)
T ss_dssp --EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--
T ss_pred --EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC--
Confidence 33445678899999999 699999999999999999987653311 122347889999999999
Q ss_pred cCCCC---CcEEEEEECCCcEEEEECCCCc
Q 003360 404 LQGFE---KNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 404 ~~~~d---~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+ +.+|++++.||.|++||..++.
T Consensus 217 ----~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 217 ----TVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ----CCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ----CCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 5 7899999999999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=239.69 Aligned_cols=299 Identities=14% Similarity=0.184 Sum_probs=207.6
Q ss_pred CCEEEEEEeeCCC-eEEEe----------c-CCcEEEeccCCCce--eecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 193 SSITAMKLITGNS-FILSS----------A-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 193 ~~Vt~~~fs~~~~-~l~~~----------~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
+.|++++|+|+++ +++++ + |+.|++|+...... ......|.+.|.+ |+|++++|++|+.||+|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688899999987 88888 6 88999997654321 1112468889988 999999999999999999
Q ss_pred EEeCCCCc--eeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+||+.... ...+. .+..|...|++++|+|+ +.+|++|+.||.|++||+......... . .
T Consensus 93 vw~~~~~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~---------~ 154 (416)
T 2pm9_A 93 LYSTNEANNAINSMA--------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-Y---------T 154 (416)
T ss_dssp EECCSSTTSCCCEEE--------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-C---------C
T ss_pred Eeecccccccccchh--------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-c---------c
Confidence 99995411 00112 23468899999999998 899999999999999999865411000 0 0
Q ss_pred eEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeeccc---CCCCCeeEEEEeecccCCCCC
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS---DISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~ 409 (826)
...+ .....|...|++++|+|+ +.+|++|+.||.|++||+++++.+....... +|...|.+++|+|. +.
T Consensus 155 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 227 (416)
T 2pm9_A 155 PLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK-----NS 227 (416)
T ss_dssp CBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS-----CT
T ss_pred cccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC-----CC
Confidence 0000 112345778999999999 7899999999999999999998886554321 12788999999993 23
Q ss_pred cEEEEEECCC---cEEEEECCCC-ceEEeee-ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCC-CCC
Q 003360 410 NFLVIATKDS---SVLVLDSDNG-NMLSTNL-IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVP-KQW 483 (826)
Q Consensus 410 ~~l~sgs~Dg---~V~iwd~~tg-~~i~~~~-~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 483 (826)
.++++++.|+ .|++||++++ ..+..+. .| ...+.++.+ .+ ++.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~---~~~v~~~~~----------------------------s~~~~~ 276 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH---QKGILSLDW----------------------------CHQDEH 276 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC---SSCEEEEEE----------------------------CSSCSS
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc---cCceeEEEe----------------------------CCCCCC
Confidence 6899999999 9999999986 4444432 22 233334333 22 334
Q ss_pred EEEE-eecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCCccccc
Q 003360 484 FVLL-CSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 484 ~vv~-~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
++++ +.++.|++|++.. .+.+.....+.... .... -++.+ ..++....+|.|+++.+...+...
T Consensus 277 ~l~s~~~dg~v~~wd~~~-----~~~~~~~~~~~~~v-~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPES-----AEQLSQFPARGNWC-FKTK-FAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CEEEEESSSEEEEECSSS-----CCEEEEEECSSSCC-CCEE-ECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEeCCCCEEEeeCCC-----CccceeecCCCCce-EEEE-ECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 4444 4567999999973 33444433221111 1111 11444 677888889999999998876543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=230.20 Aligned_cols=260 Identities=7% Similarity=0.013 Sum_probs=184.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC----CCeEEEec-CCcEEEec
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG----NSFILSSA-DEDYSLLA 219 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~ 219 (826)
...+++.+..|.+.+||...-... ........+.|...|++++|+++ ++.+++++ |+.|++|+
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEI------------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCE------------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred CceEEEECCCCEEEEEEcCCCcEE------------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 456788888899999998752100 00111222347789999999999 66888888 99999998
Q ss_pred cCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 220 KSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 220 ~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
...........+|.+.|.+ |+| ++++|++|+.||+|++||+..... +..+. .+..|...|++++|+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 102 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VAIFG-----GVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp TTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EEEEC-----STTSCSSCEEEEEECTTSS
T ss_pred chhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EEEec-----ccccccCceeEEEECCCCC
Confidence 6654444333679999999 999 899999999999999999955442 12221 1135788999999999999
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe-----EEEEE---EEEeeccCCeEEEEEccCCCEEEEEecCC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS-----HIIHS---VKVMKINGSIISLNMNRNSQHLAVGSDQG 368 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~-----~~~~~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG 368 (826)
+|++|+.||.|++||++......... ..+.+++++.. ...+. .....|...|++++|+ +.++++|+.||
T Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSKRMMNAIK-ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp EEEEEETTSCEEEEESCSHHHHHHHH-HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred EEEEecCCCCEEEEECCCCccccccc-eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 99999999999999998652210000 00001111100 00000 1222367889999999 67999999999
Q ss_pred eEEEEecCCCeeE-----------EeeecccCCCCCeeEEEEeecccCCCC--CcEEEEEECCCcEEEEECCCCceE
Q 003360 369 YVYLLDTEGPTVL-----------YQKHIASDISSGIVSLQFETCSLQGFE--KNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 369 ~V~vwD~~~~~~l-----------~~~~~~~~~~~~V~sl~f~~~~~~~~d--~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.|++||++++... ........|...|++++|++ + +.+|++|+.||.|++||+.+++..
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM------DFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE------CTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC------CCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 9999999876440 01122246778899999998 5 899999999999999999988643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=225.29 Aligned_cols=303 Identities=13% Similarity=0.182 Sum_probs=203.6
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-----CCcEEEeccCCCceeec-ccccCCccee--eCCC---CCEEEEEECCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-----DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKV---KNLFITGHSDG 253 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~---~~~l~Tgs~DG 253 (826)
......|...|++++|+|++..+++++ |+.|++|+......... ..+|.+.|.+ |+|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 334567999999999999997766544 78999997665444332 3578999998 9998 69999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE------eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY------DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f------sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
.|++||+..... + ...+..|...|++++| +|++.+|++|+.||.|++||++..... +
T Consensus 91 ~i~iwd~~~~~~-~--------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----~---- 153 (357)
T 3i2n_A 91 NLHIWNLEAPEM-P--------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----V---- 153 (357)
T ss_dssp CEEEECTTSCSS-C--------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC----S----
T ss_pred eEEEEeCCCCCc-c--------EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc----c----
Confidence 999999943320 1 1123468889999965 678999999999999999999865321 0
Q ss_pred ecCCCCeEEEEEEEEeec----cCCeEEEE----EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 328 GSKKGNSHIIHSVKVMKI----NGSIISLN----MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~----~~~V~~l~----~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
.....+ ...|.+++ |++++.++++|+.||.|++||++++.+... ..+...|.++.|
T Consensus 154 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~ 217 (357)
T 3i2n_A 154 ------------ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEF 217 (357)
T ss_dssp ------------EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEE
T ss_pred ------------eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEc
Confidence 111112 33688888 789999999999999999999999987643 256789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc--CCCCCcceEEEEecCCCCcccCccccccccccCCCCCCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH--PKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKEN 477 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~--~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (826)
+|. ..++.+|++++.||.|++||..+++.+..+... ......+.++.+
T Consensus 218 ~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------------------- 267 (357)
T 3i2n_A 218 DRK---DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH--------------------------- 267 (357)
T ss_dssp SCS---SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE---------------------------
T ss_pred CCC---CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE---------------------------
Confidence 982 112789999999999999999876654433210 011222333332
Q ss_pred CCCCCC-EEEEe-ecCcEEEEecccccc--------------ccceeeeeeecCCCCceeeEeeeeCCceEEE-EEEeec
Q 003360 478 AVPKQW-FVLLC-SEKAACAYSLSHAVQ--------------GVKKVLYKKKFHSSSCCWASTFYSGSDVGLM-LLFTSG 540 (826)
Q Consensus 478 ~~~~~~-~vv~~-se~~irv~sl~~~~~--------------g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv-~~~~~G 540 (826)
.+++. +++++ .++.|++|++..... +..+.+.....+ ..-... +.-++.+..|+ ....+|
T Consensus 268 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 268 -LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISS-LDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp -ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEE-EEECSSSTTEEEEEETTS
T ss_pred -CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeE-EEEcCCCCeEEEEecCCC
Confidence 23333 45544 456899999873210 011233333222 111111 11125566666 678899
Q ss_pred eEEEeccCCcccc
Q 003360 541 KFEIRSLPELSLL 553 (826)
Q Consensus 541 ~I~i~slP~L~~l 553 (826)
.|++|.+..++.|
T Consensus 345 ~i~iw~~~~~~~i 357 (357)
T 3i2n_A 345 TVRVLIVTKLNKI 357 (357)
T ss_dssp EEEEEEECC----
T ss_pred cEEEEECCCcccC
Confidence 9999998877643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=236.39 Aligned_cols=223 Identities=13% Similarity=0.232 Sum_probs=165.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.+.+||..+- .....+..|...|++++|+ +..+++++ |+.|++|+......
T Consensus 185 ~l~sg~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTG-----------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp EEEEEETTSCEEEEESSSC-----------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC
T ss_pred EEEEEcCCCeEEEEECCCC-----------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC
Confidence 4456666788888887651 1234467899999999996 45888888 99999997654332
Q ss_pred e---ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 L---DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~---~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
. ....+|.+.|.+...+++++++|+.||+|++||+..... +.. +..|...|.+++|+ +.+|++|+
T Consensus 246 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~--------~~~~~~~v~~~~~~--~~~l~~g~ 313 (435)
T 1p22_A 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRT--------LNGHKRGIACLQYR--DRLVVSGS 313 (435)
T ss_dssp CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--EEE--------EECCSSCEEEEEEE--TTEEEEEE
T ss_pred ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE--EEE--------EcCCCCcEEEEEeC--CCEEEEEe
Confidence 2 234678999988444889999999999999999954442 222 34677899999995 67999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe---
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--- 379 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--- 379 (826)
.||.|++||++++.. . ..+..|...|++++| ++.+|++|+.||.|++||+.++.
T Consensus 314 ~dg~i~iwd~~~~~~-----------------~----~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 314 SDNTIRLWDIECGAC-----------------L----RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp TTSCEEEEETTTCCE-----------------E----EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCeEEEEECCCCCE-----------------E----EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 999999999985432 1 233456788999999 67899999999999999997655
Q ss_pred ------eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 380 ------VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 380 ------~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++... .+|..+|+++.|. +.+|++|+.||+|++||..++.....
T Consensus 371 ~~~~~~~~~~~---~~h~~~v~~l~~~--------~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 371 APAGTLCLRTL---VEHSGRVFRLQFD--------EFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp SCTTTTEEEEE---CCCSSCCCCEEEC--------SSCEEECCSSSEEEEEC---------
T ss_pred ccccchheeec---cCCCCCeEEEEeC--------CCEEEEEeCCCEEEEEECCCCCCccc
Confidence 55333 4788899999992 67799999999999999987655433
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-22 Score=226.57 Aligned_cols=302 Identities=14% Similarity=0.177 Sum_probs=221.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.+.+||..+. .....+..|...|++++|+ +..+++++ |+.|++|+.....
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTG-----------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp TEEEEEETTSCEEEEETTTC-----------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEECCCcEEEEECCCC-----------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 56788899999999998651 1334567899999999997 67888888 9999999866544
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
......+|.+.|.+...+++.+++|+.||+|++||+..... +.. +..|...|++++| ++..|++|+.|
T Consensus 191 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~--------~~~~~~~v~~~~~--~~~~l~~~~~d 258 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC--LHV--------LMGHVAAVRCVQY--DGRRVVSGAYD 258 (445)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE--EEE--------EECCSSCEEEEEE--CSSCEEEEETT
T ss_pred EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE--EEE--------EcCCcccEEEEEE--CCCEEEEEcCC
Confidence 43333679999998444578899999999999999954432 122 2367889999999 77899999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
|.|++||++++.. . .....|...|++++| ++.++++|+.||.|++||+++++++...
T Consensus 259 g~i~iwd~~~~~~-----------------~----~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 259 FMVKVWDPETETC-----------------L----HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp SCEEEEEGGGTEE-----------------E----EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCcE-----------------e----EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 9999999974322 1 233356778999999 7889999999999999999999988555
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccc
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
. .|...+.++.+. +.++++|+.||.|++||..+++.+.++..+......+.++.+-
T Consensus 316 ~---~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~------------- 371 (445)
T 2ovr_B 316 T---GHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN------------- 371 (445)
T ss_dssp C---CCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-------------
T ss_pred c---CCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-------------
Confidence 3 677888888774 5689999999999999999999998876544444445555431
Q ss_pred ccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEeccccccccceeeeeeec----CCCCceeeEeeeeCCceEEEEEEee
Q 003360 465 NVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLSHAVQGVKKVLYKKKF----HSSSCCWASTFYSGSDVGLMLLFTS 539 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~~~~~g~~k~~~k~~~----~~~~c~~~~~~~~~~~~~lv~~~~~ 539 (826)
+.+++++ .++.|++|++. ..+.+..... .....++... .++.+..+++...+
T Consensus 372 -----------------~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~la~~~~d 428 (445)
T 2ovr_B 372 -----------------KNFVITSSDDGTVKLWDLK-----TGEFIRNLVTLESGGSGGVVWRIR-ASNTKLVCAVGSRN 428 (445)
T ss_dssp -----------------SSEEEEEETTSEEEEEETT-----TCCEEEEEEECTTGGGTCEEEEEE-ECSSEEEEEEECSS
T ss_pred -----------------CCEEEEEeCCCeEEEEECC-----CCceeeeeeccccCCCCceEEEEE-ecCCEEEEEEcccC
Confidence 1355555 46789999997 3333333310 0012222211 12667777888888
Q ss_pred ce----EEEeccC
Q 003360 540 GK----FEIRSLP 548 (826)
Q Consensus 540 G~----I~i~slP 548 (826)
|. |.++++.
T Consensus 429 g~~~~~l~v~df~ 441 (445)
T 2ovr_B 429 GTEETKLLVLDFD 441 (445)
T ss_dssp SSSCCEEEEEECC
T ss_pred CCCccEEEEEECC
Confidence 87 7777653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=225.87 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=205.6
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+..+.|...+.+..+..++..+++++ |+.|++|+......... ...|.+.|.+ |+|++++|++|+.||.|++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34456666555544555556677766 99999997665444333 3458888988 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... +.. +..|...|.+++|+ +..|++|+.||.|++||++.... .. ..
T Consensus 165 ~~~~--~~~--------~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~----------------~~----~~ 212 (401)
T 4aez_A 165 SQTK--LRT--------MAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH----------------QI----GT 212 (401)
T ss_dssp TCCE--EEE--------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC----------------EE----EE
T ss_pred CCeE--EEE--------ecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc----------------ee----eE
Confidence 4432 122 23688899999995 57999999999999999983321 11 34
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCC
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDS 419 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg 419 (826)
...|.+.|++++|+|++.+|++|+.||.|++||++++..+.... .|..+|.+++|+|. ...++++++ .|+
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~-----~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPW-----QSNLLATGGGTMDK 284 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTT-----STTEEEEECCTTTC
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCC-----CCCEEEEecCCCCC
Confidence 45678899999999999999999999999999999988885543 68889999999994 245666665 799
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee---cCcEEEE
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS---EKAACAY 496 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s---e~~irv~ 496 (826)
.|++||..+++.+..+..+ ..+.++. +.+++.++++++ ++.++||
T Consensus 285 ~i~i~d~~~~~~~~~~~~~----~~v~~~~----------------------------~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDAG----SQVTSLI----------------------------WSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp EEEEEETTTCCEEEEEECS----SCEEEEE----------------------------ECSSSSEEEEEECTTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCC----CcEEEEE----------------------------ECCCCCeEEEEeecCCCcEEEE
Confidence 9999999999988876321 2233332 334555666654 7899999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
++... ..........+.... . .+..++.+..|++...+|.|++|.+.+.+.+..
T Consensus 333 ~~~~~---~~~~~~~~~~h~~~v-~-~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 333 SYSSS---GLTKQVDIPAHDTRV-L-YSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEETT---EEEEEEEEECCSSCC-C-EEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCc---cceeEEEecCCCCCE-E-EEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99731 111111111111111 1 111126677888889999999999988776654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=228.23 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=205.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++++.++.|++||..+- .....+.+..|...|++++|+|+++++++|+ |+.|++|+.......
T Consensus 118 ~lAvgld~tV~lWd~~tg---------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG---------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp EEEEEETTEEEEEETTTC---------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEeCCEEEEEECCCC---------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 455556899999998761 1112334567888999999999999999999 999999987654444
Q ss_pred ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 227 DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
....+|...+.+++.++.+|++|+.|+++++||...... .+. .+..|...+..+.|+|++.++++++.||.
T Consensus 183 ~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~-~~~--------~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-HVA--------TLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-EEE--------EEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce-eeE--------EecccccceeeeeecCCCCeeeeeecccc
Confidence 444789999988777889999999999999999843331 111 23468889999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEE--EecCCeEEEEecCCCeeEEe
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAV--GSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~las--Gs~dG~V~vwD~~~~~~l~~ 383 (826)
|++|+...+.... ... .....+.+.|.+++|+|.+. ++++ |+.||+|++||+.++.++..
T Consensus 254 v~i~~~~~~~~~~-------------~~~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 254 VNVWPSAPGEGGW-------------VPL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EEEEESSCCSSCS-------------CCS----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred ceEEeeccccccc-------------eee----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 9999998654311 010 23445678899999999654 4554 45899999999999998855
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
.. +...+.++.|.+ ++..+++++ .|+.|+|||..+++++.++.+|. ..+.++.+
T Consensus 317 ~~----~~~~v~~~~~~~------~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~---~~V~~l~~----------- 372 (420)
T 4gga_A 317 VD----AHSQVCSILWSP------HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT---SRVLSLTM----------- 372 (420)
T ss_dssp EE----CSSCEEEEEEET------TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS---SCEEEEEE-----------
T ss_pred ec----cccceeeeeecC------CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC---CCEEEEEE-----------
Confidence 53 345789999998 477777765 79999999999999999987764 34455543
Q ss_pred cccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecc
Q 003360 462 NLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLS 499 (826)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~ 499 (826)
++++.+|+.++ |+.||||++.
T Consensus 373 -----------------spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 373 -----------------SPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp -----------------CTTSSCEEEEETTTEEEEECCS
T ss_pred -----------------cCCCCEEEEEecCCeEEEEECC
Confidence 33445555555 5689999986
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=256.39 Aligned_cols=211 Identities=10% Similarity=0.092 Sum_probs=166.3
Q ss_pred cccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
..|...|++++|+++ +..+++++ |+.|++|+..... ......+|.+.|.+ |+|+ ++++++|+.||+|++||
T Consensus 50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd 129 (753)
T 3jro_A 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129 (753)
T ss_dssp CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence 567788999999988 89999998 9999999765542 22223679999999 9999 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-------------TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-------------~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+....... ...+..|...|++++|+| ++..|++|+.||.|++||++.+....
T Consensus 130 l~~~~~~~--------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~------- 194 (753)
T 3jro_A 130 FKENGTTS--------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------- 194 (753)
T ss_dssp CCSSSCCC--------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-------
T ss_pred eecCCCcc--------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-------
Confidence 94442111 111246778999999999 58999999999999999998543210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeEE--eeecccCCCCCeeEEEEee
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVLY--QKHIASDISSGIVSLQFET 401 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l~--~~~~~~~~~~~V~sl~f~~ 401 (826)
... .....|.++|++++|+|+ +.+|++|+.||.|++||++++.... .......|...|++++|+|
T Consensus 195 -------~~~---~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 195 -------VLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp -------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred -------eee---eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 110 234457888999999999 8999999999999999998864221 1122245788999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++.+|++|+.||.|++|+..++.
T Consensus 265 ------dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 265 ------SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ------TTCCEEEECSSSCEECCBCCSSS
T ss_pred ------CCCEEEEEcCCCEEEEEecCCCC
Confidence 59999999999999999998644
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-24 Score=244.99 Aligned_cols=229 Identities=7% Similarity=-0.012 Sum_probs=153.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEE--EEeeCC-CeEEEec-CCcEEEeccCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAM--KLITGN-SFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~--~fs~~~-~~l~~~~-d~~i~~w~~~~ 222 (826)
.+++++.+|.+.+||... .......+..|...|+++ .|++++ ..+++++ |+++++|+...
T Consensus 279 ~lasgs~DgtV~lWD~~~----------------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTD----------------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp EEEEEETTSEEEEEETTB----------------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred eEEEEeCCCEEEEEECCC----------------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 356667778899999865 111123468899999999 567777 7889988 99999998654
Q ss_pred CceeecccccCC--ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 223 PPLLDFETKLKD--GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 223 ~~~~~~~~~h~g--~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
........+|.. .|.+ |+|+++.+++++.|++|++||+..... +. .+..|...|++|+|+|++++|
T Consensus 343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~~--------~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--VH--------PLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC--CE--------EEEECSSCEEEEECCSSCCBC
T ss_pred CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc--ce--------eeecCCCceEEEEeCCCCCeE
Confidence 322211134543 3655 999999999999999999999944331 11 234688999999999999999
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-C
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-G 377 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~ 377 (826)
++|+.||+|++||+....... ... .........|.+++|+|++..+. .. | .+.+|+.. +
T Consensus 413 ~Sgs~Dgtv~lwd~~~~~~~~------------~~~-----~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~~~~~~~~~~ 472 (524)
T 2j04_B 413 LAGSADGSLIITNAARRLLHG------------IKN-----SSATQKSLRLWKWDYSIKDDKYR-ID-S-SYEVYPLTVN 472 (524)
T ss_dssp EEEETTTEEECCBSCSSTTTC------------C-----------CCCCEEEECBCCSSSCEEE-EC-C-CCCCCC----
T ss_pred EEEECCCEEEEEechHhhccc------------ccc-----CccceeeeEEEEeccCCCCCeEE-cc-C-CceecccccC
Confidence 999999999999986432110 000 00000122477899999998542 22 2 23455443 3
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.++.. ..+|..+|.+++|+|. +..+.++++|+.||.|+||++.
T Consensus 473 g~~~~~---l~gh~~~V~~Vafsp~---~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 473 DVSKAK---IDAHGINITCTKWNET---SAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ------------CCCSCCCEEECCS---TTTTTEEEEECTTSEEEEEECS
T ss_pred Ccceee---ecCCCceEEEEECCCC---CCccHHHHhhccCceEEEEEcc
Confidence 444422 2478899999999993 1114599999999999999987
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-22 Score=225.03 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=167.5
Q ss_pred ecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccC--CC-ceeecc-cccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 188 MPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKS--VP-PLLDFE-TKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~--~~-~~~~~~-~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.+.|...|++++|+|+++.| ++++ |+.|++|+.. .. ....+. ..|...|.+ |+|++++|++|+.||.|++||
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 46788899999999999996 7787 9999999765 33 333331 256788888 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT---SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~---~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
+..... .. .....+..|...|++++|+|+ +++|++|+.|++|++||++.+...
T Consensus 178 ~~~~~~-----~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------------ 233 (450)
T 2vdu_B 178 INSIPE-----EK-FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------------------ 233 (450)
T ss_dssp TTSCCC-----SS-CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------------------
T ss_pred cCCccc-----cc-ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------------------
Confidence 943321 00 001234578899999999999 999999999999999999854331
Q ss_pred EEEEE-EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------------------CCCCC
Q 003360 337 IHSVK-VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------------------DISSG 393 (826)
Q Consensus 337 ~~~~~-~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------------------~~~~~ 393 (826)
.. ...|.+.|++++|+ ++.+|++|+.||+|+|||+++++++....... .....
T Consensus 234 ---~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 234 ---DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp ---EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred ---eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 12 23567889999999 99999999999999999999999886654321 23457
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEEC--CCC---ceEEeeec
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDS--DNG---NMLSTNLI 437 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~--~tg---~~i~~~~~ 437 (826)
|.++.|.+ ++.+|++++ .|+.|++|++ .++ +.+..+..
T Consensus 310 v~~i~~~~------~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 310 VSKIIKSK------NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEEECS------SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred EEEEEEeC------CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 89999998 589999998 8999999999 555 45555433
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=240.76 Aligned_cols=226 Identities=8% Similarity=0.044 Sum_probs=169.1
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC------CCeEEEec-CCcEEEeccC
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG------NSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~------~~~l~~~~-d~~i~~w~~~ 221 (826)
...+.+|.|.+||...- . ........+..|.+.|+.++|+|+ +..|++++ |++|++|+..
T Consensus 177 aS~s~D~tI~iWd~~~~-------~------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTS-------T------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp -----CEEEEEEEEETT-------T------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred ccCCCCceEEEEEccCC-------C------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 34556788999987541 0 001112345677889999999997 56889888 9999999754
Q ss_pred CCc------------eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 222 VPP------------LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 222 ~~~------------~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
... ...+ .+|.+.|.+ |+++ ..|++|+.||+|++||+..... + ...+..|...|+
T Consensus 244 ~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-~--------~~~~~~H~~~V~ 312 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-P--------SFYDQVHDSYIL 312 (524)
T ss_dssp CCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS-C--------SEEEECSSSCEE
T ss_pred CCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC-c--------eEEeecccccEE
Confidence 321 1122 568889988 8875 4899999999999999953321 1 111347889999
Q ss_pred EE--EEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-c-CCeEEEEEccCCCEEE
Q 003360 288 AL--YYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-N-GSIISLNMNRNSQHLA 362 (826)
Q Consensus 288 ~l--~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~-~~V~~l~~s~~g~~la 362 (826)
+| +|+|++ .+||+|+.||+|+|||++..... .....+ . ..|.+++|+|++..++
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~---------------------~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT---------------------KTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH---------------------CEEEEECSCCSCCCEEEETTTTEEE
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc---------------------cccccccccCcccceEeCCCcCeEE
Confidence 99 578887 89999999999999999843221 011112 2 3588999999999999
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+|+.|++|++||++.+.++.++. +|..+|++++|+| ++.+|++|+.|++|++||...
T Consensus 372 s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp------~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSR------LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCS------SCCBCEEEETTTEEECCBSCS
T ss_pred EeCCCCcEEEEECcccccceeee---cCCCceEEEEeCC------CCCeEEEEECCCEEEEEechH
Confidence 99999999999999988775443 6899999999999 589999999999999999874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=222.49 Aligned_cols=301 Identities=10% Similarity=0.122 Sum_probs=202.2
Q ss_pred cccccccccceEEEecCCC---CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 7 QSVYHETKQVTSACWACPI---GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~---g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
+....|...|++++|. |+ |.+||+|+.||.|++||+.+... .+.. ....+..+|..+.|..
T Consensus 33 ~~~~~h~~~v~~~~~~-~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~---~~~~h~~~v~~~~~~~- 96 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFS-PPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPK---AQQMHTGPVLDVCWSD- 96 (368)
T ss_dssp ECSSCCSSCEEEEEEC-CTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEE---EEEECSSCEEEEEECT-
T ss_pred EeccCCCCceEEEEEc-CCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEE---EeccccCCEEEEEECc-
Confidence 3445578899999995 67 79999999999999999887200 0000 0011233455554432
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+ ...+++++.+|.+.+||..
T Consensus 97 ---~---------------------------------------------------------~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 97 ---D---------------------------------------------------------GSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp ---T---------------------------------------------------------SSEEEEEETTSEEEEEETT
T ss_pred ---C---------------------------------------------------------CCEEEEEcCCCcEEEEEcC
Confidence 1 1344556667788888876
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEE--eeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL--ITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f--s~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s 240 (826)
.- ....+..|...|++++| ++++..+++++ |+.+++|+......... ......+.+..
T Consensus 117 ~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~ 177 (368)
T 3mmy_A 117 SN------------------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPERCYCAD 177 (368)
T ss_dssp TT------------------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECSSCEEEEE
T ss_pred CC------------------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecCCCceEEE
Confidence 51 12335679999999999 88999999988 99999997654333222 12233444444
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE----EEEEeCCCcEEEEEeCCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV----LVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~----Lasgs~dg~V~iwd~~~~~ 316 (826)
.....+++++.|+.+++||+..... ....+. ..+...+.++++.++... +++|+.||.|++|+++...
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPS-EFRRIE-------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCE-EEEECC-------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred ecCCeeEEEeCCCcEEEEEeccccc-hhhhcc-------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 4456899999999999999954432 111111 123356677777766554 9999999999999998542
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
... .+..+......... .....+..+|++++|+|++.+|++|+.||.|++||+.+++++... ..|..+|.+
T Consensus 250 ~~~--~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 320 (368)
T 3mmy_A 250 PAK--DNFTFKCHRSNGTN----TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---EQLDQPISA 320 (368)
T ss_dssp HHH--HSEEEECSEEC--------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEEE
T ss_pred ccc--cceeeeeeeccccc----ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---cCCCCCceE
Confidence 200 01111100000000 111122347999999999999999999999999999999988544 378889999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++|+| ++.+|++++.|+..+.|+
T Consensus 321 ~~~s~------~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 321 CCFNH------NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEECT------TSSCEEEEECCCSTTCGG
T ss_pred EEECC------CCCeEEEEeccccccccc
Confidence 99999 699999999988554444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=223.82 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=181.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~ 223 (826)
..+++++.+|.+++||.... .....+.........+..|...|++++|++++. .+++++ |+.|++|+....
T Consensus 142 ~~lat~~~dg~V~vwd~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKH-------PSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGS-------CSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred cEEEEECCCCcEEEEECCCc-------ccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 45677788999999998651 111111111233456789999999999999998 888888 999999975441
Q ss_pred ----ce---eecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEe
Q 003360 224 ----PL---LDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ----~~---~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
.. .....+|.+.|.+ |+| ++.+|++|+.||.|++||+... ...++. .+..|...|++++|+
T Consensus 215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH--------TVDAHTAEVNCLSFN 286 (430)
T ss_dssp CBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE--------EEECCSSCEEEEEEC
T ss_pred CCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee--------EeecCCCCeEEEEeC
Confidence 11 1112578999988 998 7789999999999999999433 111111 224678899999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeE
Q 003360 293 GTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYV 370 (826)
Q Consensus 293 p~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V 370 (826)
|++. +|++|+.||.|++||++..... . ..+..|...|++++|+|++. +|++|+.||.|
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~---------------~-----~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLK---------------L-----HSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSC---------------S-----EEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCC---------------e-----EEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 9987 7999999999999999853211 1 33445788999999999985 69999999999
Q ss_pred EEEecCC--------------CeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEECCCcEEEEECCCC
Q 003360 371 YLLDTEG--------------PTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 371 ~vwD~~~--------------~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs~Dg~V~iwd~~tg 429 (826)
+|||+.. +.+++.. .+|...|++++|+| ++. +|++++.||.|++|++..+
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p------~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIH---GGHTAKISDFSWNP------NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEEC---CCCSSCEEEEEECS------SSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEc---CCCCCCceEEEECC------CCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 3444332 47888999999999 466 8999999999999998743
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-22 Score=213.20 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=167.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----ceeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
+..|...|++++|+|+++++++++ |+.|++|+.... .......+|.+.|.+ |+| ++++|++|+.||+|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 578999999999999999999998 999999975532 122223579999999 888 69999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+....... ..........+..|...|++++|+|+ +.+|++|+.||.|++||++.......-..........
T Consensus 87 d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----- 160 (351)
T 3f3f_A 87 EEDPDQEEC-SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS----- 160 (351)
T ss_dssp EECTTSCTT-SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS-----
T ss_pred ecCCCcccc-cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc-----
Confidence 994432100 00000001123467889999999999 9999999999999999998765432111100000000
Q ss_pred EEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC----
Q 003360 337 IHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK---- 409 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~---- 409 (826)
.....+...|.+++|+|+ +.++++|+.|+.+.+|+...+...... ...+|..+|++++|+| ++
T Consensus 161 ---~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~p------~~~~~~ 230 (351)
T 3f3f_A 161 ---IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAP------SIGRWY 230 (351)
T ss_dssp ---CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-ECCCCCSCEEEEEECC------CSSCSS
T ss_pred ---cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-ecCCCCcceeEEEECC------CCCCcc
Confidence 111234667999999997 899999999999988888777653222 2347889999999999 45
Q ss_pred cEEEEEECCCcEEEEECCCCce
Q 003360 410 NFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.+|++|+.||.|++||+.++..
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC-
T ss_pred eEEEEEcCCCeEEEEeCCCCcC
Confidence 7999999999999999987643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=227.39 Aligned_cols=225 Identities=13% Similarity=0.175 Sum_probs=164.5
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc------------eeecccccC------------Cccee--eCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP------------LLDFETKLK------------DGSQS--HSKV 242 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~------------~~~~~~~h~------------g~V~~--~s~~ 242 (826)
.|...|++++|+|++.++++|+ |+.|++|+..... ...+ .+|. +.|.+ |+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 3568999999999999999998 9999999755332 2233 5787 88988 9999
Q ss_pred C--CEEEEEECCCcEEEEeCCCCcee-eeeeccc----------------------------ccccc-cccCCCCeEEEE
Q 003360 243 K--NLFITGHSDGAINFWDVSCPLFL-LILSLKQ----------------------------QSEKD-FSLSGIPLTALY 290 (826)
Q Consensus 243 ~--~~l~Tgs~DGtVriWD~s~~~~~-~i~~l~~----------------------------~~~~~-~~~h~~~V~~l~ 290 (826)
+ .+|++|+.||+|++||+...... ..+.+.. ..... ...|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999998432210 0000000 00001 246889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCe
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~ 369 (826)
|+|++.+|++| .||.|++||++.... .+..+...+ .....|...|++++|+|++ .+|++|+.||.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~---------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKP---------ANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCC---------SSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeeccc---------ccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 99999999999 899999999973211 000000000 0123467789999999998 99999999999
Q ss_pred EEEEecCCCee----EEeeecccCCCC------------CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 370 VYLLDTEGPTV----LYQKHIASDISS------------GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 370 V~vwD~~~~~~----l~~~~~~~~~~~------------~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
|++||++++.. +..+ ..|.. .|.+++|+| ++.+|++++. +.|++||+.+ ++++
T Consensus 251 i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSH------SGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTTCSSSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECT------TSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred EEEEECcCCccccceeeEe---ccCCCccccccccccCceEEEEEECC------CCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 99999998875 3222 24443 899999999 5999999998 9999999997 7777
Q ss_pred EeeeccC
Q 003360 433 STNLIHP 439 (826)
Q Consensus 433 ~~~~~~~ 439 (826)
.++..|.
T Consensus 321 ~~~~~~~ 327 (447)
T 3dw8_B 321 ETYQVHE 327 (447)
T ss_dssp CCEESCG
T ss_pred ceeeccc
Confidence 7765553
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-22 Score=215.06 Aligned_cols=286 Identities=15% Similarity=0.147 Sum_probs=202.6
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDV 260 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~ 260 (826)
..|...|++++|+|++..+++++ |+.|++|+..... .... .+|.+.|.+ |+|+++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 57899999999999999999988 9999999765433 3333 579999988 999999 9999999999999999
Q ss_pred -CCCceeeeeeccccccccccc--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSL--SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~--h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
..... . .+.. |...|++++|+| +..|++|+.||.|++||++...... .. . .+..
T Consensus 87 ~~~~~~---~--------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~----~~~~--- 143 (342)
T 1yfq_A 87 IGSPSF---Q--------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV---IA-V----KNLN--- 143 (342)
T ss_dssp SSSSSE---E--------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC---EE-E----EESC---
T ss_pred ccCCce---E--------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc---cc-c----cCCe---
Confidence 76652 1 1235 888999999999 9999999999999999987410000 00 0 0000
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEee-cccCCCCCcEEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFET-CSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~-~~~~~~d~~~l~sg 415 (826)
+....+...|++++|++++ +++|+.||.|++||+++ +...... ....+...|.++.|++ . +.+++++
T Consensus 144 --~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~------~~~l~~~ 212 (342)
T 1yfq_A 144 --SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKE------QEGYACS 212 (342)
T ss_dssp --SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGG------GCEEEEE
T ss_pred --eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCC------CCEEEEE
Confidence 1122357789999999987 99999999999999988 5432111 1236778999999998 5 8899999
Q ss_pred ECCCcEEEEECCCC------ceEEeeeccCCC------CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 416 TKDSSVLVLDSDNG------NMLSTNLIHPKK------PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 416 s~Dg~V~iwd~~tg------~~i~~~~~~~~~------~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
+.||.|++|+...+ +.+..+..|... ...+.++. +.+++.
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------------~s~~~~ 264 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE----------------------------FSPRHK 264 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE----------------------------ECTTTC
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE----------------------------EcCCCC
Confidence 99999999999876 666666555431 11233332 233444
Q ss_pred EEEEe-ecCcEEEEeccccccccceeeeeeecC-CCCceeeEeeeeCCceEEEEEEeece-EEEec
Q 003360 484 FVLLC-SEKAACAYSLSHAVQGVKKVLYKKKFH-SSSCCWASTFYSGSDVGLMLLFTSGK-FEIRS 546 (826)
Q Consensus 484 ~vv~~-se~~irv~sl~~~~~g~~k~~~k~~~~-~~~c~~~~~~~~~~~~~lv~~~~~G~-I~i~s 546 (826)
+++++ .++.|++|++. ..+.+...... .... ..+. +.+..|+....+|. .+.+.
T Consensus 265 ~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~h~~~v---~~~~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQ-----TRKKIKNFAKFNEDSV---VKIA-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEETTSCEEEEETT-----TTEEEEECCCCSSSEE---EEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEecCCceEEEEcCc-----cHhHhhhhhcccCCCc---eEec-CCCCeEEEEecCCccccccc
Confidence 55554 45699999997 33344433221 1111 1111 45667788888887 44443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=229.17 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=178.1
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC-----
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP----- 223 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~----- 223 (826)
.+.+|.+.+||..... . .......+..|...|++++|+| ++..+++++ |+.|++|+....
T Consensus 53 ~~~~g~i~v~~~~~~~------~-------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTG------R-------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp CSSSCCEEEEETTCCE------E-------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EcCCCEEEEEECccCC------C-------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 4668999999975410 0 0011223578999999999999 899999998 999999975543
Q ss_pred ---ceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 ---PLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ---~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
....+ .+|.+.|.+ |+|++ ++|++|+.||+|++||+..... +..+. ...|...|++++|+|++.+
T Consensus 120 ~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~------~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 120 LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLG------PDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE--EEEEC------TTTCCSCEEEEEECTTSSC
T ss_pred cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc--cEEEe------cCCCCCceEEEEECCCCCE
Confidence 23333 679999998 99998 6999999999999999955442 22221 0357889999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCC-eEEEEEccCCCEEEEE---ecCCeEEE
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGS-IISLNMNRNSQHLAVG---SDQGYVYL 372 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~-V~~l~~s~~g~~lasG---s~dG~V~v 372 (826)
|++|+.||.|++||++.+.. . ... ..|.+. +.+++|+|++.+|++| +.||.|++
T Consensus 191 l~~~~~d~~i~iwd~~~~~~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTV-----------------V----AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp EEEEETTSEEEEEETTTTEE-----------------E----EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred EEEEecCCcEEEEeCCCCce-----------------e----eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 99999999999999984322 1 122 234444 8999999999999999 79999999
Q ss_pred EecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEE-EECCCcEEEEECCCCce-EEee
Q 003360 373 LDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI-ATKDSSVLVLDSDNGNM-LSTN 435 (826)
Q Consensus 373 wD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s-gs~Dg~V~iwd~~tg~~-i~~~ 435 (826)
||++++.. +.... ..+...|.++.|++ ++.+|++ |+.|+.|++||..+++. +..+
T Consensus 250 wd~~~~~~~~~~~~--~~~~~~v~~~~~s~------~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 250 WDTKHLEEPLSLQE--LDTSSGVLLPFFDP------DTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp EETTBCSSCSEEEE--CCCCSSCEEEEEET------TTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred EcCccccCCceEEe--ccCCCceeEEEEcC------CCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 99988764 22222 24667899999999 5888865 55799999999998873 4444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=221.00 Aligned_cols=228 Identities=14% Similarity=0.156 Sum_probs=153.4
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC--cee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP--PLL 226 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~--~~~ 226 (826)
++.+.++.+.+||..+- .....+. |...|.+++++++ .++++.++.+++|+.... .+.
T Consensus 75 ~~~~~d~~v~iWd~~~~-----------------~~~~~~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKK-----------------QDVSRIK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp EECSSTTEEEEEETTTT-----------------EEEEEEE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS
T ss_pred EEECCccEEEEEECCCC-----------------cEEEEEE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE
Confidence 34455568888987651 0112233 5668999998865 455666899999976543 222
Q ss_pred ecccccCCcceeeCCCCCEEEE--EECCCcEEEEeCCCCc-eee----eeeccccc-ccccccCCCCeEEEEEeCCCCEE
Q 003360 227 DFETKLKDGSQSHSKVKNLFIT--GHSDGAINFWDVSCPL-FLL----ILSLKQQS-EKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~T--gs~DGtVriWD~s~~~-~~~----i~~l~~~~-~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
.+.. ..++.++++ .+++. |+.||+|++||+.... ... ........ ...+..|..+|++++|+|++.+|
T Consensus 135 ~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 135 DDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp CCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred Eecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 2211 233333666 56665 6899999999994322 000 00000000 22345788999999999999999
Q ss_pred EEEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe---eccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 299 VSGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM---KINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 299 asgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~---~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
++|+.||+ |+|||++++.. +... .|.+.|++++|+|+|.+|++|+.||+|+|||
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~----------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVL----------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEETTCSEEEEEETTTCCE----------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCcE----------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 99999998 99999985433 2222 2788999999999999999999999999999
Q ss_pred cCCCeeEE--------------------eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 375 TEGPTVLY--------------------QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 375 ~~~~~~l~--------------------~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++.+.... ..........+...++|++ |+.+|++++.||.+++|+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS------ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS------SSEEEEEETTTTEEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC------CCCEEEEEeCCCeEEEEEEEc
Confidence 97653210 0111112223346688888 689999999999999998764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=225.23 Aligned_cols=211 Identities=8% Similarity=0.041 Sum_probs=161.6
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeecc--cccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDFE--TKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~~--~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
...+..|...|++++|+|++ ..+++++ |+.|++|+.......... ..|.+.|.+ |+|++++|++|+.||+|++|
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 34567899999999999998 5888888 999999986654443332 568999988 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|+..... +..+. ..|.. .+.++.|+|++.+|++| +.|+.|++||++.....
T Consensus 204 d~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~---------------- 258 (402)
T 2aq5_A 204 EPRKGTV--VAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP---------------- 258 (402)
T ss_dssp ETTTTEE--EEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----------------
T ss_pred eCCCCce--eeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----------------
Confidence 9955442 22221 24544 48999999999999999 79999999999854321
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEE-EEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLA-VGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~la-sGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. .....+...|.+++|+|++.+|+ +|+.||.|++||+.+++. +..... ..+..+|.+++|+| ++.++
T Consensus 259 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp------~~~~~ 328 (402)
T 2aq5_A 259 LS---LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMP------KRGLE 328 (402)
T ss_dssp SE---EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECC------GGGSC
T ss_pred ce---EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEec------ccccc
Confidence 00 22334567799999999999986 566899999999998873 322222 23678999999999 46665
Q ss_pred EEEECCCcEEEEECCCCceE
Q 003360 413 VIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i 432 (826)
+ +.++.+++|++.++.+.
T Consensus 329 ~--s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 329 V--NKCEIARFYKLHERKCE 346 (402)
T ss_dssp G--GGTEEEEEEEEETTEEE
T ss_pred e--ecceeEEEEEcCCCcEE
Confidence 4 46779999999977643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=219.61 Aligned_cols=224 Identities=12% Similarity=0.170 Sum_probs=177.1
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.|.+||..+. .....+..|...|++++| ++..+++|+ |+.|++|+....
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-----------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-----------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-----------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCC-----------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 466788899999999997651 134457889999999988 788999988 999999987654
Q ss_pred ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 224 PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.......+|.+.|.+...++.++++|+.||+|++||+........ ...+..|...|++++| ++.+|++|+.
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL-------RRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE-------EEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCcee-------eeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 444333678999988333457999999999999999944331110 0112467889999999 6789999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
||.|++||++++... .....|...|.+++|+ +.++++|+.||.|++||+++++++..
T Consensus 275 dg~i~vwd~~~~~~~---------------------~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 275 DRTIKVWNTSTCEFV---------------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp TSEEEEEETTTCCEE---------------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCeEEEEECCcCcEE---------------------EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999854321 2334567889999995 67999999999999999999998855
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
. .+|...|.++.|. +.+|++|+.||.|++||..++.
T Consensus 332 ~---~~h~~~v~~~~~~--------~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 332 L---EGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp E---CCCSSCEEEEECC--------SSEEEEEETTSCEEEEEHHHHT
T ss_pred E---eCCcCcEEEEEec--------CCEEEEEeCCCcEEEEECCCCC
Confidence 5 3788899999982 7889999999999999997665
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-21 Score=206.40 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=202.7
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++++.++.|++||..+- .....+.+..|...|++++|+++++++++|+ |++|++|+.......
T Consensus 38 ~lAvg~D~tV~iWd~~tg---------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSG---------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp EEEEEETTEEEEEETTTC---------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEeCCEEEEEECCCC---------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 455667899999998661 1112334567888999999999999999999 999999987655544
Q ss_pred ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 227 DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
....+|...+.++++++.++++|+.++.+++|+...... .+. .+..|...+.++.|++++.+|++++.||+
T Consensus 103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-HVA--------TLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-EEE--------EEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce-eEE--------EEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 444678888888777889999999999999999843331 111 12467789999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE---EEEEecCCeEEEEecCCCeeEEe
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH---LAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~---lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|++||++++.... ... .....+.+.|.++++++++.. +++|+.+++|++||.........
T Consensus 174 i~iwd~~~~~~~~-------------~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 174 VNVWPSAPGEGGW-------------VPL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp EEEEESSCBTTBS-------------CCS----EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred eeEEECCCCcccc-------------cce----eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 9999998654321 000 233445778999999987653 34677899999999998887643
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
. .+...+..+.|.+. +..+++++ .|+.|++||..+++++.++.+|.. .+.++.+
T Consensus 237 ~----~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~---~V~~l~~----------- 292 (318)
T 4ggc_A 237 V----DAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS---RVLSLTM----------- 292 (318)
T ss_dssp E----ECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS---CEEEEEE-----------
T ss_pred c----cceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC---CEEEEEE-----------
Confidence 3 45667999999984 66666654 799999999999999999876643 3444443
Q ss_pred cccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEecc
Q 003360 462 NLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLS 499 (826)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~ 499 (826)
++++.+++.+ .|+.||||++.
T Consensus 293 -----------------spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 293 -----------------SPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp -----------------CTTSSCEEEEETTTEEEEECCS
T ss_pred -----------------cCCCCEEEEEecCCeEEEEECC
Confidence 3344455555 45689999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=217.28 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=145.3
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..|...|++++|+| ++.++++++ |+.+++|+......... ...|...+.+ |+|++.+|++|+.||+|+|||+..
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 35678899999999 999999988 99999998665444333 2345667877 999999999999999999999954
Q ss_pred Cceeeeeeccccccccccc-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSL-SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~-h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... .. .+.. |..+|++|+|+|++.+|++|+ |+.|++||++....... +. .
T Consensus 202 ~~~~-~~--------~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~---------~------- 253 (343)
T 3lrv_A 202 PDQA-SS--------RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YP---------T------- 253 (343)
T ss_dssp TTSC-CE--------ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SC---------C-------
T ss_pred CCCC-cc--------EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--ec---------c-------
Confidence 4320 01 1234 889999999999999999999 55999999986643210 00 0
Q ss_pred EeeccCCe--EEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 342 VMKINGSI--ISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 342 ~~~~~~~V--~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
+..+...+ .+++|+|+|.+|++|+. |+.|+||++......+.. .++..+.|.+. ..+...+++++.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~l~~~~~d 323 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSD---TADFTDMDVVCGD 323 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC-------CCCCEEEEEEET
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCcc---ccccceeEEEecC
Confidence 00011112 57999999999999998 999999999766544222 35666777762 1146789999999
Q ss_pred CcEEEEECC
Q 003360 419 SSVLVLDSD 427 (826)
Q Consensus 419 g~V~iwd~~ 427 (826)
+.+.++-..
T Consensus 324 ~~~~~~~~~ 332 (343)
T 3lrv_A 324 GGIAAILKT 332 (343)
T ss_dssp TEEEEEEEC
T ss_pred CceEEEEec
Confidence 999888654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=212.70 Aligned_cols=290 Identities=12% Similarity=0.115 Sum_probs=190.9
Q ss_pred CCCEEEEEEeeCCCeEEEec-CC-------cEEEeccCCCce---------eec-ccccCCcceeeCCCCCEEEEEE---
Q 003360 192 DSSITAMKLITGNSFILSSA-DE-------DYSLLAKSVPPL---------LDF-ETKLKDGSQSHSKVKNLFITGH--- 250 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~-------~i~~w~~~~~~~---------~~~-~~~h~g~V~~~s~~~~~l~Tgs--- 250 (826)
.-||.+++|+|+++.|++|+ +. .|++|+...... ..+ ..+|...|.+++++++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 34799999999999999976 33 489996432111 001 2456777777777778887764
Q ss_pred --------CCCcEEEEeCC-CC-ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCc
Q 003360 251 --------SDGAINFWDVS-CP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 251 --------~DGtVriWD~s-~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~ 318 (826)
.|+++|+|++. .. ....+.... ......+...|.+++|+||+++|+++ +.|++|+|||+.+...
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~- 169 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVD---FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE- 169 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC---SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeec---eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-
Confidence 57789999983 22 221111111 11122344679999999999988754 4789999999984322
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
+....+.+.|++|+|+|+|+++++++.++ +++|+..++..+... ....|...|.+++
T Consensus 170 ---------------------~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 170 ---------------------KFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK-TDFDKNWSLSKIN 226 (365)
T ss_dssp ---------------------EEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE-CCCCTTEEEEEEE
T ss_pred ---------------------EEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee-ecCCCCCCEEEEE
Confidence 33445778899999999999999999765 566666666655332 2346788999999
Q ss_pred EeecccCCCCCcEEEEEECCC----cEEEEECCCCceEEeeec-cCCCCCcceEEEEecCCCCcccCccccccccccCCC
Q 003360 399 FETCSLQGFEKNFLVIATKDS----SVLVLDSDNGNMLSTNLI-HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~tg~~i~~~~~-~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (826)
|+| ++.++++++.|+ .+++|+...+........ .......+.++.
T Consensus 227 fsp------dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------ 276 (365)
T 4h5i_A 227 FIA------DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD------------------------ 276 (365)
T ss_dssp EEE------TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE------------------------
T ss_pred EcC------CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEE------------------------
Confidence 999 699999999887 688899876653221100 011112223332
Q ss_pred CCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeee-ecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCC
Q 003360 474 PKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKK-KFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 474 ~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~-~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~ 549 (826)
++|++.++++++ |+.|+||++. ..+.+... +.+ ...+. ++.-++.+..|+....||.|+|+.+|.
T Consensus 277 ----~Spdg~~lasgs~D~~V~iwd~~-----~~~~~~~~~~gH-~~~V~-~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 277 ----VDMKGELAVLASNDNSIALVKLK-----DLSMSKIFKQAH-SFAIT-EVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ----ECTTSCEEEEEETTSCEEEEETT-----TTEEEEEETTSS-SSCEE-EEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ----ECCCCCceEEEcCCCEEEEEECC-----CCcEEEEecCcc-cCCEE-EEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 345556666655 5689999997 33444432 222 11111 111127788999999999999999984
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-21 Score=217.79 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=164.5
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCc---e-eecc---------------------------------------
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPP---L-LDFE--------------------------------------- 229 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~---~-~~~~--------------------------------------- 229 (826)
.++++++|+++|++++++.++.|.+|+..... . ..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46889999999998777778899999744333 1 1110
Q ss_pred --------------cccCCccee--eCCCCCEE-EEEECCCcEEEEeCC--CCceeeeeecccccccccccCCCCeEEEE
Q 003360 230 --------------TKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 230 --------------~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
.+|.+.|.+ |+|++++| ++|+.||+|+|||+. .... +..+.. ..|...|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~------~~~~~~v~~~~ 156 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR------FCFSKRPNAIS 156 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE------EECSSCEEEEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec------ccCCCCceEEE
Confidence 134456888 99999986 999999999999996 4432 122220 14567999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecC
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQ 367 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~d 367 (826)
|+|++.+|++|+.+|.|++|++....... ... ..+..|.+.|++++|+|+ +.+|++|+.|
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~-------------~~~----~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEK-------------FTQ----EPILGHVSMLTDVHLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSS-------------CCC----CCSEECSSCEEEEEEEECTTSCEEEEEEETT
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCccccc-------------ccc----eeeecccCceEEEEEcCCCCCCcEEEEEcCC
Confidence 99999999999999999999997553310 000 122346788999999999 9999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
|+|++||++++.++... ..+|...|.+++|+ . +.+|++|+.|++|++||+.+|+++..+..
T Consensus 220 ~~i~vwd~~~~~~~~~~--~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKW--LFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp SCEEEEEESCTTCEEEE--CCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECCCCceeeee--ecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 99999999999877442 35788999999998 4 89999999999999999999998887653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=240.46 Aligned_cols=211 Identities=11% Similarity=0.166 Sum_probs=167.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
.+..|...|++++|+|+++.+++++ |+.|++|+.. .........+|.+.|.+ |+++ +++|++|+.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 3578999999999999999999998 9999999754 22222223679999999 8887 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.......+.. +..|...|++++|+|+ +..|++|+.||.|++||++..... ..
T Consensus 84 ~~~~~~~~~~~--------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------------~~--- 138 (753)
T 3jro_A 84 EENGRWSQIAV--------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------------SP--- 138 (753)
T ss_dssp EETTEEEEEEE--------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC--------------CC---
T ss_pred CCCCccccccc--------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc--------------ce---
Confidence 95443222222 2467889999999999 999999999999999999854221 01
Q ss_pred EEEEEeeccCCeEEEEEcc-------------CCCEEEEEecCCeEEEEecCCCeeEE-eeecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNR-------------NSQHLAVGSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~-------------~g~~lasGs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....|...|++++|+| ++.++++|+.||+|++||++++.... ......+|..+|++++|+|
T Consensus 139 --~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 214 (753)
T 3jro_A 139 --IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-- 214 (753)
T ss_dssp --EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--
T ss_pred --eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc--
Confidence 33455678899999999 58999999999999999998874221 1122347889999999999
Q ss_pred cCCCC---CcEEEEEECCCcEEEEECCCCc
Q 003360 404 LQGFE---KNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 404 ~~~~d---~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+ +.+|++|+.||.|++||..++.
T Consensus 215 ----~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 215 ----TVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ----CCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ----CCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5 7899999999999999999764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-22 Score=223.26 Aligned_cols=303 Identities=11% Similarity=0.048 Sum_probs=201.3
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
...|.+++|+|||+.+++++ |++|+ +...+ ..+ .+|.+.|.+ |+|+| .|+++++|+..+...
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~--- 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--KDI-NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL--- 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC--SCC-SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc--cee-cCCCccEEEEEECCCC-------CcceEEEEeCCCceE---
Confidence 36788999999999999999 99999 43322 222 689999999 99999 677777777654431
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING- 347 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~- 347 (826)
+. ..|...|++++|+|++..||+++.||.|++||... . +....++.
T Consensus 80 --~~-------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------~-----l~~l~~~~~ 126 (588)
T 2j04_A 80 --LN-------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------M-----LTNLDSKGN 126 (588)
T ss_dssp --ST-------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------E-----EEECCCSSC
T ss_pred --ee-------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------e-----eeeccCCCc
Confidence 11 12467899999999999999999999999999541 1 22222333
Q ss_pred ----CeEEEEEccCCCEEEEEecCCeEEEEecCCCee-------EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 348 ----SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-------LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 348 ----~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-------l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.|.+++|||+|++||+|+.||+|+|||+.++.+ +.+... ..+|...|.+++|+| |+ ++++
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP------dg--Laas 198 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE------DV--LVAA 198 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET------TE--EEEE
T ss_pred cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC------Cc--EEEE
Confidence 499999999999999999999999999998753 322211 146788999999999 46 8899
Q ss_pred ECCCcEEEEECCCCceE---Eeee-ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC
Q 003360 416 TKDSSVLVLDSDNGNML---STNL-IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 491 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i---~~~~-~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~ 491 (826)
+.|++|++||..++... .++. .|. ..+.++.+. +.++++++++
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs------------------------------g~~LASa~~~ 245 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV------------------------------DYKVVLTCPG 245 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE------------------------------TTEEEEECSS
T ss_pred eCCCeEEEEECCCCccccceeeeccccc---CcEEEEEEE------------------------------CCEEEEEeCC
Confidence 99999999999877632 3331 221 223333222 2466777789
Q ss_pred cEEEEeccccccccceeeeeeecCCCCceeeEee-eeCCceEEEEEEeeceEEEeccCC------ccccccc--ccccee
Q 003360 492 AACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTF-YSGSDVGLMLLFTSGKFEIRSLPE------LSLLKET--SIRGFV 562 (826)
Q Consensus 492 ~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~-~~~~~~~lv~~~~~G~I~i~slP~------L~~l~~~--sl~~~~ 562 (826)
.|++|++.. .+....+.. + ..-++...+ .++.+..+++.+.+|. +++.+.. ...+... .+.-|+
T Consensus 246 tIkLWd~~~----~~~~~~~~g-h-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~ 318 (588)
T 2j04_A 246 YVHKIDLKN----YSISSLKTG-S-LENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS 318 (588)
T ss_dssp EEEEEETTT----TEEEEEECS-C-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred eEEEEECCC----CeEEEEEcC-C-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence 999999873 221122221 2 111122222 1366677888888999 8887642 2222211 111222
Q ss_pred ecCCCC---C-CCcccceeccCCCcEEEEcCC
Q 003360 563 YLTPKP---N-SLSNTLMCSSWDGELIMVNGN 590 (826)
Q Consensus 563 ~~~~~~---~-~~~~~~~~~s~~G~i~~~~g~ 590 (826)
...... + ......+++|+||++++..+.
T Consensus 319 ~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 319 TIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 210000 0 112355789999998776653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=215.64 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=165.5
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
+...++.++.+|.+.+||...- . ....+. ...|.++.++|. +++++ |+++++|+...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~-------~----------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS-------K----------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS-------S----------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred CCCEEEEECCCCcEEEEECCCC-------c----------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 3456788899999999998651 0 111111 345666777777 77877 99999995442
Q ss_pred ---------Cc-eeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEE
Q 003360 223 ---------PP-LLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 223 ---------~~-~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.. +.....+|.+.|.+ ++| +++++++|+.||+|++||+...... .... ..|...|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~-------~~~~~~i~~ 175 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY--IVHS-------AKSDVEYSS 175 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE--EEEC-------CCSSCCCCE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe-------cCCCCceEE
Confidence 12 22334467788888 999 9999999999999999999544421 1111 124467999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEecC
Q 003360 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 289 l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs~d 367 (826)
++|+|++.+|++|+.||.|++||++++.... ..+.. |.++|++++|+|+|.+|++|++
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~--------------------~~~~~~h~~~v~~l~fs~~g~~l~s~~~- 234 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQAS--------------------SRFPVDEEAKIKEVKFADNGYWMVVECD- 234 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSCC--------------------EECCCCTTSCEEEEEECTTSSEEEEEES-
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCCc--------------------cEEeccCCCCEEEEEEeCCCCEEEEEeC-
Confidence 9999999999999999999999998654310 12233 6889999999999999999994
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCee--EEEEeecccCCCCCcEEEEEEC-CCcEEEEECCCCc
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIV--SLQFETCSLQGFEKNFLVIATK-DSSVLVLDSDNGN 430 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~--sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~tg~ 430 (826)
+.|++||++++..+........+...+. +++|+| ++.+|++++. |+.|++|+..++.
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD------SGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT------TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECC------CCCEEEEecCCCCcEEEEEEcccc
Confidence 5999999999877643332222333443 699998 5999999998 9999999987554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-22 Score=222.77 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=153.5
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCC-----ccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKD-----GSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g-----~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
.|.+.|++++|+|+|..+++++ |+.+++|+... .+..+ . |.. .|.+ |+|+|++|++|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4478899999999999999998 99999998544 33333 3 554 4777 99999999999999999999995
Q ss_pred CCce-----eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 262 CPLF-----LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 262 ~~~~-----~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
++.+ ..+..++.. ..+|...|.+++|+|++ +++++.|++|++|++..+... ...
T Consensus 160 ~~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--------------~~~- 218 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--------------PVS- 218 (588)
T ss_dssp CCTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--------------CCE-
T ss_pred CCccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--------------cce-
Confidence 5431 122333211 13577899999999999 888999999999999854320 000
Q ss_pred EEEEEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE--eecccCCCCCcEEE
Q 003360 337 IHSVKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF--ETCSLQGFEKNFLV 413 (826)
Q Consensus 337 ~~~~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f--~~~~~~~~d~~~l~ 413 (826)
... ..|...|.+++|+ |+.||+++ +|+|++||+.++.... .. .+|.+.|..+.| ++ |+..|+
T Consensus 219 ---~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~-~~--~gh~~~V~~va~~~s~------d~~~La 283 (588)
T 2j04_A 219 ---RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISS-LK--TGSLENFHIIPLNHEK------ESTILL 283 (588)
T ss_dssp ---EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEE-EE--CSCCSCCCEEEETTCS------SCEEEE
T ss_pred ---eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEE-EE--cCCCceEEEEEeeeCC------CCCEEE
Confidence 111 2456789999999 68899997 6999999999888742 22 269999999999 87 688999
Q ss_pred EEECCCcEEEEECC
Q 003360 414 IATKDSSVLVLDSD 427 (826)
Q Consensus 414 sgs~Dg~V~iwd~~ 427 (826)
++..||+ ++|...
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 9999999 999987
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-21 Score=214.87 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=164.1
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCC-----------CceeecccccCCccee--eCCCCC-EEEE
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSV-----------PPLLDFETKLKDGSQS--HSKVKN-LFIT 248 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~-----------~~~~~~~~~h~g~V~~--~s~~~~-~l~T 248 (826)
......|...|++++|+|+ +..+++++ ++.|++|+... .....+ .+|.+.|.+ |+|++. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 3445679999999999997 67888888 99999996542 223333 678888888 999988 9999
Q ss_pred EECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 249 GHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 249 gs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
|+.||+|++||+... ..... +. ....+..|...|++++|+| ++.+|++++.||.|++||++.....
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~--~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRV--ID--AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGE--EE--CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred EeCCCeEEEEeCCCCCCCCce--ec--cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 999999999999442 10000 00 0122346888999999999 6789999999999999999854210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCC-eeEEeeecccCCCCCeeEEEEeeccc
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGP-TVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~-~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
... .....|...|++++|+|++. ++++|+.||.|++||++.. ..+... ..|..+|++++|+|.
T Consensus 268 ------~~~----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~-- 332 (430)
T 2xyi_A 268 ------KPS----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH-- 332 (430)
T ss_dssp ------SCS----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSS--
T ss_pred ------cce----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCC--
Confidence 010 23346678899999999987 6899999999999999984 444333 368889999999994
Q ss_pred CCCCCcEEEEEECCCcEEEEECCC
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+..+|++++.|+.|++||+.+
T Consensus 333 ---~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 ---NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---CTTEEEEEETTSCCEEEEGGG
T ss_pred ---CCCEEEEEeCCCcEEEEeCCC
Confidence 235799999999999999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=210.63 Aligned_cols=261 Identities=11% Similarity=0.085 Sum_probs=162.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-----ecccccCCccee--eCC--------CCCEEEEEECCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-----DFETKLKDGSQS--HSK--------VKNLFITGHSDG 253 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-----~~~~~h~g~V~~--~s~--------~~~~l~Tgs~DG 253 (826)
.|.+.+....+.+++..+++++ |++|++|+....... ....+|++.|.+ |+| ++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3444555556667777889988 999999976543221 124789999999 776 789999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccc---------e
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENS---------F 323 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~---------~ 323 (826)
+|||||+..... +.. +..|..+|.+++|+|++ .+|++|+.||+|++||++++....... .
T Consensus 167 tv~~Wd~~~~~~--~~~--------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 167 TLIIWRLTDEGP--ILA--------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEEEEETTEE--EEE--------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred eEEEEECCCCce--eee--------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999943321 111 23567899999999987 489999999999999998764321100 0
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEc-cCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMN-RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
........... .....+...|.++.|+ ++|..|++++.|+++++||+..+....... .+...+..+.+.+.
T Consensus 237 ~s~~~~~~~~~-----~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 237 LTLNTLPLVNT-----CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPN 308 (393)
T ss_dssp EEEESGGGC-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCS
T ss_pred Eecccccceee-----eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccc
Confidence 01111111111 2223456779999986 799999999999999999998776552221 22222222222221
Q ss_pred c--------------cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 403 S--------------LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 403 ~--------------~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
. .+..++.++++|+.||+|++||..+++.+.....|.. .+.++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~---~V~sv-------------------- 365 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM---PIVDF-------------------- 365 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS---CEEEE--------------------
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC---cEEEE--------------------
Confidence 0 0112456777888999999999999988766544332 23333
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|++++.+|++++++.+.+|.|-
T Consensus 366 --------afspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 366 --------CWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp --------EECTTSSEEEEEESSEEEEEEEG
T ss_pred --------EEcCCCCEEEEEeCCCeEEEEEe
Confidence 35678889999999999999886
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=198.06 Aligned_cols=217 Identities=10% Similarity=0.114 Sum_probs=162.6
Q ss_pred eeeecccCCCEEEEEEeeC---CCeEEEec-CCcEEEeccCC-Ccee-ecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 185 MLKMPFLDSSITAMKLITG---NSFILSSA-DEDYSLLAKSV-PPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~---~~~l~~~~-d~~i~~w~~~~-~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
...+..|...|++++|+|+ +..+++++ |+.|++|+... .... ....+|.+.|.+ |+|++++|++|+.||+|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3446789999999999999 59999988 99999997654 2222 333679999998 999999999999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEE--eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
+||+....... +..|...|++++| +|++.+|++|+.||.|++||++.+..
T Consensus 112 iwd~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------------- 163 (368)
T 3mmy_A 112 MWDLSSNQAIQ-----------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP----------------- 163 (368)
T ss_dssp EEETTTTEEEE-----------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------------
T ss_pred EEEcCCCCcee-----------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------------
Confidence 99996555211 1357789999999 89999999999999999999985433
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+.....+..+.++.+.+. .+++++.++.+++||++.....+.. ....+...+.++.+.+.... ....+++
T Consensus 164 -----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 233 (368)
T 3mmy_A 164 -----MMVLQLPERCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRR-IESPLKHQHRCVAIFKDKQN--KPTGFAL 233 (368)
T ss_dssp -----SEEEECSSCEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEE-CCCSCSSCEEEEEEEECTTS--CEEEEEE
T ss_pred -----EEEEecCCCceEEEecCC--eeEEEeCCCcEEEEEeccccchhhh-ccccccCCCceEEEcccCCC--CCCeEEE
Confidence 222334556777777754 7899999999999999887655322 22234455666666653111 1334999
Q ss_pred EECCCcEEEEECCCC---ceEEeeeccC
Q 003360 415 ATKDSSVLVLDSDNG---NMLSTNLIHP 439 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg---~~i~~~~~~~ 439 (826)
++.|+.|++|+..++ ..+..+..|.
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred ecCCCcEEEEecCCCCccccceeeeeee
Confidence 999999999999977 3444544443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-19 Score=194.97 Aligned_cols=228 Identities=11% Similarity=0.121 Sum_probs=168.1
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF 228 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~ 228 (826)
...+|.|.+||...- .....+..+. .|++++|+|+++.++.++ ++.|.+|+.........
T Consensus 50 ~~~d~~i~v~d~~~~-----------------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 50 NAHSNDVSIIDTATN-----------------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EGGGTEEEEEETTTT-----------------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCeEEEEECCCC-----------------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 335677888886541 1122233343 899999999999886644 78999998765444333
Q ss_pred ccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EEEeCC
Q 003360 229 ETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VSGDQS 304 (826)
Q Consensus 229 ~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-asgs~d 304 (826)
..+...+.+ |+|+++.| ++++.|+.|++||+..... +..+. ....+.+++|+|+++.| ++++.+
T Consensus 112 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 112 -VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVS---------VGRSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp -EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---------CCSSEEEEEECTTSSEEEEEETTT
T ss_pred -EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEe---------cCCCcceEEECCCCCEEEEEeCCC
Confidence 233445656 99999966 7888899999999955442 12222 22467999999999877 677889
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cCCeEEEEecCCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQGYVYLLDTEGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~dG~V~vwD~~~~~~l 381 (826)
+.|++||++++.. .....+...+.+++|+|++.+|++++ .++.|++||+.+++++
T Consensus 180 ~~v~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 180 MSISVIDTVTNSV----------------------IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp TEEEEEETTTTEE----------------------EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCeE----------------------EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 9999999984322 33334566789999999999999988 6899999999999887
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEE-EEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFL-VIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l-~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
..... ...+.++.|++ ++.+| ++++.|+.|++||..+++.+..+..+..
T Consensus 238 ~~~~~----~~~~~~~~~s~------dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 238 ARIPV----GPDPAGIAVTP------DGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEC----CSSEEEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEec----CCCccEEEEcc------CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 55442 23578899998 57777 5667899999999999999988766544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=209.99 Aligned_cols=251 Identities=14% Similarity=0.051 Sum_probs=162.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--------CCCeEEEec-CCcEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--------GNSFILSSA-DEDYS 216 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--------~~~~l~~~~-d~~i~ 216 (826)
..+..++.++.+.+||...-. .. .......+.+|...|++++|+| +++.|++++ |++|+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~-----~~-------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNET-----II-------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTE-----EE-------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CEEEEEeCCCcEEEEECCCCc-----cc-------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 345566778999999976510 00 0111224678999999999998 889999998 99999
Q ss_pred EeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceee-eee-----------ccc---ccccc
Q 003360 217 LLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLL-ILS-----------LKQ---QSEKD 278 (826)
Q Consensus 217 ~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~-i~~-----------l~~---~~~~~ 278 (826)
+|+...........+|.+.|.+ |+|++ ++|++|+.||+|++||+....... ... ... .....
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 9986443322223678888888 99987 489999999999999994332110 000 000 00011
Q ss_pred cccCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccc-----cceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 279 FSLSGIPLTALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIE-----NSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 279 ~~~h~~~V~~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~-----~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
...|...|.++.|+ |++..|++++.|+++++||+..+..... ..+..+.+.++ .+.......+...
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN--------VQGISLFPSLLGA 321 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS--------EEEECSSCCSSCC
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc--------cccccccCcceeE
Confidence 23566889999997 7999999999999999999986543211 11111111111 1112222223333
Q ss_pred EEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 353 NMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 353 ~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.|++ ++.++++|+.||+|++||+.++.++... ..|..+|.+++|+| |+++|++++.+| +.+|.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafsp------dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQ------DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECT------TSSEEEEEESSE-EEEEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcC------CCCEEEEEeCCC-eEEEEE
Confidence 4443 4456778899999999999988876433 36778999999999 799999998776 555554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-20 Score=204.71 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=197.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
...+.+++|. |++.+++++..||.|++||+.++...+.. +.. ....+..+|..+.|.. ++.+++
T Consensus 122 ~~~~~~~~~s-~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~----~~~~~~~~v~~~~~~~----~~~~~~ 185 (433)
T 3bws_A 122 GFQPKSVRFI-DNTRLAIPLLEDEGMDVLDINSGQTVRLS-------PPE----KYKKKLGFVETISIPE----HNELWV 185 (433)
T ss_dssp SSCBCCCEES-SSSEEEEEBTTSSSEEEEETTTCCEEEEC-------CCH----HHHTTCCEEEEEEEGG----GTEEEE
T ss_pred CCCceEEEEe-CCCeEEEEeCCCCeEEEEECCCCeEeeec-------Ccc----cccccCCceeEEEEcC----CCEEEE
Confidence 4567899995 58889999999999999999886221110 000 0012233455555522 233333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
....+|.+.+||....
T Consensus 186 ---------------------------------------------------------s~~~d~~v~~~d~~~~------- 201 (433)
T 3bws_A 186 ---------------------------------------------------------SQMQANAVHVFDLKTL------- 201 (433)
T ss_dssp ---------------------------------------------------------EEGGGTEEEEEETTTC-------
T ss_pred ---------------------------------------------------------EECCCCEEEEEECCCc-------
Confidence 3334466777776441
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
.....+..|...+++++|+|+++.+++ +. ++.|.+|+......... ..+.+.+.+ ++|++++|++
T Consensus 202 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 202 ----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp ----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCSEEEEEEECTTSSEEEE
T ss_pred ----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCCCceEEEEcCCCCEEEE
Confidence 122335578889999999999998855 54 89999998654433322 233445655 9999999998
Q ss_pred EE--------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCcc
Q 003360 249 GH--------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 249 gs--------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
++ .||.|++||+..... +..+ .|...+.+++|+|+++. +++++.|+.|++||+.++..
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-- 337 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKL--IDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-- 337 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEE--EEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--
T ss_pred EECCCCccccCCCeEEEEECCCCcE--Eeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--
Confidence 88 589999999955442 1111 23357889999999975 56678999999999984322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---------------CCeEEEEecCCCeeEEee
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---------------QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---------------dG~V~vwD~~~~~~l~~~ 384 (826)
.....+...+.+++|+|+|.++++++. ||.|++||+.+++++...
T Consensus 338 --------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 338 --------------------QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp --------------------EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred --------------------EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 333345677999999999999988887 579999999999888554
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-CCcEEEEECC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATK-DSSVLVLDSD 427 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~ 427 (826)
. ....+.+++|+| ++.+|++++. |+.|++|++.
T Consensus 398 ~----~~~~~~~~~~s~------dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 E----AGNQPTGLDVSP------DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp E----CSSSEEEEEECT------TSCEEEEEETTTTEEEEEEET
T ss_pred c----CCCCCceEEEcC------CCCEEEEEECCCCeEEEEEec
Confidence 3 245789999998 6889988875 9999999976
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=199.86 Aligned_cols=218 Identities=14% Similarity=0.227 Sum_probs=151.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCc
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~ 264 (826)
...|...|++++|+|++..+++|++..+++|+....... . ..+.+++.. +.+.++++ ++|+.|++|+|||.....
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHI-M-SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEE-E-EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCccee-e-eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 477999999999999999999999666889976532221 1 122224444 77777766 678889999999995444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC-CCcccc----c-------eEEEe-ecCC
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE-PHAIEN----S-------FLSFT-GSKK 331 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~-~~~~~~----~-------~~~i~-~s~~ 331 (826)
. +..+. +...|.+++|+++. ++++ .|+.|++||+... .....- . ...+. .+.+
T Consensus 93 ~--~~~~~---------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 93 D--VSRIK---------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp E--EEEEE---------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred E--EEEEE---------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence 2 22222 34588899888763 3333 3677888888765 221110 0 00011 2223
Q ss_pred CCeEEEEE-----------------------EEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecc
Q 003360 332 GNSHIIHS-----------------------VKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 332 ~~~~~~~~-----------------------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~ 387 (826)
+.. .++. ..+..|.++|++++|+|+|.+||+|+.||+ |+|||+++++++..+.
T Consensus 159 g~v-~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-- 235 (355)
T 3vu4_A 159 GQI-HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-- 235 (355)
T ss_dssp TCE-EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE--
T ss_pred cEE-EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--
Confidence 321 1111 234457888999999999999999999998 9999999999885553
Q ss_pred cC-CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 388 SD-ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 388 ~~-~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.+ |..+|.+++|+| ++.+|++++.|++|++||+..+.
T Consensus 236 ~g~h~~~v~~~~~s~------~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 236 RGLDRADVVDMKWST------DGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CTTCCSCEEEEEECT------TSCEEEEEETTCEEEEEESSCCS
T ss_pred cCCCCCcEEEEEECC------CCCEEEEEECCCEEEEEEccCCC
Confidence 24 889999999999 69999999999999999998664
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=193.99 Aligned_cols=185 Identities=8% Similarity=0.057 Sum_probs=122.9
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCC---CCCEEEEEECCCcEEEEeCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSK---VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~---~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+|+..|..++|+++++.+.+ . ..|...+.. |++ ++++|++|+.|++|||||+...
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s------------------~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKEN------------------Q-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEE------------------E-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred cCCCCcEEEEEECCCCceeee------------------e-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 456666777766666665422 1 345555544 777 7799999999999999999544
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEE------------EEEeCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL------------VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L------------asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
.. +.++... ..+...|.+++|+|++.++ ++|+.|++|++||..++.... +..+.+ ++
T Consensus 214 k~--l~tL~g~-----~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~---v~~~~~-p~ 282 (356)
T 2w18_A 214 QL--LKKMHID-----DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG---VMLYCL-PP 282 (356)
T ss_dssp CE--EEEEECC-----C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE---EEEECC-CT
T ss_pred cE--EEEEcCC-----CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE---EEEeec-cC
Confidence 32 2333310 1122578899999999876 668899999999988543210 000000 11
Q ss_pred CCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee-EEEEeecccCCCCCc
Q 003360 332 GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV-SLQFETCSLQGFEKN 410 (826)
Q Consensus 332 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~-sl~f~~~~~~~~d~~ 410 (826)
.|.+.+.+..++ +.++|+|+.||+|+|||+.+++++.++. +|...+. +++|+| |+.
T Consensus 283 ------------Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSP------DG~ 339 (356)
T 2w18_A 283 ------------GQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSG------TDS 339 (356)
T ss_dssp ------------TCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECS------SSS
T ss_pred ------------CCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECC------CCC
Confidence 122234444444 7789999999999999999999996553 5665554 689999 699
Q ss_pred EEEEEECCCcEEEEEC
Q 003360 411 FLVIATKDSSVLVLDS 426 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~ 426 (826)
+|++|+.|++|+|||.
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999985
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-19 Score=187.46 Aligned_cols=287 Identities=9% Similarity=0.014 Sum_probs=175.7
Q ss_pred cCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee
Q 003360 123 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 202 (826)
Q Consensus 123 ~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~ 202 (826)
+.....+|+..+--. ..+... ..|+...+..+.+|+...- ...+...++.+|+-+|..+.+.|
T Consensus 34 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~v~lw~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~ 96 (356)
T 2w18_A 34 PSGSCSVDVSAMFWE--RAGCKE-PCIITACEDVVSLWKALDA--------------WQWEKLYTWHFAEVPVLQIVPVP 96 (356)
T ss_dssp CCSSCEEEEEEEEEC------CE-EEEEEEESSEEEEEEESSS--------------SBEEEEEEEECCSSCEEEECCCT
T ss_pred CCCCeEEEEeeeeec--cCCCCc-cEEEEeccceEEEcccCCC--------------ccceeeEEEeccCceeEEEEEcC
Confidence 445556677665311 011222 3466667788999987661 01234556778887888887877
Q ss_pred CCCeEEE-ec--CCc--EEEe--ccC---CCceeecccccCCcceeeCCCCCEEEEEE--CCCcEEEEeCCC-Cceeeee
Q 003360 203 GNSFILS-SA--DED--YSLL--AKS---VPPLLDFETKLKDGSQSHSKVKNLFITGH--SDGAINFWDVSC-PLFLLIL 269 (826)
Q Consensus 203 ~~~~l~~-~~--d~~--i~~w--~~~---~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs--~DGtVriWD~s~-~~~~~i~ 269 (826)
+-..|+. +. -+. ++.. ... ...... ..+|...|++. ++++++.++. .|+.|++|+++. ... +.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~-s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~ 172 (356)
T 2w18_A 97 DVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL-KSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGG--KE 172 (356)
T ss_dssp TCCSCEEEEECSSSEEEEEEECC------CCEEEE-EEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCE--EE
T ss_pred cccceeeeeeccccccceEEEEECCCccccccEEE-eCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCce--ee
Confidence 6544433 11 111 1111 111 011111 12233333334 4566666644 699999999932 321 11
Q ss_pred ecccccccccccCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-c
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-I 345 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~ 345 (826)
...+|...|+.++|+| ++..|++|+.|++|+|||+.+++. ++... +
T Consensus 173 --------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~----------------------l~tL~g~ 222 (356)
T 2w18_A 173 --------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL----------------------LKKMHID 222 (356)
T ss_dssp --------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE----------------------EEEEECC
T ss_pred --------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE----------------------EEEEcCC
Confidence 1236788899999999 779999999999999999996654 11111 1
Q ss_pred ---cCCeEEEEEccCCCEE------------EEEecCCeEEEEecCCCeeEEeeec--ccCCCCCeeEEEEeecccCCCC
Q 003360 346 ---NGSIISLNMNRNSQHL------------AVGSDQGYVYLLDTEGPTVLYQKHI--ASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 346 ---~~~V~~l~~s~~g~~l------------asGs~dG~V~vwD~~~~~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d 408 (826)
...|.+++|+|+|.++ ++|+.|++|++||..++.++....+ ..+|...+.+..+ +
T Consensus 223 ~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--------s 294 (356)
T 2w18_A 223 DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--------K 294 (356)
T ss_dssp C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--------E
T ss_pred CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--------C
Confidence 2358888999999876 6788999999999999988744321 2455544433332 2
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.++++|+.|++|+|||+.+|+++.++..|...... ++ .|+|++.+++.+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs--~v----------------------------afSPDG~~LaSG 344 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS--FV----------------------------KWSGTDSHLLAG 344 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC--EE----------------------------EECSSSSEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE--EE----------------------------EECCCCCEEEEE
Confidence 678999999999999999999999998655433221 11 245666777766
Q ss_pred ec-CcEEEEec
Q 003360 489 SE-KAACAYSL 498 (826)
Q Consensus 489 se-~~irv~sl 498 (826)
+. +.||||++
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 65 58999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-18 Score=190.09 Aligned_cols=267 Identities=9% Similarity=0.049 Sum_probs=191.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++....+|.|++||...-+. . .......+..|...|++++|++++..+++++ |+.+++|+.....
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~-----~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQT-----V-------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCE-----E-------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred eEEEEeCCCCeEEEEECCCCeE-----e-------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 3444555677899999765110 0 0000112457888999999999999999988 9999999865533
Q ss_pred eeecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.......|...+.+ |+|+++.+ ++++.||+|++||+..... +..+. +...+.+++|+|+++.|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE--IRKTD---------KIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEECC---------CCSEEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--EEEec---------CCCCceEEEEcCCCCEEEEE
Confidence 33322457777777 99999977 4555899999999954442 22222 22468999999999999998
Q ss_pred e--------CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE-EEEecCCeEEE
Q 003360 302 D--------QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYL 372 (826)
Q Consensus 302 s--------~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~v 372 (826)
+ .||.|++||+.++.. +....+...+.+++|+|++..+ ++++.|+.|++
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKL----------------------IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEE----------------------EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcE----------------------EeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 8 589999999984322 2333445578999999999754 66789999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC---------------CCcEEEEECCCCceEEeeec
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK---------------DSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~---------------Dg~V~iwd~~tg~~i~~~~~ 437 (826)
||+.+++++.... +...+.+++|++ ++.+|++++. ||.|++||..+++.+..+..
T Consensus 330 ~d~~~~~~~~~~~----~~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 330 YDLKEKKVQKSIP----VFDKPNTIALSP------DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EETTTTEEEEEEE----CSSSEEEEEECT------TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEEec----CCCCCCeEEEcC------CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 9999998875443 456789999998 5888888876 57999999999998877643
Q ss_pred cCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-e-cCcEEEEecc
Q 003360 438 HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-S-EKAACAYSLS 499 (826)
Q Consensus 438 ~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-s-e~~irv~sl~ 499 (826)
+ ..+..+. +++++.+++++ . ++.|++|++.
T Consensus 400 ~----~~~~~~~----------------------------~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 400 G----NQPTGLD----------------------------VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp S----SSEEEEE----------------------------ECTTSCEEEEEETTTTEEEEEEET
T ss_pred C----CCCceEE----------------------------EcCCCCEEEEEECCCCeEEEEEec
Confidence 1 1222222 33455565554 3 6799999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-18 Score=187.00 Aligned_cols=229 Identities=11% Similarity=0.155 Sum_probs=170.1
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~~~ 224 (826)
.++....+|.|.+||...- .....+..| ..+++++|+|+++.+ ++++ |+.|++|+.....
T Consensus 4 l~vs~~~d~~v~v~d~~~~-----------------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN-----------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTT-----------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCC-----------------eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 3456677899999998651 122234444 458999999999987 4565 9999999875544
Q ss_pred eeecccccCCccee--eCCCCCEEE-EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VS 300 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-as 300 (826)
.... ..+...+.+ |+|++++|+ +++.|++|++||+..... +..+. +...+.+++|+|+++.| ++
T Consensus 66 ~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~---------~~~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 66 VIAT-VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVK---------TGKSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp EEEE-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---------CSSSEEEEEECTTSSEEEEE
T ss_pred EEEE-EECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEe---------CCCCcceEEECCCCCEEEEE
Confidence 4333 233346766 999999775 555779999999965542 11122 33578999999999977 68
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCCe
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~~ 379 (826)
++.++.|++||+.++.. .........+.+++|+|+++++ ++++.+|.|++||+++++
T Consensus 134 ~~~~~~v~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAV----------------------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEE----------------------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcE----------------------EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 88899999999974322 2233335668999999999887 677889999999999998
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE---CCCcEEEEECCCCceEEeeec
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT---KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs---~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++.... +...+.+++|++ ++.+|++++ .++.|++||+.+++.+..+..
T Consensus 192 ~~~~~~----~~~~~~~~~~~~------~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 192 VIDTVK----VEAAPSGIAVNP------EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EEEEEE----CSSEEEEEEECT------TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEe----cCCCccceEECC------CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 874443 345788999998 588888888 689999999999988877644
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-15 Score=190.06 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=148.0
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccc----------ccCCccee--eC-CCCCEEEEEECCCcEEEEeC
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET----------KLKDGSQS--HS-KVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~----------~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+...+|+|+++.++.+.++.+.+|+.....+..+.. .|.+.+.+ |+ |+|+.|++++ ++.|.+|+.
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 4566799999999999889999999764333332211 13445666 99 9999999888 889999999
Q ss_pred CCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEEEEEeCCCcEE-EEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVLVSGDQSGMVR-IFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~Lasgs~dg~V~-iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
....... + ..|.. .+..++|+ +++.|++++.++.+. +|++..+..
T Consensus 325 ~~~~~~~---~--------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--------------------- 371 (1045)
T 1k32_A 325 SGTYVLK---V--------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--------------------- 371 (1045)
T ss_dssp TSSBEEE---C--------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---------------------
T ss_pred CCCceEE---c--------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---------------------
Confidence 5544211 1 23445 79999999 999999999888888 888864321
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.....+...+.+++|+|+|++||+++.++.|++||+.++++.... ..|...+.+++|+| |+.+|++++.+
T Consensus 372 -~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~---~~~~~~v~~~~~Sp------DG~~la~~~~~ 441 (1045)
T 1k32_A 372 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---RSREAMITDFTISD------NSRFIAYGFPL 441 (1045)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCCEEECT------TSCEEEEEEEE
T ss_pred -eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec---cCCCCCccceEECC------CCCeEEEEecC
Confidence 112234567999999999999999999999999999998876433 25777889999999 69989888765
Q ss_pred C----------cEEEEECCCCc
Q 003360 419 S----------SVLVLDSDNGN 430 (826)
Q Consensus 419 g----------~V~iwd~~tg~ 430 (826)
+ .|++||..+++
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccccCCCCCeEEEEECCCCc
Confidence 4 89999999877
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-17 Score=180.37 Aligned_cols=217 Identities=7% Similarity=-0.004 Sum_probs=159.7
Q ss_pred ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CC---cEEEeccCCCceeeccc
Q 003360 155 GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DE---DYSLLAKSVPPLLDFET 230 (826)
Q Consensus 155 G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~---~i~~w~~~~~~~~~~~~ 230 (826)
+.|++||... . ....+..|...|.+++|+|+++.+++++ ++ .+.+|+........+ .
T Consensus 159 ~~i~i~d~~g----------------~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~ 219 (415)
T 2hqs_A 159 YELRVSDYDG----------------Y--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-A 219 (415)
T ss_dssp EEEEEEETTS----------------C--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-E
T ss_pred ceEEEEcCCC----------------C--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-e
Confidence 6788888644 0 1234567888999999999999999987 54 899998765554444 5
Q ss_pred ccCCccee--eCCCCCEEE-EEECCCc--EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C
Q 003360 231 KLKDGSQS--HSKVKNLFI-TGHSDGA--INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~-Tgs~DGt--VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d 304 (826)
.|.+.+.+ |+|+++.|+ +++.||. |++||+..... .. +..|...+.+++|+|+++.|++++. +
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~---~~--------l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQ--------VTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EE--------CCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE---Ee--------CcCCCCcccceEECCCCCEEEEEECCC
Confidence 67777777 999999777 7777766 89999955442 11 2346678999999999999988876 5
Q ss_pred C--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCe
Q 003360 305 G--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPT 379 (826)
Q Consensus 305 g--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~ 379 (826)
| .|.+||+.++.. .....+...+.+++|+|+|++|++++.+ +.|++||+.+++
T Consensus 289 g~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 GRPQVYKVNINGGAP----------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp SSCEEEEEETTSSCC----------------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CCcEEEEEECCCCCE----------------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 6 566667664321 1222234568899999999999988864 589999999887
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceEEee
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i~~~ 435 (826)
+.. + ..+. .+.++.|+| |+.+|++++.++ .|++||+. |+....+
T Consensus 347 ~~~---l-~~~~-~~~~~~~sp------dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 347 VQV---L-SSTF-LDETPSLAP------NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp EEE---C-CCSS-SCEEEEECT------TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred EEE---e-cCCC-CcCCeEEcC------CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 642 2 1233 889999999 699999888877 79999998 5555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-15 Score=170.97 Aligned_cols=340 Identities=11% Similarity=0.088 Sum_probs=206.1
Q ss_pred CCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccc
Q 003360 23 CPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMN 102 (826)
Q Consensus 23 ~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~ 102 (826)
+|++..+++++.||+|.+||..++....+ +..+. .+..+.+. +.+..||+.+.+ .
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~------------i~~g~-----~~~~v~~s---pdg~~l~v~~~d-----~ 200 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKV------------IDTGY-----AVHISRMS---ASGRYLLVIGRD-----A 200 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEE------------EECST-----TEEEEEEC---TTSCEEEEEETT-----S
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEE------------EecCc-----ccceEEEC---CCCCEEEEECCC-----C
Confidence 67899999999999999999988622211 11111 13344343 233455555433 4
Q ss_pred eeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEec-cCccEEEecchhHHHHHhhccCCCCCCCC
Q 003360 103 LLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLG-KSGHFYAFDDCQIERYLLQYQSRSPPSAP 181 (826)
Q Consensus 103 ~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~-~~G~l~~~d~~~i~~~~~~~~~~~~~~~~ 181 (826)
.+.++.++..+... ...++.......+.+-+ +.+ .+...+++.. .++.+.+||..+.+.
T Consensus 201 ~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp---~~~-~dg~~l~v~~~~~~~v~v~D~~t~~~-------------- 260 (543)
T 1nir_A 201 RIDMIDLWAKEPTK--VAEIKIGIEARSVESSK---FKG-YEDRYTIAGAYWPPQFAIMDGETLEP-------------- 260 (543)
T ss_dssp EEEEEETTSSSCEE--EEEEECCSEEEEEEECC---STT-CTTTEEEEEEEESSEEEEEETTTCCE--------------
T ss_pred eEEEEECcCCCCcE--EEEEecCCCcceEEeCC---CcC-CCCCEEEEEEccCCeEEEEecccccc--------------
Confidence 56666663123221 12233333333333222 000 1334566655 479999999766210
Q ss_pred ccceeee--------ccc-CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--eCCCCCEEE
Q 003360 182 KEVMLKM--------PFL-DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 182 ~~~~~~l--------~~h-~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~s~~~~~l~ 247 (826)
...+.. .+| ++.+..+.++++++.++.+. ++.|.+|+........ ...++...+.. |+|++++++
T Consensus 261 -~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 261 -KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp -EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred -ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 000101 113 34799999999888776644 8889999754422211 11233334444 999999766
Q ss_pred EE-ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEe-CCCcEEEEEeCCCCCccccceE
Q 003360 248 TG-HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGD-QSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tg-s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
++ ..|++|++||+....+ +..+.. . -..|......+ ++|+ +..++++. .|++|.+||........
T Consensus 340 va~~~~~~v~v~D~~tg~l--~~~i~~---g-~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~----- 407 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRL--SALVDV---G-KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ----- 407 (543)
T ss_dssp EEEGGGTEEEEEETTTTEE--EEEEEC---S-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT-----
T ss_pred EEecCCCeEEEEECCCCeE--EEeecc---C-CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch-----
Confidence 55 5689999999955443 222221 0 12354333333 5787 66677765 58999999998521100
Q ss_pred EEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEe-------cCCeEEEEecCCCeeEEee-ec-----ccCC
Q 003360 325 SFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGS-------DQGYVYLLDTEGPTVLYQK-HI-----ASDI 390 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs-------~dG~V~vwD~~~~~~l~~~-~~-----~~~~ 390 (826)
..... ++... +.+.+..++++|+|++|++++ .+++|.|||+.++++.+.. .+ ...+
T Consensus 408 -----~~~~~-----v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 408 -----YAWKK-----VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp -----TBTSE-----EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred -----hcCeE-----EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 00112 33333 345678899999999999987 3789999999998877332 11 1244
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEE-----CCCcEEEEECCCCceEEeee
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIAT-----KDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs-----~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+..++|++ |+..++++. .|+.|.|||..|++++.++.
T Consensus 478 ~~~~~~~~~~~------~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 478 AKRVVQPEYNK------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCEEEEEEECS------SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCceEeccCCC------CCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 67899999999 688888764 37999999999999998853
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-14 Score=163.75 Aligned_cols=327 Identities=10% Similarity=0.082 Sum_probs=203.3
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc--C
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--S 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--~ 221 (826)
...++....+|.+.+||..+. .....++.+.. +..++|+|+++++++++ |+.|.+|+. .
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~-----------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSK-----------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTC-----------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred CEEEEEEcCCCeEEEEECCCc-----------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 344556667789999987651 12233443333 88999999999999988 999999987 4
Q ss_pred CCceeecccccCCccee--eCC----CCCEEEEEE-CCCcEEEEeCCCCceeeeeeccccc--ccccccCC-CCeEEEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSK----VKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQS--EKDFSLSG-IPLTALYY 291 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~----~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~--~~~~~~h~-~~V~~l~f 291 (826)
....... ..+..+... |+| +++++++++ .+++|.+||...... +..+.... ......|. ..|.++.+
T Consensus 211 t~~~~~~-i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 211 EPTKVAE-IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp SCEEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred CCcEEEE-EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEEE
Confidence 3322221 233334444 999 999988887 589999999843332 22232100 00001133 47999999
Q ss_pred eCCCCE-EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCe
Q 003360 292 DGTSRV-LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGY 369 (826)
Q Consensus 292 sp~~~~-Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~ 369 (826)
+|++.. +++...+|.|.+||+...... . +....+...+.+++|+|+|++++++ ..+++
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------------~---~~~i~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNL-----------------T---VTSIGAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSC-----------------E---EEEEECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcc-----------------e---eEEeccCcCccCceECCCCCEEEEEecCCCe
Confidence 997754 556677899999999854321 0 1222334557889999999977655 46899
Q ss_pred EEEEecCCCeeEEeeeccc-CCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCC-------CceEEeeeccCC
Q 003360 370 VYLLDTEGPTVLYQKHIAS-DISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDN-------GNMLSTNLIHPK 440 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~-~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~t-------g~~i~~~~~~~~ 440 (826)
|.+||+.+++++....... .|......+ +.|. .+..++++. .|++|.+||..+ ++++.++.++..
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~-----~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK-----YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT-----TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC-----CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 9999999999886554321 133333332 3441 255555554 589999999998 777777655432
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee--------cCcEEEEeccccccccceeeeee
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS--------EKAACAYSLSHAVQGVKKVLYKK 512 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s--------e~~irv~sl~~~~~g~~k~~~k~ 512 (826)
. .+++ .+++++.+|.+++ ++.|+||++.+. +..++.
T Consensus 422 ~---~~~v----------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----~~~~~~ 465 (543)
T 1nir_A 422 G---SLFI----------------------------KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----DAKYQV 465 (543)
T ss_dssp C---CCCE----------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----TSCCEE
T ss_pred C---ceEE----------------------------EcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----CCCeEE
Confidence 1 1111 2456667777776 679999999842 222111
Q ss_pred -ec------CC-CCceeeEeeeeCCceEE-EEEE----eeceEEEeccCCcccccc
Q 003360 513 -KF------HS-SSCCWASTFYSGSDVGL-MLLF----TSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 513 -~~------~~-~~c~~~~~~~~~~~~~l-v~~~----~~G~I~i~slP~L~~l~~ 555 (826)
.. .+ ..-.+...+. +.+.-+ +..+ .++.|.|+....++++..
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~-~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYN-KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEEC-SSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eechhhcccCCCCCceEeccCC-CCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 00 10 1111222222 333333 3344 369999999888887766
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-15 Score=178.50 Aligned_cols=234 Identities=10% Similarity=0.049 Sum_probs=153.0
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL 225 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~ 225 (826)
..+++.. .+.|++||... . ..+ ....+..|...+..++|+|||+.++.++++.|.+|+......
T Consensus 121 ~~l~~~~-~~~i~~~d~~~-------~---~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 121 QRLLFPL-GGELYLYDLKQ-------E---GKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQ 184 (741)
T ss_dssp SEEEEEE-TTEEEEEESSS-------C---STT-----SCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEe-CCcEEEEECCC-------C---Ccc-----eEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCE
Confidence 3333333 48999998765 1 000 112345677889999999999999998888999997655443
Q ss_pred eecccccCCc----------------cee--eCCCCCEEEEEECCC---------------------------------c
Q 003360 226 LDFETKLKDG----------------SQS--HSKVKNLFITGHSDG---------------------------------A 254 (826)
Q Consensus 226 ~~~~~~h~g~----------------V~~--~s~~~~~l~Tgs~DG---------------------------------t 254 (826)
......+... +.+ |+|+|++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 3332222221 233 999999999998876 7
Q ss_pred EEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCCCCCccccceEEEee
Q 003360 255 INFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 255 VriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|++||+.+ ..... +... ..|...|..++| |+++.|++++. +..|.+||+.++...
T Consensus 265 l~~~d~~~~~~~~~---~~~~-----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---------- 325 (741)
T 2ecf_A 265 LGVISPAEQAQTQW---IDLG-----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---------- 325 (741)
T ss_dssp EEEECSSTTCCCEE---ECCC-----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE----------
T ss_pred EEEEECCCCCceEE---ecCC-----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE----------
Confidence 88899854 44211 1100 135578999999 99999997754 568999998754321
Q ss_pred cCCCCeEEEEEEEEeeccC---CeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEE-EEeecc
Q 003360 329 SKKGNSHIIHSVKVMKING---SIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSL-QFETCS 403 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~---~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl-~f~~~~ 403 (826)
. +....... .+.+++|+|+|+++++++.||.++||.+. .+. .. .+ ..+...|.++ .|++
T Consensus 326 -------~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~--~l-~~~~~~v~~~~~~s~-- 389 (741)
T 2ecf_A 326 -------V---LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA--AL-THGNWSVDELLAVDE-- 389 (741)
T ss_dssp -------E---EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE--ES-CCSSSCEEEEEEEET--
T ss_pred -------E---EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee--ee-eecceEEEeEeEEeC--
Confidence 0 11111112 35688999999999999999988888765 333 32 22 3456678777 5998
Q ss_pred cCCCCCcEEEE-EECCC--cEEEEECCC-CceEEe
Q 003360 404 LQGFEKNFLVI-ATKDS--SVLVLDSDN-GNMLST 434 (826)
Q Consensus 404 ~~~~d~~~l~s-gs~Dg--~V~iwd~~t-g~~i~~ 434 (826)
|+..|+. ++.++ .+++|+... |.....
T Consensus 390 ----dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 390 ----KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp ----TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred ----CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 5776654 45555 889998764 544443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=175.12 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=143.9
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------Cceeec----ccccCCccee--eCCCCCEEE----EE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------PPLLDF----ETKLKDGSQS--HSKVKNLFI----TG 249 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------~~~~~~----~~~h~g~V~~--~s~~~~~l~----Tg 249 (826)
.+.++.+++++++..+++++ ++ +++|.... ...... ..+|.+.|.+ |++++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678899999999999988 66 77763211 011111 1335667877 999999999 78
Q ss_pred ECCCcEEEEeCCCC------ceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 250 HSDGAINFWDVSCP------LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 250 s~DGtVriWD~s~~------~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
+.|++|+|||+... ...++..+ ..+..|...|++|+|+|+ +.+|++|+.||+|++||++.+..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~----- 184 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYH-----KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK----- 184 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEE-----ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----
T ss_pred CCCceEEEEEccccccCCcCCcceeeee-----eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----
Confidence 89999999998321 10011111 123457889999999998 78999999999999999984311
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----CCCCCeeEEE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----DISSGIVSLQ 398 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----~~~~~V~sl~ 398 (826)
. .....|...|++++|+|+|.+|++|+.||+|++||++ +.......... .|...|.++.
T Consensus 185 ------------~----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 185 ------------V----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp ------------E----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred ------------e----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 0 2334467789999999999999999999999999998 44443232211 2334799999
Q ss_pred EeecccCCCCCcEEEE-EECCCc------EEEEECCCC
Q 003360 399 FETCSLQGFEKNFLVI-ATKDSS------VLVLDSDNG 429 (826)
Q Consensus 399 f~~~~~~~~d~~~l~s-gs~Dg~------V~iwd~~tg 429 (826)
|.+ ++.++++ .+.||. +++|++.+.
T Consensus 248 w~~------~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 248 WIG------TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEE------TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred Eec------CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 998 3555544 445543 899998854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-15 Score=167.27 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=133.3
Q ss_pred CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC---cEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 213 EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
+.|++|+........+ .+|.+.+.+ |+|+++.|++++.|+ .|++||+....... + ..|...+.
T Consensus 159 ~~i~i~d~~g~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---l--------~~~~~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---V--------ASFPRHNG 226 (415)
T ss_dssp EEEEEEETTSCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---E--------ECCSSCEE
T ss_pred ceEEEEcCCCCCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---e--------ecCCCccc
Confidence 6899997765444544 668888888 999999999999886 99999995444211 1 23556899
Q ss_pred EEEEeCCCCEEE-EEeCCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 288 ALYYDGTSRVLV-SGDQSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 288 ~l~fsp~~~~La-sgs~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
+++|+|+++.|+ +++.+|. |.+||+.++.. .....+...+.+++|+|+|++|+++
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----------------------RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEcCCCCEEEEEEecCCCceEEEEECCCCCE----------------------EeCcCCCCcccceEECCCCCEEEEE
Confidence 999999999888 6777765 88889874322 2333456679999999999999988
Q ss_pred ec-CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCceE
Q 003360 365 SD-QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNML 432 (826)
Q Consensus 365 s~-dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~i 432 (826)
+. +| .|++||+.++.+.. . ..+...+.++.|+| |+.+|++++.+ ..|++||..+++..
T Consensus 285 s~~~g~~~i~~~d~~~~~~~~-l---~~~~~~~~~~~~sp------dG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQR-I---TWEGSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCEE-C---CCSSSEEEEEEECT------TSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCcEEEEEECCCCCEEE-E---ecCCCcccCeEECC------CCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 86 45 68888998876441 1 23456788999999 68989888764 58999999988764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=150.55 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=158.4
Q ss_pred cCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCC-Cceeecccc
Q 003360 153 KSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV-PPLLDFETK 231 (826)
Q Consensus 153 ~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-~~~~~~~~~ 231 (826)
..+.|++||...- ....+..|...|.+++|+|+++.+++++++.+.+|+... .........
T Consensus 20 ~~~~i~~~d~~~~------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTR------------------KMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp CCEEEEEEETTTT------------------EEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT
T ss_pred cceeEEEEeCCCC------------------ceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc
Confidence 4578889987651 122345678899999999999999998899999997665 444433233
Q ss_pred c-CCccee--eCCCCCEEEEEE--CCCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeC
Q 003360 232 L-KDGSQS--HSKVKNLFITGH--SDGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQ 303 (826)
Q Consensus 232 h-~g~V~~--~s~~~~~l~Tgs--~DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~ 303 (826)
+ ...+.+ |+|++++|++++ .++.++||.+ .+... ..+. +...+..++|+|+++.|+ +++.
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~---------~~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP---RLMT---------KNLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC---EECC---------SSSSEEEEEECTTSSEEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce---EEee---------cCCCccceEECCCCCEEEEEECC
Confidence 4 355655 999999999999 4466777766 33331 1111 223588999999999887 7888
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC-CCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE-GPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~-~~~~l 381 (826)
++.++||++..... .. .....+...+.+++|+|+|.+|++++ .++.++||++. .+..+
T Consensus 150 ~~~~~l~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 150 DQVFDIYSMDIDSG---------------VE-----TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp TTEEEEEEEETTTC---------------CE-----EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred CCceEEEEEECCCC---------------cc-----eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 99999999863211 11 23334566799999999999888766 58999999986 34333
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-----------CcEEEEECCCCceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-----------SSVLVLDSDNGNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-----------g~V~iwd~~tg~~i 432 (826)
... ..+...+.++.|+| ++.+|++++.+ +.|++||+.+++..
T Consensus 210 ~~~---~~~~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 210 ERI---TDSAYGDWFPHPSP------SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEC---CCCSEEEEEEEECT------TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEE---ecCCcccCCeEECC------CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 222 34556788899998 68888888876 56999999987653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-13 Score=144.17 Aligned_cols=241 Identities=11% Similarity=0.126 Sum_probs=150.7
Q ss_pred ceEEEeccC-ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccC-
Q 003360 146 DSFLLLGKS-GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKS- 221 (826)
Q Consensus 146 ~~liv~~~~-G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~- 221 (826)
..++++... +.+.+|+...- . + .......++.+. .+..++|+|+++.+++++ ++.+.+|+..
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~-------~-~-----~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 115 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPD-------D-G-----ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLED 115 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTT-------T-C-----CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CEEEEeecCCCeEEEEEecCC-------C-C-----ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence 455666555 89999987520 0 0 001112233333 778999999999887755 7889999762
Q ss_pred --CCceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEEeCCC-Cceeeee--ecccccccccccCCCCeEEEEEeC
Q 003360 222 --VPPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVSC-PLFLLIL--SLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 222 --~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s~-~~~~~i~--~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
....... ......+.+ |+|+++++++++ .|+.|++||+.. .....+. .+. ...+..+..++|+|
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 116 GLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-------TVEGAGPRHMVFHP 187 (343)
T ss_dssp TEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-------CSTTCCEEEEEECT
T ss_pred Ccccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-------cCCCCCcceEEECC
Confidence 1111111 222233554 999999888777 899999999954 4422211 111 11235788999999
Q ss_pred CCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee----ccCCeEEEEEccCCCEEEEE-ecC
Q 003360 294 TSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK----INGSIISLNMNRNSQHLAVG-SDQ 367 (826)
Q Consensus 294 ~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~----~~~~V~~l~~s~~g~~lasG-s~d 367 (826)
++++|++++ .++.|.+|++...... +. ......... ....+.+++|+|+|++|+++ ..+
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~----~~-----------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGN----IE-----------CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSC----CE-----------EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCc----EE-----------EEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 999776554 7899999999632110 00 000011011 02357789999999887754 479
Q ss_pred CeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEE--ECCCCce
Q 003360 368 GYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVL--DSDNGNM 431 (826)
Q Consensus 368 G~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iw--d~~tg~~ 431 (826)
+.|++||+. +++........ .+ ..+..++|++ ++.+|++++ .++.|.+| |..+|+.
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~-~~-~~~~~~~~s~------dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQP-TE-TQPRGFNVDH------SGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEE-CS-SSCCCEEECT------TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEEEcCCCCceEEeeeec-CC-CccceEEECC------CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 999999998 33322112221 22 2378899998 688888887 68999999 6557754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=169.33 Aligned_cols=211 Identities=7% Similarity=0.020 Sum_probs=146.9
Q ss_pred CCCEEEEEEeeCCCeEEEec--CC-----cEEEeccCCCceeecccccC------------------------Cccee--
Q 003360 192 DSSITAMKLITGNSFILSSA--DE-----DYSLLAKSVPPLLDFETKLK------------------------DGSQS-- 238 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~-----~i~~w~~~~~~~~~~~~~h~------------------------g~V~~-- 238 (826)
...|+.++|+|||+.+++++ |+ .|.+|+............+. .++.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 45689999999999999876 66 79999765544333312222 22555
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCC---ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCP---LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~---~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+|+|++|++++. +.|++||+.+. .. ..+..|...+.+++|+||++.|+.++. +.|.+||+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-----------~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV-----------RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC-----------CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE-----------EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC
Confidence 9999999999987 99999999554 31 112345678999999999999999874 58999999754
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-------eccCCeEEEEEccCCCEEEEEecCC--------------------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-------KINGSIISLNMNRNSQHLAVGSDQG-------------------- 368 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-------~~~~~V~~l~~s~~g~~lasGs~dG-------------------- 368 (826)
.. ..+.. .+... +..+ .....+.+++|||||++|++++.|+
T Consensus 183 ~~------~~~~~--~~~~~----~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 183 RQ------MQLTA--DGSTT----IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp EE------EECCC--CCCSS----EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CE------EEecc--CCccc----eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 21 00000 00000 0000 0011257899999999999998776
Q ss_pred -------------eEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-----CCcEEEEECCCC
Q 003360 369 -------------YVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-----DSSVLVLDSDNG 429 (826)
Q Consensus 369 -------------~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-----Dg~V~iwd~~tg 429 (826)
.|++||+.+ +++.... ....+...+.++.| | |+.+|++++. +..|++||..+|
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-p------Dg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWID-LGKEQDIYLARVNW-R------DPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEEC-CCSCSSEEEEEEEE-E------ETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEec-CCCCcceEEEEEEe-C------CCCEEEEEEecccCCeEEEEEEECCCC
Confidence 889999988 7755222 11246678999999 9 6888887664 568999999998
Q ss_pred ceEEee
Q 003360 430 NMLSTN 435 (826)
Q Consensus 430 ~~i~~~ 435 (826)
++...+
T Consensus 323 ~~~~~~ 328 (741)
T 2ecf_A 323 QQRVLA 328 (741)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 876554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-14 Score=175.06 Aligned_cols=196 Identities=16% Similarity=0.060 Sum_probs=153.1
Q ss_pred cCCCEEEEEEe-eCCCeEEEecCCcEEEeccCCCceeecccccCC-ccee--eCCCCCEEEEEECCCcEE-EEeCCCCce
Q 003360 191 LDSSITAMKLI-TGNSFILSSADEDYSLLAKSVPPLLDFETKLKD-GSQS--HSKVKNLFITGHSDGAIN-FWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs-~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g-~V~~--~s~~~~~l~Tgs~DGtVr-iWD~s~~~~ 265 (826)
|...|..++|+ |+++.++.+.++.+.+|+........+ ..|.+ .+.+ |+ +++.|++++.++.+. +||+.+...
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 55678999999 999999998888899997655444444 45565 6666 89 999999999988888 889855442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. + ..|...+..++|+|+++.|++++.++.|++||+.++.. . .....+
T Consensus 372 ~~---l--------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-----------------~----~~~~~~ 419 (1045)
T 1k32_A 372 EK---F--------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-----------------T----VIERSR 419 (1045)
T ss_dssp EE---C--------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------E----EEEECS
T ss_pred eE---e--------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-----------------E----EeccCC
Confidence 11 1 24557899999999999999999999999999984432 1 112246
Q ss_pred cCCeEEEEEccCCCEEEEEecCC----------eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQG----------YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG----------~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.+.|.+++|||+|++|++++.++ .|++||+.+++.. . ...+...+.++.|++ |+.+|+++
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-~---l~~~~~~~~~~~~sp------dG~~l~~~ 489 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-A---ATTENSHDYAPAFDA------DSKNLYYL 489 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-E---CSCSSSBEEEEEECT------TSCEEEEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-E---eeCCCcccCCceEcC------CCCEEEEE
Confidence 67789999999999999887754 8999999988733 2 235667788899999 69999999
Q ss_pred ECCCcEEEEECCCCc
Q 003360 416 TKDSSVLVLDSDNGN 430 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~ 430 (826)
+.++...+|+.....
T Consensus 490 s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLN 504 (1045)
T ss_dssp ESCCCCCEECSSSSC
T ss_pred ecccCCcCcchhccc
Confidence 999999999876443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=148.31 Aligned_cols=210 Identities=10% Similarity=0.123 Sum_probs=135.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCC----cEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCc-EEEEe
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADE----DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGA-INFWD 259 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~----~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGt-VriWD 259 (826)
+..+..+..+++|+|+++.++++.+. .+.+|+......... ..+.....+ |+|+++ +++++..++. |++|+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE-EECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 34444555558999999999965533 899997655443332 222233344 999998 5566677788 99999
Q ss_pred CCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.. ..+.. ... ........+..++|+|+++++++ +..++.|.+||+.++... . .
T Consensus 158 ~~~~g~~~~---~~~----~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---------------~-~- 213 (331)
T 3u4y_A 158 IDADGVLFD---TGQ----EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---------------T-L- 213 (331)
T ss_dssp ECTTCCEEE---EEE----EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------------E-E-
T ss_pred ECCCCcEee---cCC----ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------------c-e-
Confidence 943 22111 110 01123456899999999996655 456899999999854320 0 0
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccC------CCCCeeEEEEeecccCCCCCc
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASD------ISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~------~~~~V~sl~f~~~~~~~~d~~ 410 (826)
+........+.+++|+|+|+++++++ .++.|.+||+.++++......... .......++|+| |+.
T Consensus 214 --~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~ 285 (331)
T 3u4y_A 214 --LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK------TET 285 (331)
T ss_dssp --EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT------TSS
T ss_pred --eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC------CCC
Confidence 22223346678999999999776665 578899999999887322211111 111234588988 688
Q ss_pred EEEEEEC-CCcEEEEECCCCc
Q 003360 411 FLVIATK-DSSVLVLDSDNGN 430 (826)
Q Consensus 411 ~l~sgs~-Dg~V~iwd~~tg~ 430 (826)
+|++++. ++.|.+||+.+..
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 8876665 5699999998543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-14 Score=170.45 Aligned_cols=224 Identities=10% Similarity=0.078 Sum_probs=151.2
Q ss_pred cCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCC-----Cceee
Q 003360 153 KSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV-----PPLLD 227 (826)
Q Consensus 153 ~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-----~~~~~ 227 (826)
.++.+++||..+- ....+..+...+..++|+|+|+.++.+.++.|.+|+... .....
T Consensus 99 ~~~~i~~~d~~~~------------------~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 99 TQGGLVGFDMLAR------------------KVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp ETTEEEEEETTTT------------------EEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred ECCEEEEEECCCC------------------ceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 4478888887541 112234455667888999999999997799999997654 33333
Q ss_pred cccccCCc--------------cee--eCCCCCEEEEEE---------------------------------CCCcEEEE
Q 003360 228 FETKLKDG--------------SQS--HSKVKNLFITGH---------------------------------SDGAINFW 258 (826)
Q Consensus 228 ~~~~h~g~--------------V~~--~s~~~~~l~Tgs---------------------------------~DGtVriW 258 (826)
....+... +.+ |+|+|++|++++ .++.|++|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 31222222 244 999999999998 45789999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
|+.+..... +. ....|...|.+++|+|+++.|++++.++ .|.+||+.++..
T Consensus 241 d~~~~~~~~---~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~---------------- 296 (706)
T 2z3z_A 241 HLATGKTVY---LQ-----TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF---------------- 296 (706)
T ss_dssp ETTTTEEEE---CC-----CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----------------
T ss_pred ECCCCceEe---ec-----cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----------------
Confidence 996555312 11 0013556799999999999999988775 899999875421
Q ss_pred eEEEEEEEEeecc---CCeEEEEEcc--CCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeE-EEEeecccCC
Q 003360 334 SHIIHSVKVMKIN---GSIISLNMNR--NSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVS-LQFETCSLQG 406 (826)
Q Consensus 334 ~~~~~~~~~~~~~---~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~s-l~f~~~~~~~ 406 (826)
... +...... ..+.+++|+| +|+++++++.||.++||++. .+..+... ..+...+.+ +.|++
T Consensus 297 ~~~---~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l---~~~~~~v~~~~~~sp----- 365 (706)
T 2z3z_A 297 VRT---LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV---TKGEWEVTNFAGFDP----- 365 (706)
T ss_dssp EEE---EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC---CCSSSCEEEEEEECT-----
T ss_pred eeE---EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec---CCCCeEEEeeeEEcC-----
Confidence 000 1111111 1246789999 99999999999999999886 45544222 345566776 78998
Q ss_pred CCCcEEEEEEC-CC----cEEEEECCCCc
Q 003360 407 FEKNFLVIATK-DS----SVLVLDSDNGN 430 (826)
Q Consensus 407 ~d~~~l~sgs~-Dg----~V~iwd~~tg~ 430 (826)
|+..|++++. ++ .|..||..+++
T Consensus 366 -dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 366 -KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 5777766554 44 68888888766
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-13 Score=143.96 Aligned_cols=234 Identities=8% Similarity=0.024 Sum_probs=149.2
Q ss_pred EEEe-ccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-CcEEEeccC--C
Q 003360 148 FLLL-GKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-EDYSLLAKS--V 222 (826)
Q Consensus 148 liv~-~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-~~i~~w~~~--~ 222 (826)
+++. ..+|.+.+||...- ..........|...+.+++|+|+++.+++++ + +.+.+|+.. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHE---------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTT---------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCC---------------CcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 4444 66899999987420 0011122234667788999999999888877 4 899999654 2
Q ss_pred Cceeec-ccccCCccee--eCCCCCEEEEEE-CCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 223 PPLLDF-ETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 223 ~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
...... .....+.+.. |+|++++|++++ .++.|++||+. +.....+..+. ....+.+++|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 72 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---------GLDGCHSANISPDNRT 142 (343)
T ss_dssp CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---------CCTTBCCCEECTTSSE
T ss_pred CceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---------CCCCceEEEECCCCCE
Confidence 222211 1122234444 999999776665 48999999993 22221222221 2246889999999998
Q ss_pred EEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 003360 298 LVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGS-DQGYVYLLD 374 (826)
Q Consensus 298 Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD 374 (826)
|++++ .++.|.+||+..... ...+...... .....+.+++|+|+|+++++++ .++.|.+||
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGH----------------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----------------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCCEEEEEEecCCCc----------------eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 88887 899999999974111 1000000111 1234688999999999776554 889999999
Q ss_pred cCC--CeeE--Eeee-cccC--CCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 375 TEG--PTVL--YQKH-IASD--ISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 375 ~~~--~~~l--~~~~-~~~~--~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
+.. +... .... ...+ ....+..++|++ ++.+|+++. .++.|.+|+..
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~------dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITP------DGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT------TSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECC------CCCEEEEEecCCCEEEEEEEc
Confidence 953 4332 1111 1111 133566899998 587777554 78999999998
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-13 Score=143.33 Aligned_cols=230 Identities=9% Similarity=0.067 Sum_probs=156.5
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~ 223 (826)
..++.....+.|.+||..+- .....+..+...+ .++|+|+++.++++. ++.+.+|+....
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTL-----------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred EEEEEecCCCeEEEEeCccc-----------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence 44556667889999997651 1122234455566 999999999777655 778999976554
Q ss_pred ce-eecccccCCcce-e-eCCCCCEEEEEECCC---cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 PL-LDFETKLKDGSQ-S-HSKVKNLFITGHSDG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ~~-~~~~~~h~g~V~-~-~s~~~~~l~Tgs~DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
.. ......+.+... . ++|++++++++..++ .|++||+..... +..+. ....+.+++|+|++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~---------~~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIP---------IPYDAVGIAISPNGNG 141 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEE---------CCTTEEEEEECTTSSC
T ss_pred ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEE---------CCCCccceEECCCCCE
Confidence 43 322234555555 3 999999988666653 899999955442 11222 2345689999999985
Q ss_pred EE-EEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEe
Q 003360 298 LV-SGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLD 374 (826)
Q Consensus 298 La-sgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD 374 (826)
|+ ++..++. |.+|++..... ..... .........+.+++|+|+|++++++ ..++.|++||
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~----------------~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGV----------------LFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCC----------------EEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCc----------------EeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 55 4556688 99999973211 11100 1112234458999999999966554 5689999999
Q ss_pred cCCCee---EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCce
Q 003360 375 TEGPTV---LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNM 431 (826)
Q Consensus 375 ~~~~~~---l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~ 431 (826)
+.+++. +.... ....+..++|+| |+.+|++++ .++.|.+||..+++.
T Consensus 205 ~~~~~~~~~~~~~~----~~~~~~~~~~sp------dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 205 TQNPENITLLNAVG----TNNLPGTIVVSR------DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp CSSTTSCEEEEEEE----CSSCCCCEEECT------TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCCcccceeeecc----CCCCCceEEECC------CCCEEEEEEcCCCEEEEEECCCCce
Confidence 998887 53333 235677899998 688777665 477899999998876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-13 Score=143.74 Aligned_cols=241 Identities=10% Similarity=0.121 Sum_probs=153.3
Q ss_pred EEEecc---CccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCC
Q 003360 148 FLLLGK---SGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSV 222 (826)
Q Consensus 148 liv~~~---~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~ 222 (826)
+++... .+.|++||...- .......+..+...+..++|+|+++.+++++ ++.+.+|+...
T Consensus 53 l~~~~~~~~~~~v~~~~~~~g---------------~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 53 LYSVDKEDDEGGIAAWQIDGQ---------------TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETT---------------EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred EEEEEecCCCceEEEEEecCC---------------cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 555554 589999987430 0011122345667788999999999888876 78899996531
Q ss_pred -Cceeec-ccccC----------Cccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeE
Q 003360 223 -PPLLDF-ETKLK----------DGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 223 -~~~~~~-~~~h~----------g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
...... ...+. ..+.+ |+|++++++++..++.|++||+. ...+..+..+. ...+..+.
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~~~g~~p~ 190 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-------MEAGFGPR 190 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-------CCTTCCEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-------cCCCCCCc
Confidence 111111 11111 12444 99999988888889999999995 44432222111 11224678
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec----cCCeEEEEEccCCCEE-
Q 003360 288 ALYYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI----NGSIISLNMNRNSQHL- 361 (826)
Q Consensus 288 ~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~----~~~V~~l~~s~~g~~l- 361 (826)
.++|+|++++|++ +..++.|.+|++..... .+. .+..+..... ...+..++|+|+|++|
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~-----------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTG----AFT-----------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTT----EEE-----------EEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCC----ceE-----------EeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 8999999996665 56788999999974211 000 0000111010 1348899999999977
Q ss_pred EEEecCCeEEEEecCC-C--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEEE--ECCCCceEEe
Q 003360 362 AVGSDQGYVYLLDTEG-P--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVL--DSDNGNMLST 434 (826)
Q Consensus 362 asGs~dG~V~vwD~~~-~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~iw--d~~tg~~i~~ 434 (826)
+++..++.|.+||+.. + +.+... ..+...+..++|+| |+.+|++++.+ +.|.+| |..+|+....
T Consensus 256 v~~~~~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~sp------dg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHLTLIQQI---STEGDFPRDFDLDP------TEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEEETTTEEEEEEECGGGCEEEEEEE---ECSSSCCCEEEECT------TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEeCCCCEEEEEEECCCCcEEEeEEE---ecCCCCcCeEEECC------CCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 4556689999999963 2 233222 23445678999999 68888888765 899999 6677876643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=162.68 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=125.0
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCcee------eeeecccccccccccCCCCeEEEEEeCCCCEEE----EEeCCCcEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFL------LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV----SGDQSGMVR 308 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~------~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La----sgs~dg~V~ 308 (826)
+++++.++++|+.|| |++|+....... ............ ..+...|++++|+|++++|+ +|+.|+.|+
T Consensus 44 vs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~ 121 (434)
T 2oit_A 44 VSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIA 121 (434)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEE
T ss_pred EecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEE
Confidence 889999999999998 999886210000 000000000000 12446899999999999999 788999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
|||+......... ....... +. ...|...|++++|+|+ +.+||+|+.||+|++||++++..+...
T Consensus 122 iwd~~~~~~~~~~--------~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-- 188 (434)
T 2oit_A 122 FFDVRTFSNEAKQ--------QKRPFAY---HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-- 188 (434)
T ss_dssp EEEHHHHHCTTCS--------SCCCSEE---EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE--
T ss_pred EEEccccccCCcC--------Ccceeee---eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec--
Confidence 9998743100000 0000000 11 2236788999999998 789999999999999999998765333
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccC
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHP 439 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~ 439 (826)
.+|...|.+++|+| ++.+|++|+.||+|++||.+ ++....+..+.
T Consensus 189 -~~~~~~v~~v~wsp------dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~ 233 (434)
T 2oit_A 189 -LPSTVAVTSVCWSP------KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP 233 (434)
T ss_dssp -ECGGGCEEEEEECT------TSSCEEEEETTSCEEEECTT-CCEEEEECCCT
T ss_pred -cCCCCceeEEEEcC------CCCEEEEEcCCCcEEEEccC-CcccccccCCc
Confidence 25778999999999 59999999999999999998 77666654443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-12 Score=142.56 Aligned_cols=214 Identities=12% Similarity=0.127 Sum_probs=148.7
Q ss_pred CCCEEEEEEeeCCCeEEEec--------CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeC
Q 003360 192 DSSITAMKLITGNSFILSSA--------DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDV 260 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--------d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~ 260 (826)
...+..++|+++++.++++. ++.+.+|+......... ..+...+.. ++++++ +++++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-IHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-EEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-EecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35678899999999998876 45789997655443332 222233333 999998 5556666899999999
Q ss_pred CCCceeeeeeccccccccc-ccCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 SCPLFLLILSLKQQSEKDF-SLSGIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~-~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
..... +..+........ ......+.+++|+|+++.+++++ .++.|.+||..+...
T Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-------------------- 176 (353)
T 3vgz_A 119 KTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-------------------- 176 (353)
T ss_dssp TTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--------------------
T ss_pred CCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--------------------
Confidence 54442 122221000000 00012378999999999887776 478899999874322
Q ss_pred EEEEEee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-CCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 338 HSVKVMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-DISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..... +...+.+++|+|+|+++++++.++.|.+||+.+++.+....... ++...+..+.|++ ++.+++++
T Consensus 177 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~~ 248 (353)
T 3vgz_A 177 --KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT------ARQRAFIT 248 (353)
T ss_dssp --EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET------TTTEEEEE
T ss_pred --EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC------CCCEEEEE
Confidence 22222 33447889999999999999999999999999999886555422 2455678899999 58877777
Q ss_pred EC-CCcEEEEECCCCceEEeee
Q 003360 416 TK-DSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 416 s~-Dg~V~iwd~~tg~~i~~~~ 436 (826)
+. ++.|.+||..+++.+..+.
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEE
Confidence 65 4899999999999887764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-12 Score=138.62 Aligned_cols=186 Identities=12% Similarity=0.034 Sum_probs=129.9
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+..++|+|+++.++++. ++.|.+|+............+...+.+ ++|++++++++..|+.|.+||....... .
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~--~ 220 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL--S 220 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE--E
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE--E
Confidence 67899999999887754 677999976654433321113333444 9999999999999999999999555421 1
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
.+... ...+...+..++|+|+++.+++++. ++.|.+||..++.. +.......
T Consensus 221 ~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----------------------~~~~~~~~- 273 (353)
T 3vgz_A 221 RKKLL----DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI----------------------LAKVAAPE- 273 (353)
T ss_dssp EEECC----CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE----------------------EEEEECSS-
T ss_pred EEEcC----CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----------------------EEEEEcCC-
Confidence 22210 0123457889999999997777665 48999999974432 11112222
Q ss_pred eEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 349 IISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+++|+|+|+++++++ .++.|.+||+.+++++..... ...+.+++|++ |+.+|+++..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~------dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----PTHPNSLALSA------DGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----CSEEEEEEECT------TSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----CCCCCeEEEcC------CCCEEEEEEccc
Confidence 25689999999766655 689999999999988855432 33678899998 688888777664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-13 Score=143.19 Aligned_cols=250 Identities=8% Similarity=0.005 Sum_probs=165.5
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCC--CEEEEEEeeCCCeEEEe-c-CCcEEEeccCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDS--SITAMKLITGNSFILSS-A-DEDYSLLAKSV 222 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~ 222 (826)
.+++...++.|.+||..+.+ ....+..... .+..++|+|+++.++.+ . ++.|.+|+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMA-----------------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEETTTEEEEEETTTTE-----------------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCeEEEEECCCCc-----------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 46677788999999986510 1111222211 46788999999877654 4 77899997654
Q ss_pred Ccee-eccccc----CCccee--eCCCCCEEEEEE------------CCCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 223 PPLL-DFETKL----KDGSQS--HSKVKNLFITGH------------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 223 ~~~~-~~~~~h----~g~V~~--~s~~~~~l~Tgs------------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
.... .+..++ ...+.+ ++|++++|+++. .|+.|.+||+..... +..+. .+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~---------~~ 134 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFE---------AP 134 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEE---------CC
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEe---------CC
Confidence 3333 222222 113444 999999888886 689999999955442 11122 12
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCe-------------------------
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNS------------------------- 334 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~------------------------- 334 (826)
..+.+++|+|++++|+++ ++.|.+||+.++.... ......+.+++++..
T Consensus 135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 457789999999988888 6889999998652210 000000011222110
Q ss_pred --------EEEEE--------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 335 --------HIIHS--------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 335 --------~~~~~--------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
..+.. +....+...+.+++|+|+|++++++ ++.|++||+.+++.+..... ...+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC----CCceeeEE
Confidence 00000 1222334567889999999999888 78999999999988754432 24578899
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
|++ |+.+|++++.++.|++||..+++.+..+...
T Consensus 287 ~s~------dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 287 VST------DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ECT------TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ECC------CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 998 6889999999999999999999988887544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=169.87 Aligned_cols=206 Identities=7% Similarity=0.070 Sum_probs=130.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcc------------------ee--eCCCCCEEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGS------------------QS--HSKVKNLFITG 249 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V------------------~~--~s~~~~~l~Tg 249 (826)
.|...+..++|+|||+.++.++++.|.+|+............+..++ .+ |+|+|+.|+++
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 45556888999999999999988889999765444333322223322 44 99999999998
Q ss_pred ECCC----------------------------------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 250 HSDG----------------------------------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 250 s~DG----------------------------------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
+.|+ +|++||+.+... ...+... ..+..+...|..++|+||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~--~~~~~~~~~~~~~~~SpDg 266 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPP--DDPRMREYYITMVKWATST 266 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCC--CCGGGSSEEEEEEEESSSS
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCC--ccCCCccceeEEEEEeCCC
Confidence 8654 788898844331 0112210 0112235679999999999
Q ss_pred CEEEEEeC----CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe----EEEEEccCCCEEEE--Ee
Q 003360 296 RVLVSGDQ----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI----ISLNMNRNSQHLAV--GS 365 (826)
Q Consensus 296 ~~Lasgs~----dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V----~~l~~s~~g~~las--Gs 365 (826)
++|++.+. +..|.+||+.++... . +....+.+.+ .+++|+|+|+.|++ +.
T Consensus 267 ~~l~~~~~~~~~~~~i~~~d~~~g~~~-----------------~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 267 KVAVTWLNRAQNVSILTLCDATTGVCT-----------------K---KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EEEEEEEETTSCEEEEEEEETTTCCEE-----------------E---EEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred eEEEEEEcCCCCeEEEEEEeCCCCcce-----------------E---EEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 98877653 357999998754321 0 1111222333 37899999997775 45
Q ss_pred cCC------eEEEEe-cCCCe--eEEeeecccCCCCCeeE-EEEeecccCCCCCcEEEEEECC---CcEEEEECCC
Q 003360 366 DQG------YVYLLD-TEGPT--VLYQKHIASDISSGIVS-LQFETCSLQGFEKNFLVIATKD---SSVLVLDSDN 428 (826)
Q Consensus 366 ~dG------~V~vwD-~~~~~--~l~~~~~~~~~~~~V~s-l~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~t 428 (826)
.+| .|.+|| ..++. +. ..+. .....+.. +.|+| |+..|+..+.+ +.+++|++..
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~--~~l~-~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNI--QSIT-SGDWDVTKILAYDE------KGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCC--CBSC-CSSSCEEEEEEEET------TTTEEEEEESSSCTTCCEEEEECS
T ss_pred ccCCCcceeEEEEEeccCCCCccce--eEee-cCCeEEEeeeEEcC------CCCEEEEEEcCCCCcceEEEEEeC
Confidence 677 577788 34443 02 1121 22334444 68998 68888766655 7889998764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=161.42 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=144.0
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCC---ccee--eCCCCCEEEEEECC---------CcEEEEeC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD---GSQS--HSKVKNLFITGHSD---------GAINFWDV 260 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g---~V~~--~s~~~~~l~Tgs~D---------GtVriWD~ 260 (826)
+..++|+|+|++++++.|+.+++|+............|.. .|.+ |+|+|++|++++.| +.|++||+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 4567899999987764599999997665444443244443 3666 99999999999875 77889999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHS 339 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~ 339 (826)
.+..... +.. ...|...|..++|+|+++.||.++. +.|++|++.++... .+... ..... ..+
T Consensus 99 ~~~~~~~---l~~-----~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~------~~~~~~~~~~~--~~g 161 (723)
T 1xfd_A 99 PHGDPQS---LDP-----PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI------RVVSTGKEGVI--YNG 161 (723)
T ss_dssp SSCCCEE---CCC-----TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE------EEECCCBTTTE--EEE
T ss_pred CCCceEe---ccC-----CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE------EEecCCCCCce--ECc
Confidence 5544211 221 1234456889999999999999886 78999998754321 01000 00000 000
Q ss_pred EEE----eeccCCeEEEEEccCCCEEEEEecCC----------------------------------eEEEEecCCCeeE
Q 003360 340 VKV----MKINGSIISLNMNRNSQHLAVGSDQG----------------------------------YVYLLDTEGPTVL 381 (826)
Q Consensus 340 ~~~----~~~~~~V~~l~~s~~g~~lasGs~dG----------------------------------~V~vwD~~~~~~l 381 (826)
+.. ....+.+.+++|||||++||+++.|+ .|++||+.++++.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 000 00012348899999999999987653 7999999888754
Q ss_pred Eeeecc---cCCCCCeeEEEEeecccCCCCCcEEEEEEC----CCcEEEEECCCCceEEee
Q 003360 382 YQKHIA---SDISSGIVSLQFETCSLQGFEKNFLVIATK----DSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 382 ~~~~~~---~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~----Dg~V~iwd~~tg~~i~~~ 435 (826)
...... ..+...+.++.|+| |+.+|++.+. +..|++||..+|++...+
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWAT------STKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESS------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCccCCCccceeEEEEEeC------CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 222211 11356788999999 6888877653 357999999998876553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=140.47 Aligned_cols=254 Identities=7% Similarity=-0.010 Sum_probs=161.4
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCeEEEe-c-CCcEEEecc
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSFILSS-A-DEDYSLLAK 220 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~ 220 (826)
+...+++...++.|++||..+- .....++.+. ..+..++|+|+++.++.+ . ++.|.+|+.
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASD-----------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTT-----------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCEEEEEeCCCCeEEEEECCCC-----------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 3455666778899999998651 0111223222 146788999999877654 4 788999976
Q ss_pred CCCcee-ecccccC-----Cccee--eCCCCCEEEEEECC------------CcEEEEeCCCCc-eeeeeeccccccccc
Q 003360 221 SVPPLL-DFETKLK-----DGSQS--HSKVKNLFITGHSD------------GAINFWDVSCPL-FLLILSLKQQSEKDF 279 (826)
Q Consensus 221 ~~~~~~-~~~~~h~-----g~V~~--~s~~~~~l~Tgs~D------------GtVriWD~s~~~-~~~i~~l~~~~~~~~ 279 (826)
...... .+..++. ..+.+ |+|++++|++++.+ +.|.+||+.... ...+...
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------- 144 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-------- 144 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--------
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--------
Confidence 543332 2222221 12334 99999999998876 999999994322 1111111
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc----c-------------------------ceEEEeecC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE----N-------------------------SFLSFTGSK 330 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~----~-------------------------~~~~i~~s~ 330 (826)
.+...+.+++|+|+++ +++++. .|.+||..++..... . ....+.++.
T Consensus 145 -~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (349)
T 1jmx_B 145 -PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 220 (349)
T ss_dssp -ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred -cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence 1234688999999999 666544 499999876532110 0 001111111
Q ss_pred CCCe--------E----------EEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 331 KGNS--------H----------IIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 331 ~~~~--------~----------~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
++.. . .+..+........+.+++|+| +|++++++ ++.|.+||+.+++.+..... .
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~ 294 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----D 294 (349)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----S
T ss_pred CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----C
Confidence 1100 0 000011122334678999999 99999888 88999999999988754432 2
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
..+.+++|++ |+.+|++++.++.|++||..+++.+..+...
T Consensus 295 ~~~~~~~~s~------dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 HTYYCVAFDK------KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCCCEEEECS------SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCccceEECC------CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 3467899998 5888888888999999999999988876443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-12 Score=135.97 Aligned_cols=185 Identities=11% Similarity=0.108 Sum_probs=119.2
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc-------e------eecccccCCccee--eCCCCCEEEEEE-CC
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP-------L------LDFETKLKDGSQS--HSKVKNLFITGH-SD 252 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~-------~------~~~~~~h~g~V~~--~s~~~~~l~Tgs-~D 252 (826)
+.+.+.+++|+|+++.++++. ++.+.+|+..... + ......+..+... |+|++++++++. .+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 345578899999999776654 7889999543211 1 1112233334444 999999777766 69
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+.|++||+....+..+..+.. ...+...+..++|+|++++|+++..+ +.|.+|++....
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-------------- 293 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-------------- 293 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--------------
T ss_pred CeEEEEEecCCceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--------------
Confidence 999999995444323222221 11233567899999999998777665 899999996221
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEE--ecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLL--DTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vw--D~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+.... +........+.+++|+|+|++|++++ .++.|.+| |..++++..... ..+...+.|+.|.
T Consensus 294 -g~~~~---~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~--~~~~~~p~~v~~~ 360 (361)
T 3scy_A 294 -GTLTK---VGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK--DIKVDKPVCLKFV 360 (361)
T ss_dssp -CCEEE---EEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC--CEECSSEEEEEEE
T ss_pred -CcEEE---eeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce--eeeCCCCeEEEEc
Confidence 11111 22222234688999999999888887 67899995 555676653221 1233467888775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-12 Score=152.98 Aligned_cols=216 Identities=9% Similarity=-0.033 Sum_probs=141.3
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-----Cce
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-----PLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-----~~~ 265 (826)
..|++++|+|+ ..++.+.++.+.+|+........+ ..+.+.+.+ |+|+|+.|+++ .|+.|++||+.+ ...
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 56999999999 777777789999998765544444 345556655 99999999985 789999999954 332
Q ss_pred eeeeecccccc----cccccCCCCeEEEEEeCCCCEEEEEe---------------------------------CCCcEE
Q 003360 266 LLILSLKQQSE----KDFSLSGIPLTALYYDGTSRVLVSGD---------------------------------QSGMVR 308 (826)
Q Consensus 266 ~~i~~l~~~~~----~~~~~h~~~V~~l~fsp~~~~Lasgs---------------------------------~dg~V~ 308 (826)
..+........ .....+...+.+++|+||++.|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 11110000000 00000112368999999999999987 346788
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCC-----eEEEEecCCC-eeE
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQG-----YVYLLDTEGP-TVL 381 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG-----~V~vwD~~~~-~~l 381 (826)
+||+.++... . +... .+...+.+++|+|+|++|++++.++ .|++||+.++ .+.
T Consensus 239 ~~d~~~~~~~-----------------~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 239 IYHLATGKTV-----------------Y---LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEETTTTEEE-----------------E---CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred EEECCCCceE-----------------e---eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence 8887643210 0 1111 2345589999999999999988776 8999999988 333
Q ss_pred Eeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEee
Q 003360 382 YQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLSTN 435 (826)
Q Consensus 382 ~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~~ 435 (826)
..... .......+.++.|+|. .|+.++++++.|+.+++|... +++.+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~----~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPG----SNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTT----CSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred EEEEccCCCeECccCCceeecC----CCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence 11111 0111123456788771 037889999999998888775 56666554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-11 Score=128.39 Aligned_cols=212 Identities=10% Similarity=0.095 Sum_probs=132.9
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-ceeec--cccc-----------CCccee--eCCCCCEEEE-E
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP-PLLDF--ETKL-----------KDGSQS--HSKVKNLFIT-G 249 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~-~~~~~--~~~h-----------~g~V~~--~s~~~~~l~T-g 249 (826)
+.+......+++ +++.++++. ++.+.+|+.... .+... ...+ ...+.+ |+|++++|++ +
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 334456666776 888888765 788999964321 11111 0111 112233 9999995554 4
Q ss_pred ECCCcEEEEeCCCCc-------eeee---eecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCc
Q 003360 250 HSDGAINFWDVSCPL-------FLLI---LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHA 318 (826)
Q Consensus 250 s~DGtVriWD~s~~~-------~~~i---~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~ 318 (826)
..++.|++|++.... +... .... ..+...+..++|+|+++++++++ .++.|.+|++..+..
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~- 245 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML- 245 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-
T ss_pred CCCCEEEEEEEcCCCCcccccceeeccccccee-------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-
Confidence 558999999984222 2110 0111 12345678999999999888777 689999999973321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecC--CeEEEEecC--CCeeEEeeecccCCCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTE--GPTVLYQKHIASDISSG 393 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~--~~~~l~~~~~~~~~~~~ 393 (826)
. .+..+... .+...+.+++|+|+|++|+++..+ +.|.+|++. +++........ . ...
T Consensus 246 -----~-----------~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~ 307 (361)
T 3scy_A 246 -----D-----------EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIH 307 (361)
T ss_dssp -----E-----------EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSC
T ss_pred -----E-----------EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCC
Confidence 0 00001111 112346899999999988776654 899999995 44533222221 1 456
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEE--ECCCCceEEe
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVL--DSDNGNMLST 434 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iw--d~~tg~~i~~ 434 (826)
+..++|+| |+.+|++++ .++.|.+| |..+|+....
T Consensus 308 ~~~~~~sp------dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 308 PRNFIITP------NGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CCEEEECT------TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CceEEECC------CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 78899999 689888888 56889995 6667876644
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-12 Score=132.99 Aligned_cols=180 Identities=7% Similarity=0.035 Sum_probs=128.0
Q ss_pred CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccC-CCCeE
Q 003360 212 DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLS-GIPLT 287 (826)
Q Consensus 212 d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h-~~~V~ 287 (826)
++.+.+|+........+ ..|.+.+.+ |+|++++|++++ ++.|++||+.. ..... +. ..+ ...|.
T Consensus 21 ~~~i~~~d~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~-------~~~~~~~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVV-WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VD-------TGFATICNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEE-EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CC-------CTTCCCBCS
T ss_pred ceeEEEEeCCCCceeee-ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---ec-------ccccccccc
Confidence 78899998766555544 567888888 999999999987 88999999955 44211 11 122 36788
Q ss_pred EEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE-EE
Q 003360 288 ALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA-VG 364 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la-sG 364 (826)
+++|+|+++.|++++ .++.+.||.+..... . .........+.+++|+|++++|+ ++
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~---------------~------~~~~~~~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGG---------------T------PRLMTKNLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCC---------------C------CEECCSSSSEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCC---------------c------eEEeecCCCccceEECCCCCEEEEEE
Confidence 999999999999998 446777777753211 0 11222234588999999999887 78
Q ss_pred ecCCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC-CCceEEe
Q 003360 365 SDQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 365 s~dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~-tg~~i~~ 434 (826)
+.++.++||++. ++... ....+...+.++.|+| ++.+|++++ .++.+.+|+.. .+..+..
T Consensus 148 ~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~s~------dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVET----RLTHGEGRNDGPDYSP------DGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp EETTEEEEEEEETTTCCEE----ECCCSSSCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred CCCCceEEEEEECCCCcce----EcccCCCccccceECC------CCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 889999999864 33332 1235667899999998 588777666 58999999875 3444444
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-11 Score=130.62 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=134.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEE-CCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGH-SDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD 259 (826)
..+...+..++|+|+++ +++++ ++.|.+|+......... ...+...+.. ++|++++|++++ .+++|++||
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34456677899999999 55543 46899997643332222 1224444444 899999888887 789999999
Q ss_pred C-CCCceeeeeecccccccc-cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKD-FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~-~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+ .......+..+....... ...+...+.+++|+|++++++++..++.|.+|++.... ....+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g----------------~~~~~ 178 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG----------------QLSEQ 178 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS----------------CEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC----------------cEEEe
Confidence 9 333433333222110000 00122468999999999977777778899999997211 11000
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCC--CeeEEeeecccC-----CCCCeeEEEEeecccCCCCC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEG--PTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~--~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~ 409 (826)
. .........+..++|+|+|+++++ +..++.|.+||+.. ++.......... ....+..++|+| |+
T Consensus 179 ~-~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp------dG 251 (347)
T 3hfq_A 179 S-VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH------DG 251 (347)
T ss_dssp E-EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT------TS
T ss_pred e-eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC------CC
Confidence 0 001111235788999999996665 56789999999874 543221111111 114578899999 68
Q ss_pred cEEEE-EECCCcEEEEECC
Q 003360 410 NFLVI-ATKDSSVLVLDSD 427 (826)
Q Consensus 410 ~~l~s-gs~Dg~V~iwd~~ 427 (826)
.+|++ ...++.|.+|++.
T Consensus 252 ~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CEEEEEEETTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEC
Confidence 87754 5568999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-13 Score=154.19 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=126.2
Q ss_pred EEEEEEeeCCCeEEE--ecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC----CcEEEEeCCCCcee
Q 003360 195 ITAMKLITGNSFILS--SADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD----GAINFWDVSCPLFL 266 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~--~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D----GtVriWD~s~~~~~ 266 (826)
+...+|+|+++.++. +.++.+.+|+........+ ..+.+ .+ |+|+|++|++++.| +.|++||+.+....
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l-~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL-ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE-EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe-ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 345688888875433 4455555997655444443 22223 33 99999999988887 78999998554421
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +..|...+..++|+||++.|+++..+| .|.+||+.++.. .....
T Consensus 189 ~-----------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~----------------------~~~~~ 235 (582)
T 3o4h_A 189 V-----------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV----------------------EDLEL 235 (582)
T ss_dssp E-----------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE----------------------EECCC
T ss_pred E-----------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE----------------------EEccC
Confidence 1 234557789999999999999988999 888888875432 10111
Q ss_pred ccCCeEEEE--------EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 345 INGSIISLN--------MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 345 ~~~~V~~l~--------~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+...+..++ |+|||.++++++.||++++|++ ++++. .....|.++.|+ . +.++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------~~~~~v~~~~~s-d------g~~l~~~s 300 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------APQGNHGRVVLW-R------GKLVTSHT 300 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------CCSSEEEEEEEE-T------TEEEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------cCCCceEEEEec-C------CEEEEEEc
Confidence 222344444 9999998999999999999999 66552 223567788887 3 78888888
Q ss_pred CCC---cEEEEECC
Q 003360 417 KDS---SVLVLDSD 427 (826)
Q Consensus 417 ~Dg---~V~iwd~~ 427 (826)
.+. .+++||..
T Consensus 301 ~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 301 SLSTPPRIVSLPSG 314 (582)
T ss_dssp ETTEEEEEEEETTC
T ss_pred CCCCCCeEEEEcCC
Confidence 875 47777765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-11 Score=132.46 Aligned_cols=153 Identities=11% Similarity=0.061 Sum_probs=108.6
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEE-EEEeCCCcEEEEEeCCCCCcccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVL-VSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~L-asgs~dg~V~iwd~~~~~~~~~~ 321 (826)
+++++++.|++|++||...... +..+.. .+.. .+..++|+|+++.+ +++..++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVITI-------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEEC-------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEEc-------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---
Confidence 5799999999999999954442 122220 1111 47789999999765 45566789999999754321
Q ss_pred ceEEEeecCCCCeEEEEEEEEee---ccCCeEEEEEccCCCEEEEEe------------cCCeEEEEecCCCeeEEeeec
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMK---INGSIISLNMNRNSQHLAVGS------------DQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~---~~~~V~~l~~s~~g~~lasGs------------~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.. +.... +...+.+++|+|+|++|++++ .++.|.+||+.+++.+.....
T Consensus 70 --~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 70 --GR--------------IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp --EE--------------EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred --ee--------------EEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 00 11100 112567899999999999886 579999999999887754432
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+.++.|+| |+.+|+++ ++.|++||..+++.+..+.
T Consensus 134 ----~~~~~~~~~s~------dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 134 ----PRQITMLAWAR------DGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp ----CSSCCCEEECT------TSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred ----CCCcceeEECC------CCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 34577788998 68878877 6899999999998876653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-10 Score=126.55 Aligned_cols=206 Identities=10% Similarity=0.075 Sum_probs=133.6
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccC-CCceeeccccc--CCccee--eCCCCCE--EEEEE-------------CC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKS-VPPLLDFETKL--KDGSQS--HSKVKNL--FITGH-------------SD 252 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~-~~~~~~~~~~h--~g~V~~--~s~~~~~--l~Tgs-------------~D 252 (826)
..++.++|+|+++.+++++.+.+.+|+.. ...+... ..+ .+.... ++|++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~-~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHE-ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEE-EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEe-eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988873389999753 3232222 112 133333 9999994 55553 79
Q ss_pred CcEEEEeCC-CCcee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeC-CCCCccccceEEEee
Q 003360 253 GAINFWDVS-CPLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLK-YEPHAIENSFLSFTG 328 (826)
Q Consensus 253 GtVriWD~s-~~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~-~~~~~~~~~~~~i~~ 328 (826)
|++++|++. ...+. .+..+. ..+...+.+++|+|++++|++++. ++.|.+|++. ++...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~---------- 181 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYE-------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE---------- 181 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEE-------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE----------
T ss_pred ceEEEEccCCCCcCcceEeeEE-------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE----------
Confidence 999999994 23321 111111 013467899999999998887764 6799999997 33210
Q ss_pred cCCCCeEEEEEEEEee---ccCCeEEEEEccCCCEEEEEec-CCeEEEEecC--CCeeEE---eeecc-c---CCCC---
Q 003360 329 SKKGNSHIIHSVKVMK---INGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE--GPTVLY---QKHIA-S---DISS--- 392 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~---~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~--~~~~l~---~~~~~-~---~~~~--- 392 (826)
. +.... +...+..++|+|+|+++++++. ++.|.+|++. ++++.. ..... . ++..
T Consensus 182 -------~---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 182 -------L---VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp -------E---EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred -------E---eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 0 11111 2345899999999999888775 7899999875 455432 12211 1 1122
Q ss_pred ---CeeEEE-EeecccCCCCCcEEEEEECCC------cEEEEECC-CCceE
Q 003360 393 ---GIVSLQ-FETCSLQGFEKNFLVIATKDS------SVLVLDSD-NGNML 432 (826)
Q Consensus 393 ---~V~sl~-f~~~~~~~~d~~~l~sgs~Dg------~V~iwd~~-tg~~i 432 (826)
.+..++ |+| |+++|+++..+. +|.+|++. +|+..
T Consensus 252 ~~~~~~~i~~~sp------dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 252 KGLYRADVCALTF------SGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp SBSEEEEEEEECT------TSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred cccccccEEEECC------CCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 478899 998 688888776433 89999986 56644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-11 Score=131.21 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=104.0
Q ss_pred EEEeeCCCeEEEec-CCcEEEeccCCCcee-ecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecc
Q 003360 198 MKLITGNSFILSSA-DEDYSLLAKSVPPLL-DFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
+++++++..+++++ ++.|.+|+....... .+..+....+.. ++|+++++ +++..++.|.+||+...... ..+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~--~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT--FHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE--EEEE
Confidence 45667777778777 999999986554333 222222113444 99999854 56667899999999544421 1122
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCC------------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS------------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d------------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
..... ..+...+..++|+|++++|++++.+ +.|.+||+.++.... . +
T Consensus 83 ~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------~-----~ 141 (349)
T 1jmx_B 83 LSSVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--------------P-----V 141 (349)
T ss_dssp SCCST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--------------C-----S
T ss_pred ccccc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--------------e-----e
Confidence 00000 0002347889999999999999865 899999997532210 0 2
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
....+...+.+++|+|+|+ +++++. .|.+||+.+++++...
T Consensus 142 ~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 142 RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEE
T ss_pred eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccc
Confidence 2223344688999999999 665544 4999999998877544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=143.38 Aligned_cols=191 Identities=7% Similarity=0.036 Sum_probs=135.2
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccC-Cccee--eCCCCCEEEEEEC---CCcEEEEeC---
Q 003360 192 DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLK-DGSQS--HSKVKNLFITGHS---DGAINFWDV--- 260 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~-g~V~~--~s~~~~~l~Tgs~---DGtVriWD~--- 260 (826)
..+|..++|+|||+.++.++ |+++++|.........+ ..|. ..+.+ |+|+ ++++++.. +...++|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~l-t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKL-NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEEC-CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEee-ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 34699999999999999866 89999997655444444 3344 56766 9999 88888876 556677665
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+... .+. ....+...+|+|+++ .+++++.+ .+.+||+.++..
T Consensus 99 ~~g~~~----~l~---------~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~-------------------- 144 (582)
T 3o4h_A 99 RPGEEQ----RLE---------AVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGL-------------------- 144 (582)
T ss_dssp STTCCE----ECT---------TSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEE--------------------
T ss_pred CCCccc----ccc---------CCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcE--------------------
Confidence 22221 111 112344667888774 44445444 555999974322
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecC----CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQ----GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~d----G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
.....+.. .+++|||||++||+++.+ +.|++||+.++++.. . ..+...+.+++|+| |+..|+
T Consensus 145 --~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l---~~~~~~~~~~~~Sp------DG~~l~ 210 (582)
T 3o4h_A 145 --RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F---DSGEGSFSSASISP------GMKVTA 210 (582)
T ss_dssp --EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-E---CCSSCEEEEEEECT------TSCEEE
T ss_pred --EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-e---ecCCCccccceECC------CCCEEE
Confidence 11112222 789999999999988877 789999998887651 1 35667789999999 799999
Q ss_pred EEECCC--cEEEEECCCCceE
Q 003360 414 IATKDS--SVLVLDSDNGNML 432 (826)
Q Consensus 414 sgs~Dg--~V~iwd~~tg~~i 432 (826)
++..++ .|++||..+|+..
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE
T ss_pred EccCCCeeEEEEEcCCCCcEE
Confidence 888888 8999999988876
|
| >1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-14 Score=108.27 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=53.3
Q ss_pred cchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 757 GAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
+.++.++++.+ ++.++..++++||.||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 4 ~~i~~v~~qv~----ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 4 GGIEGVKGAAS----GVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp --CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35777888766 6678999999999999999999999999999999999999999999996
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-09 Score=129.24 Aligned_cols=175 Identities=6% Similarity=-0.007 Sum_probs=105.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeec-ccccCCcc-----------------ee--eCCCCCEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDF-ETKLKDGS-----------------QS--HSKVKNLFI 247 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~-~~~h~g~V-----------------~~--~s~~~~~l~ 247 (826)
+..|...+...+|||||+.++.+.++.|.+|+........+ ..++.+.+ .+ |+|||+.|+
T Consensus 107 l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la 186 (740)
T 4a5s_A 107 EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (740)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence 45566789999999999999999899999997544333222 12222211 12 999999999
Q ss_pred EEECCCc------------------------------------EEEEeCCC---CceeeeeecccccccccccCCCCeEE
Q 003360 248 TGHSDGA------------------------------------INFWDVSC---PLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 248 Tgs~DGt------------------------------------VriWD~s~---~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.++.|.+ |++||+.+ ........+.. ...+..|...|..
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA--PASMLIGDHYLCD 264 (740)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC--CHHHHTSCEEEEE
T ss_pred EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC--CccCCCCCeEEEE
Confidence 8875543 44555533 20000001110 0001125667999
Q ss_pred EEEeCCCCEEEEEeC----CCcEEEEEeCCCC----CccccceEEEeecCCCCeEEEEEEEEeeccCCe-----EEEEEc
Q 003360 289 LYYDGTSRVLVSGDQ----SGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI-----ISLNMN 355 (826)
Q Consensus 289 l~fsp~~~~Lasgs~----dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V-----~~l~~s 355 (826)
++|+||++.++.... +..|.+||+.++. +.. +. . +....+.+.| ....|+
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---~~---------~-----l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV---AR---------Q-----HIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG---GG---------C-----EEEECSSSCSSSSSCCCCEEC
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE---EE---------E-----eeeccCCceEccCcCCCceEc
Confidence 999999997665533 3479999998665 110 00 0 1111223333 367899
Q ss_pred cCCCEEE-EEec-C--CeEEEEecCCCeeE
Q 003360 356 RNSQHLA-VGSD-Q--GYVYLLDTEGPTVL 381 (826)
Q Consensus 356 ~~g~~la-sGs~-d--G~V~vwD~~~~~~l 381 (826)
|||+.++ ..++ + ..|++||+.++.+.
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 9999887 6654 3 46888998877655
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-09 Score=117.79 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=130.8
Q ss_pred EEEEEEeeCCCe--EEEe--------------cCCcEEEeccCC-Ccee-ecc-c--ccCCccee--eCCCCCEEEEEE-
Q 003360 195 ITAMKLITGNSF--ILSS--------------ADEDYSLLAKSV-PPLL-DFE-T--KLKDGSQS--HSKVKNLFITGH- 250 (826)
Q Consensus 195 Vt~~~fs~~~~~--l~~~--------------~d~~i~~w~~~~-~~~~-~~~-~--~h~g~V~~--~s~~~~~l~Tgs- 250 (826)
+.+++|+|+++. ++++ .++.+.+|+... ..+. ... . .+...+.+ |+|+|++|+++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 445778999984 4443 467889996532 2221 111 1 23344555 999999887765
Q ss_pred CCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEee
Q 003360 251 SDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 251 ~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
.++.|++||+. ...+..+..+. +..|+..+..++|+|++++|++++. ++.|.+|++..... .+..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~--- 231 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVD------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH----MPVY--- 231 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEE------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC----CEEE---
T ss_pred CCCEEEEEEECCCCCEEEeeeEe------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC----cEEE---
Confidence 46899999995 44432222221 1123567899999999999988775 68999999863211 0000
Q ss_pred cCCCCeEEEEEEEEee-----ccC------CeEEEE-EccCCCEEEEEecCC------eEEEEecC-CCeeEEeeecccC
Q 003360 329 SKKGNSHIIHSVKVMK-----ING------SIISLN-MNRNSQHLAVGSDQG------YVYLLDTE-GPTVLYQKHIASD 389 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~-----~~~------~V~~l~-~s~~g~~lasGs~dG------~V~vwD~~-~~~~l~~~~~~~~ 389 (826)
....+.... +.. .+.+++ |+|+|++|++++.+. +|.+||+. ++++.........
T Consensus 232 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 232 -------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp -------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred -------ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 000011111 111 478999 999999888776432 89999996 5654421111112
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEEEECCCC
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVLDSDNG 429 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~iwd~~tg 429 (826)
+...+..++|+|... |+.+|++++.+ +.|.+|+....
T Consensus 305 ~~~~~~~~a~sp~~~---dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 PTSGGHSNAVSPCPW---SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTT---CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCcccceecCCCc---CCCEEEEEEcCCCeEEEEEEchh
Confidence 334456788888211 38889988865 89999998755
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-10 Score=135.41 Aligned_cols=207 Identities=7% Similarity=-0.029 Sum_probs=120.4
Q ss_pred EEEEEeeCCCeEEEec-CC----------------------------------cEEEeccCCCcee---ec-----cccc
Q 003360 196 TAMKLITGNSFILSSA-DE----------------------------------DYSLLAKSVPPLL---DF-----ETKL 232 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~----------------------------------~i~~w~~~~~~~~---~~-----~~~h 232 (826)
..++|+|||+.|+.++ |. .+.+|+....... .+ ..+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 5789999999999876 42 5667765443221 11 1246
Q ss_pred CCccee--eCCCCCEEEEEECCC----cEEEEe----CCCCceeeeeecccccccccccCCCCeE-----EEEEeCCCCE
Q 003360 233 KDGSQS--HSKVKNLFITGHSDG----AINFWD----VSCPLFLLILSLKQQSEKDFSLSGIPLT-----ALYYDGTSRV 297 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DG----tVriWD----~s~~~~~~i~~l~~~~~~~~~~h~~~V~-----~l~fsp~~~~ 297 (826)
.+.+.+ |+|+++++++....+ .|.+|| +.+..... .+. .....|...|. .+.|+|+++.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~--~~~----~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK--TQE----HIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG--GGE----EEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE--EEe----cccccCCceEccccCCccEECCCCCe
Confidence 666666 999988888755433 488899 63333111 010 00013444555 7899999985
Q ss_pred EE--EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-----CeE
Q 003360 298 LV--SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-----GYV 370 (826)
Q Consensus 298 La--sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-----G~V 370 (826)
|+ ++..+|...||-+..... .. .........|..+.++ +++.|+..+.+ +.+
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~---------------~~-----~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVE---------------NA-----IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCST---------------TC-----EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EEEEEEccCCceEEEEEECCCC---------------ce-----EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 54 456777655555442111 11 1122223457777777 77777776654 788
Q ss_pred EEEecCC--Cee-EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEE-EEECC--CcEEEEECCCCceEEee
Q 003360 371 YLLDTEG--PTV-LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLV-IATKD--SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 371 ~vwD~~~--~~~-l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~D--g~V~iwd~~tg~~i~~~ 435 (826)
++|.+.. +.. ...... ..++...+..+.|++ |+.+++ +++.+ ..+.+||..+|+++..+
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~------dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD------YAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG------GGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred EEEEEeCCCCCCCceeccCccCCCCCceEEEEECC------CCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 8888753 321 111111 112456778889998 455555 44444 46899999888866543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-09 Score=112.90 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=156.9
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeeccc-----ccCCccee--e-CCCCCEEEEEEC-CCcEEEEeC
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFET-----KLKDGSQS--H-SKVKNLFITGHS-DGAINFWDV 260 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~-----~h~g~V~~--~-s~~~~~l~Tgs~-DGtVriWD~ 260 (826)
+-..+..+++.+++..+++.. ++.|.+|+........+.. ++...+.+ + .++++++++... ++.|++||.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 335678899999998777766 8899999765433333311 12233334 5 577888887754 899999997
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.+... ..+. ..+...+..|+++|+++++++...++.|.+|+.... . +.. +
T Consensus 108 ~g~~~---~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-----~~~--------------~ 157 (286)
T 1q7f_A 108 YGQFV---RKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-----LHK--------------F 157 (286)
T ss_dssp TSCEE---EEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-----EEE--------------E
T ss_pred CCcEE---EEec-------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E-----EEE--------------e
Confidence 65542 1121 112357899999999998888888899999986421 0 000 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS- 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg- 419 (826)
........+.+|+++++|.++++.+.++.|++||.. +..+..... .++...+..+++++ ++.++++...++
T Consensus 158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~------~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS------NGEILIADNHNNF 229 (286)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT------TCCEEEEECSSSC
T ss_pred CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECC------CCCEEEEeCCCCE
Confidence 000122358999999999877777889999999985 444433321 12235688899988 577777776675
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|.+||.. |+.+..+..+... ..+..+.+ .+++.+++++.++.|++|++.
T Consensus 230 ~i~~~~~~-g~~~~~~~~~~~~-~~~~~i~~----------------------------~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 230 NLTIFTQD-GQLISALESKVKH-AQCFDVAL----------------------------MDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EEEEECTT-SCEEEEEEESSCC-SCEEEEEE----------------------------ETTTEEEEEETTTEEEEEECS
T ss_pred EEEEECCC-CCEEEEEcccCCC-CcceeEEE----------------------------CCCCcEEEECCCCeEEEEEcc
Confidence 99999964 7777776443321 11222222 223446666667789999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=146.82 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=136.2
Q ss_pred EEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCC---ccee--eCCCCCEEEEEEC---------CCcEEEEeCCC
Q 003360 197 AMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD---GSQS--HSKVKNLFITGHS---------DGAINFWDVSC 262 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g---~V~~--~s~~~~~l~Tgs~---------DGtVriWD~s~ 262 (826)
.++|+|++.+++++.|+.+.+|+........+..+|.. ++.+ |+|||++|++++. |++|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 46799999766666699999998766554444233332 3555 9999999999887 79999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... +.. ..+ ...+..++|+|||+.||.+. ++.|++|++.++... .+. .++... ..+
T Consensus 100 g~~-----~~~---~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~------~l~--~~~~~~----~v~ 155 (719)
T 1z68_A 100 GEF-----VRG---NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF------QIT--FNGREN----KIF 155 (719)
T ss_dssp TEE-----CCS---SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE------ECC--CCCBTT----TEE
T ss_pred Ccc-----ccc---eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE------EEe--cCCCcC----CeE
Confidence 552 100 001 13688899999999999886 789999999755321 000 011000 000
Q ss_pred eecc---------CCeEEEEEccCCCEEEEEecCC----------------------------------eEEEEecCCCe
Q 003360 343 MKIN---------GSIISLNMNRNSQHLAVGSDQG----------------------------------YVYLLDTEGPT 379 (826)
Q Consensus 343 ~~~~---------~~V~~l~~s~~g~~lasGs~dG----------------------------------~V~vwD~~~~~ 379 (826)
..+. +...+++|||||++||+++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 0010 2235899999999999988652 78899998876
Q ss_pred eE--Eeee---cccCCCCCeeEEEEeecccCCCCCcEEEEEECCC----cEEEEE----CCCCceE
Q 003360 380 VL--YQKH---IASDISSGIVSLQFETCSLQGFEKNFLVIATKDS----SVLVLD----SDNGNML 432 (826)
Q Consensus 380 ~l--~~~~---~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd----~~tg~~i 432 (826)
.. .... ....+...+.++.|+| |+.++++....+ .|.+|| ..+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~Sp------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVT------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESS------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeC------CCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 42 1111 1124667789999999 677666654332 488999 7777654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-09 Score=114.21 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=142.7
Q ss_pred CCCEEEEEEeeCCCeEEEec-C------------------------CcEEEeccCCCceeec-ccccCCccee--eCCCC
Q 003360 192 DSSITAMKLITGNSFILSSA-D------------------------EDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVK 243 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d------------------------~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~ 243 (826)
-..|+.++++++++.+++.. + +.|.+|+.....+... ...+...... +++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 36799999999999988876 5 2578887654333322 1122223333 88999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeeccccccc-ccccCCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK-DFSLSGIPLTALYYDG-TSRVLVSGD-QSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~-~~~~h~~~V~~l~fsp-~~~~Lasgs-~dg~V~iwd~~~~~~~~~ 320 (826)
+++++...++.|++||..+... .+..+...... .-..+-.....|+|+| ++.++++.+ .++.|++|+.. +..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~--- 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF--- 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE---
T ss_pred CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE---
Confidence 9999999999999999965521 11222110000 0012235789999999 788888776 68999999943 111
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
+..+.....+.. . ....-.....|+++|+ +.++++...++.|++||..+++.+..... ..+...+.++.|
T Consensus 178 --~~~~~~~g~~~~-----~-~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~ 248 (329)
T 3fvz_A 178 --VTQWGEESSGSS-----P-RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISY 248 (329)
T ss_dssp --EEEECEECCSSS-----C-CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEE
T ss_pred --EEEeccCCCCCC-----C-CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeee
Confidence 010000000000 0 0001123789999998 77777777899999999987887755432 245567888888
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.|......++...++...+.+|++|+..+|+.+.++
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 872111112333333344558999999999988875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-09 Score=108.16 Aligned_cols=197 Identities=7% Similarity=0.100 Sum_probs=133.6
Q ss_pred cCCCEEEEEEe-eCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 191 LDSSITAMKLI-TGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs-~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
|...+..+++. +++..+++.. ++.|.+|+........+...+...+.+ ++++++++++...++.|.+||..+...
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 154 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL 154 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE
Confidence 34567888885 6666666653 778999975543333332233334445 889999999988899999999865542
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
..+.. ..+...+..|+++|+++++++...++.|++|+.... . +.....
T Consensus 155 ---~~~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~----------------------~~~~~~ 202 (286)
T 1q7f_A 155 ---HKFGC------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y----------------------LRQIGG 202 (286)
T ss_dssp ---EEEEC------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E----------------------EEEESC
T ss_pred ---EEeCC------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-E----------------------EEEEcc
Confidence 11210 123356899999999998888888999999997521 0 111111
Q ss_pred ---cCCeEEEEEccCCCEEEEEecCC-eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 346 ---NGSIISLNMNRNSQHLAVGSDQG-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 346 ---~~~V~~l~~s~~g~~lasGs~dG-~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+..|+++++|.++++...++ .|.+||.. ++.+..... ......+.++++.+ ++.++++ +.|++|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~~i~~~~------~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMD------DGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEET------TTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc-cCCCCcceeEEECC------CCcEEEE-CCCCeE
Confidence 14578999999998888887776 99999964 555533332 12223477899988 4765555 789999
Q ss_pred EEEECCC
Q 003360 422 LVLDSDN 428 (826)
Q Consensus 422 ~iwd~~t 428 (826)
++|+...
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-09 Score=125.42 Aligned_cols=212 Identities=10% Similarity=0.009 Sum_probs=128.9
Q ss_pred cCCCEEEEEEeeCCCeEEEec-C----------CcEEEeccCC------Cceeeccc-ccCCccee--eCCCCCEEEEEE
Q 003360 191 LDSSITAMKLITGNSFILSSA-D----------EDYSLLAKSV------PPLLDFET-KLKDGSQS--HSKVKNLFITGH 250 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d----------~~i~~w~~~~------~~~~~~~~-~h~g~V~~--~s~~~~~l~Tgs 250 (826)
|...+..++|+|||+.|+.++ + ..|.+|+... .....+ . .+.+.+.. |+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVREL-SDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEES-SCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEE-EecCCCcccCceECCCCCEEEEEE
Confidence 556788999999999999877 5 4678887654 344434 3 34445544 999999999887
Q ss_pred CCC--------cEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 251 SDG--------AINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 251 ~DG--------tVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
.|+ .|++||+. .........+. ..+...+..++|+|+++++++++.+|...||.+.....
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---- 275 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---- 275 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC----
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC----
Confidence 654 79999996 34111111121 22456889999999999888898899666666542110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEE--ecCCCeeEEeeecccCCCCCeeEE-E
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL--DTEGPTVLYQKHIASDISSGIVSL-Q 398 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vw--D~~~~~~l~~~~~~~~~~~~V~sl-~ 398 (826)
....+...... .......-.+.+++|++++.++++++. |.++|| |+.++... .. ..+...+..+ .
T Consensus 276 ~~~~l~~~~~~-------~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~-~l---~~~~~~~~~~~s 343 (662)
T 3azo_A 276 AATQLCRREEE-------FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELV-DA---AGPWTEWAATLT 343 (662)
T ss_dssp CEEESSCCSSB-------SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEE-EC---CSSCCEEEEEEE
T ss_pred ceeeccccccc-------ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEE-Ee---cCCCCeEEEEEe
Confidence 01100000000 000000111567899999999999999 999999 66555532 22 2345556655 4
Q ss_pred EeecccCCCCCcEEEEE-ECCC--cEEEEECCCCceEE
Q 003360 399 FETCSLQGFEKNFLVIA-TKDS--SVLVLDSDNGNMLS 433 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sg-s~Dg--~V~iwd~~tg~~i~ 433 (826)
+.. +.+++++ +.+. .|.+||..+++...
T Consensus 344 ~~~-------~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 344 VSG-------TRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EET-------TEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred cCC-------CEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 432 3344443 4443 56777887776543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-09 Score=112.87 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=127.1
Q ss_pred EEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 198 MKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 198 ~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
.+|+||++.++.++ ++. +.+|+............+...+.. |+|+++.|+.++.++.|++||+.+.....+...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 67999999988866 554 555565554444443444444433 999999999999999999999955543232222
Q ss_pred ccccccccccCCCCeEEE--EEeCCCCEEEEE----------------------eCCCcEEEEEeCCCCCccccceEEEe
Q 003360 272 KQQSEKDFSLSGIPLTAL--YYDGTSRVLVSG----------------------DQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l--~fsp~~~~Lasg----------------------s~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+...+... .++|++..++.. ..+..|.+||+.++..
T Consensus 121 ----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~---------- 180 (388)
T 3pe7_A 121 ----------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES---------- 180 (388)
T ss_dssp ----------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE----------
T ss_pred ----------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce----------
Confidence 22233333 348999888743 2346788888874322
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecC------CeEEEEecCCCeeEEeeecccCCC-CCeeEEEE
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQ------GYVYLLDTEGPTVLYQKHIASDIS-SGIVSLQF 399 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~d------G~V~vwD~~~~~~l~~~~~~~~~~-~~V~sl~f 399 (826)
.....+...+..++|+| +|+.|+....+ ..|.++|+.++.... +..... ..+....|
T Consensus 181 ------------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 181 ------------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---VKTHAEGESCTHEFW 245 (388)
T ss_dssp ------------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE---SCCCCTTEEEEEEEE
T ss_pred ------------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE---eeeCCCCcccccceE
Confidence 22223456789999999 99999888764 378888887665431 111221 35777889
Q ss_pred eecccCCCCCcEEEEEEC-CC----cEEEEECCCCceE
Q 003360 400 ETCSLQGFEKNFLVIATK-DS----SVLVLDSDNGNML 432 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~-Dg----~V~iwd~~tg~~i 432 (826)
+| |+..|+..+. ++ .|++||+.+|+..
T Consensus 246 sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 246 VP------DGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp CT------TSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CC------CCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 98 6876655443 22 3999999988743
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=126.37 Aligned_cols=217 Identities=6% Similarity=0.000 Sum_probs=136.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEe--c-CCcEEEecc-CCCceeecccccCCcce---------e--e--CCCCCE-EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSS--A-DEDYSLLAK-SVPPLLDFETKLKDGSQ---------S--H--SKVKNL-FITG 249 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~--~-d~~i~~w~~-~~~~~~~~~~~h~g~V~---------~--~--s~~~~~-l~Tg 249 (826)
+..|...|..++++++.-.++.. . ++...+|.. .......+ ..|...+. . | +||++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 45688899999999776555555 4 677888853 22233333 33333333 2 3 499998 6655
Q ss_pred EC-CCcEEEEeCC--C-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEeCCC
Q 003360 250 HS-DGAINFWDVS--C-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----------GMVRIFKLKYE 315 (826)
Q Consensus 250 s~-DGtVriWD~s--~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----------g~V~iwd~~~~ 315 (826)
+. +..|.+|++. + ..... +... ....|...+..++|+||++.|++++.+ ..|.+||+.+.
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~---l~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRP---LTPV---SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEE---CSCC---CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred ECCCCeEEEEcCCCCCCCCCEe---ccCC---ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 43 4566666665 3 33211 2210 000145678999999999999998877 58899998751
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCC--------eEEEEecC-CCeeEEeee
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQG--------YVYLLDTE-GPTVLYQKH 385 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG--------~V~vwD~~-~~~~l~~~~ 385 (826)
.... .+.. .... .+...+..++|||||++|++++.++ .|++||+. ++.......
T Consensus 172 ~~~~-----------~~~~-----~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 172 AAAD-----------RSAV-----RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp TTTC-----------GGGS-----EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred cccc-----------CCce-----eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 1000 0101 1111 2234577889999999999888653 79999998 562111112
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCC--cEEEEECCCCceEE
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDS--SVLVLDSDNGNMLS 433 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--~V~iwd~~tg~~i~ 433 (826)
+..++...+..+.|+| |+.+++++..++ .|.+||..+|+...
T Consensus 236 l~~~~~~~~~~~~~sp------dg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAP------DGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp EEEETTBCEEEEEECT------TSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred eCCCCCceEcceEECC------CCeEEEEECCCCCeEEEEEECCCCceee
Confidence 2234567889999998 688778887888 67777877776543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=8e-10 Score=133.22 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=133.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCc-----c--eeeCCCCCEEEEEECC---------CcEEEE
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDG-----S--QSHSKVKNLFITGHSD---------GAINFW 258 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~-----V--~~~s~~~~~l~Tgs~D---------GtVriW 258 (826)
...++|+|++.+++++ |+.|.+|+........+...|... . .+|+|||++|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4568899999988887 999999976554444332444332 2 1279999999999887 556699
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|+.+..... +..|...+...+|||||+.||.+. ++.|.+|++.++.. ..++. ++...
T Consensus 98 d~~~~~~~~-----------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~------~~lt~--~g~~~--- 154 (740)
T 4a5s_A 98 DLNKRQLIT-----------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS------YRITW--TGKED--- 154 (740)
T ss_dssp ETTTTEECC-----------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC------EECCS--CCBTT---
T ss_pred ECCCCcEEE-----------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce------EEEcC--CCCcc---
Confidence 996665211 234556899999999999999884 67899999875532 11111 11000
Q ss_pred EEEEeecc---------CCeEEEEEccCCCEEEEEecCC------------------------------------eEEEE
Q 003360 339 SVKVMKIN---------GSIISLNMNRNSQHLAVGSDQG------------------------------------YVYLL 373 (826)
Q Consensus 339 ~~~~~~~~---------~~V~~l~~s~~g~~lasGs~dG------------------------------------~V~vw 373 (826)
..+..+. +...++.|||||+.||.++.|. +|++|
T Consensus 155 -~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 -IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp -TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred -ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 0000000 2234588999999888875332 47888
Q ss_pred ecCC---C---eeEEeeecc---cCCCCCeeEEEEeecccCCCCCcEEEEEEC----CCcEEEEECCCCc
Q 003360 374 DTEG---P---TVLYQKHIA---SDISSGIVSLQFETCSLQGFEKNFLVIATK----DSSVLVLDSDNGN 430 (826)
Q Consensus 374 D~~~---~---~~l~~~~~~---~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~----Dg~V~iwd~~tg~ 430 (826)
|+.+ + +.. ..... .++...+..+.|+| |+..++.... +..|++||..+|+
T Consensus 234 d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wsp------dg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 234 NTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWAT------QERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEE------TTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeC------CCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 8887 6 332 12111 02666789999999 6876665543 2379999999887
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=110.06 Aligned_cols=208 Identities=8% Similarity=0.033 Sum_probs=137.0
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC--ceeecc--------cccCCccee--eCC-CCCEEEEEE-CCCcEE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVP--PLLDFE--------TKLKDGSQS--HSK-VKNLFITGH-SDGAIN 256 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~--~~~~~~--------~~h~g~V~~--~s~-~~~~l~Tgs-~DGtVr 256 (826)
-.....+++.+++..+++.. ++.|..|+.... .+..+. ..+...... ++| +++++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 34678899999999777776 788999976543 333331 111222333 888 899999997 799999
Q ss_pred EEeCCCCceeeeeeccccccc--ccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPLFLLILSLKQQSEK--DFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~--~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+||..+... ..+...... ....+-.....|+++|+ +.++++...++.|++|+..++... ..
T Consensus 170 ~~~~~g~~~---~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-----~~-------- 233 (329)
T 3fvz_A 170 QFSPSGKFV---TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-----RE-------- 233 (329)
T ss_dssp EECTTSCEE---EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----EE--------
T ss_pred EEcCCCCEE---EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-----EE--------
Confidence 999766553 222110000 00011145899999998 677777778899999998743221 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEcc------CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 334 SHIIHSVKVMKINGSIISLNMNR------NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~------~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
+....+...+.+++|+| +|...++.+.+..|++||+.+++++..+.....+...+..+++++
T Consensus 234 ------~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~------ 301 (329)
T 3fvz_A 234 ------IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE------ 301 (329)
T ss_dssp ------ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT------
T ss_pred ------EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC------
Confidence 11112234578888888 333233333456899999999998865533335566789999998
Q ss_pred CCcEEEEEECCCcEEEEECC
Q 003360 408 EKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.++++...+++|++|+..
T Consensus 302 dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCC
Confidence 58777777889999999976
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-08 Score=103.76 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=138.0
Q ss_pred ecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+..+......++|+++++ .++++. ++.|..|+.... ...+ ..+.+.+.+ ++++++++++.+.++.|.+||....
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445566778999999998 666666 888999976654 4433 234455555 8999999988888899999999333
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEeCCCCCccccceEEEee
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---------------MVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---------------~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
....+.... . ......+..++++|+++++++.+..| .-.||.+...
T Consensus 101 ~~~~~~~~~-~-----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------------- 161 (296)
T 3e5z_A 101 EWESIADSF-E-----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------------- 161 (296)
T ss_dssp CEEEEECEE-T-----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-------------
T ss_pred cEEEEeecc-C-----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-------------
Confidence 322211110 0 01124577899999999888743211 2356666522
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCee-EEeeecccCCCCCeeEEEEeecccCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTV-LYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
+.. ............++|+|+|+.+++.+.++.|.+||+. .+++ ...... ......+..+++.+
T Consensus 162 ---g~~-----~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~----- 227 (296)
T 3e5z_A 162 ---GTL-----SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDA----- 227 (296)
T ss_dssp ---SCE-----EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBT-----
T ss_pred ---CCE-----EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECC-----
Confidence 111 1112223457899999999988777788999999996 4554 111111 22444566788887
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
++. |++++ ++.|.+||.. |+.+..+..+
T Consensus 228 -~G~-l~v~~-~~~v~~~~~~-g~~~~~~~~~ 255 (296)
T 3e5z_A 228 -GGL-IWASA-GDGVHVLTPD-GDELGRVLTP 255 (296)
T ss_dssp -TSC-EEEEE-TTEEEEECTT-SCEEEEEECS
T ss_pred -CCC-EEEEc-CCeEEEECCC-CCEEEEEECC
Confidence 466 55555 8899999987 8887776433
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-09 Score=113.48 Aligned_cols=201 Identities=9% Similarity=-0.049 Sum_probs=122.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee----eCCCCCEEEEEE---------------
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS----HSKVKNLFITGH--------------- 250 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs--------------- 250 (826)
+...+....|+|+++.|+.+. +..+.+|+............+.+.+.. +++++++++...
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 333444567999999999988 778999976554433332223333322 589999887432
Q ss_pred -------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCC------cEEEEEeCCCC
Q 003360 251 -------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSG------MVRIFKLKYEP 316 (826)
Q Consensus 251 -------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg------~V~iwd~~~~~ 316 (826)
.++.|.+||+.+..... + ..+...+..++|+| +++.|+....++ .|.+||.....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~---l--------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGESTV---I--------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEEE---E--------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred hhhhccCCcceEEEEECCCCceEE---e--------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 44679999985444222 1 12345789999999 999888777643 56666665321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeecc--CCeEEEEEccCCCEEEEEec-CC----eEEEEecCCCeeEEeeecccC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKIN--GSIISLNMNRNSQHLAVGSD-QG----YVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--~~V~~l~~s~~g~~lasGs~-dG----~V~vwD~~~~~~l~~~~~~~~ 389 (826)
. .....+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++........ .
T Consensus 228 ~----------------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~ 284 (388)
T 3pe7_A 228 M----------------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-A 284 (388)
T ss_dssp C----------------------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-C
T ss_pred e----------------------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-C
Confidence 1 1111112 24778899999998866543 22 3999999988754222211 1
Q ss_pred CC---CCeeEEEEeecccCCCCCcEEEEE---------ECCCcEEEEECCCCce
Q 003360 390 IS---SGIVSLQFETCSLQGFEKNFLVIA---------TKDSSVLVLDSDNGNM 431 (826)
Q Consensus 390 ~~---~~V~sl~f~~~~~~~~d~~~l~sg---------s~Dg~V~iwd~~tg~~ 431 (826)
+. .....+.|+| |+..|+.. ..+..|++||..+++.
T Consensus 285 ~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 285 CSHLMSNYDGSLMVG------DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEECTTSSEEEE------EECCC------------CCCCEEEEEETTTTEE
T ss_pred ceeeeecCCCCeEcc------CCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 00 0011135777 57666643 4466899999997765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-08 Score=104.66 Aligned_cols=239 Identities=11% Similarity=0.071 Sum_probs=142.1
Q ss_pred CccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-----------CCcEEEeccCC
Q 003360 154 SGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-----------DEDYSLLAKSV 222 (826)
Q Consensus 154 ~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----------d~~i~~w~~~~ 222 (826)
++.+++||..+. .....++.+..+ .++|+|+++.++++. ++.|.+|+...
T Consensus 30 d~~v~v~D~~t~-----------------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 30 ESRVHVYDYTNG-----------------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GCEEEEEETTTC-----------------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred cCeEEEEECCCC-----------------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 568999986551 112234444444 789999999998864 45699997654
Q ss_pred Ccee-ecccc--c---CCccee--eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeee-cccccccccccCCCCeEEEEE
Q 003360 223 PPLL-DFETK--L---KDGSQS--HSKVKNLFITGHS--DGAINFWDVSCPLFLLILS-LKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 223 ~~~~-~~~~~--h---~g~V~~--~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~-l~~~~~~~~~~h~~~V~~l~f 291 (826)
.... .+..+ + ...... ++|+|++|+++.. +++|.+||+..... +.. +. .. ....+.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~--------~~--~~~~v~~ 158 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTA--------AA--GCWSVIP 158 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGG--------GT--TEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEec--------CC--CcceeEE
Confidence 2222 22111 1 111222 9999999988874 68999999955442 233 22 11 1122455
Q ss_pred eCCC-CEEEEEeCCCcEEEEEeCCC-CCc---------c-ccce----------EEEeecCCCCeEEEEE-------EEE
Q 003360 292 DGTS-RVLVSGDQSGMVRIFKLKYE-PHA---------I-ENSF----------LSFTGSKKGNSHIIHS-------VKV 342 (826)
Q Consensus 292 sp~~-~~Lasgs~dg~V~iwd~~~~-~~~---------~-~~~~----------~~i~~s~~~~~~~~~~-------~~~ 342 (826)
.|++ ..+++.+.||.+.+|++... ... . .... ..+..+.++....+.- ...
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 6654 56677777888877777532 110 0 0000 0000011111000000 000
Q ss_pred eec-----------cCCeEEEEEccCCCEEEEEec-----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 343 MKI-----------NGSIISLNMNRNSQHLAVGSD-----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 343 ~~~-----------~~~V~~l~~s~~g~~lasGs~-----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ......++|++++.++.++.. .+.|.+||+.+++++.+... +. +.+++|+
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~s 313 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTID 313 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEE
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEEC
Confidence 000 011112789999888887654 34899999999998865542 22 8899999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCC--ceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNG--NMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg--~~i~~~ 435 (826)
| |+.+|++++. ++|.+||..++ +.+.++
T Consensus 314 p------dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 314 Q------QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp T------TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred C------CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9 6899998886 99999999999 888774
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-07 Score=97.80 Aligned_cols=212 Identities=10% Similarity=0.091 Sum_probs=135.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC----CcEEEEeC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD----GAINFWDV 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D----GtVriWD~ 260 (826)
+..+...+..++|+++++.++++. ++.|.+|+........+...+...+.+ ++++++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 445566778999999999777776 788999976554444332234556666 89999998888777 78999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
.+.....+ +.. ..+...+..++++|+++++++...+ +...||.+.... +..
T Consensus 120 ~~~~~~~~--~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---------------~~~-- 174 (333)
T 2dg1_A 120 NGDNLQDI--IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---------------RTV-- 174 (333)
T ss_dssp TSCSCEEE--ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---------------CCE--
T ss_pred CCCEEEEE--Ecc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---------------CEE--
Confidence 65553211 110 0133579999999999888776542 234556554211 011
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCC-CeeEEee--ec---ccCCCCCeeEEEEeecccCCCCC
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEG-PTVLYQK--HI---ASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~-~~~l~~~--~~---~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.........+..++|+|+|+.+++ .+.++.|.+||+.. +..+... .. ..++ ..+..+++++ ++
T Consensus 175 ---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~------~G 244 (333)
T 2dg1_A 175 ---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS------DD 244 (333)
T ss_dssp ---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT------TC
T ss_pred ---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC------CC
Confidence 111112235788999999986654 45678999999963 3322111 00 0111 3567788877 47
Q ss_pred cEEEEEECCCcEEEEECCCCceEEee
Q 003360 410 NFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.++++...++.|.+||.. ++.+..+
T Consensus 245 ~l~v~~~~~~~v~~~d~~-g~~~~~~ 269 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKR-GYPIGQI 269 (333)
T ss_dssp CEEEEEETTTEEEEECTT-SCEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-CCEEEEE
Confidence 766666677899999984 7776665
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-07 Score=98.28 Aligned_cols=238 Identities=9% Similarity=0.052 Sum_probs=154.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCeEEEecCCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSFILSSADEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~ 224 (826)
..+++...++.+++||..+= +....++.+. ..+..+.++|+|+.++ +.+..+..|+.....
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG-----------------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~ 67 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTK-----------------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRE 67 (276)
T ss_dssp EEEEECTTCSEEEEEETTTT-----------------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCE
T ss_pred cEEEeeCCCCEEEEEECCCC-----------------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCE
Confidence 45566677899999987441 1223334444 4678889999999888 446778888765544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
+..+..+....+.+ +.++|+++++.+. ++.|..+|..++.+ ..+.... ....+......+++.+++.++++.
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l---~~~~~~~--~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVL---SKTEFET--GIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEE---EEEEECC--SCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEE---EEEeccC--CCCcccccccCceECCCCCEEEEe
Confidence 55553322234444 8899999999888 78888888766653 2222110 011111244566789999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
..++.|..||.. ++. +........+.++.+.++|..+++++.++.|..+|..+++.+
T Consensus 143 ~~~~~v~~~d~~-G~~----------------------~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 143 FATSEVREIAPN-GQL----------------------LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp TTTTEEEEECTT-SCE----------------------EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cCCCEEEEECCC-CCE----------------------EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 999999999986 322 111222345667788899999999888899999999999999
Q ss_pred EeeecccC---CCCCeeEEEEeecccCCCCCcEEEEEEC----------CCcEEEEECCCCceEEeee
Q 003360 382 YQKHIASD---ISSGIVSLQFETCSLQGFEKNFLVIATK----------DSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 382 ~~~~~~~~---~~~~V~sl~f~~~~~~~~d~~~l~sgs~----------Dg~V~iwd~~tg~~i~~~~ 436 (826)
++...... ....+..+...+ ++.++++... ++.+.-++ .+|+.+-++.
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~------~G~i~v~~~~g~~~~~~~~~~~~~~~~~-~~g~~~W~~~ 260 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQ------NGGLYICNWQGHDREAGKGKHPQLVEID-SEGKVVWQLN 260 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECT------TSCEEEEEECTTCTTGGGSCCCSEEEEC-TTSBEEEEEC
T ss_pred EEecCCCCCCccccccccceEcC------CCCEEEEeccCccccccccCCceEEEEC-CCCCEEEEec
Confidence 77653211 112255555555 4777666531 22344444 3688887764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-06 Score=93.97 Aligned_cols=235 Identities=9% Similarity=0.076 Sum_probs=142.5
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-- 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-- 221 (826)
+..+++...++.+.++|..+. .....++. ...+..+.|+|+++++++++ |+.|.+|+..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~-----------------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY-----------------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC-----------------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred ceEEEEeCCCCeEEEEECCCC-----------------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 345556667799999998761 11122332 23466899999999999888 8899999763
Q ss_pred CCceeecccccCCccee--eC----CCCCEEEEE-ECCCcEEEEeCCCCceeeeeecccc--cccccccCC-CCeEEEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HS----KVKNLFITG-HSDGAINFWDVSCPLFLLILSLKQQ--SEKDFSLSG-IPLTALYY 291 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s----~~~~~l~Tg-s~DGtVriWD~s~~~~~~i~~l~~~--~~~~~~~h~-~~V~~l~f 291 (826)
....... .....+... ++ |+|++++++ ..+++|.|+|..... ++..+.-. .......|. ..|..+.+
T Consensus 229 t~~~v~~-i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 229 EPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SCCEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCcEeEE-EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEE
Confidence 3222211 111111122 88 699876665 456999999984333 22222210 001011122 36888999
Q ss_pred eCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCe
Q 003360 292 DGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGY 369 (826)
Q Consensus 292 sp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~ 369 (826)
++++..+++. ..+|.|.++|+..... .. +...........+.|+|+|+++++++ .++.
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------------~~---v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNN-----------------LK---TTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSE-----------------EE---EEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCcc-----------------ce---eeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 9987665554 5568999999863211 11 22222233467889999999887766 5789
Q ss_pred EEEEecCCCeeEEeeec-cc-CCCCCeeEEEE-eecccCCCCCcEEEEEE--CCCcEEEEECCC
Q 003360 370 VYLLDTEGPTVLYQKHI-AS-DISSGIVSLQF-ETCSLQGFEKNFLVIAT--KDSSVLVLDSDN 428 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~-~~-~~~~~V~sl~f-~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~t 428 (826)
|.+||+.+++++..... .. .|.. ....| .| ++..+++.+ .+++|.+||..+
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p------~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHP------TFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCT--TCEEEEET------TTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEECCCCcEEEEEeccCcCCCCc--cceeeECC------CCCcEEEeCCCCCCeEEEecCCC
Confidence 99999999988755543 11 1221 12233 44 344455444 468999999987
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=112.65 Aligned_cols=198 Identities=7% Similarity=-0.005 Sum_probs=124.6
Q ss_pred EEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCcce-e-eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 195 ITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQ-S-HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~-~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
+..++|+|+|+.++... ++ .+.+|+........+..++..... . |+|+++.|+.++.++.|++||+.+.....+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 55678999999988764 33 466666554444433222222232 2 899999999999999999999955543332
Q ss_pred eecccccccccccCCCCeEE-------------------EEEeCCCCEEEEE-----eCCCcEEEEEeCCCCCccccceE
Q 003360 269 LSLKQQSEKDFSLSGIPLTA-------------------LYYDGTSRVLVSG-----DQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~-------------------l~fsp~~~~Lasg-----s~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
.... ...... +.|+|+++.++.+ ..+..|.+||+.++..
T Consensus 118 ~~~~----------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~------- 180 (396)
T 3c5m_A 118 YTVD----------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL------- 180 (396)
T ss_dssp EECC----------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-------
T ss_pred Eecc----------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE-------
Confidence 2221 111111 3457777766554 3556788888764322
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecC------CeEEEEecCCCeeEEeeecccCC-CCCeeE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQ------GYVYLLDTEGPTVLYQKHIASDI-SSGIVS 396 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~d------G~V~vwD~~~~~~l~~~~~~~~~-~~~V~s 396 (826)
.....+...+..+.|+| ++..|+..+.+ ..|.+||+.++.... +.... ...+..
T Consensus 181 ---------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~ 242 (396)
T 3c5m_A 181 ---------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK---IKEHAEGESCTH 242 (396)
T ss_dssp ---------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE---SSCCCTTEEEEE
T ss_pred ---------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE---eeccCCCccccc
Confidence 11223456789999999 78878777654 368889987665431 11111 235777
Q ss_pred EEEeecccCCCCCcEEEEEECC-----CcEEEEECCCCceEE
Q 003360 397 LQFETCSLQGFEKNFLVIATKD-----SSVLVLDSDNGNMLS 433 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~D-----g~V~iwd~~tg~~i~ 433 (826)
+.|+| |+..|+.++.+ +.|++||+.+|+...
T Consensus 243 ~~~sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 243 EFWIP------DGSAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp EEECT------TSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred eEECC------CCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 89998 68877766544 459999999887543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=104.35 Aligned_cols=155 Identities=9% Similarity=0.017 Sum_probs=93.1
Q ss_pred ccCCCEEEEEEee-CCCeEEEec-C------CcEEEeccCCCceeecccccC-C-ccee--eCCCCCEEEEEECC-----
Q 003360 190 FLDSSITAMKLIT-GNSFILSSA-D------EDYSLLAKSVPPLLDFETKLK-D-GSQS--HSKVKNLFITGHSD----- 252 (826)
Q Consensus 190 ~h~~~Vt~~~fs~-~~~~l~~~~-d------~~i~~w~~~~~~~~~~~~~h~-g-~V~~--~s~~~~~l~Tgs~D----- 252 (826)
.+...+..+.|+| ++..++... + ..+.+|+........+ ..+. + .+.. |+|+++.|+.++.+
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-eccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 4566788999999 788776644 2 2455555443333333 1222 1 2433 99999977766554
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEe----------------CCCcEEEEEeCCC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGD----------------QSGMVRIFKLKYE 315 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs----------------~dg~V~iwd~~~~ 315 (826)
+.|.+||+.......+.... ... +.|+| +++++++++ .++.|.+||+.++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP------------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC------------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ceEEEEECCCCCeEEeeeCC------------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 45999999554432221111 123 88999 999888765 3467999998744
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccC-----------CeEEEEEccCCCEEEEEec-CCe--EEEEecCCCee
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKING-----------SIISLNMNRNSQHLAVGSD-QGY--VYLLDTEGPTV 380 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-----------~V~~l~~s~~g~~lasGs~-dG~--V~vwD~~~~~~ 380 (826)
... ....+.. .+..++|+|+|+.|++++. ++. |.++|+.++..
T Consensus 331 ~~~----------------------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 331 SAQ----------------------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BCC----------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ceE----------------------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 320 1111111 2566789999998887775 444 44555555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-07 Score=98.99 Aligned_cols=194 Identities=9% Similarity=0.062 Sum_probs=130.8
Q ss_pred CCCeEEEec-CCcEEEeccCC-CceeecccccC-Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSV-PPLLDFETKLK-DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~-g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~ 277 (826)
.++.+++++ ++.|.+|+... ..+..+. .+. ..+.+ +.|+|++|+ +.++.|..||.++.. +..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~---~W~~~~---- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRE---LWNIAA---- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCE---EEEEEC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCE---EEEEcC----
Confidence 356677777 99999998743 3344442 222 23444 899999999 457889999996554 233331
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+...+.++.+.++++++++.+. ++.|..++.. ++ .+..+...... .........+++.+
T Consensus 74 ---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-----~l~~~~~~~~~----------~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 74 ---PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GE-----VLSKTEFETGI----------ERPHAQFRQINKNK 134 (276)
T ss_dssp ---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-----EEEEEEECCSC----------SSGGGSCSCCEECT
T ss_pred ---CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CC-----EEEEEeccCCC----------CcccccccCceECC
Confidence 12246888999999999999887 6666655542 11 11111110000 01122345567899
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
+|.++++.+.++.|.+||.. ++.+++.... ..+.++.+.+ +++++++++.++.|..||..+|+.+.++.
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~------~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLS----GTPFSSAFLD------NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECS----SCCCEEEECT------TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecCCCEEEEECCC-CCEEEEEECC----CCccceeEcC------CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99999999999999999998 8888766532 3444555555 58888888888899999999999998874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-07 Score=111.27 Aligned_cols=154 Identities=8% Similarity=-0.051 Sum_probs=96.7
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCC------CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSC------PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--- 304 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~------~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--- 304 (826)
|+|+|++|+.++. +..|.+||+.. +.. ....+ ..+...+.. .|+|++..|+..+..
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l--------~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKL--------IDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEE--------ECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEe--------eCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 9999998888765 56899999843 210 00111 123334444 488898887766553
Q ss_pred -CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc--CCeEEEEEccCCCEEEEEecCCe--EEEEecCCCe
Q 003360 305 -GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN--GSIISLNMNRNSQHLAVGSDQGY--VYLLDTEGPT 379 (826)
Q Consensus 305 -g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--~~V~~l~~s~~g~~lasGs~dG~--V~vwD~~~~~ 379 (826)
+.|.+|++.+.... .. .....+. ..+..++|++++.+++++..||. |.+||+.+++
T Consensus 310 ~~~l~~~d~~~~~~~---~~----------------~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEES---KW----------------KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TCEEEEEETTSCCGG---GC----------------EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCcc---cc----------------eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 35888888743210 00 1111222 24778899988878888888985 5667776676
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEE-EEEC---CCcEEEEECCCCc
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV-IATK---DSSVLVLDSDNGN 430 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~---Dg~V~iwd~~tg~ 430 (826)
.+.... .+...|..+.+++ ++..++ +.++ .++|+.||+.+|+
T Consensus 371 ~~~~l~---~~~~~v~~~~~s~------d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 LLKIFP---LEVGSVVGYSGQK------KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEC---CCSSEEEEEECCT------TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecC---CCCceEEEEecCC------CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 554333 2355677787876 455444 4333 4689999999887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=109.51 Aligned_cols=172 Identities=11% Similarity=0.113 Sum_probs=120.5
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCc---------eee-cccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPP---------LLD-FETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~---------~~~-~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+++.+++++....+++|+...+.+|+..... +.. ...++.+ |.. | ++++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6888999999999999984455558532111 111 1234556 777 7 99999999 88999999984
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... .. ....|..+|..+.+.+.. +++++.||.|.+||+..+.. ..
T Consensus 115 sl~~--~~--------~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~----------------------~~ 160 (388)
T 1xip_A 115 ELSE--FR--------TVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST----------------------KQ 160 (388)
T ss_dssp STTC--EE--------EEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE----------------------EE
T ss_pred hhhc--cC--------ccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc----------------------cc
Confidence 3221 01 112345568887776553 99999999999999984322 11
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee--EEeeec----cc--CCCCCeeEEEEeecccCCCCCcEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV--LYQKHI----AS--DISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~--l~~~~~----~~--~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
+...|+|++|||.| +++|..||++++|+..+..+ ..+... .. +|...|.++.|.+ ++.+++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~------~~~flv 229 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS------PQDFLA 229 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS------SSEEEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec------CCeEEE
Confidence 24579999999999 78899999999999988775 322311 11 3678899999998 366666
Q ss_pred E
Q 003360 414 I 414 (826)
Q Consensus 414 s 414 (826)
+
T Consensus 230 ~ 230 (388)
T 1xip_A 230 V 230 (388)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.89 E-value=4e-07 Score=96.14 Aligned_cols=222 Identities=9% Similarity=0.023 Sum_probs=140.2
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++.+..+.|+.||... . ...+..+...+.+++++++++.+++.. ++.|.+|+......
T Consensus 42 l~~~~~~~~~i~~~~~~~----------------~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDG----------------Q---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp EEEEEGGGTEEEEEETTS----------------C---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred EEEEeCCCCEEEEEECCC----------------C---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 345666778899888765 1 112344566789999999999877766 67899997644333
Q ss_pred eecccccC----Cccee--eCCCCCEEEEEEC-----------------CCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 226 LDFETKLK----DGSQS--HSKVKNLFITGHS-----------------DGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 226 ~~~~~~h~----g~V~~--~s~~~~~l~Tgs~-----------------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
..+..... ..+.. ++++|++++|... .+.|..||.. ..... + ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~---~--------~~~ 170 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA---P--------IRD 170 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE---E--------ECC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE---e--------ecC
Confidence 33311111 12333 8999999998331 2344444444 22111 1 122
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce-EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF-LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~-~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
...+..++|+|+++.|++.+.++.|.+|++..... + . ... .. ....+.+.+|+++++|.++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-----~~~---------~~~---~~-~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-----TEY---------QGV---HF-TVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-----EEE---------EEE---EE-CCSSSCCCSEEEBTTSCEE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-----CcC---------CCe---Ee-eCCCCCCCeEEECCCCCEE
Confidence 34678999999999997777889999999962100 1 0 000 11 1234456789999999865
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
++. ++.|.+||.. ++.+.... .+.. +++++|. + ++..|++++.++ +.-++..+.++
T Consensus 233 v~~--~~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~------d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 233 ASA--GDGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGP------EGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEE--TTEEEEECTT-SCEEEEEE---CSSC-CCEEEEEST------TSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEc--CCeEEEECCC-CCEEEEEE---CCCC-ceeEEEECC------CCCEEEEEcCCe-EEEEEcccccc
Confidence 555 8889999996 55553333 2333 8889995 4 578899988764 66667665543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-07 Score=93.22 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=125.9
Q ss_pred CEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 194 SITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
....+++.+++...+ +.. ++.|..|+............+...+.+ ++++++++++.. ++.|.+||..+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-- 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-- 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--
Confidence 567888999998665 434 778888865443322221122223344 888999777766 8999999986554211
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
+. ......+..+++++++.++++...++.|.+|+..+.... .........+
T Consensus 102 -~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~~p 152 (270)
T 1rwi_B 102 -LP-------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---------------------VLPFTGLNDP 152 (270)
T ss_dssp -CC-------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE---------------------ECCCCSCCSC
T ss_pred -ee-------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE---------------------eeccccCCCc
Confidence 11 011257899999999998887777888988864422110 0000112346
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+|+++++|.++++...++.|.+||..+....... ......+..+++.+ ++.++++...++.|.+|+..+.
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~------~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---FTDITAPWGIAVDE------AGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---CSSCCSEEEEEECT------TCCEEEEETTTSCEEEECTTCS
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---ccCCCCceEEEECC------CCCEEEEECCCCcEEEEcCCCC
Confidence 88999999987777777889999999877654221 12225678888887 4655555556789999998754
Q ss_pred c
Q 003360 430 N 430 (826)
Q Consensus 430 ~ 430 (826)
.
T Consensus 224 ~ 224 (270)
T 1rwi_B 224 T 224 (270)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-06 Score=94.59 Aligned_cols=136 Identities=12% Similarity=0.038 Sum_probs=88.0
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccccccc--CCCCeEEEEEeCCCCEEEEEeC-----------CC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSL--SGIPLTALYYDGTSRVLVSGDQ-----------SG 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~--h~~~V~~l~fsp~~~~Lasgs~-----------dg 305 (826)
+++++..++..+.+|.|.+||+.......+..+.......... .......++|+|++..++++.. ++
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 5667777777788999999999544322211111000000000 0011223789999888777643 35
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQ 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~ 383 (826)
.|.+||+.+.+. +....... +.+++|+|+|++|++++. ++|.|||..++ +++.+
T Consensus 287 ~v~viD~~t~~~----------------------v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 287 EIWVMDTKTKQR----------------------VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp EEEEEETTTTEE----------------------EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred eEEEEECCCCcE----------------------EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 899999874422 33334445 899999999999998887 99999999999 87744
Q ss_pred eecccCCCCCeeEEEEee
Q 003360 384 KHIASDISSGIVSLQFET 401 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~ 401 (826)
.. ........+.+.|
T Consensus 343 i~---~~G~~P~~~~~~p 357 (361)
T 2oiz_A 343 IE---GAAEASLQVQFHP 357 (361)
T ss_dssp ET---TSCSSEEEEEECC
T ss_pred ec---cCCCCcEEEEecC
Confidence 32 3445667788877
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-07 Score=108.39 Aligned_cols=208 Identities=6% Similarity=-0.030 Sum_probs=133.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CC----cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCc--------
Q 003360 191 LDSSITAMKLITGNSFILSSA--DE----DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA-------- 254 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~----~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt-------- 254 (826)
|...+..++|+|||+.++.+. ++ .|++|+............+. .+.+ |+||++.|+.++.|+.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334688899999999998755 22 78888766544443211111 1333 9999999999988877
Q ss_pred --------EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCC-----
Q 003360 255 --------INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKY----- 314 (826)
Q Consensus 255 --------VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~----- 314 (826)
|++|++.+... .+++.. ..|...+..+.|+|++++|+.++. +..|.+||+.+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEF--------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCCCEEEEEECCCCcccceEEecc--------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999944331 111111 123456789999999999888765 56899999874
Q ss_pred -CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC----CeEEEEecCCCee--EEeeecc
Q 003360 315 -EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ----GYVYLLDTEGPTV--LYQKHIA 387 (826)
Q Consensus 315 -~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d----G~V~vwD~~~~~~--l~~~~~~ 387 (826)
+.. .. .....+...+.. .|+++|..|++.+.. +.|.+||+.++.. .....
T Consensus 274 ~~~~---------------~~-----~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-- 330 (710)
T 2xdw_A 274 TGIL---------------KW-----VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-- 330 (710)
T ss_dssp CSSC---------------CC-----EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--
T ss_pred CCcc---------------ce-----EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--
Confidence 210 01 112222333444 488899888776653 3699999987641 11111
Q ss_pred cCCC-CCeeEEEEeecccCCCCCcEEEEEECCC--cEEEEECCCCceEEeee
Q 003360 388 SDIS-SGIVSLQFETCSLQGFEKNFLVIATKDS--SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 388 ~~~~-~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--~V~iwd~~tg~~i~~~~ 436 (826)
.... ..+..+.|.+ ++.++++...|+ .|.+|+..+|+.+..+.
T Consensus 331 ~~~~~~~~~~~~~~~------~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 331 PEHEKDVLEWVACVR------SNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CCCSSCEEEEEEEET------TTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCCCCeEEEEEEEc------CCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 1222 3577788875 367778888888 46778887788766653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-07 Score=94.77 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=131.7
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
..+..+++.+++...++..++.|..|+........+.........+ ++++++++++...++.|.+||........
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--- 143 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--- 143 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---
Confidence 3567788999988555544778888876554433331122233444 88899999888889999999873332100
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCe
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSI 349 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V 349 (826)
.. ......+..|+++++++++++...++.|.+|+...... ... ......+
T Consensus 144 ~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~~p 194 (270)
T 1rwi_B 144 LP-------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----------------------VVLPFTDITAP 194 (270)
T ss_dssp CC-------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE----------------------EECCCSSCCSE
T ss_pred ec-------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce----------------------EeecccCCCCc
Confidence 01 01123578899999999777777788999999763321 100 0112457
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+|+++++|.++++...++.|.+||..+..... ....+...+.++++.+ ++.++++...+++|++|+....
T Consensus 195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~~~~~p~~i~~~~------~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFTGLNTPLAVAVDS------DRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCCSCSCEEEEEECT------TCCEEEEEGGGTEEEEECCCGG
T ss_pred eEEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccCCCCCceeEEECC------CCCEEEEECCCCEEEEEcCCCc
Confidence 899999999777777778899999997665442 1122335688899987 5777777778999999998743
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-06 Score=86.09 Aligned_cols=200 Identities=7% Similarity=0.023 Sum_probs=131.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+...+..+++.+++...++.. ++.+..|+... ....+..+ ....+.+ +.++++++++...++.|.+||..+...
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~ 132 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIR 132 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence 3456788999999998777766 67788886542 22222111 2233444 788999999888889999999844331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
. ..+. .+...+..+++.+++.++++...++.|..||. .+.. .. ......
T Consensus 133 -~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~--------------~~~~~~ 181 (299)
T 2z2n_A 133 -E-YELP--------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TE--------------FKIPTP 181 (299)
T ss_dssp -E-EECS--------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EE--------------EECSST
T ss_pred -E-ecCC--------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EE--------------eeCCCC
Confidence 1 1111 12357899999999988887777788888887 3221 00 101111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...+.+++++++|.+.++...++.|.+||. ++.... ... ......+.++.+.+ ++.++++...++.|..||
T Consensus 182 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 182 ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGA------GIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECS------TTCEEEEETTTTEEEEEE
T ss_pred CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECC------CCCEEEeccCCceEEEEC
Confidence 335789999999987666667889999999 666442 211 23445788899987 466444444678999999
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
. ++..
T Consensus 253 ~-~g~~ 257 (299)
T 2z2n_A 253 S-NNII 257 (299)
T ss_dssp T-TTEE
T ss_pred C-CCce
Confidence 8 4643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-06 Score=86.78 Aligned_cols=203 Identities=5% Similarity=0.008 Sum_probs=136.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
++.+...+.++++.+++...++.. ++.+..|+.. .....+..+ +...+.+ +.++++++++...++.|..||..+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 455667899999999998777666 6788888765 344433211 2344445 7889999888887899999998643
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. . ..+. .....+..+++.+++.++++...++.|.+||.. +.. .. ....
T Consensus 89 ~~-~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~------~~--------------~~~~ 137 (299)
T 2z2n_A 89 IK-E-YTLP--------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKI------RE--------------YELP 137 (299)
T ss_dssp EE-E-EECS--------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE------EE--------------EECS
T ss_pred EE-E-EeCC--------CcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCE------EE--------------ecCC
Confidence 21 1 1111 123578999999999888887778889888862 211 00 1111
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.....+.++++.++|.+.++...++.|.+||. +++... ... ......+..+++.+ ++.++++...++.|.+
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~------~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKI-PTPASGPVGITKGN------DDALWFVEIIGNKIGR 208 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT------TSSEEEEETTTTEEEE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECC------CCCEEEEccCCceEEE
Confidence 12345889999999987777777889999999 666542 111 22344677888887 4665444445788999
Q ss_pred EECCCCceE
Q 003360 424 LDSDNGNML 432 (826)
Q Consensus 424 wd~~tg~~i 432 (826)
||. +++..
T Consensus 209 ~~~-~g~~~ 216 (299)
T 2z2n_A 209 ITT-SGEIT 216 (299)
T ss_dssp ECT-TCCEE
T ss_pred ECC-CCcEE
Confidence 999 67754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-07 Score=98.72 Aligned_cols=186 Identities=11% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCEEEEEEeeCCCeEEEec-C---CcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEECC------------
Q 003360 193 SSITAMKLITGNSFILSSA-D---EDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD------------ 252 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d---~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D------------ 252 (826)
..+...+|+|+|+.++..+ + +...+| +........+ ..+.. +.+ |+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-EEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 4678899999999998866 3 444444 4443333333 22223 555 99999988887643
Q ss_pred ---------------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-------cEEEE
Q 003360 253 ---------------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-------MVRIF 310 (826)
Q Consensus 253 ---------------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-------~V~iw 310 (826)
..|.+||+.+... +..+. . . .+..++|+|++ +++++..++ ...||
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~--------~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFE--------K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE--EEEEE--------E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeE--Eeeec--------C-C-CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 5688899855542 01121 1 2 56789999999 888776653 45666
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC--------CeEEEEecCCCeeEE
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ--------GYVYLLDTEGPTVLY 382 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d--------G~V~vwD~~~~~~l~ 382 (826)
.+.++. . .....+ ..+.++ +|+|++|++++.+ ..|.+|| +++..
T Consensus 204 ~~d~~~-----------------~-----~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~- 255 (347)
T 2gop_A 204 IWEDGK-----------------E-----EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM- 255 (347)
T ss_dssp EEETTE-----------------E-----EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-
T ss_pred EeCCCc-----------------e-----EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-
Confidence 654111 1 111112 344444 9999999887754 4688888 45443
Q ss_pred eeecccCCCCCeeE-EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 383 QKHIASDISSGIVS-LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 383 ~~~~~~~~~~~V~s-l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.+...+...+.. +.|+ . + ++++++.++.+++| ..+|+..
T Consensus 256 --~l~~~~~~~~~~~~~~s-d------g-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 256 --GILDEVDRGVGQAKIKD-G------K-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp --ESSTTCCSEEEEEEEET-T------E-EEEEEEETTEEEEE-EESSSEE
T ss_pred --eccccCCcccCCccEEc-C------c-EEEEEecCCcEEEE-EcCCceE
Confidence 222345556665 6665 2 6 88899999999999 7766653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.6e-07 Score=106.86 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=124.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEe-----c-CCcEEEeccCCCceeecccccCCcc--ee--eCCCCCEEEEEECCCc-----
Q 003360 190 FLDSSITAMKLITGNSFILSS-----A-DEDYSLLAKSVPPLLDFETKLKDGS--QS--HSKVKNLFITGHSDGA----- 254 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~-----~-d~~i~~w~~~~~~~~~~~~~h~g~V--~~--~s~~~~~l~Tgs~DGt----- 254 (826)
.|...+..++|||||+.++.+ + +..|++|+......... .+...+ .. |+|+++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 344568899999999999853 2 35799997665443301 111222 22 9999999999999887
Q ss_pred --------EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeCCCCCccccc
Q 003360 255 --------INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLKYEPHAIENS 322 (826)
Q Consensus 255 --------VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~~~~~~~~~~ 322 (826)
|++|++.+... .+++.. ..+...+..+.|+|++++|+.++.++ ...||-+...
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~------- 260 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHER--------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG------- 260 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECC--------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEec--------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-------
Confidence 99999944431 122211 12345788999999999888877665 3444443211
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cCCeEEEEecCCCee---EEeeecccCCCCCeeE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQGYVYLLDTEGPTV---LYQKHIASDISSGIVS 396 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~dG~V~vwD~~~~~~---l~~~~~~~~~~~~V~s 396 (826)
.+.. .....+...+....+ ++|.+++... .++.|.+||+.++.. ..... ......+..
T Consensus 261 --------~~~~-----~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~ 324 (695)
T 2bkl_A 261 --------EKDF-----RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLS 324 (695)
T ss_dssp --------CSSC-----EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEE
T ss_pred --------CCce-----EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEE
Confidence 1111 122223344555556 5666444443 258999999977642 11111 112445666
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEe
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~ 434 (826)
+.|.. +.++++...|+..++|... +|+.+..
T Consensus 325 ~~~~~-------~~lv~~~~~dg~~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 325 VSIVG-------GHLSLEYLKDATSEVRVATLKGKPVRT 356 (695)
T ss_dssp EEEET-------TEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred EEEEC-------CEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence 77753 7788888999987777544 3554444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-07 Score=95.11 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=142.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++...++.|.+||..+.+ ....++ .......++++++++..++.. ++.|.+|+.....+.
T Consensus 57 yv~~~~~~~v~viD~~t~~-----------------~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 57 WIVVNNSHVIFAIDINTFK-----------------EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp EEEEGGGTEEEEEETTTCC-----------------EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred EEEEcCCCEEEEEECcccE-----------------EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 3444456889999987621 111122 235678889999985555553 888999976654333
Q ss_pred e-ccccc----CCccee--eCCCCCEEEEEE-CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 227 D-FETKL----KDGSQS--HSKVKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 227 ~-~~~~h----~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
. +..+. ...... + .++.++++.. .+++|.+||...... +..+. . +.....+.++|+++++
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~--~~~i~--------~-g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV--VDELT--------I-GIQPTSLVMDKYNKMW 186 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE--EEEEE--------C-SSCBCCCEECTTSEEE
T ss_pred EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE--EEEEE--------c-CCCccceEEcCCCCEE
Confidence 2 21111 001222 4 4455556554 489999999954442 12222 1 1244678899999877
Q ss_pred EEEeCC----------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEEccCCCEEEEEec
Q 003360 299 VSGDQS----------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 299 asgs~d----------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~s~~g~~lasGs~ 366 (826)
+++..+ +.|.+||..++.. ...... ......|+|+|++++|.++..
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v----------------------~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTV----------------------EKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEE----------------------EEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEECCCccCCccccCCceEEEEECCCCeE----------------------EEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 776654 7899999874321 111111 235899999999998888765
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE----ECCCcEEEEECCCCceEEeee
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA----TKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg----s~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.|.+||..++++.. .............++++|. ++.+.++. ..++.|.+||.. |+.+.++.
T Consensus 245 --~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~-----~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 245 --DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN-----NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp --SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT-----TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred --EEEEEECCCCceee-eeeecCCCCceEEEEEcCC-----CCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 89999998887641 1111112456788999873 24444444 468899999998 99888864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-06 Score=96.24 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=106.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC--CCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK--YEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~--~~~ 316 (826)
..+.+.++++...+++|.+||...... +..+. .+..+..+.|+|+++++++++.|+.|.+||+. +..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v--~~~i~---------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEI--KTVLD---------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCE--EEEEE---------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeE--EEEEe---------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 344556788888899999999954442 22222 22467799999999999999999999999985 221
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc----cCCCEEEEEec-CCeEEEEecCCCeeEEeeecccC--
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN----RNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASD-- 389 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s----~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~-- 389 (826)
. +...........++|+ |+|++++++++ +++|.|||..+.+++........
T Consensus 232 ~----------------------v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 232 T----------------------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp E----------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred E----------------------eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 1 2222223346789999 69998877665 59999999999988865543210
Q ss_pred -----C-CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 390 -----I-SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 390 -----~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
| ...+..+.+++. ...+++....+|.|.++|..+.+
T Consensus 290 ~~~~~~p~~rva~i~~s~~-----~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHY-----RPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TTCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEETTCSS
T ss_pred ccccccCCCceEEEEEcCC-----CCEEEEEecCCCeEEEEecCCCc
Confidence 1 124666777662 24455555667899999987654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-05 Score=85.57 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=133.2
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C----CcEEEeccCCC
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D----EDYSLLAKSVP 223 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d----~~i~~w~~~~~ 223 (826)
++....+.|++||...- ..... ...+...+.+++++++++.+++.. + +.|.+|+....
T Consensus 60 ~~~~~~~~i~~~d~~~~----------------~~~~~-~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETK----------------EIKRP-FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp EEETTTCEEEEECTTTC----------------CEEEE-EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred EEECCCCEEEEEeCCCC----------------cEEEE-eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 34566788999987541 00111 123456799999999998777765 4 47888875544
Q ss_pred ceeec-c-cccCCccee--eCCCCCEEEEEEC------CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 224 PLLDF-E-TKLKDGSQS--HSKVKNLFITGHS------DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 224 ~~~~~-~-~~h~g~V~~--~s~~~~~l~Tgs~------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
....+ . ..+...+.+ ++++++++++... .+.|..||..+..... +. .+...+..++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~--------~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP---II--------QNISVANGIALST 191 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE---EE--------EEESSEEEEEECT
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE---ee--------cCCCcccceEECC
Confidence 33322 1 122334444 8999998887654 2455556654433211 11 1113578999999
Q ss_pred CCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 294 TSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 294 ~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
+++.|++ .+.++.|.+|++..... .+..+. ... .........+..++++++|.++++...++.|.+
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~----~~~~~~------~~~---~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGV----TIQPFG------ATI---PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSS----SEEEEE------EEE---EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCc----Cccccc------ceE---EEecCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 9986654 45678999999863211 000000 000 000011135788999999988777778899999
Q ss_pred EecCCCeeEEeeeccc---CCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 373 LDTEGPTVLYQKHIAS---DISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
||.. ++.+....... ++...+.+++|++ |+..|++++.++
T Consensus 259 ~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~------dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP------GTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEEEEEECTTGGGTCSCBCCEEEECT------TSCEEEEEEECG
T ss_pred ECCC-CCEEEEEEcCCCccccccCcceEEECC------CCCEEEEEeCcc
Confidence 9984 55553333211 1222678899986 577788777664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-06 Score=90.89 Aligned_cols=143 Identities=6% Similarity=-0.009 Sum_probs=91.6
Q ss_pred CEEEEEEeeCCCeEEEec-CC-------cEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECC--------CcEEE
Q 003360 194 SITAMKLITGNSFILSSA-DE-------DYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD--------GAINF 257 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~-------~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~D--------GtVri 257 (826)
.+..+.|+|++ .++++. +. ...+|.........+ ..+ +.+.+++|+|+.|+.++.+ ..|.+
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l-~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM-FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE-EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe-ccC-cceeeECCCCCEEEEEEccccCCccccceEEE
Confidence 67788999999 766664 32 445663222233333 223 3333478999988877754 36778
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEE-EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTA-LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~-l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|| ++... .+. ..+...|.. +.|+ ++ ++++++.++.++|| +..+. .
T Consensus 249 ~d-~~~~~----~l~-------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-----------------~-- 294 (347)
T 2gop_A 249 YD-GKEVM----GIL-------DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-----------------I-- 294 (347)
T ss_dssp EC-SSCEE----ESS-------TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-----------------E--
T ss_pred EC-CCceE----ecc-------ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-----------------e--
Confidence 88 43321 111 234467776 8999 88 99999999999999 86211 1
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE-EEEecCCCe
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV-YLLDTEGPT 379 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V-~vwD~~~~~ 379 (826)
.......+.|.+++|++ .++++++.++.. .||.+. ++
T Consensus 295 ---~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 295 ---KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ---EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred ---EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 22223356689999999 577777777664 677665 44
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-06 Score=89.86 Aligned_cols=197 Identities=9% Similarity=0.002 Sum_probs=121.4
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
...+.+. .++..++.. ++.+.+|+......... .+....... ++++++++++...++.|.+||....... ..+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~-i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i 121 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR-ITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYI 121 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-EECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-cCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEE
Confidence 4555553 333334444 78899997765444322 121222333 7688876666658999999999554421 122
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
... .-.........|++ ++..|.++. .++.|.+||..++.. ..........
T Consensus 122 ~~g---~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~----------------------~~~i~~g~~p 174 (328)
T 3dsm_A 122 ECP---DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV----------------------VDELTIGIQP 174 (328)
T ss_dssp ECT---TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE----------------------EEEEECSSCB
T ss_pred EcC---CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE----------------------EEEEEcCCCc
Confidence 210 00001113446666 344555554 488999999984422 1222223345
Q ss_pred EEEEEccCCCEEEEEecC----------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 350 ISLNMNRNSQHLAVGSDQ----------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~d----------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..++++++|++++++..+ +.|.+||..++++....... ....+..++|++ |+..|+++..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~------d~~~lyv~~~-- 244 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNG------TRDTLYWINN-- 244 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECT------TSCEEEEESS--
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEec------CCCEEEEEcc--
Confidence 678999999866666554 78999999999877544432 123678899998 5888888755
Q ss_pred cEEEEECCCCceE
Q 003360 420 SVLVLDSDNGNML 432 (826)
Q Consensus 420 ~V~iwd~~tg~~i 432 (826)
.|.+||..+++..
T Consensus 245 ~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 245 DIWRMPVEADRVP 257 (328)
T ss_dssp SEEEEETTCSSCC
T ss_pred EEEEEECCCCcee
Confidence 8999999988764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-05 Score=84.80 Aligned_cols=207 Identities=13% Similarity=0.001 Sum_probs=124.5
Q ss_pred ecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+...........|+++++ .+++.. ++.+..|+... ....+ ..+.+.+.. ++++|+++++.+.++.|.+||..+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~ 117 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TVDVL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ 117 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CEEEE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CEEEE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCCCC
Confidence 444555667889999998 455555 77888886533 33333 223344444 8999998887777789999998643
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEEeCCCCCccccceEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS----GDQ-------------SGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las----gs~-------------dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
.. .+.... . ......+..++++|+++++++ |.. .+.|..|+..++..
T Consensus 118 ~~-~~~~~~-~-----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--------- 181 (305)
T 3dr2_A 118 AH-LLVGRY-A-----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--------- 181 (305)
T ss_dssp EE-EEECEE-T-----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---------
T ss_pred EE-EEEecc-C-----CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---------
Confidence 31 111100 0 011145778999999998886 432 13344444322211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC------CeEEEEecCCCeeEEeee-cccCCCCCeeEEEE
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ------GYVYLLDTEGPTVLYQKH-IASDISSGIVSLQF 399 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d------G~V~vwD~~~~~~l~~~~-~~~~~~~~V~sl~f 399 (826)
.. +. .......++|+|+++.|+++... +.|.+||+.... +.... ........+..+.+
T Consensus 182 --------~~---~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 182 --------QR---MA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp --------EE---EE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE
T ss_pred --------EE---Ee---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE
Confidence 11 11 22346789999999988877665 789999997654 21111 11111223445666
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+ +++ |++++.++ |.+|+.. |+.+..+.
T Consensus 247 d~------~G~-lwv~~~~g-v~~~~~~-g~~~~~~~ 274 (305)
T 3dr2_A 247 DR------GGW-LWSSSGTG-VCVFDSD-GQLLGHIP 274 (305)
T ss_dssp CT------TSC-EEECCSSE-EEEECTT-SCEEEEEE
T ss_pred CC------CCC-EEEecCCc-EEEECCC-CCEEEEEE
Confidence 66 466 67766555 9999985 88777654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-05 Score=85.12 Aligned_cols=209 Identities=10% Similarity=0.079 Sum_probs=126.5
Q ss_pred CCEEEEEEeeCCCeEEE-------ec-CCcEEEeccCCCceeeccc----ccCCccee--eCCC-CCEEEEEECCCcEEE
Q 003360 193 SSITAMKLITGNSFILS-------SA-DEDYSLLAKSVPPLLDFET----KLKDGSQS--HSKV-KNLFITGHSDGAINF 257 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~-------~~-d~~i~~w~~~~~~~~~~~~----~h~g~V~~--~s~~-~~~l~Tgs~DGtVri 257 (826)
.....++|.+++..+++ +. ++.|..|+........+.. ++.+.+.+ ++++ ++++++... +.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEE
Confidence 45578889988887777 34 7889999754434433311 13344555 7888 776666554 47889
Q ss_pred EeCCCCceeeeeec-ccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-------------cEEEEEeCCCCCccccce
Q 003360 258 WDVSCPLFLLILSL-KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-------------MVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 258 WD~s~~~~~~i~~l-~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-------------~V~iwd~~~~~~~~~~~~ 323 (826)
||.. ..... + ... .. ......+.+++++++++++++...++ ...||.+...
T Consensus 97 ~d~~-g~~~~---~~~~~-~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 161 (314)
T 1pjx_A 97 VQTD-GTFEE---IAKKD-SE--GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-------- 161 (314)
T ss_dssp EETT-SCEEE---CCSBC-TT--SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--------
T ss_pred EeCC-CCEEE---EEecc-CC--CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--------
Confidence 9987 44211 1 100 00 11224688999999998887766552 1344544421
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEc----cCCCEEEEE-ecCCeEEEEecC-CCeeEE--eeecccCCC-CCe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMN----RNSQHLAVG-SDQGYVYLLDTE-GPTVLY--QKHIASDIS-SGI 394 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s----~~g~~lasG-s~dG~V~vwD~~-~~~~l~--~~~~~~~~~-~~V 394 (826)
+.. ............++|+ ++++.+.++ ..++.|.+||+. .+.... .......+. ..+
T Consensus 162 --------g~~-----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T 1pjx_A 162 --------GQM-----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp --------SCE-----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred --------CCE-----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence 111 1111122346889999 999665554 567899999986 454321 111111222 456
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
..+++.+ ++.++++...++.|.+||..+|+.+..+.
T Consensus 229 ~~i~~d~------~G~l~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 229 DGMDFDE------DNNLLVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EEEEEBT------TCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred CceEECC------CCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 7788887 57766666678899999998888766653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-06 Score=98.72 Aligned_cols=191 Identities=11% Similarity=0.022 Sum_probs=115.2
Q ss_pred eeCCCeEEEec-CC---cEEEeccC--CCceeec------ccccCCccee--eCCCCCEEE-----EEECCCcEEEEeCC
Q 003360 201 ITGNSFILSSA-DE---DYSLLAKS--VPPLLDF------ETKLKDGSQS--HSKVKNLFI-----TGHSDGAINFWDVS 261 (826)
Q Consensus 201 s~~~~~l~~~~-d~---~i~~w~~~--~~~~~~~------~~~h~g~V~~--~s~~~~~l~-----Tgs~DGtVriWD~s 261 (826)
+++|..++... ++ ...+|... .+....+ ..+|...+.+ |+|||++|+ .|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47788776644 32 35556321 2111111 1134434555 999999998 45556789999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-------------EEEEEeCCCCCccccceEEEee
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-------------VRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-------------V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
+... +... .........++|+||++.|+.++.|.. |++|++.++....
T Consensus 156 tg~~-----~~~~-----~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--------- 216 (695)
T 2bkl_A 156 SGEW-----SKVD-----VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD--------- 216 (695)
T ss_dssp TCCB-----CSSC-----CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC---------
T ss_pred CCCC-----cCCc-----ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc---------
Confidence 5542 1000 011112267899999999999998876 9999987553210
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC----eEEEEecCCCeeEEeeecccCCCCCeeEEEEeeccc
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG----YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG----~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
... .....+...+.++.|||+|++|++++.++ .|++||..++...... .+...+....+ +
T Consensus 217 -----~lv---~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~----~~~~~~~~~~~-~--- 280 (695)
T 2bkl_A 217 -----TVV---HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV----KGVGAKYEVHA-W--- 280 (695)
T ss_dssp -----EEE---ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE----ECSSCCEEEEE-E---
T ss_pred -----eEE---EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee----cCCCceEEEEe-c---
Confidence 100 01111234688999999999999888776 6778876555433111 22334444445 3
Q ss_pred CCCCCcEEEEEEC----CCcEEEEECCCCc
Q 003360 405 QGFEKNFLVIATK----DSSVLVLDSDNGN 430 (826)
Q Consensus 405 ~~~d~~~l~sgs~----Dg~V~iwd~~tg~ 430 (826)
++. ++..+. ++.|.+||+.++.
T Consensus 281 ---~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 281 ---KDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ---TTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred ---CCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 356 555554 5789999998775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-07 Score=98.08 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=112.3
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeee-eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLI-LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i-~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
+++.+.++++|+.|+ +++|++........ .....+....+ .+.. |+.|+| ++.+|+++ .++.|++||+..-..
T Consensus 45 is~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 45 ISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE 118 (388)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred EcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence 888899999999985 55698621110000 00000000111 2335 999999 89999999 889999999984322
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
. -....+..+|.++.+.+.. +|+++.||.|.+||+..+.... +...|+++
T Consensus 119 ~---------------------~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v 168 (388)
T 1xip_A 119 F---------------------RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSF 168 (388)
T ss_dssp E---------------------EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-------EEESEEEE
T ss_pred c---------------------CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-------ccCCceEE
Confidence 1 1112334567777776543 8999999999999999887652 23479999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECCCCce--EEeeec----c--CCCCCcceEEEEec
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM--LSTNLI----H--PKKPSRALFMQILN 452 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~--i~~~~~----~--~~~~~~~lsi~~l~ 452 (826)
+|+|. | +++|..||++++|+..++.+ ..++.. + ......+.++..+.
T Consensus 169 ~WSpk------G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 169 DVTNS------Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp EECSS------E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred EEcCC------c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 99993 5 78899999999999987665 444421 1 11235566666664
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-05 Score=84.52 Aligned_cols=200 Identities=9% Similarity=0.114 Sum_probs=124.5
Q ss_pred cCCCEEEEEEeeC-CCeEEEecCCcEEEeccCCCceeec-ccc---c-CCccee--eCCCCCEEEEEECC----------
Q 003360 191 LDSSITAMKLITG-NSFILSSADEDYSLLAKSVPPLLDF-ETK---L-KDGSQS--HSKVKNLFITGHSD---------- 252 (826)
Q Consensus 191 h~~~Vt~~~fs~~-~~~l~~~~d~~i~~w~~~~~~~~~~-~~~---h-~g~V~~--~s~~~~~l~Tgs~D---------- 252 (826)
+...+..+++.++ +...++.....+..|+.. .....+ ... + ...+.+ ++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 4456889999999 665555544466677655 333322 111 1 122444 88999988887765
Q ss_pred -----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe----CCCCEEEEE-eCCCcEEEEEeCC-CCCcccc
Q 003360 253 -----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD----GTSRVLVSG-DQSGMVRIFKLKY-EPHAIEN 321 (826)
Q Consensus 253 -----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs----p~~~~Lasg-s~dg~V~iwd~~~-~~~~~~~ 321 (826)
+.|..||..+.. .. +. .+......++|+ |+++.|.++ ..++.|.+|++.. +..
T Consensus 148 ~~~~~~~l~~~~~~g~~-~~---~~--------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~---- 211 (314)
T 1pjx_A 148 MQEKFGSIYCFTTDGQM-IQ---VD--------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI---- 211 (314)
T ss_dssp TSSSCEEEEEECTTSCE-EE---EE--------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----
T ss_pred ccCCCCeEEEECCCCCE-EE---ec--------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----
Confidence 566677765322 11 10 111356789999 999765555 5678999999762 110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ... .....+. ..+..++++++|.++++...++.|.+||..+++.+.... .+...+.+++|+
T Consensus 212 --~~~-------~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~ 276 (314)
T 1pjx_A 212 --ENK-------KVW---GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFK 276 (314)
T ss_dssp --EEE-------EEE---EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEEC
T ss_pred --ccc-------eEE---EECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEEC
Confidence 000 000 0111111 457889999999888877788999999998666553333 234578899997
Q ss_pred ecccCCCCCcEEEEEE-CCCcEEEEECCC
Q 003360 401 TCSLQGFEKNFLVIAT-KDSSVLVLDSDN 428 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs-~Dg~V~iwd~~t 428 (826)
+ ++..|++++ .++.|..|+...
T Consensus 277 ~------dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 277 P------QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp T------TSSEEEEEETTTTEEEEEECSS
T ss_pred C------CCCEEEEEeCCCCeEEEEeCCC
Confidence 7 578676665 457899999864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-05 Score=83.19 Aligned_cols=215 Identities=9% Similarity=0.035 Sum_probs=129.1
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCcee
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL 226 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~ 226 (826)
.+++-...+.|+.||...- .... -.+...+.++++.+++++ +.+.+..+.+|+.....+.
T Consensus 27 l~~~d~~~~~i~~~d~~~~----------------~~~~---~~~~~~~~~i~~~~dG~l-~v~~~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTK----------------QVQR---VTMDAPVSSVALRQSGGY-VATIGTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEETTTTEEEEEETTTC----------------CEEE---EECSSCEEEEEEBTTSSE-EEEETTEEEEEETTTTEEE
T ss_pred EEEEECCCCEEEEEECCCC----------------cEEE---EeCCCceEEEEECCCCCE-EEEECCeEEEEECCCCcEE
Confidence 3444556788888887651 0011 122357899999999994 4445556777765443333
Q ss_pred ecccc----cCCccee--eCCCCCEEEEEECC---------CcEEEEeC--CCCceeeeeecccccccccccCCCCeEEE
Q 003360 227 DFETK----LKDGSQS--HSKVKNLFITGHSD---------GAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 227 ~~~~~----h~g~V~~--~s~~~~~l~Tgs~D---------GtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
.+... ....+.. ++++|+++++...+ ...+||.+ .+... . +. .+....+.+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~~--------~~~~~pngi 154 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-K---YF--------DQVDISNGL 154 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-E---EE--------EEESBEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-E---Ee--------eccccccce
Confidence 32111 1122333 89999987765432 33455555 33221 1 10 111356789
Q ss_pred EEeCCCCEEEE-EeCCCcEEEEEeC--CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLVS-GDQSGMVRIFKLK--YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~Las-gs~dg~V~iwd~~--~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|+++.|++ .+.++.|.+|++. .+.... .... .......+.+..++++++|.+.++...
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-------------~~~~---~~~~~~~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-------------RRSV---YKLEKEEQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-------------EEEE---EECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-------------cEEE---EECCCCCCCCCeeEECCCCCEEEEEcC
Confidence 99999987654 5557889999984 211100 0000 111112345788999999987777778
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~D 418 (826)
++.|.+||..+++++..... ....+++++|. + |+..|++.+..
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~------d~~~L~vt~~~ 262 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGK------NYSEMYVTCAR 262 (297)
T ss_dssp TTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESG------GGCEEEEEEBC
T ss_pred CCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCC------CCCEEEEEcCC
Confidence 88999999988888755543 33578999998 5 46777776653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00011 Score=76.54 Aligned_cols=201 Identities=6% Similarity=0.033 Sum_probs=128.7
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+...+..+++.+++...++.. ++.|..|+.. .....+..+ ....+.+ +.++++++++...++.|..||..+...
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 137 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY 137 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence 3446788899999998777665 6778888655 333333121 2233444 788899988888789999999873331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
. ..+. .....+..+++.+++++.++...++.|..|+.. +.. .. ......
T Consensus 138 -~-~~~~--------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~------~~--------------~~~~~~ 186 (300)
T 2qc5_A 138 -E-YDLP--------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL------EE--------------YPLPTN 186 (300)
T ss_dssp -E-EECS--------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE------EE--------------EECSST
T ss_pred -E-ccCC--------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE------EE--------------eeCCCC
Confidence 1 1111 123578999999999977666667888888763 211 00 111111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...+.+++++++|.+.++....+.|.+||. ++..... .. ......+.++++.+ ++.+.++...++.|..||
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~-~~~~~~~~~i~~d~------~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DI-PTPNARPHAITAGK------NSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-EC-SSTTCCEEEEEECS------TTCEEEEETTTTEEEEEC
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-EC-CCCCCCceEEEECC------CCCEEEeccCCCeEEEEC
Confidence 235889999999986666666788999998 5544421 11 22345678888887 466444444568999999
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
. +|+..
T Consensus 258 ~-~g~~~ 263 (300)
T 2qc5_A 258 N-DNTIQ 263 (300)
T ss_dssp T-TSCEE
T ss_pred C-CCcEE
Confidence 8 46543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.4e-05 Score=77.53 Aligned_cols=204 Identities=6% Similarity=0.031 Sum_probs=133.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
++.....+.++.+.+++...++.. ++.|..|+.. ..+..+..+ ....+.+ +.++++++++...++.|..||..+.
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~ 93 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGG 93 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCC
Confidence 345566788999999998777765 7888888765 333333122 1233444 7888998888877899999998733
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. .. +.+. .....+..+++.+++.++++...++.|..|+.. +.. .. ....
T Consensus 94 ~-~~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~------~~--------------~~~~ 142 (300)
T 2qc5_A 94 F-TE-YPLP--------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI------YE--------------YDLP 142 (300)
T ss_dssp E-EE-EECS--------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE------EE--------------EECS
T ss_pred e-EE-ecCC--------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE------EE--------------ccCC
Confidence 2 11 1111 123578999999999988877778888888765 211 00 1111
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.....+.++++.++|.+.++...++.|.+||. +++... ... ......+..+.+.+ ++.+.++....+.|.+
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~------~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGN------DGALWFVEIMGNKIGR 213 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT------TSSEEEEETTTTEEEE
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECC------CCCEEEEccCCCEEEE
Confidence 12345889999999986666666889999998 555442 221 23345677888877 4655444445678999
Q ss_pred EECCCCceEE
Q 003360 424 LDSDNGNMLS 433 (826)
Q Consensus 424 wd~~tg~~i~ 433 (826)
|+. +|+...
T Consensus 214 ~~~-~g~~~~ 222 (300)
T 2qc5_A 214 ITT-TGEISE 222 (300)
T ss_dssp ECT-TCCEEE
T ss_pred EcC-CCcEEE
Confidence 998 566543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-05 Score=94.50 Aligned_cols=202 Identities=9% Similarity=0.041 Sum_probs=123.0
Q ss_pred CCEEEEEEeeCCCeEEEec--C----CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCc----------
Q 003360 193 SSITAMKLITGNSFILSSA--D----EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA---------- 254 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d----~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt---------- 254 (826)
..+...+|+|||+.++.+. + ..|++|+......... ..+...+.. |+|+ +.|+.++.|+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 3678899999999998865 2 2588887665544432 111111123 9999 98888887765
Q ss_pred ----EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEeCCCCCccccce
Q 003360 255 ----INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 255 ----VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~iwd~~~~~~~~~~~~ 323 (826)
|++|++.+... .+++.. ..+...+..+.|+|++++|+..+.++ .|.+||+.++..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------ 306 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFAT--------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------ 306 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------
T ss_pred CCCEEEEEECCCCchhCEEEecc--------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------
Confidence 88999843321 111111 12223588999999999988877554 799999874310
Q ss_pred EEEeecCCCC-eEEEEEEEEeeccCCeEEEEEccCCCEEEEEec----CCeEEEEecCCCe-eEEeeecccCCCCCeeEE
Q 003360 324 LSFTGSKKGN-SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD----QGYVYLLDTEGPT-VLYQKHIASDISSGIVSL 397 (826)
Q Consensus 324 ~~i~~s~~~~-~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~----dG~V~vwD~~~~~-~l~~~~~~~~~~~~V~sl 397 (826)
. . .........+... ++|+|..|++.+. ++.|.+||+.++. ... .+...+...+..+
T Consensus 307 ---------~~~-----~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 307 ---------GPV-----TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPESKDNLESV 369 (741)
T ss_dssp ---------CCC-----EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCCSSEEEEE
T ss_pred ---------ccc-----EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCCCCeEEEE
Confidence 0 0 1112222333443 3488888888776 3559999998752 221 1112334445566
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEe
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~ 434 (826)
.|.. +.++++...|+..+||... +|+.+..
T Consensus 370 ~~~~-------~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 370 GIAG-------NRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EEEB-------TEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred EEEC-------CEEEEEEEECCEEEEEEEeCCCCceee
Confidence 6653 6778888889876666443 3555544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-05 Score=78.42 Aligned_cols=208 Identities=9% Similarity=-0.017 Sum_probs=127.1
Q ss_pred CCEEEEEEeeCCCeE-EEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 193 SSITAMKLITGNSFI-LSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
.-.-...|+++...+ ++.. .+.|..|+........ +.+.+.+.+ ++++++++++. ++.|.+||........+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEE
Confidence 344567788865544 4444 7788888765444332 233455656 89999966653 56899999965554332
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d---------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
..... ......++.++++|+++++++.... ..-.||.+... +...
T Consensus 89 ~~~~~------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------------g~~~---- 142 (297)
T 3g4e_A 89 ATVDN------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------------HHVK---- 142 (297)
T ss_dssp EECCT------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------------SCEE----
T ss_pred EecCC------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------------CCEE----
Confidence 22210 0112468899999999977654332 34567777522 1111
Q ss_pred EEEeeccCCeEEEEEccCCCEEE-EEecCCeEEEEec--CCCeeEEe--eecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 340 VKVMKINGSIISLNMNRNSQHLA-VGSDQGYVYLLDT--EGPTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~la-sGs~dG~V~vwD~--~~~~~l~~--~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.....-.....++|+|+++.|. +.+.++.|.+||+ .++.+... +.........+..+++.+ ++.+.++
T Consensus 143 -~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~------~G~lwva 215 (297)
T 3g4e_A 143 -KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA------EGKLWVA 215 (297)
T ss_dssp -EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT------TSCEEEE
T ss_pred -EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC------CCCEEEE
Confidence 1111123467899999998664 5556789999997 45543211 111112234567788877 5765555
Q ss_pred EECCCcEEEEECCCCceEEeeec
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
....+.|..||..+|+++..+..
T Consensus 216 ~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 216 CYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EETTTEEEEECTTTCCEEEEEEC
T ss_pred EcCCCEEEEEcCCCceEEEEEEC
Confidence 56677899999999999887643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-05 Score=90.78 Aligned_cols=188 Identities=12% Similarity=0.050 Sum_probs=111.7
Q ss_pred eeCCCeEEEec-CC---cEEEeccC-----CCceeec------ccccCCccee--eCCCCCEEEEEECC-C----cEEEE
Q 003360 201 ITGNSFILSSA-DE---DYSLLAKS-----VPPLLDF------ETKLKDGSQS--HSKVKNLFITGHSD-G----AINFW 258 (826)
Q Consensus 201 s~~~~~l~~~~-d~---~i~~w~~~-----~~~~~~~------~~~h~g~V~~--~s~~~~~l~Tgs~D-G----tVriW 258 (826)
+|+|++++... ++ ...+|... .+....+ ..+|...+.+ |+|||++|+.+..+ | .|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48888877654 32 35666322 2121211 1123223444 99999999887654 3 59999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc--------------EEEEEeCCCCCccccceE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM--------------VRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~--------------V~iwd~~~~~~~~~~~~~ 324 (826)
|+.+..... .. .+...+..++|+|| +.|+.++.++. |.+|++.++....
T Consensus 195 dl~tg~~~~---~~--------~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----- 257 (741)
T 1yr2_A 195 GVADGKPLA---DE--------LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD----- 257 (741)
T ss_dssp ETTTCCEEE---EE--------EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-----
T ss_pred ECCCCCCCC---cc--------CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-----
Confidence 996555311 10 11112357899999 99988887664 7778876432210
Q ss_pred EEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEecCC-----eEEEEecCCC--eeEEeeecccCCCCCee
Q 003360 325 SFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSDQG-----YVYLLDTEGP--TVLYQKHIASDISSGIV 395 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~dG-----~V~vwD~~~~--~~l~~~~~~~~~~~~V~ 395 (826)
. +.+.. +...+..+.|||||++|++.+.++ .|++||+.++ .+..... .+...+.
T Consensus 258 ---------~-----lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~ 320 (741)
T 1yr2_A 258 ---------Q-----PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQW 320 (741)
T ss_dssp ---------E-----EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCE
T ss_pred ---------E-----EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceE
Confidence 1 11111 122488999999999999888654 8999999877 3121121 2223333
Q ss_pred EEEEeecccCCCCCcEEEEEECC----CcEEEEECCCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKD----SSVLVLDSDNG 429 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~D----g~V~iwd~~tg 429 (826)
...+ + ++..|+..+.+ +.|.+||..++
T Consensus 321 ~~~~-~------dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 321 DFVD-G------VGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEE-E------ETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEe-c------cCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 3333 4 47778877764 45999999875
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00024 Score=77.78 Aligned_cols=212 Identities=7% Similarity=-0.088 Sum_probs=125.2
Q ss_pred EEEEeeCCCeEEEec-----------CCcEEEeccCCCceee-cccc---c--CCcce-e--eCCCCCEEEEEEC--CCc
Q 003360 197 AMKLITGNSFILSSA-----------DEDYSLLAKSVPPLLD-FETK---L--KDGSQ-S--HSKVKNLFITGHS--DGA 254 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~-----------d~~i~~w~~~~~~~~~-~~~~---h--~g~V~-~--~s~~~~~l~Tgs~--DGt 254 (826)
.+.++||++.++.+. ++.|.+|+........ ...+ . .+.-+ . ++|+|++|+++.. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999999874 4568888664322221 1111 0 01111 2 9999999998874 578
Q ss_pred EEEEeCCCCceeeeee-cccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccc----------cc
Q 003360 255 INFWDVSCPLFLLILS-LKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIE----------NS 322 (826)
Q Consensus 255 VriWD~s~~~~~~i~~-l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~----------~~ 322 (826)
|.++| ..... +.. +. .. .++.+.|++ +.+++.+.||.+.+|+. .+..... ..
T Consensus 150 v~viD-~t~~~--~~~~i~--------~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 150 VGLVV-QGGSS--DDQLLS--------SP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred EEEEE-CCCCE--EeEEcC--------CC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 99999 76653 222 22 10 123444544 44555667777777777 4322100 00
Q ss_pred e-EEEeecCCC----------CeEEEEE-------EEEe-----------eccCCeEEEEEccCCCEEEEEec-------
Q 003360 323 F-LSFTGSKKG----------NSHIIHS-------VKVM-----------KINGSIISLNMNRNSQHLAVGSD------- 366 (826)
Q Consensus 323 ~-~~i~~s~~~----------~~~~~~~-------~~~~-----------~~~~~V~~l~~s~~g~~lasGs~------- 366 (826)
+ ....+.+++ ....+.- +... ........+.+++++.++.++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 0 000001111 0000000 0000 01222445788999988887654
Q ss_pred ---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE-CCCcEEEEECCCCceEEe
Q 003360 367 ---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT-KDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 367 ---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs-~Dg~V~iwd~~tg~~i~~ 434 (826)
++.|.++|+.+.+++.+... .....++.|++ |+. .++++. .++.|.+||..+++.+.+
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~------Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQ------DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECC------CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999998855542 22578899999 687 777777 489999999999998877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=7.2e-05 Score=81.57 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=128.4
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCC-Cceeeee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSC-PLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~ 269 (826)
-..+.|+|||++++.+. ++.|.+++......... .+..+ ... +....+.+++.+.||++-+.+... .....
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t-I~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-- 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-- 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE-EECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE--
Confidence 34578999999988864 46788887765443322 22122 112 333456777888999999999832 33211
Q ss_pred ecccccccccccCCCCeE-EEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 270 SLKQQSEKDFSLSGIPLT-ALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~-~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
... ..+.....++. ...|. ++++++. .+.+|+|.++|+..+.......+. + +.... +......+
T Consensus 215 ~~~----~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~-~-~~~~~-------~~~g~~p~ 280 (386)
T 3sjl_D 215 THT----EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE-A-LTEAE-------RADGWRPG 280 (386)
T ss_dssp EEC----CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE-S-SCHHH-------HHTTEEEC
T ss_pred eec----ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee-c-ccccc-------ccccccCC
Confidence 000 01111112222 23665 5665555 556899999998744321000000 0 00000 00001123
Q ss_pred CeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE
Q 003360 348 SIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT 416 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs 416 (826)
....++++++++++.+... ...|.++|+.+++++.+.... ..+.++.|++ |+. .|++..
T Consensus 281 g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~------D~~~~ly~tn 350 (386)
T 3sjl_D 281 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQ------DEKPLLYALS 350 (386)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECS------SSSCEEEEEE
T ss_pred CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECC------CCCeEEEEEc
Confidence 3445777999998888753 257999999999999665542 2677899998 565 677755
Q ss_pred -CCCcEEEEECCCCceEEeee
Q 003360 417 -KDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 417 -~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.++.|.++|..+++.+.++.
T Consensus 351 ~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 351 TGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp TTTTEEEEEETTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEec
Confidence 48999999999999998864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00011 Score=80.20 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=100.9
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------C
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------Q 303 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~ 303 (826)
..|+++.+.+... +++|.+.|...... +..+. ....+ . ++++|++++|++++ .
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~~I~--------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV--IGMID--------GGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEE--EEEEE--------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeE--EEEEE--------CCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 5678887666654 68999999954442 22232 11233 4 99999999888876 3
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l 381 (826)
++.|.+||..+.... ..+...... . .........++|+|||+++.+++. ++.|.|+|+.+++++
T Consensus 108 ~~~VsviD~~t~~v~-----~~I~v~~g~-r--------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPT-----ADIELPDAP-R--------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEEECTTTCCEE-----EEEEETTCC-C--------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEE-----EEEECCCcc-c--------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 678999999854321 001000000 0 000113556899999999988874 689999999999998
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
.+..... . ...+ |. ....+++.+.||++.++++.+ ++.+
T Consensus 174 ~tI~v~g----~--~~~~-P~-----g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 174 RMLDVPD----C--YHIF-PT-----APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp EEEECCS----E--EEEE-EE-----ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred EEEECCC----c--ceee-cC-----CCceeEEECCCCCEEEEECCCCCeEE
Confidence 6664321 1 1223 32 256677889999999999986 6653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0003 Score=75.22 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=124.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCcee
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL 226 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~ 226 (826)
.+++....+.|+.||...- ..... . +...+.++.+.++++.+++..++ +.+|+.....+.
T Consensus 63 l~~~d~~~~~i~~~d~~~~----------------~~~~~--~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~ 122 (326)
T 2ghs_A 63 AWWFNILERELHELHLASG----------------RKTVH--A-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLT 122 (326)
T ss_dssp EEEEEGGGTEEEEEETTTT----------------EEEEE--E-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEE
T ss_pred EEEEECCCCEEEEEECCCC----------------cEEEE--E-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEE
Confidence 3445556788988886541 00111 1 23578999999999877665444 666764433333
Q ss_pred eccc---cc-CCccee--eCCCCCEEEEEECC------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 227 DFET---KL-KDGSQS--HSKVKNLFITGHSD------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 227 ~~~~---~h-~g~V~~--~s~~~~~l~Tgs~D------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
.+.. .+ ...+.+ ++++|+++++...+ +.|..+| . ..... +. .+......++|+|+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~~~~---~~--------~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-GKVTK---LF--------ADISIPNSICFSPD 189 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-TEEEE---EE--------EEESSEEEEEECTT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-CcEEE---ee--------CCCcccCCeEEcCC
Confidence 2211 11 123444 89999987765432 3444455 3 22211 11 11135678999999
Q ss_pred CCEEEEE-eCCCcEEEEEeC--CC-CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 295 SRVLVSG-DQSGMVRIFKLK--YE-PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 295 ~~~Lasg-s~dg~V~iwd~~--~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
++.|+++ +.++.|.+|++. ++ .... .... .......+.+..++++++|.+.++...++.|
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-------------~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGK-------------AEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSC-------------CEEE---EECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccC-------------ceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence 9877655 456889999985 32 1110 0000 0111112346789999999877776677899
Q ss_pred EEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECCC
Q 003360 371 YLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 371 ~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~Dg 419 (826)
.+||. +++.+.... .....+++++|. + ++..|++++..+
T Consensus 254 ~~~d~-~g~~~~~i~---~~~~~~~~~af~g~------d~~~L~vt~~~~ 293 (326)
T 2ghs_A 254 DRYDT-DGNHIARYE---VPGKQTTCPAFIGP------DASRLLVTSARE 293 (326)
T ss_dssp EEECT-TCCEEEEEE---CSCSBEEEEEEEST------TSCEEEEEEBCT
T ss_pred EEECC-CCCEEEEEE---CCCCCcEEEEEecC------CCCEEEEEecCC
Confidence 99998 566554333 233468999998 5 567777666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00067 Score=74.14 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=94.3
Q ss_pred CCCCEEEEEEC--CC---cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------CCC
Q 003360 241 KVKNLFITGHS--DG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------QSG 305 (826)
Q Consensus 241 ~~~~~l~Tgs~--DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~dg 305 (826)
++++++.+... .. +|.+||...... +..+. ....+ .++|+||++.|+++. .++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~--~~~i~--------~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSI--LGHVN--------GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeE--EEEec--------CCCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 45554444432 22 889999944432 22232 11123 899999999999986 367
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~ 383 (826)
.|.+||..+.... ..+....... . ........++|+|+|++|++++. ++.|.++| .+++++..
T Consensus 98 ~v~viD~~t~~~~-----~~i~~~~~~~------~---~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 98 YVEVFDPVTFLPI-----ADIELPDAPR------F---DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred eEEEEECCCCcEE-----EEEECCCccc------c---ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 8999998743221 0000000000 0 00122457899999999999874 57899999 99988744
Q ss_pred -eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 384 -KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 384 -~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.... . ++.+.+. ....+++.+.||.+.+||. +++.+..
T Consensus 163 ~i~~~----~---~~~~~~~-----~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 163 LLSSP----T---CYHIHPG-----APSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred EcCCC----c---eEEEEeC-----CCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3321 1 2334442 2345667778999999999 8887743
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00014 Score=76.88 Aligned_cols=211 Identities=8% Similarity=-0.005 Sum_probs=125.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++....+.|+.|+... . ...+..+...+..+++.++++.+++.. ++.|..|+... ...
T Consensus 60 ~~~d~~~~~i~~~~~~g-----------------~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~~~ 119 (305)
T 3dr2_A 60 VWSDLVGRRVLGWREDG-----------------T--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-QAH 119 (305)
T ss_dssp EEEETTTTEEEEEETTS-----------------C--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE
T ss_pred EEEECCCCEEEEEeCCC-----------------C--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-CEE
Confidence 34455667888876532 0 111233455688999999999666554 56787886542 232
Q ss_pred eccccc----CCccee--eCCCCCEEEE----EEC-------------CCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 227 DFETKL----KDGSQS--HSKVKNLFIT----GHS-------------DGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 227 ~~~~~h----~g~V~~--~s~~~~~l~T----gs~-------------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
.+.... ...+.. ++++|++++| |.. .+.|..||........+. ..
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------------~~ 187 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------------DL 187 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------------EE
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------------cC
Confidence 221111 112333 8899999987 432 245777777333321111 11
Q ss_pred CCeEEEEEeCCCCEEEEEeCC------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 284 IPLTALYYDGTSRVLVSGDQS------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~d------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
.....++|+|+++.|+++... +.|.+|++..+. +. ... .......+....++++++
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~---------~~~---~~~~~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH---------DRR---HFASVPDGLPDGFCVDRG 249 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE---------EEE---EEECCSSSCCCSEEECTT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc---------CCe---EEEECCCCCCCeEEECCC
Confidence 256789999999988887665 689999886321 00 000 111112334567899999
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
|. |.++..+| |.+||. .++.+...... ..+.+++|.+ ++..|++++.++..
T Consensus 250 G~-lwv~~~~g-v~~~~~-~g~~~~~~~~~----~~~~~~~f~~------d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 250 GW-LWSSSGTG-VCVFDS-DGQLLGHIPTP----GTASNCTFDQ------AQQRLFITGGPCLW 300 (305)
T ss_dssp SC-EEECCSSE-EEEECT-TSCEEEEEECS----SCCCEEEECT------TSCEEEEEETTEEE
T ss_pred CC-EEEecCCc-EEEECC-CCCEEEEEECC----CceeEEEEeC------CCCEEEEEcCCeEE
Confidence 98 55555555 899998 45555434321 2478899986 58889988876533
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0004 Score=76.96 Aligned_cols=208 Identities=14% Similarity=0.102 Sum_probs=126.2
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCC--cEEEEeCCCCce-eeee
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDG--AINFWDVSCPLF-LLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DG--tVriWD~s~~~~-~~i~ 269 (826)
....+++.+++..+++.. ++.|+.|+.....+..+......+..+++++++.|+++..++ .|.+||...... ..+-
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 567889999998777666 688999976654444331111112233899999888888766 788888743321 1110
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC--
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-- 347 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-- 347 (826)
.+. ......+.+++++|++..|+++..++.|..||...... ..+.... .....+
T Consensus 212 ~~~-------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~------~~~~~~~-----------~~g~~~~~ 267 (409)
T 3hrp_A 212 QLG-------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV------TLIKQLE-----------LSGSLGTN 267 (409)
T ss_dssp ECC-------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE------EEEEECC-----------CCSCCCCS
T ss_pred ecc-------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE------EEEeccc-----------ccCCCCCC
Confidence 011 01235678899999666666677888999999874321 0000000 000111
Q ss_pred CeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeec-ccC---------CCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 348 SIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHI-ASD---------ISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 348 ~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~-~~~---------~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
|...++|+|+ +.++++-..++.|+.||.......+.-.. ..+ .-.....++|++ ++.++++-+
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~------dG~lyvad~ 341 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE------DGNFYIVDG 341 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT------TCCEEEEET
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC------CCCEEEEeC
Confidence 1238999995 55555666788999999865422211110 000 013467888888 577666666
Q ss_pred -CCCcEEEEECCCCce
Q 003360 417 -KDSSVLVLDSDNGNM 431 (826)
Q Consensus 417 -~Dg~V~iwd~~tg~~ 431 (826)
.++.|+.|+..+|..
T Consensus 342 ~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYV 357 (409)
T ss_dssp TTTCEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCEE
Confidence 788999999777764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00022 Score=79.07 Aligned_cols=247 Identities=11% Similarity=0.039 Sum_probs=137.4
Q ss_pred ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-----------CCcEEEeccCCC
Q 003360 155 GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-----------DEDYSLLAKSVP 223 (826)
Q Consensus 155 G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----------d~~i~~w~~~~~ 223 (826)
+.+.++|..+.+ ..-.++.-..+ .+.++|+++.++.+. ++.|.+++....
T Consensus 99 ~~VsVID~~t~~-----------------vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 99 TQQFVIDGSTGR-----------------ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp EEEEEEETTTTE-----------------EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CeEEEEECCCCE-----------------EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 689999987721 22223333334 789999999988864 456888876543
Q ss_pred ceee-cccc-c----CCc-cee--eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe
Q 003360 224 PLLD-FETK-L----KDG-SQS--HSKVKNLFITGHS--DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ~~~~-~~~~-h----~g~-V~~--~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
.... +..+ . .+. -.. ++|+|+++.++.. +++|.+.|+..... +..+.......+... ..-..+.++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g~~~~~p~-g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPDCYHIFPA-SPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEEEEEE-ETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCCceeeccC-CCcEEEEEc
Confidence 3322 2111 0 011 112 9999999888874 58999999955442 222321000000000 011234566
Q ss_pred CCCCEEEEEeCCCcEE-----EEEeCCCCCcc-------ccceEEEeecCCCCeEEEEE----EEEe-------------
Q 003360 293 GTSRVLVSGDQSGMVR-----IFKLKYEPHAI-------ENSFLSFTGSKKGNSHIIHS----VKVM------------- 343 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~-----iwd~~~~~~~~-------~~~~~~i~~s~~~~~~~~~~----~~~~------------- 343 (826)
++++++++...++.+. +|++....... ...+..... .+....+.. +...
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeeecccccccc
Confidence 6666665555555443 22222111000 000111110 110100000 0000
Q ss_pred -eccCCeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-E
Q 003360 344 -KINGSIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-F 411 (826)
Q Consensus 344 -~~~~~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~ 411 (826)
........+++++++.++.+... ++.|.|+|+.+.+++.+.... .....+.|++ |+. .
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~sp------Dg~~~ 384 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQ------DAEPL 384 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECC------SSSCE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEcc------CCCEE
Confidence 00111223689999988877653 357999999999999665432 2477899998 687 8
Q ss_pred EEEEE-CCCcEEEEECCCCceEEee
Q 003360 412 LVIAT-KDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs-~Dg~V~iwd~~tg~~i~~~ 435 (826)
+++.. .++.|.++|..+++.+.++
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88888 5899999999999999885
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0032 Score=68.27 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=106.3
Q ss_pred CCCeEEEec-CCcEEEeccCCCcee-ecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPLL-DFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKD 278 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~ 278 (826)
++..++.+. ++.+..++....... .. ...+.+.+ ....+..++.++.+|.|..+|. ++..+ ...... ...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~---W~~~~~-~~~ 175 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT--KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK---WTVNLD-MPS 175 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE--ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEE---EEEECC-C--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE--eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEE---EEEeCC-CCc
Confidence 445555555 888888876543322 22 11222222 1112457888899999999999 44442 222211 000
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
..... ....... +..++++..+|.|..+|..++... +..... +.+.. .+..+. .....++ . .
T Consensus 176 ~~~~~--~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~~~~~~~-~~~~~~-~~~~~p~----~--~ 238 (376)
T 3q7m_A 176 LSLRG--ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMI-----WQQRISQATGST-EIDRLS-DVDTTPV----V--V 238 (376)
T ss_dssp ---CC--CCCCEEE--TTEEEECCTTTEEEEEETTTCCEE-----EEEECCC-------------CCCCCCE----E--E
T ss_pred eeecC--CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEE-----EEEecccCCCCc-cccccc-ccCCCcE----E--E
Confidence 00000 0111122 456788888999999998755331 110000 00000 000000 0001111 1 2
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..+.+++.+|.|..+|..+++.++..... ....+.. ++..+++++.++.|..+|..+|+.+-..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--------~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--------DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--------ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--------ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 457888889999999999999988655421 2222222 2678899999999999999999987654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00086 Score=79.38 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=34.4
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
..++....+...+.++++|+.||.+++||.+++++++++....
T Consensus 476 ~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 3344555566778899999999999999999999998887543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0051 Score=67.68 Aligned_cols=200 Identities=10% Similarity=0.048 Sum_probs=114.7
Q ss_pred EEEEEEeeCCCeEEEec-C------CcEEEeccCCCceeecccccCC---cce-e--eCCCCCEEEEEE-----------
Q 003360 195 ITAMKLITGNSFILSSA-D------EDYSLLAKSVPPLLDFETKLKD---GSQ-S--HSKVKNLFITGH----------- 250 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d------~~i~~w~~~~~~~~~~~~~h~g---~V~-~--~s~~~~~l~Tgs----------- 250 (826)
-..+.+.|++ .++++. + +.+.+++..+..+... |...+ ++. . |+|+++.++|..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~-~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGK-WEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEE-CCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEE-EccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 3456778898 555544 4 5688887665444433 43221 111 1 699999988874
Q ss_pred --------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE--eCCCCEEEEEe------CCCcEEEEEeCC
Q 003360 251 --------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--DGTSRVLVSGD------QSGMVRIFKLKY 314 (826)
Q Consensus 251 --------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--sp~~~~Lasgs------~dg~V~iwd~~~ 314 (826)
.+.+|.+||+..... +..+.-. ..+.....|.| +|+++++.+++ .+++|.+|....
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~--~~tI~vg------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKR--IHSLTLG------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEE--EEEEESC------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred chhhhhhccCCEEEEEECCCCcE--eeEEecC------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 378999999965542 2233310 01123455656 99999888877 467898888763
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEee-----ccCCeEEEEEccCCCEEEEEec-CCeEEEEecCC---CeeEEeee
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----INGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEG---PTVLYQKH 385 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~---~~~l~~~~ 385 (826)
+.... ...+.......... +.... ....+..|.+|+||++|.++.. .+.|+++|+.. .+++....
T Consensus 290 g~~~~---~~vIdi~~~~v~~~---lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 290 GKWNA---EKVIEIPAEPLEGN---LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TEEEE---EEEEEECCEECCSS---CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred CceeE---EEEEeCCCcccccc---ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence 21110 00000000000000 00000 0245788999999999988775 68999999863 34443333
Q ss_pred cccC-----------CCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 386 IASD-----------ISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 386 ~~~~-----------~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+... .......+++++ |+.+|+++.
T Consensus 364 tGG~~~~~~~~~G~~~~ggPr~~~lSp------DGk~LyVaN 399 (462)
T 2ece_A 364 LGGIFHRADHPAGHKLTGAPQMLEISR------DGRRVYVTN 399 (462)
T ss_dssp CBTTTTCBCCTTSCCCCSCCCCEEECT------TSSEEEEEC
T ss_pred eCCeeccccccccccCCCCCCEEEEcC------CCCEEEEEc
Confidence 2100 011356688888 699999887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00057 Score=80.91 Aligned_cols=80 Identities=10% Similarity=0.204 Sum_probs=52.6
Q ss_pred EEEEEeCCCCEEEEEeCCC-------------------cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 287 TALYYDGTSRVLVSGDQSG-------------------MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg-------------------~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
..++++|++..++++..++ .|..+|..+++.. +. .+...+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-----W~--------------~~~~~~d~ 306 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-----WH--------------YQETPGDN 306 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-----EE--------------EESSTTCC
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-----EE--------------EecCCCcc
Confidence 4678999999999988775 3666666644321 10 111111
Q ss_pred -----cCCeEEEEEccCC---CEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 346 -----NGSIISLNMNRNS---QHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 346 -----~~~V~~l~~s~~g---~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
......+....+| ..|++++.+|.|+++|..+++++....
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1122233444577 679999999999999999999986654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00083 Score=74.37 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=114.4
Q ss_pred EEEeeCCCeEEEec-CC--cEEEeccCCCceeec----ccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 198 MKLITGNSFILSSA-DE--DYSLLAKSVPPLLDF----ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~--~i~~w~~~~~~~~~~----~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
++|+++++.++.+. ++ .+..|+......... .........+ ++| ++.+++ +..++.|+.||........
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~ 254 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTL 254 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEE
Confidence 88999999888876 44 566665443222111 0112233444 888 555555 6678999999995554322
Q ss_pred eeecccccccccccCCC--CeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC--CCCeEEEEEEEE
Q 003360 268 ILSLKQQSEKDFSLSGI--PLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK--KGNSHIIHSVKV 342 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~--~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~--~~~~~~~~~~~~ 342 (826)
+..... ..+.. +...++|+|+ +.++++-..++.|+.|+.... +..+.... .+... +...
T Consensus 255 ~~~~~~------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-------~~~~~g~~~~~g~~d---g~~~ 318 (409)
T 3hrp_A 255 IKQLEL------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-------CEWFCGSATQKTVQD---GLRE 318 (409)
T ss_dssp EEECCC------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECTTCCSCBC---EEGG
T ss_pred Eecccc------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-------EEEEEeCCCCCCcCC---Cccc
Confidence 211110 01111 1239999995 555555566788888876522 11111111 01000 0000
Q ss_pred eeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecc--cC---------CCCCeeEEEEeecccCCCCCc
Q 003360 343 MKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIA--SD---------ISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~--~~---------~~~~V~sl~f~~~~~~~~d~~ 410 (826)
...-.....|+++++|.++++-+ .++.|+.||+.++.+....... .+ .-.....+++.+ ++.
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~------~g~ 392 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG------EGG 392 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS------SSE
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC------CCC
Confidence 00012478999999999777777 7899999998777754222110 00 013466777777 455
Q ss_pred EEEEEECCCcEEEEEC
Q 003360 411 FLVIATKDSSVLVLDS 426 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~ 426 (826)
++++-..+++|+.+++
T Consensus 393 lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 393 YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEESTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 5555566667766654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-06 Score=95.46 Aligned_cols=185 Identities=13% Similarity=0.181 Sum_probs=98.6
Q ss_pred CCCeEEEec-CCcEEEeccCCCce-eecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~ 277 (826)
++..+++++ |+.+..|+...... ..+. . +.+.+ +..++.++++++.||.|+.||+ ++..+ .........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--E-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE--C-CCSCCCC-----CCEEECTTTCCEEEC-----CCS---EECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec--C-CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee---eeeeccCcc
Confidence 456677766 89999998654333 3331 1 44544 6677788888899999999999 55442 122211000
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
. ....++. ..+..+++|+.||.|+.||..+++... .. .... ...++|+
T Consensus 82 ~--~~~sp~~-----~~~~~v~~g~~dg~v~a~D~~tG~~~w---------------------~~-~~~~---~~~~~p~ 129 (369)
T 2hz6_A 82 L--VQASPCR-----SSDGILYMGKKQDIWYVIDLLTGEKQQ---------------------TL-SSAF---ADSLSPS 129 (369)
T ss_dssp H--HTTCSCC----------CCCCEEEEEEEEECCC--------------------------------------------
T ss_pred c--cccCceE-----ecCCEEEEEeCCCEEEEEECCCCcEEE---------------------Ee-cCCC---ccccccc
Confidence 0 0111111 134567888899999999998654311 00 0011 1344567
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC---CcEEEEEECCCcEEEEECCCCceEEe
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE---KNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d---~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+..|++|+.||.|+.||.+++++++..... . +....... + ...+++++.||.|+.||..+|+.+-.
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~---------~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTRELRWNATYF-D---------YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSSSCCCEEEEE-E---------ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCCEEEeEecc-c---------ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 888999999999999999999887554321 1 11111110 1 25678899999999999999998876
Q ss_pred ee
Q 003360 435 NL 436 (826)
Q Consensus 435 ~~ 436 (826)
+.
T Consensus 199 ~~ 200 (369)
T 2hz6_A 199 QN 200 (369)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0009 Score=71.48 Aligned_cols=203 Identities=10% Similarity=0.009 Sum_probs=117.6
Q ss_pred EEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 195 ITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 195 Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.....|++++.. +++.. ++.|..|+........+ .+...+.+ ++++++++++. .+ .|.+||........+..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 356678887554 44554 67788886554333322 23345666 78898877754 44 49999985444322211
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
... ......+..++++|+++++++...+ +...||.+..+. . .......
T Consensus 127 ~~~------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-----------------~-----~~~~~~~ 178 (326)
T 2ghs_A 127 LES------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-----------------V-----TKLFADI 178 (326)
T ss_dssp SST------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-----------------E-----EEEEEEE
T ss_pred CCC------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-----------------E-----EEeeCCC
Confidence 110 0112468899999999977655321 234555554111 0 0011112
Q ss_pred CCeEEEEEccCCCEEEEE-ecCCeEEEEecC--CC-eeE--EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 347 GSIISLNMNRNSQHLAVG-SDQGYVYLLDTE--GP-TVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~--~~-~~l--~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....++|+++|+.++++ +.++.|.+||+. ++ .+. ..+.........+..+.+.+ ++.+.++...++.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~------~G~lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------EGHIWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT------TSCEEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC------CCCEEEEEeCCCE
Confidence 346789999999876554 457899999986 55 321 00111112233456677766 4665555445688
Q ss_pred EEEEECCCCceEEeee
Q 003360 421 VLVLDSDNGNMLSTNL 436 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~ 436 (826)
|.+||. +|+.+..+.
T Consensus 253 v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEECT-TCCEEEEEE
T ss_pred EEEECC-CCCEEEEEE
Confidence 999998 577776653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00097 Score=79.11 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|+.||+.+++++++.... .++..-.+.. .+.++++|+.|+.|++||.+||+.+..+...
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~t------agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYV----TIFNGGTLST------AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEES----SSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEEEEECCCCCeEeEccCC----CCccCccceE------CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 378999999999999766532 2222223444 3789999999999999999999999886543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0025 Score=69.11 Aligned_cols=240 Identities=10% Similarity=0.075 Sum_probs=125.8
Q ss_pred CCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 240 SKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
..++..++.++.||.|..+|.. +..+ ...... . .....++ .. +..+++++.+|.|..+|..++...
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~--~--~~~~~p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVA---WQTKVA--G--EALSRPV----VS--DGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEE---EEEECS--S--CCCSCCE----EE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEE---EEEeCC--C--ceEcCCE----EE--CCEEEEEcCCCeEEEEECCCCcEE
Confidence 3345678888999999999994 5442 222211 0 0111121 11 457888999999999998755321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC-CCeeE-
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS-SGIVS- 396 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~-~~V~s- 396 (826)
+.... .... ...... ...... +..+++|+.+|.|..+|..+++.++......... ..+..
T Consensus 167 -----W~~~~--~~~~-----~~~~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 167 -----WTVNL--DMPS-----LSLRGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp -----EEEEC--CC----------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred -----EEEeC--CCCc-----eeecCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 10000 0000 000000 111122 3468889999999999999999987665321100 00000
Q ss_pred --EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCC
Q 003360 397 --LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSP 474 (826)
Q Consensus 397 --l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (826)
+...|. ..+..+++++.++.+..+|..+|+.+-.... . ....+...
T Consensus 229 ~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~---~~~~~~~~----------------------- 276 (376)
T 3q7m_A 229 SDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKREL--G---SVNDFIVD----------------------- 276 (376)
T ss_dssp -CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEECC--C---CEEEEEEE-----------------------
T ss_pred cccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeeccC--C---CCCCceEE-----------------------
Confidence 001110 0256788889999999999999998866421 1 11111111
Q ss_pred CCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccc
Q 003360 475 KENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 475 ~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
.+.+++.+.++.+..|+.. ..+.+.+........ ..+... .+..+.+...+|.+.++..-+.+.+.
T Consensus 277 ------~~~l~~~~~~g~l~~~d~~-----tG~~~w~~~~~~~~~-~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 277 ------GNRIYLVDQNDRVMALTID-----GGVTLWTQSDLLHRL-LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp ------TTEEEEEETTCCEEEEETT-----TCCEEEEECTTTTSC-CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ------CCEEEEEcCCCeEEEEECC-----CCcEEEeecccCCCc-ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 1234444455688888876 223333332110111 111111 13345555567888888877776665
Q ss_pred cc
Q 003360 555 ET 556 (826)
Q Consensus 555 ~~ 556 (826)
..
T Consensus 343 ~~ 344 (376)
T 3q7m_A 343 QQ 344 (376)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=79.14 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=117.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec----C--CcEEEeccCCCceeeccc-ccCCcceeeCCCCCEEEEEECCCc---------
Q 003360 191 LDSSITAMKLITGNSFILSSA----D--EDYSLLAKSVPPLLDFET-KLKDGSQSHSKVKNLFITGHSDGA--------- 254 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~----d--~~i~~w~~~~~~~~~~~~-~h~g~V~~~s~~~~~l~Tgs~DGt--------- 254 (826)
|...+..++||||++.++.+. + ..|++|+........... ..+..-.+|+ |++.|+.++.|..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 344678889999999988633 2 357788765544433211 1111112289 9999998888854
Q ss_pred ----EEEEeCCCCce--eeeeeccccccccccc-CCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEeCCCCCccccce
Q 003360 255 ----INFWDVSCPLF--LLILSLKQQSEKDFSL-SGIPLTALYYDGTSRVLVSGDQ----SGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 255 ----VriWD~s~~~~--~~i~~l~~~~~~~~~~-h~~~V~~l~fsp~~~~Lasgs~----dg~V~iwd~~~~~~~~~~~~ 323 (826)
|++|++..... .+++... . |...+..+.|+|++++|+.... +..|.+||+.....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------ 271 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAI--------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------ 271 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCS--------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC------
T ss_pred CCcEEEEEECCCCcccceEEEecC--------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC------
Confidence 99999843321 1222211 2 3345778999999998865433 24788999874321
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC---CeEEEEecCCCee--EEeeecccCCCCCeeEE
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ---GYVYLLDTEGPTV--LYQKHIASDISSGIVSL 397 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d---G~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl 397 (826)
.. ............. |+++|..|+.-+ .+ +.|.++|+.++.. ...+. .+...+.
T Consensus 272 ---------~~-----~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~-- 331 (693)
T 3iuj_A 272 ---------PL-----LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL-- 331 (693)
T ss_dssp ---------CC-----EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--
T ss_pred ---------ce-----EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--
Confidence 11 1122223334443 566666655444 33 6899999987654 11111 2233343
Q ss_pred EEeecccCCCCCcEEEEEEC-CC--cEEEEECCCCceEEe
Q 003360 398 QFETCSLQGFEKNFLVIATK-DS--SVLVLDSDNGNMLST 434 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~-Dg--~V~iwd~~tg~~i~~ 434 (826)
.|++. ++.|+.... ++ .|++|+.. |.....
T Consensus 332 ~~s~~------g~~lv~~~~~~g~~~l~~~d~~-g~~~~~ 364 (693)
T 3iuj_A 332 TVHSG------SGYLFAEYMVDATARVEQFDYE-GKRVRE 364 (693)
T ss_dssp EEEEE------TTEEEEEEEETTEEEEEEECTT-SCEEEE
T ss_pred EEEEE------CCEEEEEEEECCeeEEEEEECC-CCeeEE
Confidence 77773 666666554 44 68999988 444433
|
| >1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-06 Score=66.68 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=42.5
Q ss_pred chHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 774 PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 774 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
.......-+++.||||||+.|.+||++|++.|+.|...|++|.++|
T Consensus 17 ~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 17 VDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566778889999999999999999999999999999999999987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00051 Score=81.70 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=91.8
Q ss_pred eCCCCCEEEE-----EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-------
Q 003360 239 HSKVKNLFIT-----GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM------- 306 (826)
Q Consensus 239 ~s~~~~~l~T-----gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~------- 306 (826)
|+|+|++||- |+.+.+|++||+.++..... .+ +......++|+ |++.|+.++.+..
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~----------~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL----------KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE----------EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc----------CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 9999998884 33345799999955542111 11 11113567899 9999999888743
Q ss_pred ------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEec----CCeEEEEe
Q 003360 307 ------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSD----QGYVYLLD 374 (826)
Q Consensus 307 ------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~----dG~V~vwD 374 (826)
|.+|++.+..... .. +.... +...+.++.|+|||++|+.... +..|+++|
T Consensus 204 ~~~~~~v~~~~lgt~~~~~--------------~~----v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD--------------RL----VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC--------------EE----EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred cCCCcEEEEEECCCCcccc--------------eE----EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 8888877543210 10 11111 2334688999999998876543 24899999
Q ss_pred cCCCe-eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-C---CcEEEEECCCCce
Q 003360 375 TEGPT-VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-D---SSVLVLDSDNGNM 431 (826)
Q Consensus 375 ~~~~~-~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-D---g~V~iwd~~tg~~ 431 (826)
+.++. ....+. .+....... +.+ ++..|+..++ + +.|.++|+.++..
T Consensus 266 ~~~~~~~~~~l~---~~~~~~~~~-~~~------~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 266 LSQENAPLLTVQ---GDLDADVSL-VDN------KGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp TTSTTCCCEEEE---CSSSSCEEE-EEE------ETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred CCCCCCceEEEe---CCCCceEEE-Eec------cCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 97763 121111 223333333 444 2555554443 3 5799999987654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.5e-06 Score=93.47 Aligned_cols=148 Identities=11% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
++..+++|+.||.|+.||+ ++..+ ..... ..+.+..+..++..+++++.||.|+.||..+++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w- 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---WTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT- 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---EEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---EEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-
Confidence 5678999999999999998 55442 22321 133344445677788888999999999997553310
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
...+. ........++ +. .+..|++|+.||.|+.||..++++++...... ...+.
T Consensus 74 ----~~~~~----------~~~~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------~~~~~ 127 (369)
T 2hz6_A 74 ----KLPFT----------IPELVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------ADSLS 127 (369)
T ss_dssp ----ECSCC----------HHHHHTTCSC----C------CCCCEEEEEEEEECCC------------------------
T ss_pred ----eeecc----------CccccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------ccccc
Confidence 00000 0000001111 11 24468888999999999999999886554211 12334
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
| ++..+++++.|+.|+.||..+|+.+..+
T Consensus 128 p------~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 128 P------STSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred c------cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 4 4788999999999999999999877554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00044 Score=75.20 Aligned_cols=76 Identities=4% Similarity=-0.098 Sum_probs=57.9
Q ss_pred EEEccCCCEEEEEec-C--------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE-CCCc
Q 003360 352 LNMNRNSQHLAVGSD-Q--------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT-KDSS 420 (826)
Q Consensus 352 l~~s~~g~~lasGs~-d--------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs-~Dg~ 420 (826)
++++++++++.++.. + +.+.+||+.+.+++...... .....+.|++ |+. .+++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~------Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQ------DGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECC------SSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECC------CCCEEEEEccCCCCe
Confidence 689999998887654 2 35669999999988554432 1477899998 576 455555 5899
Q ss_pred EEEEECCCCceEEeeec
Q 003360 421 VLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~ 437 (826)
|.+||..+++.+.++.+
T Consensus 339 VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 339 LDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEESSSCEEEEECCC
T ss_pred EEEEECCCCcEEEEEEC
Confidence 99999999999988643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.95 E-value=0.084 Score=65.87 Aligned_cols=428 Identities=12% Similarity=0.163 Sum_probs=206.8
Q ss_pred cceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEc
Q 003360 15 QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMG 94 (826)
Q Consensus 15 ~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~g 94 (826)
.+.|.+.+..++.+++.+.++|.+.+-.+........ ...+..+.+.+-.....-..+.+. +.|.||+..
T Consensus 275 ~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~------~~~V~~l~i~~~~~~~~~ssl~~l----~~g~lFvgS 344 (1158)
T 3ei3_A 275 TIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDG------TVTLKDLRVELLGETSIAECLTYL----DNGVVFVGS 344 (1158)
T ss_dssp CEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----------CEEEEEEEEEEEECSCCSEEEEC----STTEEEEEC
T ss_pred eEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccC------ceeEEEEEEEEcCCccCccEEEEE----CCCEEEEEE
Confidence 4555555556778999999999998865543100000 000111111000000000122222 234555542
Q ss_pred cCCcCccceeEEEEcccCCc-ceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEec---cCccEEEecchhHHHHHh
Q 003360 95 ASDFVSMNLLQIVLLNEQTE-SRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLG---KSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 95 g~~~~~~~~~~vl~~~~~~~-~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~---~~G~l~~~d~~~i~~~~~ 170 (826)
..|...++++........ +-.+.-.++.-+|+.||.+.... ...++.+++++ ..|.|.++-.+-
T Consensus 345 --~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~----~~~~~~i~~~sG~g~~gsL~~lr~Gi------ 412 (1158)
T 3ei3_A 345 --RLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLE----RQGQGQLVTCSGAFKEGSLRIIRNGI------ 412 (1158)
T ss_dssp --SSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTT----SSSCCEEEEEECCGGGCEEEEEEESB------
T ss_pred --ecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccC----CCCCCeEEEEECcCCCCeEEEEecCC------
Confidence 233344444433322111 11233456777899999987532 12234555544 346666542221
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEe---eCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLI---TGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLF 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs---~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l 246 (826)
.+ .......++.. ..++.+... ..+.+++.+. +++ +++......+... ... .|..+...|
T Consensus 413 ------~~--~~~~~~~l~gv-~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev--~~~----gf~~~~~TL 476 (1158)
T 3ei3_A 413 ------GI--HEHASIDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEVEET--ELM----GFVDDQQTF 476 (1158)
T ss_dssp ------CE--EEEEEECCCSC-CEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEEEEE--CCT----TCCSSSCEE
T ss_pred ------CE--EEEEeecCCCc-cEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCccccc--ccc----cccCCCCcE
Confidence 00 00011112221 344444432 2345666666 555 2332111111111 000 144444555
Q ss_pred EEEECC---------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 247 ITGHSD---------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 247 ~Tgs~D---------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
++|.-. ..||+.+...... +..... ..+..|.+.+.+. .+++.++ .+.+.++.+..+.
T Consensus 477 ~~~~l~~~~ivQVt~~~Irli~~~~~~~--~~~w~~-------p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~- 543 (1158)
T 3ei3_A 477 FCGNVAHQQLIQITSASVRLVSQEPKAL--VSEWKE-------PQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQE- 543 (1158)
T ss_dssp EEEEETTTEEEEEESSCEEEEESSSCCE--EEEECC-------TTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTE-
T ss_pred EEEEcCCCeEEEEecCEEEEEECCCCeE--EEEEEC-------CCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc-
Confidence 555421 2355555532211 111211 1224566666543 3566665 6788888876311
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC------CCEEEEEec-CCeEEEEecCCCeeEEeeecccCC
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN------SQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
+. . .........|+|+++.+. +.++|+|.+ |++|+|+++.+.+.+....+. .
T Consensus 544 -----L~-----------~---~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~--~ 602 (1158)
T 3ei3_A 544 -----LR-----------Q---ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG--G 602 (1158)
T ss_dssp -----EE-----------E---EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC--S
T ss_pred -----ee-----------e---ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC--C
Confidence 11 0 222234668999999864 369999997 999999999887777544432 2
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEE--EEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVL--VLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~--iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
...+.++.+... . ...+|++|-.||.+. .+|..+|.+...-.... ....+.+..+..
T Consensus 603 ~~~p~si~l~~~--~--~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L--G~~pv~L~~~~~--------------- 661 (1158)
T 3ei3_A 603 EIIPRSILMTTF--E--SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL--GTQPTVLRTFRS--------------- 661 (1158)
T ss_dssp SCCEEEEEEEEE--T--TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC--CSSCCEEEEEES---------------
T ss_pred CCCCcEEEEEEe--C--CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc--CCCceEEEEEee---------------
Confidence 235566665543 1 257899999999874 45555676553311111 112233333321
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~sl 547 (826)
.....|++|+++-.-+|.-.+ +-.+..+.. ....+++.|.+ .-..++++.. ++.++|..+
T Consensus 662 -----------~~~~~V~a~s~rp~liy~~~~-----~l~~s~l~~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i 722 (1158)
T 3ei3_A 662 -----------LSTTNVFACSDRPTVIYSSNH-----KLVFSNVNL--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTI 722 (1158)
T ss_dssp -----------SSCEEEEEESSSCEEEEESSS-----SEEEEEBSS--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEE
T ss_pred -----------CCceeEEEECCCCEEEEEcCC-----ceEEeccCh--HHhceEeccCcccCCCcEEEEc-CCceEEEEe
Confidence 012367778787766765431 111222222 23334555555 3345666554 455899888
Q ss_pred CCccccc
Q 003360 548 PELSLLK 554 (826)
Q Consensus 548 P~L~~l~ 554 (826)
+.+..+.
T Consensus 723 ~~~~~~~ 729 (1158)
T 3ei3_A 723 DEIQKLH 729 (1158)
T ss_dssp CCSSSEE
T ss_pred cccCCee
Confidence 8765543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0063 Score=72.11 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=52.7
Q ss_pred EEEEEeCCCCEEEEEeCCCc-------------------EEEEEeCCCCCccccceEEEeecC-CCCeEEEEEEEEeecc
Q 003360 287 TALYYDGTSRVLVSGDQSGM-------------------VRIFKLKYEPHAIENSFLSFTGSK-KGNSHIIHSVKVMKIN 346 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~-------------------V~iwd~~~~~~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~ 346 (826)
..++++|+..+++++..++. |..||..+++.. ....... +... ....
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-----W~~~~~~~d~wd--------~~~~ 304 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-----WHYQTTPGDAWD--------YTAT 304 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-----EEEESSTTCCSC--------CCCC
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-----EeeecCCccccc--------ccCC
Confidence 36789999999999988874 788888755321 1100000 0000 0011
Q ss_pred CCeEEEEEccCCC---EEEEEecCCeEEEEecCCCeeEEeee
Q 003360 347 GSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 347 ~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.++.......+|+ .|+.++.+|.++++|..+++++....
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 2222223333564 68899999999999999999985443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.036 Score=56.72 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=117.7
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..+++.+++..++.+. .+.|..++........+.......... ++++ +.++++-..++.|.++|..+.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567889998776666554 667777765433222221111112223 7775 5566777778899999986544211
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+ +. ........++++|++..|.++.. .+.|..+++..... .. +.. .
T Consensus 116 ~--~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------------~~----~~~-~ 164 (267)
T 1npe_A 116 L--FD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------------RI----LAQ-D 164 (267)
T ss_dssp E--EC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------------EE----EEC-T
T ss_pred E--EE--------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------------EE----EEE-C
Confidence 1 11 01135689999997766666554 35777777652211 00 100 1
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEE
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVL 422 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~ 422 (826)
.-.....+++++++..|.++. ..+.|.++|+.+........ . ......++.. +..|+++. ..+.|.
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d--------~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY--------GKNLYYTDWKTNSVI 232 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE--------TTEEEEEETTTTEEE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe--------CCEEEEEECCCCeEE
Confidence 123478899999877665554 56899999997654332111 1 1223445432 34455554 568999
Q ss_pred EEECCCCceEEeee
Q 003360 423 VLDSDNGNMLSTNL 436 (826)
Q Consensus 423 iwd~~tg~~i~~~~ 436 (826)
++|..+|+.+.++.
T Consensus 233 ~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCCceEEEc
Confidence 99999999887763
|
| >1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.7e-05 Score=67.80 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred cchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 757 GAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
..+.+|+.+-- ++.......-+++.||||||+.|.+||++|++.|+.|...|++|.++|-=+
T Consensus 30 d~l~~vq~eld----eVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 30 RRLQQTQAQVD----EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555533 344677778889999999999999999999999999999999999987533
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0051 Score=68.04 Aligned_cols=150 Identities=10% Similarity=0.022 Sum_probs=96.7
Q ss_pred CCCCEEEEE-ECC----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------CCC
Q 003360 241 KVKNLFITG-HSD----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------QSG 305 (826)
Q Consensus 241 ~~~~~l~Tg-s~D----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~dg 305 (826)
++++.+.+. ..+ ++|.+.|...... +..+. .-..+ .+.++|+++.|+++. .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v--v~~I~--------vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI--LGMTD--------GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE--EEEEE--------ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE--EEEEE--------CCCCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 445544444 433 7999999954442 22232 12234 899999999888886 467
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-e----ccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCC
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-K----INGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGP 378 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~----~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~ 378 (826)
.|.++|..+.... .. +... . .......+.|+|||+++.+++. ++.|.++|+.+.
T Consensus 150 ~VsviD~~t~~vv-----~~--------------I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 150 YVEVFDPVTFLPI-----AD--------------IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEEEECTTTCCEE-----EE--------------EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEECCCCcEE-----EE--------------EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 8999998854321 01 1111 0 0122456899999999999874 588999999999
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
+++.+..... +....|. ....+++.+.||++.+.+..+++...
T Consensus 211 kvv~~I~v~g-------~~~~~p~-----g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 211 TFDRMLDVPD-------CYHIFPA-----SPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp EEEEEEECCS-------EEEEEEE-----ETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred eEEEEEEcCC-------ceeeccC-----CCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 9886555321 1222231 14567778889999999997666553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0022 Score=69.00 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=123.1
Q ss_pred CCEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecc-c-----ccCCccee--eCCCCCEEEEEEC-----CCcEE
Q 003360 193 SSITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFE-T-----KLKDGSQS--HSKVKNLFITGHS-----DGAIN 256 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~-~-----~h~g~V~~--~s~~~~~l~Tgs~-----DGtVr 256 (826)
..++.++++++++.+++.. ++.+++|......+..+. + .|...+.. ++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 5678899999999988853 343455532222333321 1 12334444 8889888887654 68899
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EEEe---CCCcEEEEEeCCCCCcccc----ceE--EE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VSGD---QSGMVRIFKLKYEPHAIEN----SFL--SF 326 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-asgs---~dg~V~iwd~~~~~~~~~~----~~~--~i 326 (826)
+||.....+...+.+... ...+...+..|++++++..+ ++.. .++.|.+||+.++...... ... ..
T Consensus 97 ~~d~~tg~~~~~~~~~~~----~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPP----ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEETTTTEEEEEEECCTT----TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEECCCCeEEEEEECChh----hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 999954442222222211 11233467899999875555 4444 5789999998755321000 000 00
Q ss_pred eecCCCCeEEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCC-eEEEEecC---CCee-----EEeeecccCCCCCee
Q 003360 327 TGSKKGNSHIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQG-YVYLLDTE---GPTV-----LYQKHIASDISSGIV 395 (826)
Q Consensus 327 ~~s~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG-~V~vwD~~---~~~~-----l~~~~~~~~~~~~V~ 395 (826)
.+..++....... -........+..|+|+|+|+.|.++..++ .|..+|.. .+.. ...+.. .++.....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pd 251 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICD 251 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCS
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCc
Confidence 0001111000000 00000123468899999999999888776 44444432 1110 000000 01122345
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.+++++ ++.++++...++.|.+||..+|+.
T Consensus 252 gia~d~------~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 252 GISIDK------DHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CEEECT------TCCEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEECC------CCCEEEEccCCCeEEEEECCCCCE
Confidence 577777 577777777889999999855764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.086 Score=63.38 Aligned_cols=214 Identities=13% Similarity=0.174 Sum_probs=125.6
Q ss_pred CCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccc-------cCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 192 DSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK-------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~-------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
...|.++....++...+...++-+..|+.....+..+... ....|.+ ..+++.+.+ |+.+ -|.+||...
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 4568888777776654443343455665544333333111 1244666 456666444 5555 588899865
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
..... +.......-......|.+|...+++. |-+|+.++-|..|+...... ..+.......
T Consensus 292 ~~~~~---~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------~~~~~~~~~~--------- 352 (795)
T 4a2l_A 292 DSFAS---YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------KNIRNIPYKN--------- 352 (795)
T ss_dssp TEEEE---ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------EEECCCTTSS---------
T ss_pred CeEEE---EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------eEEcCCCCCC---------
Confidence 55322 21110111123446899999999887 44577777788888653321 1111000000
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc-----cCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-----SDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-----~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
......|.++...++|. |-+|+.++-|..||..++......... ......|.++.... ++..|++|+.
T Consensus 353 ~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~------~g~~lWigt~ 425 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE------KKSLVYIGTH 425 (795)
T ss_dssp SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET------TTTEEEEEET
T ss_pred CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC------CCCEEEEEeC
Confidence 01134599999999886 667888877899999877654222110 01235688887765 3555899998
Q ss_pred CCcEEEEECCCCceEE
Q 003360 418 DSSVLVLDSDNGNMLS 433 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~ 433 (826)
++-|..||..++++..
T Consensus 426 ~~Gl~~~d~~~~~~~~ 441 (795)
T 4a2l_A 426 AGGLSILHRNSGQVEN 441 (795)
T ss_dssp TTEEEEEETTTCCEEE
T ss_pred cCceeEEeCCCCcEEE
Confidence 8889999999887543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0027 Score=67.06 Aligned_cols=217 Identities=9% Similarity=0.060 Sum_probs=119.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL 225 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~ 225 (826)
..+++++..|.|+.|| ..-+ ...........+..+.+..++ .++.+.++ +..++......
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~-----------------~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~-l~~~d~~g~~~ 90 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGS-----------------VKWFFKSGEIIECRPSIGKDG-TIYFGSDK-VYAINPDGTEK 90 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSC-----------------EEESSCGGGEEEECCEETTTT-EECCSSCE-EEEECCCGGGG
T ss_pred CeEEEEcCCCEEEEEC-CCCc-----------------EEEEEecCCCcccceEEecCC-cEEEecCc-EEEECCCCcEE
Confidence 4466677778888888 4310 000011122233444444444 45555544 66665432222
Q ss_pred eecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 LDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
..+ .....+.. .. +..|..|+.+|.|..+|..+... .... .+...+.++...+++. +.+|+
T Consensus 91 ~~~--~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~---~~~~--------~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 91 WRF--DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEK---WRFK--------TKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp GGS--CC-----CCEEEE--TTEEEEECTTSEEEEECTTSCEE---EEEE--------CSSCCCSCCEECTTSC-EEEEC
T ss_pred EEE--ECCCCcccCceEE--CCEEEEEecCCEEEEEcCCCCEE---EEEc--------CCCceeeeeEEcCCCE-EEEEc
Confidence 222 11122212 32 55677788899999999873331 1111 1222345566666666 66677
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.++.|..||.. +... .........+.++.+.+++. |.+|+ +.|..+| .++..++
T Consensus 155 ~~~~l~~~d~~-g~~~---------------------~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEK---------------------WRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp TTSEEEEECTT-SCEE---------------------EEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEE
T ss_pred CCCEEEEECCC-CCEe---------------------EEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEE
Confidence 88888888876 3210 11111233466677777776 55566 7789999 6777765
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.... ....+.++...+ ...|++++.++.|..+|. +|+.+..+
T Consensus 209 ~~~~---~~~~~~~~~~~~-------~g~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 209 NFYA---GYWTVTRPAISE-------DGTIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp EECC---SSCCCSCCEECT-------TSCEEEEETTTEEEEECT-TSCEEEEE
T ss_pred EEcc---CCcceeceEECC-------CCeEEEEcCCCeEEEECC-CCCEeEEe
Confidence 4442 223455555544 346888898899999985 57666554
|
| >1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=65.59 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred ccchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 756 TGAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
...+.+|+.+-. ++.......-+++.||||||+.|.+||++|++.|+.|...|++|-++|
T Consensus 14 ~d~l~~vq~el~----ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 14 SKRLQQTQAQVE----EVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp SCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred ccHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666543 344677778889999999999999999999999999999999998775
|
| >2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.51 E-value=2e-05 Score=70.11 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=42.9
Q ss_pred chHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 774 PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 774 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.......-+++.||||||+.|++||++|+++|+.|...|++|.++|-
T Consensus 46 k~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw 92 (119)
T 2kog_A 46 VDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 92 (119)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778899999999999999999999999999999999999874
|
| >3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A | Back alignment and structure |
|---|
Probab=97.49 E-value=5.4e-05 Score=64.07 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=41.5
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhh
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEH 821 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 821 (826)
.....--+++.||||||+.|.+||++|+++|+.|...|++|-++|-=
T Consensus 19 ~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmww 65 (91)
T 3hd7_A 19 DIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 65 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667999999999999999999999999999999999998743
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0032 Score=66.47 Aligned_cols=214 Identities=10% Similarity=0.061 Sum_probs=119.5
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..+++.+..|.|+.||...- . ......+...+.++...+++. ++.+. ++.+..++....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~--~----------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGT--E----------------KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSC--E----------------EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSC
T ss_pred CCEEEEEecCCEEEEEcCCCC--E----------------EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCC
Confidence 355777777888988886520 0 011112222334444555665 45555 688888876532
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
....+. .....+.+ ..+++.+++.. +.|..||.++... .... .....+.++...+++. |.++
T Consensus 168 ~~~~~~-~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~---~~~~--------~~~~~~~~~~~~~~g~-l~v~ 231 (330)
T 3hxj_A 168 EKWRFK-TNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEK---WNFY--------AGYWTVTRPAISEDGT-IYVT 231 (330)
T ss_dssp EEEEEE-CSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEE---EEEC--------CSSCCCSCCEECTTSC-EEEE
T ss_pred EeEEEe-cCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEE---EEEc--------cCCcceeceEECCCCe-EEEE
Confidence 222221 11223333 55677766544 8899999544432 1121 1224577788888775 5556
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.++.|..|+.. +. .. .........+.++.+.+++ .|.+|+.+|.|..+|. +++.+
T Consensus 232 t~~~gl~~~~~~-g~-----------------~~----~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 232 SLDGHLYAINPD-GT-----------------EK----WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp ETTTEEEEECTT-SC-----------------EE----EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred cCCCeEEEECCC-CC-----------------Ee----EEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 677777777632 11 10 1111112223345555566 5788899989999996 67766
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...... ...+.++.... +..|++++.+|.+++.+..
T Consensus 288 ~~~~~~---~~~~~~~~~d~-------~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 288 WNFETG---SWIIATPVIDE-------NGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEECS---SCCCSCCEECT-------TCCEEEECTTSCEEEEEC-
T ss_pred EEEEcC---CccccceEEcC-------CCEEEEEcCCCeEEEEecc
Confidence 554431 23344444433 4568889999999998876
|
| >3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=7.4e-05 Score=58.16 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 776 VAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 776 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
....--+++.||||||+.|.+||++|++.|..|..-|+.|-++|
T Consensus 17 iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 17 IMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445679999999999999999999999999999999999887
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.017 Score=62.61 Aligned_cols=75 Identities=3% Similarity=-0.135 Sum_probs=54.2
Q ss_pred EEEeCCCCEEEEEeC---------CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 289 LYYDGTSRVLVSGDQ---------SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 289 l~fsp~~~~Lasgs~---------dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
++|+|+++.+.++.. ++.+.+||+.+.+. +...........|+|+++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v----------------------v~~i~vg~~p~gi~~s~Dg~ 326 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT----------------------SGPISNGHDSDAIIAAQDGA 326 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE----------------------EECCEEEEEECEEEECCSSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE----------------------EEEEECCCCcceEEECCCCC
Confidence 689999988887643 23567999985533 22222233578999999998
Q ss_pred E-EEEEe-cCCeEEEEecCCCeeEEeee
Q 003360 360 H-LAVGS-DQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 360 ~-lasGs-~dG~V~vwD~~~~~~l~~~~ 385 (826)
+ +++.. .++.|.|||+.+.+++.+..
T Consensus 327 ~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 5 45555 48999999999999985543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0077 Score=64.61 Aligned_cols=212 Identities=7% Similarity=0.011 Sum_probs=117.3
Q ss_pred ccCCCEEEEEEeeCCCeEEEec------CCcEEEeccCCCc-eeecccc-----cCCccee--eCCC-CCEEEEEE---C
Q 003360 190 FLDSSITAMKLITGNSFILSSA------DEDYSLLAKSVPP-LLDFETK-----LKDGSQS--HSKV-KNLFITGH---S 251 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~------d~~i~~w~~~~~~-~~~~~~~-----h~g~V~~--~s~~-~~~l~Tgs---~ 251 (826)
.|-..+..+++.++++..++.. +..|.+|+..... ...+..+ +...... ++++ +.++++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3446788999999987666543 3578888755433 2222111 1122333 6764 56677776 7
Q ss_pred CCcEEEEeCCCCceeeeeecccc-cc----ccccc----------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQ-SE----KDFSL----------------SGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~-~~----~~~~~----------------h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
++.|.+||....... ..+... .. ..+.. -...+..|+|+|+++.|+++..++. ++|
T Consensus 144 ~~~i~v~d~~~g~~~--r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~ 220 (343)
T 2qe8_A 144 KAALIRVDLQTGLAA--RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMY 220 (343)
T ss_dssp GCEEEEEETTTCCEE--EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEE
T ss_pred CCeEEEEECCCCCEE--EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEE
Confidence 899999999433321 112110 00 00000 0124688999999999999887774 566
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.+....... ..+. ..+-... +......+....++++++|.++++...++.|.+||..+++...... ...
T Consensus 221 ~~~~~~~~~-~~~~---~~~~~~~-----~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~--~~~ 289 (343)
T 2qe8_A 221 RIKSADLSN-LQLT---DAELGSK-----IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT--DEK 289 (343)
T ss_dssp EEEHHHHTC-TTCC---HHHHHTT-----CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE--CGG
T ss_pred EEEHHHhcC-CCCC---hhhhhcc-----eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE--CCc
Confidence 654210000 0000 0000000 1111123346678999999988888899999999995565432222 122
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+.+++|.+ ++.++++.+..+.+
T Consensus 290 ~~~p~~va~~~------~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 290 LSWTDSFNFGS------DGYLYFDCNQLHHS 314 (343)
T ss_dssp GSCEEEEEECT------TSCEEEEECCGGGS
T ss_pred eecCCeeEECC------CCcEEEEeCccccc
Confidence 44577888876 45555555444333
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.078 Score=62.39 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=46.8
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|..||+.+++++.+..... ++....... .+.++++++.|+.|++||..+|+.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t------~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT----HWNGGTLST------AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS----SCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEccCCC----CCcCceeEe------CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 4889999999999997665321 222223333 3788999999999999999999999887543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.034 Score=56.67 Aligned_cols=152 Identities=12% Similarity=0.191 Sum_probs=93.7
Q ss_pred eCCCCCEEEEEECCC--cEEEEeC-CCCceeeeeecccccccccccCCCCeE--EEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 239 HSKVKNLFITGHSDG--AINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLT--ALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--tVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~--~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
|+ ++.++.+.+.+| +|+++|+ +++.. ..+. .. .... .+++.. .++.+....++.+.+||..
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~--------l~-~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTL---QQIE--------LG-KRYFGEGISDWK-DKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEE---EEEE--------CC-TTCCEEEEEEET-TEEEEEESSSSEEEEEETT
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEE---EEEe--------cC-CccceeEEEEeC-CEEEEEEeeCCEEEEEECc
Confidence 56 677888888877 9999999 44442 1122 11 1222 233332 2334444568899999987
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
+... +......+ ....+++++..|+....++.|.++|..+.+++.+..... ...+
T Consensus 116 t~~~----------------------~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~ 170 (262)
T 3nol_A 116 NLRQ----------------------VRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE 170 (262)
T ss_dssp TCCE----------------------EEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE
T ss_pred cCcE----------------------EEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc
Confidence 4432 22222222 112334567777777778889999999999886555421 1222
Q ss_pred ---eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 394 ---IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 394 ---V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+..+.|. ++. |++.. .+..|.++|..+|+.+..+..
T Consensus 171 ~~~lNELe~~-------~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 171 LPELNELEWV-------DGE-IFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp CCCEEEEEEE-------TTE-EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccceeEEE-------CCE-EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 3345664 254 66665 577999999999999988654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.22 Score=57.32 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=45.0
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|..||+.+++++.+..... ++.+..... .+..+++++.|+.|++||..+|+.+..+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t------~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYT------KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS----CCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEecCCC----CccceeEEE------CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 5789999999999986665321 122111222 2677888999999999999999999886543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.17 Score=59.59 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=51.3
Q ss_pred EEEEEeCCCCEEEEEeCCCc-------------------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 287 TALYYDGTSRVLVSGDQSGM-------------------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~-------------------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
..+++.|+..++++++.++. |..+|..+++.. + ..+...+
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~-----W--------------~~~~~~~~~ 293 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA-----W--------------HYQVTPGDS 293 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-----E--------------EEESSTTCC
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee-----e--------------EeecCCCcc
Confidence 35788999999999988774 666776644321 0 0111111
Q ss_pred -----cCCeEEEEEccCCC---EEEEEecCCeEEEEecCCCeeEEee
Q 003360 346 -----NGSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 346 -----~~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
..+.....+..+|+ .|++++.+|.++++|..+++++...
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 12333333334664 6889999999999999999988544
|
| >2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=57.74 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=40.7
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.....--+++.||||||+.|.++|++|++.|..|..-|+.|-++|-
T Consensus 22 ~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 22 DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556799999999999999999999999999999999988873
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.017 Score=59.41 Aligned_cols=157 Identities=8% Similarity=0.059 Sum_probs=94.6
Q ss_pred eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHS--DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+++++.++++.+. +++|++.|+..... +..+... .......+++.. +++.++...++.|.+||..+.+
T Consensus 28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v--~~~i~l~-------~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 28 YAENDTLFESTGLYGRSSVRQVALQTGKV--ENIHKMD-------DSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp ECSTTEEEEEECSTTTCEEEEEETTTCCE--EEEEECC-------TTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTE
T ss_pred EeCCCeEEEECCCCCCCEEEEEECCCCCE--EEEEecC-------CCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCc
Confidence 6777766666554 68999999944432 1222200 111223455542 2444455567899999987432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC--CCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD--ISSG 393 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~--~~~~ 393 (826)
. +...... .. ...++++|+++.++..++.|.++|..+.+++........ .-..
T Consensus 98 v----------------------~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 98 N----------------------IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp E----------------------EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred E----------------------EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 2 1111111 11 133556788888888889999999999888855543221 0112
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+..+.|.. + .+++.. .++.|.++|..+|+.+..+.+
T Consensus 154 ~nele~~d-------g-~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 154 LNELEYIN-------G-EVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEEEEEET-------T-EEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEC-------C-EEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 44566552 5 455555 578999999999999988753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.087 Score=57.98 Aligned_cols=192 Identities=11% Similarity=0.145 Sum_probs=112.8
Q ss_pred eCCCeEEEec--CCcEEEeccCCC----ceeecccc--c--CCccee-----eCCCCCEEEEEECC------CcEEEEeC
Q 003360 202 TGNSFILSSA--DEDYSLLAKSVP----PLLDFETK--L--KDGSQS-----HSKVKNLFITGHSD------GAINFWDV 260 (826)
Q Consensus 202 ~~~~~l~~~~--d~~i~~w~~~~~----~~~~~~~~--h--~g~V~~-----~s~~~~~l~Tgs~D------GtVriWD~ 260 (826)
.++++++..+ +..|.+++.... .+.....+ . +-+... ..|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7888888866 778888865422 22211000 0 111111 67888 88887766 78999998
Q ss_pred CCCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEe-------------------CCCcEEEEEeCCCCCccc
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGD-------------------QSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs-------------------~dg~V~iwd~~~~~~~~~ 320 (826)
.+... +..+... ... .--..+.|+|+.+.+++.. .+.+|.+||+.++..
T Consensus 172 ~T~~v--~~~~~~~------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--- 240 (462)
T 2ece_A 172 YSFEP--LGKWEID------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--- 240 (462)
T ss_dssp TTCCE--EEECCSB------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---
T ss_pred CCCeE--EEEEccC------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---
Confidence 54332 1222210 011 1123577899999888885 368999999984311
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--ccCCCEEEEEec------CCeEEEEecCCCeeEEee--ecccC-
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--NRNSQHLAVGSD------QGYVYLLDTEGPTVLYQK--HIASD- 389 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~--~~~~~- 389 (826)
+.. +...........|.| +|+++++.++++ +++|.+|....+...... .+...
T Consensus 241 --~~t--------------I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~ 304 (462)
T 2ece_A 241 --IHS--------------LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP 304 (462)
T ss_dssp --EEE--------------EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred --eeE--------------EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence 000 111101112344545 999999888875 568888777655322111 11110
Q ss_pred --------------CCCCeeEEEEeecccCCCCCcEEEEEEC-CCcEEEEECC
Q 003360 390 --------------ISSGIVSLQFETCSLQGFEKNFLVIATK-DSSVLVLDSD 427 (826)
Q Consensus 390 --------------~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~ 427 (826)
....+..|.+++ |+++|+++.. .+.|.+||+.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~------DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISL------DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECT------TSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccCCCceeEEEECC------CCCEEEEEeCCCCEEEEEEec
Confidence 013466777887 7999988876 5789999985
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.16 Score=53.36 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=109.0
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-------------------cCCccee--eCC-CCCEEEEEEC
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-------------------LKDGSQS--HSK-VKNLFITGHS 251 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-------------------h~g~V~~--~s~-~~~~l~Tgs~ 251 (826)
...+++.+++..++++. ++.|..|+.....+..+... ..+.... +.+ +++++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~- 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC- 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence 45567788888778776 77888786544333322100 0012233 665 566555543
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEEeC
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQ-----------------SGMVRIFKLK 313 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~-----------------dg~V~iwd~~ 313 (826)
.+.|..+|..+.....+.... . .........+++.+ ++++.++-.. +|.|..||..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~----~--~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSV----D--GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTEEEEECTTCEECEEEESEE----T--TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCEEEEeCCCCEEEEecccC----C--CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 445888887544321211100 0 00113578899999 8876665432 2556666654
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCC---eeEEeeecccC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGP---TVLYQKHIASD 389 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~---~~l~~~~~~~~ 389 (826)
++.. .. + ...-.....|+++++|++|.++ +..+.|.+||+.+. .......
T Consensus 174 ~~~~-----------------~~---~--~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---- 227 (322)
T 2fp8_A 174 TKET-----------------TL---L--LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---- 227 (322)
T ss_dssp TTEE-----------------EE---E--EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----
T ss_pred CCEE-----------------EE---e--ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----
Confidence 2211 00 1 0011234678999999866665 55689999998753 1110011
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEEC----------CCcEEEEECCCCceEEee
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATK----------DSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~----------Dg~V~iwd~~tg~~i~~~ 435 (826)
... ...+++.+ ++.+.++... .+.|..+|.. |+.+..+
T Consensus 228 ~~g-P~gi~~d~------~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 228 IPN-PGNIKRNA------DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp CSS-EEEEEECT------TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred CCC-CCCeEECC------CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 112 56677766 4664444333 3678888875 7777665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.16 Score=53.50 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=106.7
Q ss_pred CEEEEEEee-CCCeEEEecCCcEEEeccCCCceeecccccC----Cccee--eCC-CCCEEEEEEC--------------
Q 003360 194 SITAMKLIT-GNSFILSSADEDYSLLAKSVPPLLDFETKLK----DGSQS--HSK-VKNLFITGHS-------------- 251 (826)
Q Consensus 194 ~Vt~~~fs~-~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~----g~V~~--~s~-~~~~l~Tgs~-------------- 251 (826)
.+..+++.+ ++..+++.....+..++........+..... ..... +.+ +|+++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467888887 5554444344445555543222222211001 11222 778 8888777532
Q ss_pred ---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEe
Q 003360 252 ---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 252 ---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+|.|..||........+ .. .......|+|+|+++.|.++ ...+.|.+|++.....
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~--~~---------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------- 219 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLL--LK---------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------- 219 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEE--EE---------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----------
T ss_pred cCCCceEEEEeCCCCEEEEe--cc---------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----------
Confidence 36788888754432111 00 00234579999999876666 4567899999874321
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCC-CCCeeE
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDI-SSGIVS 396 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~-~~~V~s 396 (826)
+.... +. ...+ ...|++.++|.+.++... .+.|..+|.. ++.+.......+. -..+++
T Consensus 220 ----~~~~~---~~--~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 220 ----GTAEV---LV--KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp ----TCEEE---EE--ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCE
T ss_pred ----Cccce---EE--eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceE
Confidence 00100 11 1234 678999999986665544 4678899974 6655444432221 234566
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.+. ++.+.++....+.|..+++.
T Consensus 289 ~~~~-------~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 289 IQEH-------DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEE-------TTEEEEECSSCSEEEEEEC-
T ss_pred EEEe-------CCEEEEeecCCCceEEEecc
Confidence 6652 24444444466788888875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.021 Score=58.25 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
++.++++.+.+|.|+++|+ +++....+ +.. ...--.+++.. .++.+....++.+.+||..+.+.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---------~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~--- 128 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---------NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQR--- 128 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---------TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEE---
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---------CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcE---
Confidence 4578888899999999999 55443222 220 01112344443 34555566788999999874322
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC---CeeEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS---GIVSL 397 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~---~V~sl 397 (826)
+........-..|+ ++++.|+++..++.|.++|..+.+++.+..... ... .+..+
T Consensus 129 -------------------~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeL 186 (268)
T 3nok_A 129 -------------------ERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINEL 186 (268)
T ss_dssp -------------------EEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEE
T ss_pred -------------------EEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccccccccc
Confidence 22222222222333 567788888889999999999999886555422 122 33455
Q ss_pred EEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 398 QFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.|.. + .|++.. .+..|.++|..+|+.+..+..
T Consensus 187 e~~d-------G-~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 187 ECAN-------G-VIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEET-------T-EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEeC-------C-EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 6652 5 466665 577999999999999988653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.65 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.9
Q ss_pred cCC---CEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 356 RNS---QHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 356 ~~g---~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.+| ..++.++.+|.++++|..+++++....
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 466 467779999999999999999997654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.08 Score=54.34 Aligned_cols=196 Identities=8% Similarity=-0.006 Sum_probs=115.9
Q ss_pred CEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeec-cc-ccCCcceeeCCC-CCEEEEEECCCcEEEEeCCCCceee
Q 003360 194 SITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDF-ET-KLKDGSQSHSKV-KNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~-~~-~h~g~V~~~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
....+.|++++...++.+ +..|++.+......... .. .+..+. .+..+ ++++++.-.++.|.++|..... .
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~g~~lyv~t~~~~~v~viD~~t~~--v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLLNEKLYQVVWLKNIGFIYDRRTLS--N 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEETTCSEEEEEETTTTE--E
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEeCCEEEEEEecCCEEEEEECCCCc--E
Confidence 467899998865544443 46788887655443332 11 111111 12222 3566666778999999985433 2
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
+..+... ..+ ...+++++..|+++..+++|.++|..+.... .. +.....
T Consensus 99 ~~~i~~g-----~~~-----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-----~~--------------I~Vg~~~~ 149 (266)
T 2iwa_A 99 IKNFTHQ-----MKD-----GWGLATDGKILYGSDGTSILYEIDPHTFKLI-----KK--------------HNVKYNGH 149 (266)
T ss_dssp EEEEECC-----SSS-----CCEEEECSSSEEEECSSSEEEEECTTTCCEE-----EE--------------EECEETTE
T ss_pred EEEEECC-----CCC-----eEEEEECCCEEEEECCCCeEEEEECCCCcEE-----EE--------------EEECCCCc
Confidence 2333311 011 1335667877777778889999998743321 00 111111
Q ss_pred -cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC----------CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 -NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD----------ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 -~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~----------~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-..+..+.|. +|...+....++.|.++|..+++++........ .......|+|.+ ++..+++
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~------~~~~lfV 222 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ------ENKRIFV 222 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET------TTTEEEE
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC------CCCEEEE
Confidence 1236778888 675444444678999999999999866654210 113557899998 4555554
Q ss_pred -EECCCcEEEEECCC
Q 003360 415 -ATKDSSVLVLDSDN 428 (826)
Q Consensus 415 -gs~Dg~V~iwd~~t 428 (826)
+....+|.+.++..
T Consensus 223 Tgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTCSEEEEEEEEE
T ss_pred ECCCCCeEEEEEEec
Confidence 55677888887653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.071 Score=54.34 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=106.7
Q ss_pred CCEEEEEEeeCCCeEEEec-CC--cEEEeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA-DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
+....+.|+ ++....+.+ ++ .++.++......... ......... ..+++ ++++....++.+.+||.....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-- 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-- 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--
Confidence 445778887 665555555 55 788887665444332 111222222 23333 455666678999999994333
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI- 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~- 345 (826)
.+.++.+. .+ ...+++++..|+++..++.|.++|..+..... . +.....
T Consensus 119 ~~~ti~~~------~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~-----~--------------I~V~~~g 168 (262)
T 3nol_A 119 QVRSFNYD------GE-----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR-----T--------------ITVTAHG 168 (262)
T ss_dssp EEEEEECS------SC-----CCCEEECSSCEEECCSSSEEEEECTTTCSEEE-----E--------------EECEETT
T ss_pred EEEEEECC------CC-----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEE-----E--------------EEeccCC
Confidence 12334422 11 12344677777777778889988877433210 0 111111
Q ss_pred --cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC---------CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 --NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD---------ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 --~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~---------~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-..+..|.|. +|...|....+..|.++|..+++++........ .......|+|+| ++..|++
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp------~~~~lfV 241 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK------EHHRLFV 241 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET------TTTEEEE
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC------CCCEEEE
Confidence 1235567776 676555555688999999999999866654211 123457899998 4667776
Q ss_pred EEC
Q 003360 415 ATK 417 (826)
Q Consensus 415 gs~ 417 (826)
.+.
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.32 Score=51.47 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=107.2
Q ss_pred CEEEEEEeeCCCeEEEecCC-cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 194 SITAMKLITGNSFILSSADE-DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~-~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.+..+.+..++..++.+.++ .++..+....+.... .++.+.+.+ +.+++.+++.+...+..+-+|..+.....+
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-- 199 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV-QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-- 199 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE-CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--
T ss_pred CeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee-cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--
Confidence 35667777777766666555 345555444343322 344555666 788888887765544444455434443221
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe--eccCC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM--KINGS 348 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~--~~~~~ 348 (826)
. ......+..+.+.+++..+++ +.+|.+.+++...+.. +.+ +... .....
T Consensus 200 -~-------~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t----------W~~---------~~~~~~~~~~~ 251 (327)
T 2xbg_A 200 -N-------RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN----------WGE---------LLSPLRRNSVG 251 (327)
T ss_dssp -E-------CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE----------ECC---------CBCTTSSCCSC
T ss_pred -C-------CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe----------eEe---------ccCCcccCCcc
Confidence 1 123357889999998876654 4678776654210100 000 0000 01224
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
+.++.+.+++.++++|. +|.| ++....+..-............+.++.|.. ...+++++.+|.|.-++.
T Consensus 252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-------~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-------PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-------TTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-------CCceEEEcCCceEEEEcC
Confidence 78899998887666655 6766 444444432211111112235677888875 455778888998877764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.31 Score=56.25 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.+|.|..||+.+++++.+..... ++.+-.... .+..+++++.|+.|+.||.++|+.+-.+..
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~t------agg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF----AVWGGTMAT------AGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS----CCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcCeEEEEECCCCCEEeEecCCC----CccCcceEe------cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 35789999999999987664321 111101111 377888999999999999999999988643
|
| >1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00048 Score=54.24 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=36.0
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHH
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVL 816 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~ 816 (826)
.....--+++.||||||+.|.++|++|++.|..|..-|+.|-
T Consensus 23 ~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 23 NIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556679999999999999999999999999999998764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.13 Score=52.47 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=105.8
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
+....+.|. ++....+.+ ++.++.++.......... ....... ... .+++++....++.+.+||..... .+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~--~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ--RE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE--EE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc--EE
Confidence 345677776 344444455 778888876554433221 1222211 222 34677777789999999994433 23
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--- 345 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--- 345 (826)
.++.+. .++ ..+++++..|+++..++.|.++|..+..... . +.....
T Consensus 130 ~ti~~~------~eG-----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~-----~--------------I~V~~~g~~ 179 (268)
T 3nok_A 130 RTTRYS------GEG-----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVG-----A--------------VQVKLRGQP 179 (268)
T ss_dssp EEEECS------SCC-----CCEEEETTEEEEECSSSEEEEECTTTCCEEE-----E--------------EECEETTEE
T ss_pred EEEeCC------Cce-----eEEecCCCEEEEECCCCEEEEEcCCCCeEEE-----E--------------EEeCCCCcc
Confidence 334421 121 2333567888888888899999987543211 0 111111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
-..++.|.|. +|...|....+..|.++|..+++++....... ....-...|+|.+ ++..|++.
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp------~~~rlfVT 252 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP------GSGRIFMT 252 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT------TTCCEEEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC------CCCEEEEe
Confidence 1235667777 67555555568899999999999986655421 1223567799988 35555554
Q ss_pred E
Q 003360 416 T 416 (826)
Q Consensus 416 s 416 (826)
+
T Consensus 253 G 253 (268)
T 3nok_A 253 G 253 (268)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.7 Score=55.18 Aligned_cols=205 Identities=12% Similarity=0.154 Sum_probs=115.6
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecc---cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFE---TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~---~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
...|.++....++. ++.|. ++-+..|+........+. ......|.+ ..+++++.+ |+.++-+..+|......
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence 35688887776665 45555 555666654432222221 112344666 445666544 77777788898854442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. +... ......|.++...+++.+.+ |+..| |..|+..++.... +...... . ..
T Consensus 440 ~~---~~~~-----~~~~~~v~~i~~d~~g~lwi-gt~~G-l~~~~~~~~~~~~------~~~~~~~-~---------~~ 493 (781)
T 3v9f_A 440 QI---IELE-----KNELLDVRVFYEDKNKKIWI-GTHAG-VFVIDLASKKVIH------HYDTSNS-Q---------LL 493 (781)
T ss_dssp EE---CCST-----TTCCCCEEEEEECTTSEEEE-EETTE-EEEEESSSSSCCE------EECTTTS-S---------CS
T ss_pred EE---eccC-----CCCCCeEEEEEECCCCCEEE-EECCc-eEEEeCCCCeEEe------cccCccc-c---------cc
Confidence 11 1100 12346799999888776444 55544 7788876443210 0000000 0 01
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...|.++...++|. |-+|+.++-|..||..+.+...-.....-....|.++.... ...|+.|+.+|.|..||
T Consensus 494 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-------~g~lWi~T~~Glv~~~d 565 (781)
T 3v9f_A 494 ENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-------KGQMWLATGEGLVCFPS 565 (781)
T ss_dssp CSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-------TSCEEEEETTEEEEESC
T ss_pred cceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-------CCCEEEEECCCceEEEC
Confidence 35689999999886 55566643467899877765421111111234677777665 44578888877658999
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
..++++.
T Consensus 566 ~~~~~~~ 572 (781)
T 3v9f_A 566 ARNFDYQ 572 (781)
T ss_dssp TTTCCCE
T ss_pred CCCCcEE
Confidence 8877643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.14 Score=51.73 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=92.9
Q ss_pred eCCCCCEEEEEECCC--cEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDG--AINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--tVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+. +.++.+.+.+| +|+.+|+ +++.... ..+. .+ ..--.+++.. +++......++.+.+||..+.
T Consensus 28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~--------~~-~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 28 YLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEVP--------PP-YFGAGIVAWR-DRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp EET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EECC--------TT-CCEEEEEEET-TEEEEEESSSSEEEEEETTTT
T ss_pred EEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeCC--------CC-cceeEEEEeC-CEEEEEEeeCCEEEEEECCcC
Confidence 554 66777777765 9999999 4444211 1111 01 1112233332 344555667889999998743
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC---C
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS---S 392 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~---~ 392 (826)
.. +......+.=..| ++++..|.++..++.|.++|..+.+++.+..... +. .
T Consensus 96 ~~----------------------~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~ 150 (243)
T 3mbr_X 96 TP----------------------RARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLD 150 (243)
T ss_dssp EE----------------------EEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECC
T ss_pred cE----------------------EEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccc
Confidence 22 2222222222233 3567777777789999999999998886555422 12 2
Q ss_pred CeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.+..+.|.. +. |++.. .+..|.++|..+|+.+..+..
T Consensus 151 ~lNeLe~~~-------G~-lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 151 NLNELEWVN-------GE-LLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp CEEEEEEET-------TE-EEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred cceeeEEeC-------CE-EEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 334455542 54 55555 577999999999999988753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.039 Score=62.79 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=118.3
Q ss_pred eeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--e-C-CCCCEEEEEE------------------CCCcE
Q 003360 201 ITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--H-S-KVKNLFITGH------------------SDGAI 255 (826)
Q Consensus 201 s~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~-s-~~~~~l~Tgs------------------~DGtV 255 (826)
.+||++++... +..|.+.+...-.... +..+...+... + + |+++++.+++ .++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 55889888865 4456666554433221 11222233333 3 4 8889888885 34678
Q ss_pred EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEeCCCC----
Q 003360 256 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---------------MVRIFKLKYEP---- 316 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---------------~V~iwd~~~~~---- 316 (826)
.++|..... .+.++. ..+ .-..++++|+++++++.+.+. .|.++|+.+..
T Consensus 178 tvID~~t~~--v~~qI~--------Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 178 TAVDADKWE--VAWQVL--------VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEETTTTE--EEEEEE--------ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEECCCCe--EEEEEE--------eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 889985433 223333 111 234577899999999988663 46677664321
Q ss_pred ---CccccceEEEeecC-CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCe------------
Q 003360 317 ---HAIENSFLSFTGSK-KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPT------------ 379 (826)
Q Consensus 317 ---~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~------------ 379 (826)
...-+.+.-+.... .+... +..........++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~----~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLF----TRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSS----EEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CCCeeEECcEEEEeCcccCCcee----EEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 00001122121111 01110 12222234567899999999877665 57899999998653
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+.. .. ........++|++ ++....+.-.|+.|.+||..+
T Consensus 323 v~~--~v--~vG~gP~h~aF~~------dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 323 VVA--EP--ELGLGPLHTAFDG------RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEE--CC--BCCSCEEEEEECT------TSEEEEEETTTTEEEEEEHHH
T ss_pred eEE--Ec--CCCCCcceEEECC------CCeEEEEEecCCcEEEEEhhH
Confidence 221 11 2345678899999 584334555789999999886
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=1.4 Score=50.63 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.3
Q ss_pred cCCC---EEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 356 RNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 356 ~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+|+ .++.++.+|.++++|..+++++.....
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 4673 577899999999999999999876554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.7 Score=46.97 Aligned_cols=217 Identities=9% Similarity=0.087 Sum_probs=122.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccC--Cccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLK--DGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~--g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
++.....+..++|.|++..|++.. ++.|...+........+ +.. +.... +.+++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i--~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI--PLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE--ECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE--ecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 456667899999999988888766 44444445443222222 111 11222 55777776765567888888873
Q ss_pred -CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 -CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 -~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
......+...... .. ..........|+|+|.+..|.++.+.....||.+..-.. ...+.-+. .+. +
T Consensus 100 ~~~~i~~~~~~~~~-~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~--~~~l~i~~-~~~--------~ 166 (255)
T 3qqz_A 100 PNSEVKILKKIKIP-LQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS--SNELHISK-DKA--------L 166 (255)
T ss_dssp TTCCEEEEEEEECC-CS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC--SSCCEEEE-CHH--------H
T ss_pred CCCeeeeeeeeccc-cc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc--CCceeeec-chh--------h
Confidence 2221111212110 00 012335678999999998888888777778888762111 00111000 000 0
Q ss_pred EEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCC------CCCeeEEEEeecccCCCCCcEEE
Q 003360 341 KVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI------SSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~------~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
.....-..+.+|+++|.. .+++....+..+.++|.. +.++....+..+. -...-.|+|.+ +++ |+
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~------~G~-ly 238 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA------SGN-IY 238 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT------TCC-EE
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC------CCC-EE
Confidence 000012357899999865 455666677889999976 4466545544322 13567788988 465 66
Q ss_pred EEECCCcEEEEECC
Q 003360 414 IATKDSSVLVLDSD 427 (826)
Q Consensus 414 sgs~Dg~V~iwd~~ 427 (826)
+.+.-..++.+...
T Consensus 239 IvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 239 IVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTEEEEEEC-
T ss_pred EEcCCceEEEEEec
Confidence 66776777777654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.59 Score=53.81 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+|.|..||+.+++++.+..... ++..-.... .+.++++|+.|+.++.||.++|+.+-.+..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCC----CCcccceEe------CCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 6889999999999997665321 111111111 267888999999999999999999988754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.27 Score=49.50 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=105.4
Q ss_pred CCEEEEEEeeCCCeEEEec-C--CcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA-D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
.....+.|+. +....+.+ + ..++.++......... ......... ... .+++++..-.++.+.+||.....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~-- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT-- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE--
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc--
Confidence 4566788775 44444444 3 3788887665444332 111112111 222 34566666788999999994433
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI- 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~- 345 (826)
.+.++.+. .+ ...+++++..|+++..++.|.++|..+..... . +.....
T Consensus 97 ~~~ti~~~------~~-----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~-----~--------------I~V~~~g 146 (243)
T 3mbr_X 97 PRARFRYP------GE-----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG-----S--------------IKVTAGG 146 (243)
T ss_dssp EEEEEECS------SC-----CCEEEECSSCEEEECSSSEEEEECTTTCCEEE-----E--------------EECEETT
T ss_pred EEEEEeCC------CC-----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE-----E--------------EEEccCC
Confidence 23334422 11 12334677777777778899999987443211 0 111111
Q ss_pred --cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCCCCCcEEE
Q 003360 346 --NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 346 --~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
-..++-|.+. +|...|....+..|.++|..+++++-...+.. ....-...|+|++ ++..|+
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~------~~~~lf 219 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA------EHDRLF 219 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET------TTTEEE
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC------CCCEEE
Confidence 1235666765 66555444467899999999999986655431 1123457799998 466666
Q ss_pred EEEC
Q 003360 414 IATK 417 (826)
Q Consensus 414 sgs~ 417 (826)
+.+.
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 6553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=2.3 Score=50.85 Aligned_cols=242 Identities=11% Similarity=0.173 Sum_probs=135.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+.+++..|-|..|+...-. +.... . . +. . -......|.++....++. ++.|. ++-+..|+.....
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~--~~~~~-~---~-~~--~--~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNR--FKNIR-N---I-PY--K--NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGS--SEEEC-C---C-TT--S--SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred cCEEEEECCCCeEEeCCCccc--ceEEc-C---C-CC--C--CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 346777777788888765410 00000 0 0 00 0 012345688887777665 56666 5567777655444
Q ss_pred eeecccc--------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 225 LLDFETK--------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 225 ~~~~~~~--------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
+..+... ....|.+ ..+++++|..|+.++-|.+||........ +... .. ......|.++...++
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~---~~~~-~~--~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN---FNQR-NS--QLVNENVYAILPDGE 462 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE---ECTT-TS--CCSCSCEEEEEECSS
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE---eecC-CC--CcCCCeeEEEEECCC
Confidence 4333111 1244556 45677756778887789999985544322 1110 00 133468999999888
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
+.+.+.. .+| |.+|+..++.. ..+....+.. ......|.++...++|. +-+|+.+| |..||
T Consensus 463 g~lwigt-~~G-l~~~~~~~~~~------~~~~~~~~~~---------~~~~~~i~~i~~d~~g~-lWigt~~G-l~~~~ 523 (795)
T 4a2l_A 463 GNLWLGT-LSA-LVRFNPEQRSF------TTIEKEKDGT---------PVVSKQITTLFRDSHKR-LWIGGEEG-LSVFK 523 (795)
T ss_dssp SCEEEEE-SSC-EEEEETTTTEE------EECCBCTTCC---------BCCCCCEEEEEECTTCC-EEEEESSC-EEEEE
T ss_pred CCEEEEe-cCc-eeEEeCCCCeE------EEcccccccc---------ccCCceEEEEEECCCCC-EEEEeCCc-eEEEe
Confidence 8765544 454 77788764321 1000000000 01135689999999987 44455554 78899
Q ss_pred cCCCeeEEee--ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 375 TEGPTVLYQK--HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 375 ~~~~~~l~~~--~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
..+....+.. .........|.++.... ...|+.|+.. -|..||..++++.
T Consensus 524 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-------~g~lWigT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 524 QEGLDIQKASILPVSNVTKLFTNCIYEAS-------NGIIWVGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp EETTEEEECCCSCSCGGGGSCEEEEEECT-------TSCEEEEESS-CEEEEETTTTEEE
T ss_pred CCCCeEEEecCCCCCCCCCCeeEEEEECC-------CCCEEEEeCC-CceeECCCCCcEE
Confidence 8877652110 00112334677777765 3457777776 5889998876544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.89 Score=46.03 Aligned_cols=173 Identities=11% Similarity=-0.025 Sum_probs=95.5
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEEC--CCcEEEEeCCCCce
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHS--DGAINFWDVSCPLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~--DGtVriWD~s~~~~ 265 (826)
.....+++.+++..++.+. .+.|.+++........+.......... ++++ +.++++... .+.|..++..+...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 4567889998776666544 566777654432222221110011122 7885 455555543 47888888855442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
..+.. ........++++|++..|.++. ..+.|.++++..... .....
T Consensus 159 ~~~~~----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----------------------~~~~~ 206 (267)
T 1npe_A 159 RILAQ----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------------------RKVLE 206 (267)
T ss_dssp EEEEC----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----------------------EEEEE
T ss_pred EEEEE----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----------------------EEEec
Confidence 11110 1113578999999877665554 457899988862110 00111
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.......|+.. +..|.++. ..+.|.++|..+++.+..... +.......+++.|
T Consensus 207 ~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~ 260 (267)
T 1npe_A 207 GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIAL 260 (267)
T ss_dssp CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEEC
T ss_pred CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecC
Confidence 11224566654 34455544 568999999999988744432 2222355566666
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.41 Score=56.04 Aligned_cols=116 Identities=9% Similarity=0.090 Sum_probs=70.7
Q ss_pred eCC-CCCEEEEEECCC-----------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CC
Q 003360 239 HSK-VKNLFITGHSDG-----------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SG 305 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DG-----------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg 305 (826)
+.+ ++++++.|+.+. .+.+||........+..+. ..+.....++++.+++.+++.|+. +.
T Consensus 193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-------~~~~~~~~~~~~~~~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-------TKHDMFCPGISMDGNGQIVVTGGNDAK 265 (656)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-------CSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-------CCCCCccccccCCCCCCEEEeCCCCCC
Confidence 555 888999887653 5889998555532222221 112223345777899999999985 45
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC-----CeEEEEecCCCe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ-----GYVYLLDTEGPT 379 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d-----G~V~vwD~~~~~ 379 (826)
.+.+||..++... . +........-.+++..++|+++++|+ .+ ..+.+||..+.+
T Consensus 266 ~v~~yd~~t~~W~------~--------------~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 266 KTSLYDSSSDSWI------P--------------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEEEGGGTEEE------E--------------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceEEecCcCCcee------E--------------CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 8999998754221 0 00000011123345567888999988 44 468999998876
Q ss_pred eE
Q 003360 380 VL 381 (826)
Q Consensus 380 ~l 381 (826)
-.
T Consensus 326 W~ 327 (656)
T 1k3i_A 326 WT 327 (656)
T ss_dssp EE
T ss_pred ce
Confidence 44
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.83 Score=51.99 Aligned_cols=132 Identities=9% Similarity=-0.001 Sum_probs=77.5
Q ss_pred CeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
...++.++||++++++++ .+.+|.+||+.+........+ ... ... +...........++|+++|...++
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-----~~~-~~v----~~~v~vG~gP~h~aF~~dG~aY~t 347 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-----DPR-SAV----VAEPELGLGPLHTAFDGRGNAYTS 347 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----CGG-GGE----EECCBCCSCEEEEEECTTSEEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-----Ccc-cce----EEEcCCCCCcceEEECCCCeEEEE
Confidence 456899999999877665 578999999984311000000 000 000 222233445788999999954556
Q ss_pred EecCCeEEEEecCC----------CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC---CCc----------
Q 003360 364 GSDQGYVYLLDTEG----------PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK---DSS---------- 420 (826)
Q Consensus 364 Gs~dG~V~vwD~~~----------~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~---Dg~---------- 420 (826)
...|++|.+||+.. ..++.+... |- .+-...++.......|+.+|+++.. |..
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV---~y-qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~ 423 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV---HY-QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEN 423 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC---SS-CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEE
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeec---cc-ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCc
Confidence 67899999999976 445533332 11 1111222222223347999998865 332
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
-.++|+.+++
T Consensus 424 ~ql~dis~~~ 433 (595)
T 1fwx_A 424 DQLIDISGDK 433 (595)
T ss_dssp EEEEECSSSS
T ss_pred ceEEEcCCCc
Confidence 1788887665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.35 E-value=1.5 Score=47.36 Aligned_cols=203 Identities=7% Similarity=-0.077 Sum_probs=115.5
Q ss_pred CCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..++|.+....|+.+ . .+.|..++........+.......... +.+ .++++++-...+.|.+.++.+.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 346788898765555544 3 667776754433322220100111111 554 56677777778888888885544211
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+. ...-.....|+++|.+..|...... +.|..+++..... . ......
T Consensus 196 ---l~-------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------~-----~~~~~~ 244 (386)
T 3v65_B 196 ---LL-------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------R-----IIADTH 244 (386)
T ss_dssp ---EE-------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------E-----EEECSS
T ss_pred ---ee-------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----------------E-----EEEECC
Confidence 11 0112467899999987776666543 4566666542211 0 000011
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
-.....|+|++++..|..+. ..+.|..+|+.......... ........+++. ++.++++-...+.|..+
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-------~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-------EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-------TTEEEEEETTTTEEEEE
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-------CCEEEEeeCCCCeEEEE
Confidence 22368899998766666554 56789999986543221111 122345566663 25666666677889999
Q ss_pred ECCCCceEEeee
Q 003360 425 DSDNGNMLSTNL 436 (826)
Q Consensus 425 d~~tg~~i~~~~ 436 (826)
+..+|+.+..+.
T Consensus 315 ~~~~G~~~~~i~ 326 (386)
T 3v65_B 315 NKFTGKNQEIIR 326 (386)
T ss_dssp ETTTCCSCEEEE
T ss_pred ECCCCcceEEEc
Confidence 977788776653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.22 E-value=1.5 Score=46.09 Aligned_cols=200 Identities=12% Similarity=-0.001 Sum_probs=114.2
Q ss_pred CEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCce--eecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 194 SITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
.+..+.|.+....++ +-. .+.|..+....... .....+. ..... +.+ .++++++-...+.|.+++..+....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 456788888655444 444 66676664433211 1111111 11112 553 5667788778889999998655422
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +. .........|++.|.+..|..+.. .+.|..+++..... .. +. ..
T Consensus 115 ~---l~-------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------~~----~~-~~ 163 (318)
T 3sov_A 115 V---LF-------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----------------FI----II-NS 163 (318)
T ss_dssp E---EE-------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----------------EE----EE-CS
T ss_pred E---EE-------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----------------EE----EE-EC
Confidence 2 11 011246689999998777776653 45666666542111 00 10 01
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.-.....|++++++..|..+. ..+.|..+|+.+....... .........+++.. +.++++-...+.|..
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~~~~P~glav~~-------~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFE-------DILYWTDWSTHSILA 233 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSCCSCEEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCCCCCceEEEEeC-------CEEEEEecCCCeEEE
Confidence 112358899999776666654 5678999998654322111 12233445566543 566677667789999
Q ss_pred EECCCCceEEee
Q 003360 424 LDSDNGNMLSTN 435 (826)
Q Consensus 424 wd~~tg~~i~~~ 435 (826)
++..+|+.+..+
T Consensus 234 ~~~~~G~~~~~i 245 (318)
T 3sov_A 234 CNKYTGEGLREI 245 (318)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCCceEEE
Confidence 999888876654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.17 E-value=3.2 Score=49.34 Aligned_cols=217 Identities=13% Similarity=0.164 Sum_probs=117.0
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccc-------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK-------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~-------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
..|.++....++.. +.+..+-+..|+.....+..+... ....|.+ ..+++. |..|+..+-|.++|....
T Consensus 211 ~~i~~i~~d~~g~l-wigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNI-WIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCE-EEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCE-EEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 46888877666654 445433566666543333333111 1234555 344554 556777566888998544
Q ss_pred ceeeeeeccc----ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 264 LFLLILSLKQ----QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 264 ~~~~i~~l~~----~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.......... .....-......|.+|...+++. |-+|+.++-|..|+...... ..+...+...
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------~~~~~~~~~~------ 355 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF------HTWSYSPTQM------ 355 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC------EEEC----CC------
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc------eeeccCcccc------
Confidence 4211111000 00001123446899999998876 55577666688888764322 1110000000
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.........|.++...++|. |-+|+.++-|..||..++...............|.++.... ...|++|+.++
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g~lWigt~~~ 427 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-------EGNLWFGTYLG 427 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------TSCEEEEETTE
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------CCCEEEEeccC
Confidence 00011235699999988886 66788666688999876543311110112345677777664 45688899888
Q ss_pred cEEEEECCCCceE
Q 003360 420 SVLVLDSDNGNML 432 (826)
Q Consensus 420 ~V~iwd~~tg~~i 432 (826)
-|..++..++++.
T Consensus 428 Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 428 NISYYNTRLKKFQ 440 (781)
T ss_dssp EEEEECSSSCEEE
T ss_pred CEEEEcCCCCcEE
Confidence 8999999877654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.38 Score=56.34 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=63.7
Q ss_pred EEEEee-CCCeEEEec-CC-----------cEEEeccCCCc---eeecccccCCccee--eCCCCCEEEEEEC-CCcEEE
Q 003360 197 AMKLIT-GNSFILSSA-DE-----------DYSLLAKSVPP---LLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINF 257 (826)
Q Consensus 197 ~~~fs~-~~~~l~~~~-d~-----------~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVri 257 (826)
.+++.+ +++.++.|+ +. .+.+|+..... +..+..++.....+ +..++++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 777777765 22 35666543322 11221222222212 6688999999984 568999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CC-----CcEEEEEeCCC
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QS-----GMVRIFKLKYE 315 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~d-----g~V~iwd~~~~ 315 (826)
||........+..+. ... .-.++...+++++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~--------~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQ--------VAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCS--------SCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCC--------ccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 998655543321111 111 113455667999999998 44 46889998754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.03 E-value=2.3 Score=46.30 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=130.5
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP- 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~- 223 (826)
.+++.++...|..+|...- . +.. +......+..++|.+....|..+. .+.|..+.....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~----------------~-~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~ 145 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRS----------------E-YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 145 (400)
T ss_dssp CEEEEEETTEEEEECTTSC----------------S-CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred ceeEEeccceeEEEccCCc----------------c-eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC
Confidence 3455566677777766540 0 111 122335678899998666555543 566666643321
Q ss_pred ---ceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 ---PLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ---~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
............... +.+ .++++++-...+.|.+.|+.+.....+.. ........|++.|.+..
T Consensus 146 ~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~----------~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 146 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------ENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp --CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE----------CSSCCEEEEEEETTTTE
T ss_pred CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe----------CCCCCcceEEEecccCe
Confidence 111110101111222 554 56778887888899999986655322111 11235789999997777
Q ss_pred EEEEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 003360 298 LVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLD 374 (826)
Q Consensus 298 Lasgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD 374 (826)
|..... .+.|...++..... .. + ....-.....|++++++..|..+. ..+.|..+|
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~----------------~~----~-~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDI----------------YS----L-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSC----------------EE----E-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCcc----------------EE----E-EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence 766653 35676666652211 00 1 001113478899998877777665 467899999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.+......... ...-.....++.. .+.++++-...+.|..+|..+|+.+..+
T Consensus 275 ~dG~~~~~~~~~-~~~l~~P~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 275 VNGGNRKTILED-EKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TTSCCCEEEEEC-SSTTSSEEEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCCccEEEEeC-CCCCCCCEEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 876443211111 1112234455553 2566677777788999998888877665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=1.9 Score=45.17 Aligned_cols=204 Identities=9% Similarity=-0.029 Sum_probs=115.1
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCC----CceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSV----PPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.....+.|.+.+..++.+. .+.|..++... ..........-..... +.+ .++++++-..++.|.+.|..+.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4567888988765555543 56676664432 1111110000011122 554 5667777778889999998665
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
....+.. ........++++|.+..|..+... +.|..+++... .. ..
T Consensus 110 ~~~~~~~----------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~------------------~~----~~ 157 (316)
T 1ijq_A 110 KRKTLFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV------------------DI----YS 157 (316)
T ss_dssp SEEEEEE----------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------------CE----EE
T ss_pred ceEEEEE----------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC------------------Ce----EE
Confidence 4222111 112367899999977766665543 56666665421 10 00
Q ss_pred Ee-eccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 342 VM-KINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 342 ~~-~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.. ..-.....|++++++..|..+. ..+.|..+|+.+......... .........+++.. +.++++-...+
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~-~~~~~~P~giav~~-------~~ly~~d~~~~ 229 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIINE 229 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-------TEEEEEETTTT
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec-CCccCCcEEEEEEC-------CEEEEEECCCC
Confidence 11 1123468899998877776655 567899999975432211111 11123345666632 56666666778
Q ss_pred cEEEEECCCCceEEeee
Q 003360 420 SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~ 436 (826)
.|..++..+|+.+..+.
T Consensus 230 ~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTCCCCEEEE
T ss_pred eEEEEeCCCCcceEEEe
Confidence 99999988888766653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.91 E-value=1.9 Score=44.67 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=56.8
Q ss_pred eeCCCeEEEec--CCcEEEeccCC-CceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccc
Q 003360 201 ITGNSFILSSA--DEDYSLLAKSV-PPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 201 s~~~~~l~~~~--d~~i~~w~~~~-~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~ 274 (826)
++++..++.+. .+.|..++... ..+.....-.....+. +.++|+++++....+.|.++|..+... .+..+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~-~~~~~~-- 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT-IIAQAE-- 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE-EEECGG--
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEE-EEeecc--
Confidence 78888776654 56777775432 1111000000111122 788999988888889999999865431 111111
Q ss_pred cccccccCCCCeEEEEEe---CCCCEEEEEeCCC
Q 003360 275 SEKDFSLSGIPLTALYYD---GTSRVLVSGDQSG 305 (826)
Q Consensus 275 ~~~~~~~h~~~V~~l~fs---p~~~~Lasgs~dg 305 (826)
......++++|. |+++.|.+++..+
T Consensus 252 ------~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 ------QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ------GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------cccCCceEEEEecccCCCCEEEEECCCC
Confidence 122468999998 8888777766544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.77 E-value=2.6 Score=44.86 Aligned_cols=201 Identities=8% Similarity=-0.059 Sum_probs=115.5
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-ccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
..+..++|.+....++.+. .+.|..++........+ ..+.. .... +.+ .++++++-...+.|.+.+..+....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3467888987666555543 66676665443222222 11111 1112 554 5667788778889999998655421
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM- 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~- 343 (826)
. +. .........|+++|.+..|..... . +.|..+++..... ....
T Consensus 152 ~---l~-------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------~~~~~ 199 (349)
T 3v64_C 152 V---LL-------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------RIIAD 199 (349)
T ss_dssp E---EE-------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------EESCC
T ss_pred E---EE-------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----------------------EEEEE
Confidence 1 11 011245689999997766665544 3 5666666653211 0000
Q ss_pred eccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..-.....|++++++..|..+. ..+.|..+|+.+........ ........+++. ++.+.++-...+.|.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-------~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-------EDSLYWTDWHTKSIN 269 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-------TTEEEEEETTTTEEE
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-------CCEEEEecCCCCeEE
Confidence 0122368899998776666654 46789999987543221111 122345566663 255666666678899
Q ss_pred EEECCCCceEEeee
Q 003360 423 VLDSDNGNMLSTNL 436 (826)
Q Consensus 423 iwd~~tg~~i~~~~ 436 (826)
.++..+|+.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 99977787766653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.12 Score=61.59 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=84.7
Q ss_pred eC-CCCCEEEEEEC-CC----cEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----Cc
Q 003360 239 HS-KVKNLFITGHS-DG----AINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GM 306 (826)
Q Consensus 239 ~s-~~~~~l~Tgs~-DG----tVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~ 306 (826)
|+ |+|++|+-+.. +| +|+++|+.+. .. +.. .+. .....++|+||++.|+....+ ..
T Consensus 181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~----~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IAD----KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCC----CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCc----ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 89 99998775443 33 4999999544 31 110 000 113467899999887777665 24
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---CCeEEEEecCCC--ee-
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---QGYVYLLDTEGP--TV- 380 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---dG~V~vwD~~~~--~~- 380 (826)
|.++++.++.... .. +-..........+.|||||++|+..+. ...|.++|+.++ ..
T Consensus 249 v~~~~lgt~~~~~--------------~l----v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 249 VWRHVMGKLQSED--------------VC----LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp EEEEETTSCGGGC--------------EE----EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred EEEEECCCCchhc--------------EE----EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 6666665332110 00 111112234577899999999887663 346888998775 22
Q ss_pred -EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-C----CcEEEEECCC
Q 003360 381 -LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-D----SSVLVLDSDN 428 (826)
Q Consensus 381 -l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-D----g~V~iwd~~t 428 (826)
. .+.........++.|.. +..|+..+. + ..|..+|..+
T Consensus 311 ~~---~l~~~~~~~~~s~~~~~-------g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 311 LE---IVRPREKGVRYDVQMHG-------TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EE---ESSCCCTTCCEEEEEET-------TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eE---EeecCCCCceEEEeeee-------CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 1 11123344555555443 555554443 3 2677777764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.81 Score=54.45 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=64.3
Q ss_pred CEEEEEEe-eCCCeEEEec--CC----cEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECC-----CcEEEE
Q 003360 194 SITAMKLI-TGNSFILSSA--DE----DYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSD-----GAINFW 258 (826)
Q Consensus 194 ~Vt~~~fs-~~~~~l~~~~--d~----~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D-----GtVriW 258 (826)
.+...+|| |||+.++.+. ++ .|.+++.... ..... ...+.... |+|+++.|+....| ..|.+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57788999 9999988654 22 2666655443 32111 11111222 99999877776665 257777
Q ss_pred eCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCC
Q 003360 259 DVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKY 314 (826)
Q Consensus 259 D~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~ 314 (826)
++.+... .+++.- ........+.|+||+++|+..+. ...|.++|+.+
T Consensus 253 ~lgt~~~~~~lv~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEE---------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp ETTSCGGGCEEEEEC---------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ECCCCchhcEEEEec---------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 7744321 111111 11234567899999998886653 33577777764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.20 E-value=3.7 Score=43.07 Aligned_cols=197 Identities=10% Similarity=0.032 Sum_probs=95.9
Q ss_pred CCCEEEEEEeeCCCeEEEecCCcEEEe-ccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcE-EEEeCCCCcee
Q 003360 192 DSSITAMKLITGNSFILSSADEDYSLL-AKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAI-NFWDVSCPLFL 266 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~~i~~w-~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtV-riWD~s~~~~~ 266 (826)
...+..+.|.+ +...+.+..+.+..- +....+.... ...+.+.+.. +.+++.+++++ .+|.| +-+| .+....
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D-gG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD-SGKNWQ 155 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS-TTSSEE
T ss_pred CccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC-CCCCCE
Confidence 34577888865 444343436543332 2222232211 1122334444 44556666555 45654 3233 233332
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
.+ . ......+..+.+.|++.+++++...+..+-+|-. +.... .......
T Consensus 156 ~~---~-------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g------------------G~tW~---~~~~~~~ 204 (327)
T 2xbg_A 156 AL---V-------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG------------------QTAWE---PHNRTTS 204 (327)
T ss_dssp EE---E-------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT------------------CSSCE---EEECCSS
T ss_pred Ee---e-------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC------------------CCcee---ECCCCCC
Confidence 21 1 1223478899999998888777544333322210 11100 1111234
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc-cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
..+..+.+.+++.++ +++.+|.+++.+...+..-...... ......+.++.|.+ ++. +++++.++.| ++.
T Consensus 205 ~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~------~~~-~~~~g~~g~i-~~S 275 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT------PNE-VWLAGGAGAL-LCS 275 (327)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS------SSC-EEEEESTTCE-EEE
T ss_pred CccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC------CCE-EEEEeCCCeE-EEe
Confidence 568889999998755 5556888777643223221111111 01223577888876 244 4555567766 444
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
...|+.
T Consensus 276 ~DgG~t 281 (327)
T 2xbg_A 276 QDGGQT 281 (327)
T ss_dssp SSTTSS
T ss_pred CCCCcc
Confidence 454543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.09 E-value=3.7 Score=42.45 Aligned_cols=195 Identities=9% Similarity=0.013 Sum_probs=101.9
Q ss_pred CCEEEEEEeeCCCeEEEec--CC-cEEEeccCCCceeec-ccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 193 SSITAMKLITGNSFILSSA--DE-DYSLLAKSVPPLLDF-ETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~-~i~~w~~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.....+++.++++.+++.. ++ .+..++.....+..+ ..+. ..... ..+.+.++++-..+|.|.++|......
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 3578889999998665543 23 233333222222222 1111 11111 344555666666688888888754321
Q ss_pred eeeeeccccc-ccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCC-CCccccceEEEeecCCCCeEEEEEEEE
Q 003360 266 LLILSLKQQS-EKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYE-PHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 266 ~~i~~l~~~~-~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ....... .......-.....| +|+++.|.++. ..+.|..|++... ... .... ...
T Consensus 151 ~v-~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~-------------~~~~----~~~ 210 (306)
T 2p4o_A 151 SI-WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG-------------EPEI----FVE 210 (306)
T ss_dssp EE-EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC-------------CCEE----EEE
T ss_pred eE-EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC-------------ccEE----Eec
Confidence 11 1000000 00000011234555 78887666554 5678999998741 110 0000 100
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe---ecccCCCCCcEEEEEECCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE---TCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~---~~~~~~~d~~~l~sgs~Dg 419 (826)
......|+++++|.+.++....+.|.++|.. ++........ .....+++++|. + |+..|++++..+
T Consensus 211 ---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~------d~~~LyVt~~~~ 279 (306)
T 2p4o_A 211 ---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEG------DCTAIYVVTNGG 279 (306)
T ss_dssp ---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTT------TTTEEEEEECTT
T ss_pred ---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccC------CCCEEEEECCCC
Confidence 1235668999999876666678899999985 5543212221 122457888887 5 567777776544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=2.6 Score=48.41 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=25.8
Q ss_pred cCCC---EEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 356 RNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 356 ~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+|+ .|+.++.+|.++++|..+++++.....
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 4664 688899999999999999999976554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=9.4 Score=45.37 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=113.1
Q ss_pred CCCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCC----ceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 192 DSSITAMKLITGNSFILSS-A-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
...+..++|.+....|+.+ . .+.|..+..... ............... +.+. ++++++-...+.|.+.++.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 3456788888855555443 3 566655543221 111110101111122 5444 46888888889999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.....+.. ........|++.|....|...... +.|...++..... .
T Consensus 503 ~~~~~l~~----------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----------------------~ 550 (791)
T 3m0c_C 503 VKRKTLFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------------Y 550 (791)
T ss_dssp SSEEEEEE----------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----------------------E
T ss_pred CeEEEEEe----------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----------------------E
Confidence 55322111 112357899999987777766543 5666666652211 1
Q ss_pred EEee-ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 341 KVMK-INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 341 ~~~~-~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.+.. .-.....|++++.+.+|..+. ..+.|..+|+.+......... ...-.....|++.. +.+.++-...
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~-------~~lYwtD~~~ 622 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIIN 622 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-------TEEEEEETTT
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeC-------CEEEEEECCC
Confidence 1111 123578899998777776664 456899999866543321211 11112234455432 4455555566
Q ss_pred CcEEEEECCCCceEEee
Q 003360 419 SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~ 435 (826)
+.|...|..+|+.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 78999998888766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.24 Score=58.50 Aligned_cols=202 Identities=11% Similarity=-0.010 Sum_probs=107.0
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCC----Cceeec-ccc--cCCcceeeC-CCCCEEEEEECCCcEEEEeCCCC
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSV----PPLLDF-ETK--LKDGSQSHS-KVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~~~~~-~~~--h~g~V~~~s-~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+..++|.+....|+.+. .+.|..++... .....+ ..+ ...++ ++. ..++++++-...+.|.++++.+.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl-avD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL-AVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE-ECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE-EEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345677888766666554 55666654332 111111 000 01111 144 34567777677889999998655
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
....+ +. ........|++.|.+..|+.+... +.|..+++..... . ..
T Consensus 486 ~~~~l--~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----------------~-----~l 534 (699)
T 1n7d_A 486 KRKTL--FR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------Y-----SL 534 (699)
T ss_dssp CEEEE--CC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----------------C-----EE
T ss_pred ceEEE--Ee--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----------------e-----EE
Confidence 42221 11 011245678889876655554432 5666655542111 0 00
Q ss_pred EeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
....-.....|+|++++.+|..+ +..+.|.++|+.+......... .........|++.. +.++++....+.
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~~~P~glavd~-------~~lywtd~~~~~ 606 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIINEA 606 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC-SSSCSSCCCCEEET-------TEEEEECSTTTC
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec-CCcCCCceEeEEEC-------CEEEEEeCCCCe
Confidence 00011235679999876655554 4567899999865432211111 01112223344432 455666666789
Q ss_pred EEEEECCCCceEEee
Q 003360 421 VLVLDSDNGNMLSTN 435 (826)
Q Consensus 421 V~iwd~~tg~~i~~~ 435 (826)
|..++..+|+.+..+
T Consensus 607 V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 607 IFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEEETTTEEEEECC
T ss_pred EEEEEccCCCceEEe
Confidence 999999888877665
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=94.60 E-value=4.7 Score=42.72 Aligned_cols=163 Identities=12% Similarity=0.222 Sum_probs=98.9
Q ss_pred CCcEEEEeC--CCCceeeeeecccccccccccCC-CCeEEEEE--eCCCC--EEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 252 DGAINFWDV--SCPLFLLILSLKQQSEKDFSLSG-IPLTALYY--DGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 252 DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~f--sp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+++|++|++ ....+ ..+... ...+ ... ..+..+++ +|.+. ++.+...+|.+..|++....
T Consensus 98 ~n~l~vf~iDp~~~~l---~~i~~~-~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-------- 164 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTL---QSMTDP-DHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-------- 164 (355)
T ss_dssp CCEEEEEEECTTTCCE---EECSCT-TSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT--------
T ss_pred CCeEEEEEECCCCCce---eecccc-ccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC--------
Confidence 589999966 33332 222110 0000 011 45566777 77543 68888899999999996321
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-----CCeeEEeeecccCCCCCeeEEEE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-----GPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-----~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
++. ..-.-++.....+.+-.+...+...+|.++-++.-|..+|.. +++++.... .......+..|..
T Consensus 165 ------~g~-~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai 236 (355)
T 3amr_A 165 ------NGY-ISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTI 236 (355)
T ss_dssp ------TSC-EEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEE
T ss_pred ------CCc-ccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEE
Confidence 110 000115555667789999999988899999999777666754 344552221 1122335777877
Q ss_pred eecccCCCCCc-EEEEEE-CCCcEEEEECC-CCceEEeeeccC
Q 003360 400 ETCSLQGFEKN-FLVIAT-KDSSVLVLDSD-NGNMLSTNLIHP 439 (826)
Q Consensus 400 ~~~~~~~~d~~-~l~sgs-~Dg~V~iwd~~-tg~~i~~~~~~~ 439 (826)
.+. .++. +|++.+ .+.++.+||.. +.+++..|.+..
T Consensus 237 ~~~----~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 237 YYA----ADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEC----GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred Eec----CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 542 0233 677666 57799999997 778888875443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=10 Score=45.14 Aligned_cols=151 Identities=8% Similarity=-0.074 Sum_probs=87.6
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~ 314 (826)
+++ .+.++++-...+.|+.+++.+... .....+. ........|++.+.++.|+.+ ...+.|.+.++..
T Consensus 431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 655 456777777778888888854210 0000011 112356789999887655554 4567888888763
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISS 392 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~ 392 (826)
... . ......-.....|++.|.+.+|..... .+.|.+.++.+....... ...-.
T Consensus 503 ~~~-----------------~----~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---~~~l~ 558 (791)
T 3m0c_C 503 VKR-----------------K----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQ 558 (791)
T ss_dssp SSE-----------------E----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---CSSCS
T ss_pred CeE-----------------E----EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---eCCCC
Confidence 211 0 111111234789999998667766653 268999998655433111 12234
Q ss_pred CeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
....|++.+. ...|+.+ .....|..+++.
T Consensus 559 ~P~GLavD~~------~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 559 WPNGITLDLL------SGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEEETT------TTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEecC------CCeEEEEeCCCCcEEEEecC
Confidence 6778888863 4444444 456688888886
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.6 Score=50.72 Aligned_cols=157 Identities=10% Similarity=0.070 Sum_probs=89.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc--cCCCEEEEEEeeCCCeEEEecCCcEEEeccC-
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMKLITGNSFILSSADEDYSLLAKS- 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~- 221 (826)
+..+++..+..+|+++..+.+....... . ..+..+.++. ....|..+..+|+|.+|+..++..|.+-..-
T Consensus 23 ~R~~~~~~n~t~i~~a~~n~iR~~~i~~------~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~ 95 (452)
T 3pbp_A 23 PRYIFSSQNGTRIVFIQDNIIRWYNVLT------D-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPW 95 (452)
T ss_dssp CEEEEEETTTTEEEEEETTEEEEEETTT------C-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCT
T ss_pred CcEEEEEcCCCEEEEEECCEEEEEECCC------C-CcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecC
Confidence 3445555566677777666543211110 1 2223344442 2235788999999999999887776664211
Q ss_pred -C--C---------ceeecccc-----cCCccee--eCCC---CCEEEEEECCCcEEEEeCCCCceeeeeeccccc-ccc
Q 003360 222 -V--P---------PLLDFETK-----LKDGSQS--HSKV---KNLFITGHSDGAINFWDVSCPLFLLILSLKQQS-EKD 278 (826)
Q Consensus 222 -~--~---------~~~~~~~~-----h~g~V~~--~s~~---~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~-~~~ 278 (826)
. . ....+..+ ....|.. |||. +..|++-..|++||+||++...-.+. .++... ...
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg 174 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFG 174 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEE
T ss_pred ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccC
Confidence 0 0 01112111 1344555 8885 45899999999999999943222222 333110 111
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEe--CCCcEEE
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGD--QSGMVRI 309 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~i 309 (826)
+......|.+++|.+++-.|.+.+ +.|.|.-
T Consensus 175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 175 LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 222336899999999887777755 7787643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=94.08 E-value=3.1 Score=43.72 Aligned_cols=158 Identities=14% Similarity=0.206 Sum_probs=98.4
Q ss_pred eCCCCCEEEEEE-CCCcEEEEeCCCCceeeeeecccccccccc--cCC-CCeEEEEE---eCCCCEEEEEeC--------
Q 003360 239 HSKVKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQSEKDFS--LSG-IPLTALYY---DGTSRVLVSGDQ-------- 303 (826)
Q Consensus 239 ~s~~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~~~~~~--~h~-~~V~~l~f---sp~~~~Lasgs~-------- 303 (826)
|++.+..+..++ ..|+|..||..+.....+ .+. .+. +.. ..+..|.| .|+++++++...
T Consensus 20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-----~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-----GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-----TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-----CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 666455555555 789999999964432121 121 111 111 24589999 688888876442
Q ss_pred -----CCcEEEEEeC---CCCCccccceEEEeecCCCCeEEEEEEEEee-----------ccCCeEEEEEccCCCEEEEE
Q 003360 304 -----SGMVRIFKLK---YEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----------INGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 304 -----dg~V~iwd~~---~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----------~~~~V~~l~~s~~g~~lasG 364 (826)
+..|..||+. ++... .. +.+.. .......++..++|+..+++
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~-----~~--------------~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPV-----WS--------------VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCS-----EE--------------EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEE-----EE--------------ecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 5678889987 33221 00 11100 01237889999999998989
Q ss_pred ecC-CeEEEEecCCCeeE-Eeeecc-cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 365 SDQ-GYVYLLDTEGPTVL-YQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 365 s~d-G~V~vwD~~~~~~l-~~~~~~-~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.- +.|..+|....... +-.... .......+.|.+.| |+..|++....+.+..+|+.
T Consensus 155 s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET------TTTEEEEESSSSSEEEEECS
T ss_pred CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC------CCCEEEEEcCCCeEEEEcCC
Confidence 988 98888888655332 111110 11223466889988 68888888779999999987
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=93.90 E-value=7.7 Score=41.08 Aligned_cols=149 Identities=9% Similarity=0.178 Sum_probs=87.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC----CC---EEEEEeC---CCcEEEEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT----SR---VLVSGDQ---SGMVRIFK 311 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~----~~---~Lasgs~---dg~V~iwd 311 (826)
...++++....+-+.+||+.++.++. +. ...++.|..-|+ ++ ++++... +++|++|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~---~~----------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHS---YN----------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEE---EC----------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEE---cc----------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 34566666778899999998877433 22 135556665553 21 2333333 57899998
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEE--ccC-CC-EEEEEecCCeEEEEecC-------CCe
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNM--NRN-SQ-HLAVGSDQGYVYLLDTE-------GPT 379 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~--s~~-g~-~lasGs~dG~V~vwD~~-------~~~ 379 (826)
+..... .+..+.... .. + ... ..+..+|+ ++. +. ++++...+|.+..|++. +.+
T Consensus 106 iDp~~~----~l~~i~~~~--~p-----v---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 106 IDGKNG----TLQSMTDPD--HP-----I---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp ECTTTC----CEEECSCTT--SC-----E---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred ECCCCC----ceeeccccc--cC-----c---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 852211 111110000 00 0 001 34566677 664 43 57888889999999983 234
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.++.. .+.+-.+...+ ....|+++-.+.-|..++.+
T Consensus 172 lVR~f~l----gsq~EgcvvDd------~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 172 KVRAFKM----NSQTEGMAADD------EYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEEC----SSCEEEEEEET------TTTEEEEEETTTEEEEEECS
T ss_pred EEEEecC----CCCcceEEEcC------CCCeEEEecccceEEEEeCC
Confidence 4444433 34566677766 47899999999778777855
|
| >4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.0053 Score=59.78 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 782 SKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 782 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
+++.||||||+.|.+||++|++.|+.|-..|+.|-++|
T Consensus 146 ~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~m 183 (189)
T 4b93_A 146 DLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM 183 (189)
T ss_dssp CCBCTTSSBCCCCEETTCC-------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999998887
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.79 E-value=1.6 Score=48.03 Aligned_cols=148 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-C----cEEEEE
Q 003360 239 HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-G----MVRIFK 311 (826)
Q Consensus 239 ~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g----~V~iwd 311 (826)
++| ++.++++ ...+.|+.+|..+..+.. +. ........|+|+++++.|.++... + .+.+++
T Consensus 144 vdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~---~~--------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 144 FDPKNHNHLYLV-GEQHPTRLIDFEKEYVST---VY--------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp EETTEEEEEEEE-EBTEEEEEEETTTTEEEE---EE--------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred ECCCCCCeEEEE-eCCCcEEEEECCCCEEEE---Ee--------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 676 2444444 344889999986655322 11 122467899999999966666542 2 222233
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.. +... .... +. .-.....++++| +|.++++-..++.|..+|..++........ ..
T Consensus 212 ~~-g~~~--------------~~~~---l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~ 268 (430)
T 3tc9_A 212 RE-SGFK--------------VITE---LT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QD 268 (430)
T ss_dssp GG-GTSC--------------SEEE---EE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred CC-Ccee--------------eeee---ec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CC
Confidence 22 1110 0000 11 122356788999 676566666788999999987765211221 12
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
......++|++ ++++|+++ ...+.|..++..
T Consensus 269 ~~~P~gia~~p------dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHP------SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECT------TSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcC------CCCEEEEEECCCCEEEEEeCC
Confidence 24567899998 58855555 456788887765
|
| >2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.016 Score=56.78 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=3.7
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
-+++.||||||+.|.+||++|.+.|+.|-.-|+.|-++|==+
T Consensus 154 i~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 195 (196)
T 2nut_C 154 IEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA 195 (196)
T ss_dssp HHHHC-------------------------------------
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999998877433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.28 E-value=8.3 Score=41.43 Aligned_cols=151 Identities=7% Similarity=-0.061 Sum_probs=87.3
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~ 316 (826)
|++ .+.++++-...+.|..|+..+.....+ +. ........|++.+.+..|... ...+.|.++++....
T Consensus 123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~--------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 123 FHHRRELVFWSDVTLDRILRANLNGSNVEEV--VS--------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCEEEE--EC--------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCCcEEE--Ee--------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 665 556777777788999999865542111 11 011244678888866655544 445667776665221
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-C-CeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-Q-GYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-d-G~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
. . ......-.....|++.|.+..|..... . +.|..+++......... ...-...
T Consensus 193 ~----------------~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~~~~P 248 (386)
T 3v65_B 193 R----------------K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---DTHLFWP 248 (386)
T ss_dssp C----------------E-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---CSSCSCE
T ss_pred e----------------E-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE---ECCCCCe
Confidence 1 0 111111234688999987766665543 3 68888888654332111 1223346
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
..|+|++. ++.+.++-+..+.|..+|...
T Consensus 249 nGlavd~~-----~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 249 NGLTIDYA-----GRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEEEGG-----GTEEEEEETTTTEEEEECTTS
T ss_pred eeEEEeCC-----CCEEEEEECCCCEEEEEeCCC
Confidence 78999873 234444445567899999873
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.13 E-value=10 Score=40.10 Aligned_cols=150 Identities=9% Similarity=-0.039 Sum_probs=88.1
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~ 316 (826)
|++ .+.++++-...+.|..++..+.....+ +. ........|++.+.+..|.. -...+.|.++++....
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~--------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNGSNVEEV--VS--------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE--EC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeccccEEEEEeccCCceEEEecCCCCceEE--Ee--------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 664 455667777788899999855432111 11 01124568899986655544 4456788888876321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC-CeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ-GYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d-G~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
. . ......-.....|+++|.+..|.... .. +.|..+++.+.... .+....-...
T Consensus 150 ~----------------~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~~~~P 205 (349)
T 3v64_C 150 R----------------K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---IIADTHLFWP 205 (349)
T ss_dssp C----------------E-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ESCCSSCSCE
T ss_pred e----------------E-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EEEECCCCCc
Confidence 1 0 11111123468899998666665554 34 78888888654332 1111223356
Q ss_pred eEEEEeecccCCCCCcEEE-EEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~t 428 (826)
..|++++. +..|+ +-+..+.|..++...
T Consensus 206 nGla~d~~------~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 206 NGLTIDYA------GRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEETT------TTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEeCC------CCEEEEEECCCCEEEEEeCCC
Confidence 78999873 44444 445567899999873
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=93.13 E-value=11 Score=40.63 Aligned_cols=153 Identities=8% Similarity=-0.074 Sum_probs=87.3
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCce-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLF-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~ 315 (826)
|++ .+.++++-...+.|+.+++.+... .....+- .........|++.+.++.|... ...+.|.+.++...
T Consensus 119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 665 455667767778898888854210 0000010 1112467889999865555544 45677877776532
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
.. . ......-.....|++.|.+.+|..... .+.|...++.+....... ...-..
T Consensus 192 ~~----------------~-----~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~---~~~l~~ 247 (400)
T 3p5b_L 192 KR----------------K-----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQW 247 (400)
T ss_dssp SE----------------E-----EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE---CSSCSC
T ss_pred ce----------------E-----EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE---ECCCCc
Confidence 11 0 111111234789999997767766653 378889988654332111 122345
Q ss_pred eeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECCC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSDN 428 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~t 428 (826)
...|++++. +..|+.+ +....|..+|...
T Consensus 248 P~glavd~~------~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 248 PNGITLDLL------SGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEEEETT------TTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEeC------CCEEEEEECCCCEEEEEeCCC
Confidence 678999873 5555544 5567899999873
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=12 Score=43.22 Aligned_cols=230 Identities=11% Similarity=0.009 Sum_probs=119.6
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~ 224 (826)
-+++.++...|...|...-. ..+.. +...-.....++|.+.+..+..+. .+.|..+......
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~---------------~~~~~-~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~ 73 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGK---------------ENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 73 (619)
T ss_dssp CCEEEECSSBEEEECCC-------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred ceEEEeccccEEEEeCCCCc---------------ceEEE-EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC
Confidence 35667778888887775410 00111 011123456788888666665544 5566655433221
Q ss_pred --eeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 225 --LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 --~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
......+. ..... +.+ .++++++-...+.|.+.++.+.....+.. ..-.....|++.|....|.
T Consensus 74 ~~~~v~~~~~-~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----------~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 74 SVQNVVVSGL-LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----------QELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp -CEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------SSCSCCCCEEEETTTTEEE
T ss_pred ceEEEEeCCC-CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----------CCCCCCceEEEecCCCeEE
Confidence 11111111 11222 555 56677887888999999996654322110 1113567899999877666
Q ss_pred EEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC
Q 003360 300 SGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE 376 (826)
Q Consensus 300 sgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~ 376 (826)
..... +.|...++..... .. +. ...-.....|++++++..|..+. ..+.|..+|+.
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~----------------~~----l~-~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSR----------------FI----II-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEECSSSCEEEEEETTSCSC----------------EE----EE-CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EeccCCCCEEEEEECCCCce----------------EE----EE-eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 66543 4444444432111 00 10 01123468899998766666554 56789999987
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+....... .+.......|++.. +...++-...+.|...|..+|+....
T Consensus 202 G~~~~~~~---~~~~~~P~gi~~~~-------~~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 202 GTNRQAVV---KGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCEEC------------CCCEEESS-------SEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCccEEEE---eCCCCCceEEEEeC-------CEEEEecCCCCEEEEEECCCCcccEE
Confidence 64332111 11111122344432 44444545677899999988876544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=92.75 E-value=10 Score=39.27 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=86.8
Q ss_pred eCCC-CCEEEEEECCCcEEEEeCCC----CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEe
Q 003360 239 HSKV-KNLFITGHSDGAINFWDVSC----PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKL 312 (826)
Q Consensus 239 ~s~~-~~~l~Tgs~DGtVriWD~s~----~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~ 312 (826)
|++. +.++++-..++.|..+|..+ .....+ +. ..-.....|++.+.++.|..+ ...+.|.++++
T Consensus 37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~--------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--IS--------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEE--EC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--Ee--------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 6664 55777777789999999854 221110 11 111345788999766555544 56778888887
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC--CeEEEEecCCCeeEEeeecccCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
..... . ......-.....+++.|.+..|...... +.|..+++...... .. ....
T Consensus 107 ~g~~~-----------------~----~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~--~~~~ 162 (316)
T 1ijq_A 107 KGVKR-----------------K----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL--VTEN 162 (316)
T ss_dssp TSSSE-----------------E----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EE--ECSS
T ss_pred CCCce-----------------E----EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EE--EECC
Confidence 63211 0 0001112346889999876666655543 68888888543322 11 1122
Q ss_pred CCCeeEEEEeecccCCCCCcEEE-EEECCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~ 427 (826)
-.....+++++ ++..|+ +-+..+.|..+|..
T Consensus 163 ~~~P~gla~d~------~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 163 IQWPNGITLDL------LSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CSCEEEEEEET------TTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEec------cCCEEEEEECCCCeEEEEecC
Confidence 34567888987 355554 44456789999987
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.70 E-value=9.3 Score=38.55 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=100.2
Q ss_pred Cccee--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 234 DGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 234 g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
+.+.. +.|++. ++++...++.|...|.++... ..+.. .+ ....-.|++.+++.++++.-.++.+.++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~---~~i~l------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLI---RTIPL------DF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEE---EEEEC------SS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEE---EEEec------CC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 34444 777655 556677788898899885542 22221 01 1346678888888776766667889999
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEE----eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC------Cee
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV----MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG------PTV 380 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~----~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~------~~~ 380 (826)
++..... +. .+....+ ...+.....|+|+|.++.|.++.+.....||.+.. -++
T Consensus 97 ~v~~~~~-----i~-----------~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i 160 (255)
T 3qqz_A 97 SLTPNSE-----VK-----------ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI 160 (255)
T ss_dssp EECTTCC-----EE-----------EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred EcCCCCe-----ee-----------eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence 8874321 00 0000111 11244579999999998888888766656666642 122
Q ss_pred EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 381 LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 381 l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..... .......+.+++|.|. .+.+++.......+.++|.. |+.+..+
T Consensus 161 ~~~~~~~~~~~~~d~S~l~~dp~-----tg~lliLS~~s~~L~~~d~~-g~~~~~~ 210 (255)
T 3qqz_A 161 SKDKALQRQFTLDDVSGAEFNQQ-----KNTLLVLSHESRALQEVTLV-GEVIGEM 210 (255)
T ss_dssp EECHHHHHTCCSSCCCEEEEETT-----TTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred ecchhhccccccCCceeEEEcCC-----CCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence 110000 0112234678899985 35555555566788888876 7766554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.59 E-value=14 Score=40.37 Aligned_cols=176 Identities=7% Similarity=-0.030 Sum_probs=88.5
Q ss_pred CCCEEEEEEeeCCCeEEEecCC----c-EEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC
Q 003360 192 DSSITAMKLITGNSFILSSADE----D-YSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~----~-i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
......+++.+++..+++...+ . +.................-..-.. +++ ++.++++-..++.|+.+|....
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 3457899999999944443321 1 221221111110000000011111 777 7888888778889999998533
Q ss_pred ce-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeec--CCCCeEEEEE
Q 003360 264 LF-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGS--KKGNSHIIHS 339 (826)
Q Consensus 264 ~~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s--~~~~~~~~~~ 339 (826)
.. ..+.... ....-..|+|+|+++.|.++. ..+.|..+++....... .....+... ..+... +
T Consensus 261 ~~~~~~~~~~---------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~d---g 327 (433)
T 4hw6_A 261 TLTEEEVMMD---------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-AVPYIVCGQHSSPGWVD---G 327 (433)
T ss_dssp CEEEEEEECS---------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-CCCEEEEECTTCCCCBC---E
T ss_pred eEEEEEeccC---------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEEEecCCCCccCC---C
Confidence 32 1111111 112234799999998655554 46788888876321100 011111111 111000 0
Q ss_pred EEEeeccCCeEEEEE---------ccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 340 VKVMKINGSIISLNM---------NRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~---------s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
......-.....+++ .++|.+.++-...+.|+.+|. .+.+.
T Consensus 328 ~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 328 MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 000000123577888 677766666667788999986 45444
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.54 E-value=2 Score=46.70 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=56.9
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCee------------EEeeeccc---CCCCCeeEEEEeecccCCCCCcEE
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV------------LYQKHIAS---DISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~------------l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.|..+..||+|.+||..+.. .|.|..+..+.. .+...+.. ....+|..+.|+|.. ..+.+|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~---~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS---YRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB---GGGCEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEecccc---CCCCeE
Confidence 57889999999999988655 688988863210 11222211 135789999999953 347899
Q ss_pred EEEECCCcEEEEECCC
Q 003360 413 VIATKDSSVLVLDSDN 428 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~t 428 (826)
++-+.|+.|++||+..
T Consensus 143 VVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 143 VVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEETTSCEEEEETTC
T ss_pred EEEecCCEEEEEEccc
Confidence 9999999999999986
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=19 Score=41.50 Aligned_cols=228 Identities=12% Similarity=0.017 Sum_probs=127.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc-cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF-LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~ 223 (826)
.+++.+....|...|...- . ....++. .-..+..++|.+....+..+. ++.|..++....
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~----------------~-~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETN----------------N-NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp CEEEEEETTEEEEEESSCT----------------T-CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEeCCcEEEEECCCC----------------C-cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC
Confidence 3556667788888777541 0 1111221 123567889998766665543 667766644332
Q ss_pred ceeec-ccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 224 PLLDF-ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 224 ~~~~~-~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
..... ..+. +.... +. ..++++++-...+.|.+.++.+.....+. . ..-.....|++.|....|.
T Consensus 70 ~~~~v~~~g~-~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~--~--------~~l~~P~~iavdp~~G~lY 138 (628)
T 4a0p_A 70 ALEHVVEFGL-DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV--W--------KDLDSPRALALDPAEGFMY 138 (628)
T ss_dssp SCEEEECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE--C--------SSCCCEEEEEEETTTTEEE
T ss_pred CcEEEEeCCC-CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE--e--------CCCCCcccEEEccCCCeEE
Confidence 22222 1111 11112 44 34667788778889999998655422211 0 1113568999999776776
Q ss_pred EEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC
Q 003360 300 SGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE 376 (826)
Q Consensus 300 sgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~ 376 (826)
.... .+.|...++..... . .....-.....|+++++++.|..+. ..+.|..+|+.
T Consensus 139 ~tD~g~~~~I~r~~~dG~~~----------------~------~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 139 WTEWGGKPKIDRAAMDGSER----------------T------TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EEECSSSCEEEEEETTSCSC----------------E------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCCEEEEEeCCCCce----------------E------EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 6654 34555555542211 1 1111223478899999877776665 46789999986
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..... .. ........+++.. +.+.++-...+.|...|..+|+....+
T Consensus 197 G~~~~v-~~---~~l~~P~glav~~-------~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 197 GLNREV-IA---DDLPHPFGLTQYQ-------DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp SCSCEE-EE---ECCSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEE-ee---ccCCCceEEEEEC-------CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 643321 11 1122334566543 445555555789999998888755443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.26 E-value=15 Score=40.01 Aligned_cols=113 Identities=4% Similarity=0.056 Sum_probs=66.1
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCc---EEEe-ccCCCce--eec-ccccCCcceeeCC-CCCEEEEEECCCcEEEEeCC
Q 003360 192 DSSITAMKLITGNSFILSSA--DED---YSLL-AKSVPPL--LDF-ETKLKDGSQSHSK-VKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~---i~~w-~~~~~~~--~~~-~~~h~g~V~~~s~-~~~~l~Tgs~DGtVriWD~s 261 (826)
......++|.++++.++.+. .+. ..+| ....... ..+ ...|..++. ++| ++.++++-..++.|..+|..
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~gia-vdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAE-THPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEE-ECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEE-EeCCCCEEEEEECCCCEEEEEECC
Confidence 34577899999999666654 221 2222 2221111 111 111111111 778 78888888888999999996
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCC
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKY 314 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~ 314 (826)
+.....+..+. .......|+|+|++++|.++ ...+.|..|+...
T Consensus 257 ~~~~~~~~~~~---------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 257 TQETTPLFTIQ---------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEECS---------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCcEEEEEEcC---------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 55531211111 11346789999999955554 4567888888763
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=91.81 E-value=5 Score=42.10 Aligned_cols=166 Identities=7% Similarity=0.028 Sum_probs=93.4
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCCCceeeccccc-----CCc--cee--e---CCCCCEEEEEEC----------
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKL-----KDG--SQS--H---SKVKNLFITGHS---------- 251 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h-----~g~--V~~--~---s~~~~~l~Tgs~---------- 251 (826)
-+.+|.+....++.++ .+.|..|+...........+. .+. +.. + .++++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3567877555555555 889999966532222221221 111 122 6 578778776442
Q ss_pred ---CCcEEEEeCC---CCceeeeeeccccccc--ccccCC-CCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCcccc
Q 003360 252 ---DGAINFWDVS---CPLFLLILSLKQQSEK--DFSLSG-IPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 252 ---DGtVriWD~s---~~~~~~i~~l~~~~~~--~~~~h~-~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~ 321 (826)
+..|..+|+. .........|...... ...+.. .....|+..++|+..++++.- +. ||.+..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~p------- 166 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSA------- 166 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECT-------
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeC-------
Confidence 6779999986 3332111122100000 000011 247899999999999988877 66 455542
Q ss_pred ceEEEeecCCCCeEEEEEEEEe--eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVM--KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~--~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
++.....+.+... ......+.|+++|+|..|++....|.+..+|+..+.
T Consensus 167 ---------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv 217 (334)
T 2p9w_A 167 ---------DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY 217 (334)
T ss_dssp ---------TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred ---------CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence 2221110001010 001226789999999988888779999999998543
|
| >3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.027 Score=55.05 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.8
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHH
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEV 815 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~ 815 (826)
-+++.||||||+.|.+||++|++.|..|-.-|+.|
T Consensus 158 I~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~l 192 (199)
T 3kyq_A 158 MESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQ 192 (199)
T ss_dssp GGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999986
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=90.44 E-value=42 Score=41.66 Aligned_cols=124 Identities=18% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCEEEEEe----------CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 295 SRVLVSGD----------QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 295 ~~~Lasgs----------~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
..+|++|. ..|.|.+|++..+ .... +.....+++|++|+--. | +|++|
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-----------------kL~l---v~~~~v~g~v~al~~~~-g-~Lla~ 901 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-----------------KLQT---VAEKEVKGAVYSMVEFN-G-KLLAS 901 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETT-----------------EEEE---EEEEEESSCEEEEEEET-T-EEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECC-----------------EEEE---EEEEEcCCcCEEEeeeC-C-EEEEE
Confidence 46888886 3577888887511 0111 22334488899987553 4 56655
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE--EECCCCceEEeeeccCCCC
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV--LDSDNGNMLSTNLIHPKKP 442 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i--wd~~tg~~i~~~~~~~~~~ 442 (826)
- ..+|++||+...+.+. ... .+-..|..+..... ++++++|..-..|.+ |+...+++... .....+
T Consensus 902 i-g~~l~vy~l~~~~~L~-~~~--~~~~~i~~~~l~~~------~~~I~vgD~~~Sv~~~~y~~~~~~L~~~--a~D~~~ 969 (1158)
T 3ei3_A 902 I-NSTVRLYEWTTEKELR-TEC--NHYNNIMALYLKTK------GDFILVGDLMRSVLLLAYKPMEGNFEEI--ARDFNP 969 (1158)
T ss_dssp E-TTEEEEEEECTTSCEE-EEE--EECCCSCEEEEEEE------TTEEEEEESSBCEEEEEEETTTTEEEEE--EECCSC
T ss_pred c-CCEEEEEECCCCceEE-EEe--eccccEEEEEEecc------CCEEEEEEhhheEEEEEEEcCCCeEEEE--Eeeccc
Confidence 4 4689999998765442 111 11111322222222 678888887766655 45544443322 233334
Q ss_pred CcceEEEEec
Q 003360 443 SRALFMQILN 452 (826)
Q Consensus 443 ~~~lsi~~l~ 452 (826)
..+.+..+++
T Consensus 970 ~~vta~~~ld 979 (1158)
T 3ei3_A 970 NWMSAVEILD 979 (1158)
T ss_dssp BCEEEEEEEE
T ss_pred ccEEEEEEEc
Confidence 4455666665
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=89.22 E-value=40 Score=39.57 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..|.++....++ .|+.+.+.-+..|+.....+..........|.+ ...++ .|..|+.+ -+..+|............
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMALQGD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEEETT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred ceEEEEEEcCCC-cEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEecCC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 467877655554 567766333456654432222110111223444 33344 45556665 467788754443221000
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
. . ......|.++....++.+.+ |+..| |..|+...... ..+...... ......|.+
T Consensus 140 ~----~--~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~------~~~~~~~~~----------~~~~~~i~~ 195 (758)
T 3ott_A 140 R----N--GLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF------EGIPLPVHS----------SQSNLFVNS 195 (758)
T ss_dssp H----H--CCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE------EEECCCCCT----------TCSSCCEEE
T ss_pred C----C--CcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce------EEecCCCcc----------ccccceeEE
Confidence 0 0 11235788888888777655 55555 55666543211 100000000 001234888
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+....++..|-+|+.. -+..+|..+++....... ....|.++.... ...|++|+.+ -+.+++..++.+
T Consensus 196 i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l---~~~~i~~i~~d~-------~g~lWigT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 196 LLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAF---HNNSIKSLALDG-------NGDLLAGTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp EEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEE---EEEEEEEEEECT-------TCCEEEEETT-EEEEECCTTSCC
T ss_pred EEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCC---CCCeEEEEEEcC-------CCCEEEEeCC-ceeEEecCCCcE
Confidence 8888777766667754 477889877664321111 122355555443 5567888854 588898876654
Q ss_pred E
Q 003360 432 L 432 (826)
Q Consensus 432 i 432 (826)
.
T Consensus 264 ~ 264 (758)
T 3ott_A 264 Q 264 (758)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=89.15 E-value=7.2 Score=42.77 Aligned_cols=149 Identities=9% Similarity=0.066 Sum_probs=82.3
Q ss_pred eCCC---CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEe
Q 003360 239 HSKV---KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---MVRIFKL 312 (826)
Q Consensus 239 ~s~~---~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---~V~iwd~ 312 (826)
++++ ++++++-.. +.|+.+|........ +. ........|+|+++++ |.++...+ .-.++.+
T Consensus 146 vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~---~~--------~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 146 FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI---KT--------TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp ECTTTTTCEEEEECBT-SCEEEEETTTTEEEE---EC--------CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred EccccCCCEEEEEeCC-CCEEEEECCCCEEEE---ee--------cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 6763 556655444 899999985444211 11 1224688999999999 55444322 1112222
Q ss_pred CC-CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 313 KY-EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 313 ~~-~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.. .... . ... +. .-.....+++++ +|.+.++-..++.|+.+|..++.+...... .+.
T Consensus 213 ~~~~~~~-------------~-~~~---~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~~~ 271 (433)
T 4hw6_A 213 TRASGFT-------------E-RLS---LC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-MDT 271 (433)
T ss_dssp CGGGTTC-------------C-EEE---EE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-CSC
T ss_pred ECCCCee-------------c-ccc---cc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-cCC
Confidence 21 1000 0 000 11 123356688999 666555555678999999987766211111 111
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
...-..++|++ ++.+|+++. ..+.|+.++..
T Consensus 272 ~~~~~~ia~dp------dG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHP------TGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECT------TSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeC------CCCEEEEEeCCCCEEEEEeCC
Confidence 22234688888 577565554 56788887765
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.49 E-value=11 Score=42.08 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=88.1
Q ss_pred eCCC--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE-------eCCCCEEEEEeCCC----
Q 003360 239 HSKV--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY-------DGTSRVLVSGDQSG---- 305 (826)
Q Consensus 239 ~s~~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f-------sp~~~~Lasgs~dg---- 305 (826)
++|. ++++++-...+.|++.|...+.+..+.... ...-.....|+| ++++..|+++...+
T Consensus 146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-------ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 7773 556666555578899998766643322111 011136889999 99999777776654
Q ss_pred -c--EEEEEeCC-CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecC----
Q 003360 306 -M--VRIFKLKY-EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTE---- 376 (826)
Q Consensus 306 -~--V~iwd~~~-~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~---- 376 (826)
. |.+++... +.... ..++ .. +... .....++++|+ +.++++-..++.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~---------~~~~--~~---v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDD---------RSDI--QL---IAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp GEEEEEEEECCTTSCCST---------TSCE--EE---EEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred cCceEEEEecCCCCceee---------cccc--ee---eccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence 2 44444221 01100 0000 01 2111 13457788994 5555566688899999997
Q ss_pred ---CCee-----------EEe-eecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 377 ---GPTV-----------LYQ-KHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 377 ---~~~~-----------l~~-~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
++.+ .-. ... ........++|++ ++.+|+++ +....|+.++..
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~--~~~~~p~~ia~~p------~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTI--ADPSWEFQIFIHP------TGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEEC--SSSSCCEEEEECT------TSSEEEEEETTTTEEEEEEEE
T ss_pred cccCceeecccccccccccceeEec--CCCCCceEEEEcC------CCCEEEEEeCCCCEEEEEecC
Confidence 5554 101 111 2234567899998 58765555 456678885543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=84.80 E-value=61 Score=37.16 Aligned_cols=204 Identities=9% Similarity=-0.025 Sum_probs=112.3
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccc------cCCccee--eCCC-CCEEEEEECCCcEEEEeCC
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETK------LKDGSQS--HSKV-KNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~------h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s 261 (826)
..+..+.|.+....+..+. .+.|..+.........+... ..+.... +... +++++|-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4577889988766655543 56666664333222111011 0112222 5554 5577888888999999987
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
+..... +- .......+.|++.|....|........ -+||.... +|.... .
T Consensus 420 G~~~~~---l~-------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~----------------dG~~~~---~ 470 (628)
T 4a0p_A 420 GRSVGV---VL-------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL----------------DGTERE---V 470 (628)
T ss_dssp SCEEEE---EE-------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET----------------TSCSCE---E
T ss_pred CCeEEE---EE-------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC----------------CCCCcE---E
Confidence 665322 11 011246889999995555544433222 24554431 121100 0
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.....-...+.|+++++...|..+.. .+.|..+|+.+.... .+. ........+++... +.+.++=....
T Consensus 471 l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~-~~~--~~~~~~P~glav~~-------~~ly~tD~~~~ 540 (628)
T 4a0p_A 471 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI-VLE--DSNILQPVGLTVFE-------NWLYWIDKQQQ 540 (628)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE--CSSCSCEEEEEEET-------TEEEEEETTTT
T ss_pred EEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE-EEE--cCCCCCcEEEEEEC-------CEEEEEECCCC
Confidence 01111234689999998777776654 578999998654322 111 12223345565532 55555555667
Q ss_pred cEEEEECCCCceEEee
Q 003360 420 SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~ 435 (826)
.|...|..+|+....+
T Consensus 541 ~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 541 MIEKIDMTGREGRTKV 556 (628)
T ss_dssp EEEEEETTSSSCCEEE
T ss_pred eEEEEECcCCCCcEEE
Confidence 8999998888765554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=84.75 E-value=4.7 Score=47.37 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=78.9
Q ss_pred eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCC
Q 003360 239 HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~ 316 (826)
|++.+ .++++-...+.|+.+++.+..... .. ...+.........|++.+.++.|+. -...+.|.++++....
T Consensus 413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--~~----~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 413 TEVASNRIYWSDLSQRMICSTQLDRAHGVS--SY----DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp EETTTTEEEECCTTTTSBEEEESCCCCC-C--CC----CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred cccccCeEEEEecCCCeEEEEecCCCCCCc--ce----EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 66544 455565667888888885411000 00 0000001123456788765544444 3456788888875321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
. ..... .-.....|+++|.+.+|..... .+.|.++++......... ...-..
T Consensus 487 ~----------------------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~---~~~l~~ 541 (699)
T 1n7d_A 487 R----------------------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQW 541 (699)
T ss_dssp E----------------------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES---CSSCSS
T ss_pred e----------------------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE---eCCCCC
Confidence 1 01111 1123567888887665555443 267888887543221101 111234
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...|+|++. .+.+.++-+..+.|.+++..
T Consensus 542 PnGlavd~~-----~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 542 PNGITLDLL-----SGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCCEEECTT-----TCCEEEEETTTTEEEEECSS
T ss_pred ccEEEEecc-----CCEEEEEecCCCeEEEEccC
Confidence 556888873 24444555566789999886
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=84.33 E-value=45 Score=35.24 Aligned_cols=104 Identities=7% Similarity=0.133 Sum_probs=62.5
Q ss_pred EEEEEEC--CCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---C------------C
Q 003360 245 LFITGHS--DGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---S------------G 305 (826)
Q Consensus 245 ~l~Tgs~--DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---d------------g 305 (826)
++++-|. +.+|.+|++ .+....++..+... .-...+.+.+.+++++.++... | .
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC-------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 6666666 678889887 33443333333311 1157889999999987776541 1 1
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCC
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEG 377 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~ 377 (826)
.=.||.+..+ .... + ...-..-+.|+|+||++.|.++. ..+.|..||+..
T Consensus 202 ~g~vyr~d~~-----------------~~~~---~--~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSPN-----------------DVRV---V--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECTT-----------------CCEE---E--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEECC-----------------eEEE---e--ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2344444421 1110 1 11123468899999998877665 578899999863
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.18 E-value=56 Score=36.23 Aligned_cols=167 Identities=9% Similarity=-0.026 Sum_probs=82.5
Q ss_pred CEEEEEEee-CCCeEEEecC--CcEEEeccCCCceeecccccCCc---cee--e-------CCCCCEEEEE-ECCCc---
Q 003360 194 SITAMKLIT-GNSFILSSAD--EDYSLLAKSVPPLLDFETKLKDG---SQS--H-------SKVKNLFITG-HSDGA--- 254 (826)
Q Consensus 194 ~Vt~~~fs~-~~~~l~~~~d--~~i~~w~~~~~~~~~~~~~h~g~---V~~--~-------s~~~~~l~Tg-s~DGt--- 254 (826)
....++|.| +...|+.+.+ ..|++.+.....+..+...-.++ ... | +++++.|+.+ ..++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356788888 4555666552 34555555444444431111111 222 7 8999844444 44423
Q ss_pred ---EEEEeCCC-Ccee--e-eeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeC-------CCCCcc
Q 003360 255 ---INFWDVSC-PLFL--L-ILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLK-------YEPHAI 319 (826)
Q Consensus 255 ---VriWD~s~-~~~~--~-i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~-------~~~~~~ 319 (826)
|.+.+... .... . ...+. . ......++++|++ .++++-..++.|..||+. ++....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-----A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-----E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CceEEEEecCCCCceeecccceeec-----c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 55565422 1210 0 00010 0 1234577889954 555566677889999886 332200
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEG 377 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~ 377 (826)
+.... ..+..-. +.........+.|+|+|+|..|.++ +....|+.+|...
T Consensus 291 p~~~~-----~~g~~~~---l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKN-----NPNTFKQ---LFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CBGGG-----CTTTEEE---EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccc-----cccccce---eEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 00000 0000000 1111112346789999999965554 4677888877643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=66 Score=36.82 Aligned_cols=197 Identities=10% Similarity=-0.010 Sum_probs=102.5
Q ss_pred CCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..++|.+.+..+..+ . .+.|..+.........+....-+.... +.. .+++++|-+..+.|.+-++.+.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 356788898855555443 3 566666644332222221111111222 443 56688887888899999986554222
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+-. ..-.....|++.|....|...... +.|...++..... .. +. ...
T Consensus 429 ---l~~-------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~----------------~~----l~-~~~ 477 (619)
T 3s94_A 429 ---LIS-------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR----------------VV----LV-NTS 477 (619)
T ss_dssp ---EEC-------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------EE----EE-CSS
T ss_pred ---EEE-------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc----------------EE----EE-eCC
Confidence 110 112467899999986666655442 3444444432111 10 11 111
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
-...+.|+++++...|..+. ..+.|..+|+.+........ ........++... +.+.++-...+.|...
T Consensus 478 l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glav~~-------~~ly~tD~~~~~I~~~ 547 (619)
T 3s94_A 478 LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE---DKIPHIFGFTLLG-------DYVYWTDWQRRSIERV 547 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE---CCCCSSCCEEEET-------TEEEEECTTSSCEEEE
T ss_pred CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec---cCCCCcEEEEEEC-------CEEEEeecCCCeEEEE
Confidence 23467899998776776665 45778888886543221111 1111122343322 3333343445567777
Q ss_pred ECCCCc
Q 003360 425 DSDNGN 430 (826)
Q Consensus 425 d~~tg~ 430 (826)
|..+|.
T Consensus 548 ~k~~g~ 553 (619)
T 3s94_A 548 HKRSAE 553 (619)
T ss_dssp ESSSCC
T ss_pred EcCCCc
Confidence 777763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.95 E-value=52 Score=33.53 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=34.7
Q ss_pred CCCEEEEEECC--------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C-----CcE
Q 003360 242 VKNLFITGHSD--------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S-----GMV 307 (826)
Q Consensus 242 ~~~~l~Tgs~D--------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d-----g~V 307 (826)
++.+++.|+.+ ..+.+||........+..+.. ....-.++. -++.+++.|+. + ..+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--------VVYGHTVLS--HMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--------CCBSCEEEE--ETTEEEEECCBCTTSCBCCCE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--------cccceeEEE--ECCEEEEEeCCCCCCcccceE
Confidence 56777777743 458888886665433222211 111111222 35567777776 2 357
Q ss_pred EEEEeCCC
Q 003360 308 RIFKLKYE 315 (826)
Q Consensus 308 ~iwd~~~~ 315 (826)
.+||..++
T Consensus 168 ~~yd~~~~ 175 (315)
T 4asc_A 168 CVYDPKKF 175 (315)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 77887644
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=80.76 E-value=61 Score=34.22 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCC--CceeeeeecccccccccccCCCCeEEEEEeC--CCC-EEEEE-eC--CCcEEEEEeCCCCCccccc
Q 003360 251 SDGAINFWDVSC--PLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSR-VLVSG-DQ--SGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 251 ~DGtVriWD~s~--~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~-~Lasg-s~--dg~V~iwd~~~~~~~~~~~ 322 (826)
.+|.|.++|... .... .+..... .+.........|++.+ ++. .|.++ .. +.+|.+|++.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~---~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----- 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVS---ELEIIGN-TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----- 151 (355)
T ss_dssp -CCEEEEEETTSSSCCEE---ECEEECS-SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-----
T ss_pred CCCeEEEEecCCCCCceE---EEEccCC-CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-----
Confidence 689999999852 2221 2221100 0111123445666655 342 34333 33 45788888874311
Q ss_pred eEEEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEe-----------------cCCeEEEEecCCCeeEEe
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGS-----------------DQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs-----------------~dG~V~vwD~~~~~~l~~ 383 (826)
...+ +.... .-.....+.+.++|.+.++.. ..|.|.-+|...-+.+
T Consensus 152 -----------~~~~--~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~-- 216 (355)
T 3sre_A 152 -----------SLLH--LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV-- 216 (355)
T ss_dssp -----------EEEE--EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--
T ss_pred -----------EEEE--EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--
Confidence 1100 11111 123478899999998777654 1255655665322222
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
. ..-.....++|+| |+..|+++. ..+.|..|+..
T Consensus 217 ~----~~l~~pNGia~sp------Dg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 217 A----EGFDFANGINISP------DGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp E----EEESSEEEEEECT------TSSEEEEEEGGGTEEEEEEEC
T ss_pred e----cCCcccCcceECC------CCCEEEEEeCCCCeEEEEEEC
Confidence 1 1112356689998 687777665 56789999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 826 | ||||
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 |
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 42/314 (13%), Positives = 86/314 (27%), Gaps = 18/314 (5%)
Query: 3 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG--TQITP 60
G++ Q Y K +T+ G + + G I W + + ++ + T IT
Sbjct: 2 GSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 61 ICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKL 120
I + G LK V A G A+ S L V +
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA--- 117
Query: 121 ALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSA 180
I + ++ S + L F A + ++ + S
Sbjct: 118 ----CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 173
Query: 181 PKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHS 240
V + + + + K S S
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233
Query: 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300
TG D ++ W+++ P I+ + + + ++ + +VS
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN------SVIWLNE--TTIVS 285
Query: 301 GDQSGMVRIFKLKY 314
Q ++ + + +
Sbjct: 286 AGQDSNIKFWNVPF 299
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.001
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 236 SQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295
S + F++ D +N W P I K+ S + +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESS---------SVLSCDISVDD 318
Query: 296 RVLVSGDQSGMVRIFKLKY 314
+ +V+G ++++ Y
Sbjct: 319 KYIVTGSGDKKATVYEVIY 337
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 0.001
Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 31/139 (22%)
Query: 236 SQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295
++ K ++G D I WDVS + + +
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVS----------TGMCLMTLVGHDNWVRGVLFHSGG 259
Query: 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 355
+ ++S +R++ K N + ++ + + SL+ +
Sbjct: 260 KFILSCADDKTLRVWDYK-------------------NKRCMKTLNAHE--HFVTSLDFH 298
Query: 356 RNSQHLAVGSDQGYVYLLD 374
+ + ++ GS V + +
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 236 SQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295
S + ++ ++G D + FWD +L L+ S++ ++L +
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKK--SGNPLLMLQGHRNSVISVAVANGSSLGPEY-- 368
Query: 296 RVLVSGDQSGMVRIFKLK 313
V +G RI+K K
Sbjct: 369 NVFATGSGDCKARIWKYK 386
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 826 | |||
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.88 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.86 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.84 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.84 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.81 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.74 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.61 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.59 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.56 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.54 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.49 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.39 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.39 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.38 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.36 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.26 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.21 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.1 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.71 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.5 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.44 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.28 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.17 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.99 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.96 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.66 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.64 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.57 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.52 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.47 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.47 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.43 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.53 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.98 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.4 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.38 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.46 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.73 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.76 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 84.99 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.22 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 82.11 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 81.87 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 80.07 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-29 Score=275.71 Aligned_cols=250 Identities=12% Similarity=0.152 Sum_probs=182.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++++.+|.+.+||.... .....+..|...|+++.+++++..+++++ ++.+++|+.....
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 196 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENR-----------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196 (388)
T ss_dssp SEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred Ccceeccccccccccccccc-----------------ccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence 44566777788888886551 12344578999999999999999999988 9999999776544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
.......+...+.. +.+++++|++|+.||.|++||...... +..+... ......|...|++++|+|++.+|++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC-------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCcc--ceeeccc-cccccCCCCCEEEEEECCCCCEEEEEE
Confidence 44332333333333 566889999999999999999944432 1222211 223356788999999999999999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.||.|++||++....... ......+... .....|...|++++|+|++.+|++|+.||.|++||+++++++.
T Consensus 274 ~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 344 (388)
T d1erja_ 274 LDRSVKLWNLQNANNKSD-----SKTPNSGTCE----VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344 (388)
T ss_dssp TTSEEEEEEC--------------------CEE----EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEeccCCccccc-----ccccccccee----eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 999999999985533110 0000011111 4455677889999999999999999999999999999999986
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++. +|...|+++++.+......++.+|++|+.||+|+||+++
T Consensus 345 ~l~---~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 345 MLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEE---CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEe---CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 654 789999999987754455578999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.4e-29 Score=269.44 Aligned_cols=283 Identities=15% Similarity=0.174 Sum_probs=219.2
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
|...|+|++| +|+|++||||+ ||.|++||+.++.... ++.. .....+..+|..++|.. ++
T Consensus 50 H~~~V~~v~f-s~~g~~latg~-dg~V~iWd~~~~~~~~---------~~~~--~~~~~h~~~I~~v~~s~----dg--- 109 (337)
T d1gxra_ 50 HGEVVCAVTI-SNPTRHVYTGG-KGCVKVWDISHPGNKS---------PVSQ--LDCLNRDNYIRSCKLLP----DG--- 109 (337)
T ss_dssp CSSCCCEEEE-CSSSSEEEEEC-BSEEEEEETTSTTCCS---------CSEE--EECSCTTSBEEEEEECT----TS---
T ss_pred CCCcEEEEEE-CCCCCEEEEEE-CCEEEEEEccCCcccc---------eeEE--eeecCCCCcEEEEEEcC----CC---
Confidence 5678999999 68999999997 8999999998752111 1100 11122344566666643 22
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
..+++++.+|.|.+||....
T Consensus 110 ------------------------------------------------------~~l~s~~~dg~i~iwd~~~~------ 129 (337)
T d1gxra_ 110 ------------------------------------------------------CTLIVGGEASTLSIWDLAAP------ 129 (337)
T ss_dssp ------------------------------------------------------SEEEEEESSSEEEEEECCCC------
T ss_pred ------------------------------------------------------CEEEEeeccccccccccccc------
Confidence 23444555667777776541
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEE
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
.......+..|...|.+++|++++..+++++ |+.+++|+............|.+.|.+ |+++++.+++
T Consensus 130 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 130 ---------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp -----------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1122344678899999999999999999988 999999976654444444678999988 9999999999
Q ss_pred EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 249 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|+.||+|++||+..... +..+ .|...|++++|+|++.+|++|+.||.|++||++....
T Consensus 201 ~~~d~~v~i~d~~~~~~--~~~~---------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------- 258 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQ--LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----------- 258 (337)
T ss_dssp EETTSEEEEEETTTTEE--EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------
T ss_pred cccccccccccccccee--eccc---------ccccceEEEEEcccccccceecccccccccccccccc-----------
Confidence 99999999999954442 1222 2567999999999999999999999999999984432
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.....|...|++++|+|++++|++|+.||.|++||+.+++.+... .|...|++++|+| +
T Consensus 259 -----------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~s~------d 317 (337)
T d1gxra_ 259 -----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISV------D 317 (337)
T ss_dssp -----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEECT------T
T ss_pred -----------ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc----cCCCCEEEEEEeC------C
Confidence 444567888999999999999999999999999999999988544 4678999999998 6
Q ss_pred CcEEEEEECCCcEEEEEC
Q 003360 409 KNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~ 426 (826)
+.+|++|+.||+|+|||+
T Consensus 318 ~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEE
Confidence 899999999999999995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2e-29 Score=266.18 Aligned_cols=295 Identities=14% Similarity=0.149 Sum_probs=210.7
Q ss_pred CccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee
Q 003360 3 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY 82 (826)
Q Consensus 3 ~~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~ 82 (826)
|.+++.++.|...|+|++| +|||++||+|+.||.|++||+.++...+. -...+..+|..+.|..
T Consensus 2 g~~~~~~~GH~~~V~~l~~-s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~---------------~~~~h~~~v~~v~~~~ 65 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRV---------------FPDVHATMITGIKTTS 65 (299)
T ss_dssp TEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEEC---------------SSCSCSSCEEEEEECT
T ss_pred CccceEcCCCCCCcEEEEE-CCCCCEEEEEcCCCeEEEEECCCCcEEEE---------------EcCCCCCcEEEEEeec
Confidence 5678889999999999999 68999999999999999999988622221 0123455777777754
Q ss_pred eCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecc
Q 003360 83 ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDD 162 (826)
Q Consensus 83 ~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~ 162 (826)
++.+++++.+ +.+.+|+.
T Consensus 66 ----~g~~~~~~~d----------------------------------------------------------~~v~~~~~ 83 (299)
T d1nr0a2 66 ----KGDLFTVSWD----------------------------------------------------------DHLKVVPA 83 (299)
T ss_dssp ----TSCEEEEETT----------------------------------------------------------TEEEEECS
T ss_pred ----cceeecccce----------------------------------------------------------eeEEEecc
Confidence 3344444433 33334443
Q ss_pred hhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eC
Q 003360 163 CQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
..- . ..........|...+.+++|+++++.++++.++.+.+|+... .... .+...+.+ ++
T Consensus 84 ~~~-------~-------~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~--~~~~~~~~~~~s 145 (299)
T d1nr0a2 84 GGS-------G-------VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEV--PISYNSSCVALS 145 (299)
T ss_dssp SSS-------S-------SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEE--ECSSCEEEEEEC
T ss_pred CCc-------c-------cccccccccccccccccccccccccccccccccccccccccc--cccc--cccccccccccc
Confidence 220 0 000111124566788999999999998888888999997543 1111 12233444 99
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|++++|++|+.||.|++||+.......+.. ..|...|++++|+|++.+|++|+.||.|++||+..+....
T Consensus 146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~- 215 (299)
T d1nr0a2 146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT---------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA- 215 (299)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEE---------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-
T ss_pred cccccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccc-
Confidence 999999999999999999996554322111 3477899999999999999999999999999997543210
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.. .....|..+|++++|+|++.+|++|+.||.|+|||++++...........+...|.++.|.
T Consensus 216 -------------~~----~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (299)
T d1nr0a2 216 -------------HT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 278 (299)
T ss_dssp -------------CC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred -------------cc----ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC
Confidence 00 1122356789999999999999999999999999998775432223323455677777665
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+ +.+|++|+.|++|++||+.
T Consensus 279 ~-------~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 279 N-------ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp E-------TTEEEEEETTSCEEEEECC
T ss_pred C-------CCEEEEEeCCCEEEEEecc
Confidence 5 7899999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.6e-28 Score=253.75 Aligned_cols=287 Identities=12% Similarity=0.154 Sum_probs=214.4
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
....++..|...|++++| +|+|.+||||+.||+|++||+.++..... + ..+..+|..+.|..
T Consensus 8 ~~~~~L~GH~~~I~~l~~-sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~------------~----~~h~~~V~~~~~~~- 69 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGDFERT------------L----KGHTDSVQDISFDH- 69 (317)
T ss_dssp SCSCEEECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCCCCEE------------E----CCCSSCEEEEEECT-
T ss_pred CccEEEcCCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCEEEE------------E----eCCCCcEEEEeeec-
Confidence 344556678899999999 58999999999999999999988622211 1 12345677777754
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++.+++.++. .+.+..++..
T Consensus 70 ---~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~ 89 (317)
T d1vyhc1 70 ---SGKLLASCSA---------------------------------------------------------DMTIKLWDFQ 89 (317)
T ss_dssp ---TSSEEEEEET---------------------------------------------------------TSCCCEEETT
T ss_pred ---cccccccccc---------------------------------------------------------cccccccccc
Confidence 2333333322 1112222221
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
. ......+..|...+.++.+++++..+++++ |+.+++|+...........+|...+.+ ++
T Consensus 90 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (317)
T d1vyhc1 90 G-----------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 152 (317)
T ss_dssp S-----------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred c-----------------cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecc
Confidence 1 112233467888899999999999999988 999999976654444333678888877 99
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--------------------CCEEEE
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--------------------SRVLVS 300 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--------------------~~~Las 300 (826)
+++++|++|+.||.|++|+...... +..+ ..|...|.+++|+|+ +..+++
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~~~--~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATKEC--KAEL--------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCE--EEEE--------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred cCCCEEEEEeCCCeEEEEeecccee--eEEE--------ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 9999999999999999999954442 1222 245567777777665 347999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
|+.||.|++|+++++.. . ..+..|...|++++|+|++.+|++|+.||.|+|||+.++++
T Consensus 223 ~~~d~~i~~~~~~~~~~-----------------~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 281 (317)
T d1vyhc1 223 GSRDKTIKMWDVSTGMC-----------------L----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281 (317)
T ss_dssp EETTSEEEEEETTTTEE-----------------E----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred ccCCCEEEEEECCCCcE-----------------E----EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE
Confidence 99999999999984322 1 33445678899999999999999999999999999999988
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
+..+. +|..+|++++|++ ++++|++|+.||+|+|||
T Consensus 282 ~~~~~---~h~~~V~~~~~s~------~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 282 MKTLN---AHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEE---CCSSCEEEEEECS------SSSCEEEEETTSEEEEEC
T ss_pred EEEEc---CCCCCEEEEEEcC------CCCEEEEEeCCCeEEEeC
Confidence 86554 7889999999998 589999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=4.4e-27 Score=257.42 Aligned_cols=222 Identities=12% Similarity=0.122 Sum_probs=163.4
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-ec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-DF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
+..|..+|++++|+|+++++++++ |++|++|+....... .. ..+|...|.+ |+|+++.|++|+.|++|++|+...
T Consensus 47 l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 47 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeec
Confidence 357888999999999999999998 999999976433221 11 2568888988 999999999999999999999833
Q ss_pred -CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe-ecCCCCeEEEEEE
Q 003360 263 -PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT-GSKKGNSHIIHSV 340 (826)
Q Consensus 263 -~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~-~s~~~~~~~~~~~ 340 (826)
......... ...|...|++++|+|++.+|++|+.||+|++|+................ ..+.+.. . .
T Consensus 127 ~~~~~~~~~~-------~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 195 (371)
T d1k8kc_ 127 ENDWWVCKHI-------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL-M---F 195 (371)
T ss_dssp TTTEEEEEEE-------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE-E---E
T ss_pred cccccccccc-------ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceee-e---e
Confidence 221111111 2357789999999999999999999999999998765332111000000 0011111 1 3
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
....+.+.|.+++|+|+|.+|++|+.||.|++||+..+..+.... .|..+|.+++|++ |+.+|+ ++.|+.
T Consensus 196 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~s~~fs~------d~~~la-~g~d~~ 265 (371)
T d1k8kc_ 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFIT------ESSLVA-AGHDCF 265 (371)
T ss_dssp ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEE------TTEEEE-EETTSS
T ss_pred eccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee---cccccceeeeecC------CCCEEE-EEcCCc
Confidence 334567789999999999999999999999999999998886554 6788999999998 466555 566887
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
+++|......
T Consensus 266 ~~~~~~~~~~ 275 (371)
T d1k8kc_ 266 PVLFTYDSAA 275 (371)
T ss_dssp CEEEEEETTT
T ss_pred eEEEEeeCCC
Confidence 7666554433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=5.9e-27 Score=249.82 Aligned_cols=291 Identities=13% Similarity=0.177 Sum_probs=205.6
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
..++..|...|+|++| +|+|.+||||+.||.|++||+.++.... .+ ..+..+|..+.|..
T Consensus 48 ~~tL~GH~~~I~~l~~-s~~~~~l~sgs~Dg~v~iWd~~~~~~~~------------~~----~~~~~~v~~v~~~~--- 107 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVH------------AI----PLRSSWVMTCAYAP--- 107 (340)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTTEEEE------------EE----ECSCSCEEEEEECT---
T ss_pred eEEECCCCCCEEEEEE-CCCCCEEEEEECCCceeeeecccceeEE------------EE----ecccccEEeeEeec---
Confidence 3456678899999999 5799999999999999999998862111 11 12345777777754
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++++|+.+ +.+.+|+....
T Consensus 108 -~~~~l~~~~~d---------------------------------------------------------~~i~~~~~~~~ 129 (340)
T d1tbga_ 108 -SGNYVACGGLD---------------------------------------------------------NICSIYNLKTR 129 (340)
T ss_dssp -TSSEEEEEETT---------------------------------------------------------CCEEEEESSSS
T ss_pred -cceeeeeeccc---------------------------------------------------------ceeeccccccc
Confidence 34445544442 22223322210
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
. ........+..|.....+.....+........+.....+.............+...+.. +.+.+
T Consensus 130 -------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (340)
T d1tbga_ 130 -------E------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp -------C------SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred -------c------cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence 0 00111223455555555555555544444444777777754443333333455666666 88899
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
.++++|+.|++|++||+..... +.. +..|...|++++|+|++.+|++|+.||.|++|+++.....
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~--~~~--------~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~----- 261 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMC--RQT--------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL----- 261 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----
T ss_pred ceeEEeecCceEEEEECCCCcE--EEE--------EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc-----
Confidence 9999999999999999955442 222 3468889999999999999999999999999999843210
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.. .....+...|++++|+|++.+|++|+.||.|+|||+.+++++... .+|..+|++++|+|
T Consensus 262 -----------~~---~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~H~~~V~~l~~s~-- 322 (340)
T d1tbga_ 262 -----------MT---YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTD-- 322 (340)
T ss_dssp -----------EE---ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT--
T ss_pred -----------cc---cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEeC--
Confidence 00 112233567999999999999999999999999999999988655 37889999999998
Q ss_pred cCCCCCcEEEEEECCCcEEEEE
Q 003360 404 LQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++.+|++|+.||+|+|||
T Consensus 323 ----d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 323 ----DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----TSSCEEEEETTSCEEEEC
T ss_pred ----CCCEEEEEccCCEEEEeC
Confidence 689999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.1e-26 Score=248.21 Aligned_cols=287 Identities=11% Similarity=0.116 Sum_probs=206.5
Q ss_pred cceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEc
Q 003360 15 QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMG 94 (826)
Q Consensus 15 ~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~g 94 (826)
.+.++++ +|+|..||.+ .++.|.+||+.++..... ...|..+|..++|+. +|.++
T Consensus 19 ~~~~~a~-~~~g~~l~~~-~~~~v~i~~~~~~~~~~~----------------~~~H~~~v~~~~~sp----~g~~l--- 73 (311)
T d1nr0a1 19 TAVVLGN-TPAGDKIQYC-NGTSVYTVPVGSLTDTEI----------------YTEHSHQTTVAKTSP----SGYYC--- 73 (311)
T ss_dssp CCCCCEE-CTTSSEEEEE-ETTEEEEEETTCSSCCEE----------------ECCCSSCEEEEEECT----TSSEE---
T ss_pred CeEEEEE-cCCCCEEEEE-eCCEEEEEECCCCceeEE----------------EcCCCCCEEEEEEeC----CCCeE---
Confidence 4556666 6899999998 588899999987511111 123455677777743 23333
Q ss_pred cCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccC
Q 003360 95 ASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS 174 (826)
Q Consensus 95 g~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~ 174 (826)
++++.+|.+.+||...-
T Consensus 74 ------------------------------------------------------atg~~dg~i~iwd~~~~--------- 90 (311)
T d1nr0a1 74 ------------------------------------------------------ASGDVHGNVRIWDTTQT--------- 90 (311)
T ss_dssp ------------------------------------------------------EEEETTSEEEEEESSST---------
T ss_pred ------------------------------------------------------eccccCceEeeeeeecc---------
Confidence 44445567778876551
Q ss_pred CCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEE
Q 003360 175 RSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFIT 248 (826)
Q Consensus 175 ~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~T 248 (826)
.......+..|..+|.+++|+++++.+++++ +..+++|+...........+|.+.|.+ |+|+++ +|++
T Consensus 91 ------~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 91 ------THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp ------TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ------ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence 1123344678999999999999999999876 345888865543333333678999988 999988 5889
Q ss_pred EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 249 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|+.||+|++||+..... +.. +..|..+|+++.|+|++++|++|+.||.|++||+..+.... .+
T Consensus 165 gs~d~~i~i~d~~~~~~--~~~--------~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~-------~~ 227 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKF--KST--------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-------VF 227 (311)
T ss_dssp EETTSCEEEEETTTBEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-------EC
T ss_pred ccccccccccccccccc--ccc--------cccccccccccccCccccccccccccccccccccccccccc-------cc
Confidence 99999999999955442 111 23577899999999999999999999999999998543210 00
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.... .....|.+.|++++|+|++++|++|+.||+|+|||+++++++.+..........+.++.|.
T Consensus 228 ~~~~-------~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~-------- 292 (311)
T d1nr0a1 228 EDDS-------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-------- 292 (311)
T ss_dssp BCTT-------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--------
T ss_pred cccc-------cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--------
Confidence 0000 1223467789999999999999999999999999999999986665433333344444443
Q ss_pred CcEEEEEECCCcEEEEECC
Q 003360 409 KNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~ 427 (826)
+..|++++.||.|++||++
T Consensus 293 ~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 KQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 5679999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.6e-26 Score=246.94 Aligned_cols=267 Identities=9% Similarity=0.029 Sum_probs=205.5
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc--e
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP--L 225 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~--~ 225 (826)
++.+..+.+++||.... . ....+..|...|++++|+|+++++++|+ |+.|++|+..... .
T Consensus 32 l~~~~~~~v~i~~~~~~----------------~-~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 32 IQYCNGTSVYTVPVGSL----------------T-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp EEEEETTEEEEEETTCS----------------S-CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EEEEeCCEEEEEECCCC----------------c-eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 44456677888887651 1 1123578999999999999999999998 9999999755432 2
Q ss_pred eecccccCCccee--eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHS--DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVS 300 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Las 300 (826)
......|.+.|.+ |++++++|++++. +..++||++..... ...+..|...|++++|+|++. .|++
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~----------~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----------NGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----------CBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ccccccccCccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccceeeecc
Confidence 2223668999988 9999999999986 46699999944331 122356888999999999987 4889
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
|+.||.|++||+++... . .....|..+|++++|+|++.++++|+.||.|++||+..+..
T Consensus 165 gs~d~~i~i~d~~~~~~-----------------~----~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~ 223 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKF-----------------K----STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 223 (311)
T ss_dssp EETTSCEEEEETTTBEE-----------------E----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccccccccccccccccc-----------------c----cccccccccccccccCccccccccccccccccccccccccc
Confidence 99999999999984322 1 33345678899999999999999999999999999999887
Q ss_pred EEeeec----ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCC
Q 003360 381 LYQKHI----ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDG 456 (826)
Q Consensus 381 l~~~~~----~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~ 456 (826)
+..+.. ..+|..+|++++|+| ++++|++|+.||+|+|||.++++++.++..+.......+++...
T Consensus 224 ~~~~~~~~~~~~~h~~~V~~~~~s~------~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~----- 292 (311)
T d1nr0a1 224 TGVFEDDSLKNVAHSGSVFGLTWSP------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT----- 292 (311)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC-----
T ss_pred cccccccccccccccccccccccCC------CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec-----
Confidence 755432 235788999999998 59999999999999999999999998876654433333333221
Q ss_pred cccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEec
Q 003360 457 LARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSL 498 (826)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl 498 (826)
.+.+++++.++.|++|++
T Consensus 293 ------------------------~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 293 ------------------------KQALVSISANGFINFVNP 310 (311)
T ss_dssp ------------------------SSCEEEEETTCCEEEEET
T ss_pred ------------------------CCEEEEEECCCEEEEEeC
Confidence 234666777889999986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.9e-25 Score=239.19 Aligned_cols=280 Identities=16% Similarity=0.157 Sum_probs=210.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC----ceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP----PLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~----~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
-.|...|++++|++++++|++|+|+.|++|+.... ..... ..+|.+.|.+ |+|++++|++|+.||+|++||+.
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 37899999999999999999999999999964332 11111 3568999988 99999999999999999999985
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
......... +..|...|.+++|+|++.++++++.|+.|++|++.++.. . ..
T Consensus 128 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~-----------------~----~~ 178 (337)
T d1gxra_ 128 APTPRIKAE--------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-----------------V----RQ 178 (337)
T ss_dssp CC--EEEEE--------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------E----EE
T ss_pred ccccccccc--------ccccccccccccccccccccccccccccccccccccccc-----------------c----cc
Confidence 443222222 235778999999999999999999999999999984322 1 33
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+...|++++|++++..+++|+.||.|++||+++++.+... .+..+|.+++|++ ++.+|++|+.|+.|
T Consensus 179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~------~~~~l~~~~~d~~i 248 (337)
T d1gxra_ 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCP------TGEWLAVGMESSNV 248 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECT------TSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccccccccccccccceeeccc----ccccceEEEEEcc------cccccceecccccc
Confidence 4456788999999999999999999999999999999887444 4678999999998 58999999999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEeccc
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLSH 500 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~~ 500 (826)
++||..+++..... .| ...+.++.+ .+++.+++++ .|+.|++|++.
T Consensus 249 ~i~d~~~~~~~~~~-~~---~~~i~~v~~----------------------------s~~g~~l~s~s~Dg~i~iwd~~- 295 (337)
T d1gxra_ 249 EVLHVNKPDKYQLH-LH---ESCVLSLKF----------------------------AYCGKWFVSTGKDNLLNAWRTP- 295 (337)
T ss_dssp EEEETTSSCEEEEC-CC---SSCEEEEEE----------------------------CTTSSEEEEEETTSEEEEEETT-
T ss_pred cccccccccccccc-cc---ccccceEEE----------------------------CCCCCEEEEEeCCCeEEEEECC-
Confidence 99999988766432 22 223333332 3344555555 45689999987
Q ss_pred cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 501 AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 501 ~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
..+.+...... .. ... +..++++..|++...||.|+||.|
T Consensus 296 ----~~~~~~~~~~~-~~-v~~-~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 296 ----YGASIFQSKES-SS-VLS-CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----TCCEEEEEECS-SC-EEE-EEECTTSCEEEEEETTSCEEEEEE
T ss_pred ----CCCEEEEccCC-CC-EEE-EEEeCCCCEEEEEeCCCeEEEEEE
Confidence 33344443322 21 111 111256778888889999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1e-25 Score=246.40 Aligned_cols=247 Identities=14% Similarity=0.115 Sum_probs=189.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
++..+|+|++|+|+++.+++++ |+.|++|+..... ...+ .+|.+.|.+ |+|++++|+||+.|++|+|||+...
T Consensus 5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence 3446799999999999999998 8999999765432 2223 689999999 9999999999999999999999555
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
....... +..|...|++++|+|+++.|++|+.|++|++|++....... ... ....
T Consensus 84 ~~~~~~~--------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~--------------~~~---~~~~ 138 (371)
T d1k8kc_ 84 TWKPTLV--------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--------------VCK---HIKK 138 (371)
T ss_dssp EEEEEEE--------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--------------EEE---EECT
T ss_pred ccccccc--------cccccccccccccccccccceeecccCcceeeeeecccccc--------------ccc---cccc
Confidence 4322222 23567899999999999999999999999999997443210 000 2223
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE---------------eeecccCCCCCeeEEEEeecccCCCC
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY---------------QKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~---------------~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.+...|++++|+|++.+||+|+.||+|++||........ .......|...|.+++|+| +
T Consensus 139 ~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~ 212 (371)
T d1k8kc_ 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA------N 212 (371)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS------S
T ss_pred ccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec------c
Confidence 457789999999999999999999999999986542110 0111246788899999999 5
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+++|++++.|+.|++||..+++.+..+..|.. .+.++.+. +++.+++++
T Consensus 213 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~s~~fs----------------------------~d~~~la~g 261 (371)
T d1k8kc_ 213 GSRVAWVSHDSTVCLADADKKMAVATLASETL---PLLAVTFI----------------------------TESSLVAAG 261 (371)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSC---CEEEEEEE----------------------------ETTEEEEEE
T ss_pred cccccccccCCcceEEeeecccceeeeecccc---cceeeeec----------------------------CCCCEEEEE
Confidence 89999999999999999999999888755432 23444433 344577777
Q ss_pred ecCcEEEEecc
Q 003360 489 SEKAACAYSLS 499 (826)
Q Consensus 489 se~~irv~sl~ 499 (826)
.++.+++|...
T Consensus 262 ~d~~~~~~~~~ 272 (371)
T d1k8kc_ 262 HDCFPVLFTYD 272 (371)
T ss_dssp TTSSCEEEEEE
T ss_pred cCCceEEEEee
Confidence 78888888765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.7e-24 Score=224.24 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=212.2
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
..+..|+..|.+ |+ +++|++||||+.||+|++||+.++...+ .+ ..|..+|..+.|..
T Consensus 10 ~~l~GH~~~V~s-~~-~~~g~~l~sgs~Dg~i~vWd~~~~~~~~------------~~----~~h~~~V~~v~~~~---- 67 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CL-QFCGNRIVSGSDDNTLKVWSAVTGKCLR------------TL----VGHTGGVWSSQMRD---- 67 (342)
T ss_dssp EEEECSTTSCEE-EE-EEETTEEEEEETTSCEEEEETTTCCEEE------------EC----CCCSSCEEEEEEET----
T ss_pred EEECCcCCceEE-EE-EECCCEEEEEeCCCeEEEEECCCCCEEE------------EE----eCCCCCEEEEEeCC----
Confidence 446667778865 54 3589999999999999999998862211 11 23556899998853
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
.++++|+.+. .+.++...... ... ........+..... ..........++.+.+|+....
T Consensus 68 --~~l~s~s~D~----~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~d~~i~~~~~~~~- 127 (342)
T d2ovrb2 68 --NIIISGSTDR----TLKVWNAETGE--CIH-TLYGHTSTVRCMHL----------HEKRVVSGSRDATLRVWDIETG- 127 (342)
T ss_dssp --TEEEEEETTS----CEEEEETTTTE--EEE-EECCCSSCEEEEEE----------ETTEEEEEETTSEEEEEESSSC-
T ss_pred --Cccccceecc----ccccccccccc--cee-cccccceeEeeeec----------ccccccccccceeEEEeecccc-
Confidence 2566666533 34444333222 111 11111111111111 1234566777888888887651
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCE
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNL 245 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~ 245 (826)
.....+..+.. ....+......++.++ |+.+++|+...........+|...+..+++++.+
T Consensus 128 ----------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (342)
T d2ovrb2 128 ----------------QCLHVLMGHVA--AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 189 (342)
T ss_dssp ----------------CEEEEEECCSS--CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSE
T ss_pred ----------------cceeeeecccc--cceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCE
Confidence 01111222222 2334456666777776 9999999766544433336677666667778899
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
+++|+.||+|++||+..... +.. +..|...|.++++++ .+|++|+.||.|++||+....... .
T Consensus 190 l~s~~~dg~i~~~d~~~~~~--~~~--------~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~-----~ 252 (342)
T d2ovrb2 190 VVSGSLDTSIRVWDVETGNC--IHT--------LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQ-----T 252 (342)
T ss_dssp EEEEETTSCEEEEETTTCCE--EEE--------ECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEE-----E
T ss_pred EEEEeCCCeEEEeeccccee--eeE--------ecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccc-----c
Confidence 99999999999999954442 121 245778898888875 599999999999999997432210 0
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec--ccCCCCCeeEEEEeecc
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI--ASDISSGIVSLQFETCS 403 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~--~~~~~~~V~sl~f~~~~ 403 (826)
+ .....+...+.++.+++ .++++|+.||+|+|||+++++++..... ..+|...|++++|+|
T Consensus 253 ~-------------~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-- 315 (342)
T d2ovrb2 253 L-------------QGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-- 315 (342)
T ss_dssp E-------------CSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS--
T ss_pred c-------------cccceeeeceeecccCC--CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC--
Confidence 0 00112345577777764 5899999999999999999998865542 235778899999999
Q ss_pred cCCCCCcEEEEEECCCc----EEEEECC
Q 003360 404 LQGFEKNFLVIATKDSS----VLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~----V~iwd~~ 427 (826)
++.+|++|+.||+ |++||..
T Consensus 316 ----~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 316 ----TKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ----SEEEEEEECSSSSSCCEEEEEECC
T ss_pred ----CCCEEEEEeCCCCCeeEEEEEeCC
Confidence 5889999999985 9999976
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=7.8e-24 Score=230.98 Aligned_cols=296 Identities=15% Similarity=0.147 Sum_probs=197.7
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCcee-ec-----------------ccccCCccee--eCCCCCEEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL-DF-----------------ETKLKDGSQS--HSKVKNLFITG 249 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~-~~-----------------~~~h~g~V~~--~s~~~~~l~Tg 249 (826)
.|...|+|++|+|+|++|++|+|+.|++|+....... .+ ...|...|.+ |+|++++|++|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 5999999999999999999999999999975432211 11 1246777887 99999999999
Q ss_pred ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 250 HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 250 s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
+.||+|++||...... +.. ...|...|++++|++++..+++|+.+|.|++||.+....
T Consensus 140 ~~dg~v~i~~~~~~~~--~~~--------~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------ 197 (388)
T d1erja_ 140 AEDRLIRIWDIENRKI--VMI--------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------------ 197 (388)
T ss_dssp ETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred cccccccccccccccc--ccc--------cccccccccccccccccccccccccceeeeeeecccccc------------
Confidence 9999999999955442 111 246788999999999999999999999999999974322
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEc-cCCCEEEEEecCCeEEEEecCCCeeEEeeec----ccCCCCCeeEEEEeeccc
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMN-RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI----ASDISSGIVSLQFETCSL 404 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~----~~~~~~~V~sl~f~~~~~ 404 (826)
.....+.....++.++ +++.+|++|+.||.|++||..++..+..... ..+|..+|.++.|++
T Consensus 198 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--- 264 (388)
T d1erja_ 198 ----------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR--- 264 (388)
T ss_dssp ----------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT---
T ss_pred ----------ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC---
Confidence 2223334455555554 5889999999999999999999887754432 235788999999998
Q ss_pred CCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCE
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWF 484 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (826)
++.+|++|+.|+.|++||+.++......... ....... ...... .....+ .+.+++.+
T Consensus 265 ---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~-~~~~~~---------------~~v~~~-~~s~~~~~ 322 (388)
T d1erja_ 265 ---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP--NSGTCEV-TYIGHK---------------DFVLSV-ATTQNDEY 322 (388)
T ss_dssp ---TSSEEEEEETTSEEEEEEC-----------------CEEE-EEECCS---------------SCEEEE-EECGGGCE
T ss_pred ---CCCEEEEEECCCcEEEEeccCCccccccccc--cccceee-eccccc---------------ceEEEE-EECCCCCE
Confidence 5899999999999999999877654332111 0010000 000000 000001 23445566
Q ss_pred EEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeee----eCCceEEEEEEeeceEEEecc
Q 003360 485 VLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFY----SGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 485 vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~----~~~~~~lv~~~~~G~I~i~sl 547 (826)
+++++ ++.|++|++. ..+.+...+.+........... ++.+..|+....||.|+||.+
T Consensus 323 l~sg~~dg~i~vwd~~-----~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 323 ILSGSKDRGVLFWDKK-----SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp EEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEEeCCCEEEEEECC-----CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence 66655 5689999997 3344444433312211111111 156778888899999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.9e-24 Score=226.80 Aligned_cols=335 Identities=12% Similarity=0.098 Sum_probs=212.4
Q ss_pred ccccccccc-eEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 8 SVYHETKQV-TSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 8 ~~~~~~~~i-~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
++..|...| +|+. ++|++||||+.||+|++||+.++... ..+ ..|..+|..++|..
T Consensus 7 tL~GH~~~vitc~~---~~~~~l~tgs~Dg~i~vWd~~~~~~~------------~~l----~~H~~~V~~l~~s~---- 63 (355)
T d1nexb2 7 TLRGHMTSVITCLQ---FEDNYVITGADDKMIRVYDSINKKFL------------LQL----SGHDGGVWALKYAH---- 63 (355)
T ss_dssp EEECCSSSCEEEEE---EETTEEEEEETTTEEEEEETTTTEEE------------EEE----ECCSSCEEEEEEET----
T ss_pred EECCcCCCcEEEEE---ECCCEEEEEeCCCeEEEEECCCCcEE------------EEE----ECCCCCEEEEEEcC----
Confidence 455666665 5544 47899999999999999999886211 111 23566899999964
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++ ++++|+.+ ..+.++.......... ... ............ ..+...++..+.+|.+.+||.....
T Consensus 64 ~~-~l~s~s~D----~~i~iw~~~~~~~~~~--~~~-~~~~~~~~~~~~------~~~~~~~~~~~~d~~i~iw~~~~~~ 129 (355)
T d1nexb2 64 GG-ILVSGSTD----RTVRVWDIKKGCCTHV--FEG-HNSTVRCLDIVE------YKNIKYIVTGSRDNTLHVWKLPKES 129 (355)
T ss_dssp TT-EEEEEETT----CCEEEEETTTTEEEEE--ECC-CSSCEEEEEEEE------ETTEEEEEEEETTSEEEEEECCC--
T ss_pred CC-EEEEEecc----cccccccccccccccc--ccc-cccccccccccc------ccccceeeeecCCCcEEEEEccCCc
Confidence 23 55666653 3455655544332111 111 111111111111 1223556778889999999976532
Q ss_pred HHHhhccCC------CCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-
Q 003360 167 RYLLQYQSR------SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS- 238 (826)
Q Consensus 167 ~~~~~~~~~------~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~- 238 (826)
......... ..+............|...|. .+.+++..++++. |+.+++|+...........++...+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 207 (355)
T d1nexb2 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 207 (355)
T ss_dssp ---------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred eeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccc
Confidence 211111100 001111112222334444443 4567788888888 999999976654433333455666666
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
++++++++++++.||+|++||...... +.. +..|...|++++|++ ++|++|+.||.|++||++...
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~--------~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~- 274 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGEL--MYT--------LQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS- 274 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCE--EEE--------ECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC-
T ss_pred cccccceeeecccccceEEeeecccccc--ccc--------ccccccccccccccc--ceeeeeecccccccccccccc-
Confidence 999999999999999999999954442 122 246888999999875 689999999999999997432
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEE-EEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL-NMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l-~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.....|...+.++ .+++++.+|++| .||+|+|||+++++++. ....+|..+|.+
T Consensus 275 ----------------------~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~--~~~~~~~~~V~~ 329 (355)
T d1nexb2 275 ----------------------RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH--ANILKDADQIWS 329 (355)
T ss_dssp ----------------------EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC--SCTTTTCSEEEE
T ss_pred ----------------------eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE--EEecCCCCCEEE
Confidence 1122334455544 457777766665 58999999999998873 333578899999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
++|++ ..++++++.||+++||..
T Consensus 330 v~~~~-------~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 330 VNFKG-------KTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEET-------TEEEEEEESSSCEEEEEE
T ss_pred EEEcC-------CeEEEEEECCCcEEEEEE
Confidence 99987 567888999999777643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.1e-23 Score=224.27 Aligned_cols=256 Identities=15% Similarity=0.131 Sum_probs=196.0
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
....+|.+|...|++++|+|++++|++|+ |++|++|+............|.+.|.+ |+|+++++++|+.|++|++|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 34556889999999999999999999999 999999976654443333678999988 999999999999999999999
Q ss_pred CCCCc--eeeeeeccc---------------------------------ccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 260 VSCPL--FLLILSLKQ---------------------------------QSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 260 ~s~~~--~~~i~~l~~---------------------------------~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
..... ......+.. ........+...+....+.+...++++|+.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 72211 001111100 0000112234678999999999999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
+.|++||++.+.. . ..+..|.++|++++|+|++.+|++|+.||.|++||++....+...
T Consensus 206 ~~v~i~d~~~~~~-----------------~----~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 206 ASAKLWDVREGMC-----------------R----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp TEEEEEETTTTEE-----------------E----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCcE-----------------E----EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence 9999999984322 1 334457888999999999999999999999999999998877544
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccc
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
.. ..+..+|+++.|++ ++.+|++|+.||.|++||..+++++.++.+|.. .+.++.+
T Consensus 265 ~~-~~~~~~i~~~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~---~V~~l~~-------------- 320 (340)
T d1tbga_ 265 SH-DNIICGITSVSFSK------SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN---RVSCLGV-------------- 320 (340)
T ss_dssp CC-TTCCSCEEEEEECS------SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS---CEEEEEE--------------
T ss_pred cc-ccccCceEEEEECC------CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC---CEEEEEE--------------
Confidence 32 35677899999999 599999999999999999999999998866643 3444433
Q ss_pred ccccccCCCCCCCCCCCCCEEEEee-cCcEEEEe
Q 003360 465 NVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYS 497 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~s 497 (826)
++++.++++++ |+.|+||+
T Consensus 321 --------------s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 321 --------------TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------CTTSSCEEEEETTSCEEEEC
T ss_pred --------------eCCCCEEEEEccCCEEEEeC
Confidence 23445555554 57999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=5.3e-23 Score=215.27 Aligned_cols=287 Identities=11% Similarity=0.089 Sum_probs=216.5
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
.+|.+|..+|++++|+|+++++++|+ |++|++|+..... ...+ .+|.+.|.+ +++++.+++++..++++.+|+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeeccccccccccccccccccccc
Confidence 45789999999999999999999998 9999999765433 3334 679999988 99999999999999999999984
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... ...+..|...+.++.|+|++..+++++.|+.+++||++.+.. . ..
T Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------~----~~ 138 (317)
T d1vyhc1 90 GFEC----------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------V----KT 138 (317)
T ss_dssp SSCE----------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------E----EE
T ss_pred cccc----------ccccccccccceeeeccCCCceEEeeccCcceeEeeccccee-----------------e----eE
Confidence 4432 111245778999999999999999999999999999984432 1 23
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC--------------CC
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ--------------GF 407 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~--------------~~ 407 (826)
+..+...+.+++|++++.+|++|+.||.|++||+.++..+.... .+...+.++.|.+.... ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (317)
T d1vyhc1 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGK 215 (317)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeecc
Confidence 34567789999999999999999999999999999998885553 67788999998874221 11
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL 487 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 487 (826)
++.++++++.|+.|++||..+++++.++..|.. .+.++.+ .+++.++++
T Consensus 216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~v~~~~~----------------------------~~~~~~l~s 264 (317)
T d1vyhc1 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLF----------------------------HSGGKFILS 264 (317)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSS---CEEEEEE----------------------------CSSSSCEEE
T ss_pred CCceeEeccCCCEEEEEECCCCcEEEEEeCCCC---CEEEEEE----------------------------CCCCCEEEE
Confidence 367899999999999999999999988765543 2333332 233445554
Q ss_pred -eecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 488 -CSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 488 -~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
+.++.|+||++. ..+.+.....+ ...+.. +.-++.+..|+....||.|+||
T Consensus 265 ~~~dg~i~iwd~~-----~~~~~~~~~~h-~~~V~~-~~~s~~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 265 CADDKTLRVWDYK-----NKRCMKTLNAH-EHFVTS-LDFHKTAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp EETTTEEEEECCT-----TSCCCEEEECC-SSCEEE-EEECSSSSCEEEEETTSEEEEE
T ss_pred EECCCeEEEEECC-----CCcEEEEEcCC-CCCEEE-EEEcCCCCEEEEEeCCCeEEEe
Confidence 456789999997 33344443322 111111 1112556778888899999987
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=2.6e-23 Score=218.70 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=176.9
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCc
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPP 224 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~ 224 (826)
...++.++.+|.|.+||..+ ..........|...|++++|++++..++++.|+.+++|+.....
T Consensus 24 g~~l~s~s~Dg~v~vWd~~~----------------~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~ 87 (299)
T d1nr0a2 24 GKTLFSADAEGHINSWDIST----------------GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 87 (299)
T ss_dssp SSEEEEEETTSCEEEEETTT----------------CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred CCEEEEEcCCCeEEEEECCC----------------CcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcc
Confidence 35677888999999999765 11111112468899999999999987777779999999654322
Q ss_pred ee---ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 225 LL---DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 ~~---~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.. .....+...+.+ ++++++++++++ ++.+++|+...... + .....+++++|+|++.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~-----~---------~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 88 VDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE-----V---------PISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE-----E---------ECSSCEEEEEECTTSCEEE
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccc-----c---------ccccccccccccccccccc
Confidence 21 112345666666 899998777665 56899999632110 1 1234688999999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+|+.||.|++||+++... .. .....|...|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 153 ~g~~dg~i~~~d~~~~~~-----------------~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 212 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSGASV-----------------SE---VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 212 (299)
T ss_dssp EEETTSEEEEEEEETTEE-----------------EE---EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred cccccccccccccccccc-----------------cc---cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999974321 11 4455678899999999999999999999999999998877
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.+........|..+|++++|+| ++.+|++|+.|+.|++||+.++....
T Consensus 213 ~~~~~~~~~~h~~~v~~l~~s~------~~~~l~sgs~dg~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 213 ELAHTNSWTFHTAKVACVSWSP------DNVRLATGSLDNSVIVWNMNKPSDHP 260 (299)
T ss_dssp EESCCCCCCCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccccccccccccccccccccc------cccceEEEcCCCEEEEEECCCCCcce
Confidence 6644444457889999999999 59999999999999999999876443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.3e-24 Score=222.31 Aligned_cols=194 Identities=14% Similarity=0.190 Sum_probs=140.5
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCC-cEEEEeCCCCceeeeeecc
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDG-AINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DG-tVriWD~s~~~~~~i~~l~ 272 (826)
.+.++.+.+++..++++.++.+.+|.......... ..+...+.+++++++.+++++.|+ .|++|++..... ...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~--~~~~~ 158 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS-VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV--SFDLK 158 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE--EEECS
T ss_pred ceeeeeeccCCceEEEeecccceeeeccceeeeee-ccccceeeeeeccCcceeeeccccceeeeeeccccce--eeeee
Confidence 35567777888777777766666775443332222 223333444788888888888775 799999853331 11222
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
..|...|++|+|+|++.+|++|+.||.|++||+..+... . .....|..+|+++
T Consensus 159 -------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----------------~---~~~~~h~~~v~~~ 211 (287)
T d1pgua2 159 -------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----------------T---SRWAFRTSKINAI 211 (287)
T ss_dssp -------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------------E---CCSCCCSSCEEEE
T ss_pred -------eccCCceeEEEeccCccccccccccccccceeecccccc-----------------c---cccccccccccee
Confidence 235678999999999999999999999999999743221 0 1233457789999
Q ss_pred EEccC----------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 353 NMNRN----------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 353 ~~s~~----------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+|+|. +.++|+|+.||+|+|||++.+... .....+|...|+++.|++ +..|++++.|++|+
T Consensus 212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~--~~~~~~h~~~V~~v~~~~-------~~~l~s~g~D~~v~ 282 (287)
T d1pgua2 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDGVNNLLWET-------PSTLVSSGADACIK 282 (287)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC--EEETTSSTTCEEEEEEEE-------TTEEEEEETTSCEE
T ss_pred eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE--EEEeCCCCCCeEEEEECC-------CCEEEEEECCCeEE
Confidence 99864 468999999999999999875443 233458999999999998 45699999999999
Q ss_pred EEEC
Q 003360 423 VLDS 426 (826)
Q Consensus 423 iwd~ 426 (826)
+|++
T Consensus 283 iW~i 286 (287)
T d1pgua2 283 RWNV 286 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.9e-23 Score=220.11 Aligned_cols=290 Identities=12% Similarity=0.123 Sum_probs=200.7
Q ss_pred CCEEEEEEeeCCCeEEEec-CC-cEEEeccCC---CceeecccccC-Cccee--eCC--CCCEEEEEECCCcEEEEeCCC
Q 003360 193 SSITAMKLITGNSFILSSA-DE-DYSLLAKSV---PPLLDFETKLK-DGSQS--HSK--VKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~-~i~~w~~~~---~~~~~~~~~h~-g~V~~--~s~--~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+++++|+|+++.++.++ +. .++.|+... .....+ .+|. ..|++ |+| ++++|+||+.||+|+|||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 4568899999999999876 33 466775432 234444 5664 56877 887 567999999999999999832
Q ss_pred -CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 263 -PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 263 -~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
... ..+.......+..|..+|.+++|+++++.|++++. ++.+++|++.++.. .
T Consensus 97 ~~~~---~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~---- 152 (325)
T d1pgua1 97 DKES---NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-----------------L---- 152 (325)
T ss_dssp EGGG---TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-----------------E----
T ss_pred Ccce---eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-----------------c----
Confidence 221 11111111223467789999999999999888765 67899999874432 1
Q ss_pred EEEeeccCCeEEEEEccCCCE-EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 340 VKVMKINGSIISLNMNRNSQH-LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~-lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.....|...|++++|+|++.+ +++++.||.|++||....+..........|...|.+++|+|. .+.+|++++.|
T Consensus 153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd-----~~~~l~s~~~d 227 (325)
T d1pgua1 153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-----SGEFVITVGSD 227 (325)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-----TCCEEEEEETT
T ss_pred eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc-----cceeccccccc
Confidence 233446788999999998865 678999999999999888877666656678889999999983 36889999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCc-ceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE-eecCcEEEE
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSR-ALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL-CSEKAACAY 496 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~-~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~se~~irv~ 496 (826)
+.|++||.++++++.++..|...... +.++.. +++.++++ +.|+.|+||
T Consensus 228 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-----------------------------~dg~~l~s~s~D~~i~iw 278 (325)
T d1pgua1 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-----------------------------LDSQKFATVGADATIRVW 278 (325)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-----------------------------SSSSEEEEEETTSEEEEE
T ss_pred cceeeeeeccccccccccccccccccceeeeec-----------------------------cCCCEEEEEeCCCeEEEE
Confidence 99999999999999887665543222 222221 12334455 456789999
Q ss_pred eccccccccceeeeeeecCC--CCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 497 SLSHAVQGVKKVLYKKKFHS--SSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~--~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
++. ..+.+....... ..+...+....+ ...++....||.|++|.|
T Consensus 279 d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 279 DVT-----TSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ETT-----TTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred ECC-----CCCEEEEEEecCCcccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence 997 344544433221 122222222212 334677788999999875
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.2e-22 Score=223.69 Aligned_cols=176 Identities=18% Similarity=0.175 Sum_probs=129.6
Q ss_pred CCEEEEEECCCcEEEEeCC-CCc-e-------eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 243 KNLFITGHSDGAINFWDVS-CPL-F-------LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s-~~~-~-------~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
+.++++++.||+|++||+. ... . .....+... ......+...+++++|+|++ +||+|+.||+|+|||+.
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~ 213 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccc-eecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence 4688999999999999972 111 0 000000000 11122344678999999997 89999999999999998
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe---EEEEecCCCeeEEeeec----
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY---VYLLDTEGPTVLYQKHI---- 386 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~---V~vwD~~~~~~l~~~~~---- 386 (826)
++... ..+. .. .....|..+|++|+|+|+|++|++|+.|++ |++||+.++.++.....
T Consensus 214 ~~~~~-----~~~~---~~-------~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~ 278 (393)
T d1sq9a_ 214 TLRPL-----YNFE---SQ-------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 278 (393)
T ss_dssp TTEEE-----EEEE---CC-------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred ccccc-----cccc---cc-------cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccc
Confidence 54221 0000 00 122346788999999999999999999974 99999999988765432
Q ss_pred ------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 387 ------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 387 ------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
..+|...|++++|+| |+++|++|+.|++|++||+.+|+++.++.+|...
T Consensus 279 ~~~~~~~~gH~~~V~~l~fsp------d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~ 333 (393)
T d1sq9a_ 279 SQASLGEFAHSSWVMSLSFND------SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333 (393)
T ss_dssp -----CCBSBSSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred ccceeeeecccCceeeeccCC------CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc
Confidence 246899999999999 6999999999999999999999999999887653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.6e-21 Score=207.62 Aligned_cols=332 Identities=13% Similarity=0.167 Sum_probs=215.6
Q ss_pred eeeecccCCCE-EEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 185 MLKMPFLDSSI-TAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 185 ~~~l~~h~~~V-t~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
..+|.+|...| +|+ ++++++|++|+ |++|++|+...........+|.+.|.+ |+++ .+|++|+.||+|++|+.
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45678998875 665 45688999998 999999986554433333789999999 8775 68999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc----eEEEeecCC-CCeE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS----FLSFTGSKK-GNSH 335 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~----~~~i~~s~~-~~~~ 335 (826)
....... ... ...+...+....+.+++..+++++.|+.|++|++.......... ......... ....
T Consensus 82 ~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T d1nexb2 82 KKGCCTH--VFE------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153 (355)
T ss_dssp TTTEEEE--EEC------CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred ccccccc--ccc------cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence 5554211 111 11233456677888999999999999999999998653321000 000011111 1111
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. .....+...|. .+.+++.+++++..|+.|++||+.+++.+... ..+...+.++.|++ ++.+++++
T Consensus 154 ~---~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~ 219 (355)
T d1nexb2 154 V---GVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDH------ERKRCISA 219 (355)
T ss_dssp E---EEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEET------TTTEEEEE
T ss_pred e---eeeeecccccc--ccccccceeeeecccceeeeeecccccceeee---eccccccccccccc------cceeeecc
Confidence 1 12222333444 45567889999999999999999999887544 36677889999998 48999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
+.|++|++||..++.++..+..|... +.++.+- .+.++..+.++.|++
T Consensus 220 ~~d~~i~i~d~~~~~~~~~~~~h~~~---v~~~~~~-----------------------------~~~l~~~~~dg~i~i 267 (355)
T d1nexb2 220 SMDTTIRIWDLENGELMYTLQGHTAL---VGLLRLS-----------------------------DKFLVSAAADGSIRG 267 (355)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSC---CCEEEEC-----------------------------SSEEEEECTTSEEEE
T ss_pred cccceEEeeecccccccccccccccc---ccccccc-----------------------------cceeeeeeccccccc
Confidence 99999999999999999887655432 2233221 123455556779999
Q ss_pred EeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc------cccceeecCCCCC
Q 003360 496 YSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET------SIRGFVYLTPKPN 569 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~------sl~~~~~~~~~~~ 569 (826)
|++... . ..+.........+++. ...+. +++...+|.|++|.+.+.+.+... .+.++.|.|
T Consensus 268 wd~~~~---~-~~~~~~~~~~~~~~~~----~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~---- 334 (355)
T d1nexb2 268 WDANDY---S-RKFSYHHTNLSAITTF----YVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---- 334 (355)
T ss_dssp EETTTC---C-EEEEEECTTCCCCCEE----EECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET----
T ss_pred cccccc---c-eecccccCCceEEEEE----cCCCC-EEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC----
Confidence 999742 1 1121111111111111 12233 445557999999999988776432 344566763
Q ss_pred CCcccceeccCCCcEEEEc
Q 003360 570 SLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 570 ~~~~~~~~~s~~G~i~~~~ 588 (826)
+ ...++.+.||++++|.
T Consensus 335 -~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 335 -K-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp -T-EEEEEEESSSCEEEEE
T ss_pred -C-eEEEEEECCCcEEEEE
Confidence 2 2345667888877664
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.9e-22 Score=216.03 Aligned_cols=205 Identities=9% Similarity=0.042 Sum_probs=148.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s 261 (826)
...|..+|++++|+++++.+++++ +..+.+|............+|.+.|.+ |+++++ ++++++.||+|++||..
T Consensus 111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 190 (325)
T d1pgua1 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190 (325)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence 456888999999999999998754 556788865443333333679999988 898876 57889999999999984
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
..... ..+. ....|...|++++|+|+ +.+|++|+.||.|++||++.+... .
T Consensus 191 ~~~~~--~~~~-----~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~---------------------~ 242 (325)
T d1pgua1 191 PFKFS--ASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL---------------------K 242 (325)
T ss_dssp TBEEE--EEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE---------------------E
T ss_pred ccccc--eecc-----cccCCCCccEEeeeccccceeccccccccceeeeeecccccc---------------------c
Confidence 33311 1111 12456788999999997 688999999999999998854321 1
Q ss_pred EEeeccCCeEEEEEc---cCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 341 KVMKINGSIISLNMN---RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s---~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.+..|..+|.++.|+ ++|.+|++|+.||.|+|||+++++++..... ..+...+..+.+.+. .+.+|++++.
T Consensus 243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~l~s~s~ 316 (325)
T d1pgua1 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL-DKQQLGNQQVGVVAT-----GNGRIISLSL 316 (325)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTTCGGGCEEEEEEE-----ETTEEEEEET
T ss_pred cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe-cCCcccCeEEEEEEC-----CCCEEEEEEC
Confidence 122334444444443 5788999999999999999999998855543 234444555555542 2568999999
Q ss_pred CCcEEEEEC
Q 003360 418 DSSVLVLDS 426 (826)
Q Consensus 418 Dg~V~iwd~ 426 (826)
||+|++||+
T Consensus 317 dg~i~vwdl 325 (325)
T d1pgua1 317 DGTLNFYEL 325 (325)
T ss_dssp TSCEEEEET
T ss_pred CCEEEEEEC
Confidence 999999995
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=6.8e-22 Score=208.82 Aligned_cols=308 Identities=9% Similarity=-0.005 Sum_probs=190.6
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
.|-.+.++..|++++| +|+|++||+|+.||+|++||+.+..... .+. ....+..||..+.|+..
T Consensus 4 v~~~~~h~d~I~~l~f-sp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------~~~-~~~~h~~~V~~v~f~~~-- 67 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKNV------------DLL-QSLRYKHPLLCCNFIDN-- 67 (342)
T ss_dssp EECSSCCSSCEEEEEE-EGGGTEEEEEETTSEEEEEEEETTTTEE------------EEE-EEEECSSCEEEEEEEES--
T ss_pred EEcCCCCCCCEEEEEE-eCCCCEEEEEECCCeEEEEEccCCCcce------------EEE-EecCCCCCEEEEEEeCC--
Confidence 3445567778999999 5899999999999999999987641100 000 01123457777777651
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++++| +.+|.+.+|+...-
T Consensus 68 -~~~~l~sg---------------------------------------------------------~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 68 -TDLQIYVG---------------------------------------------------------TVQGEILKVDLIGS 89 (342)
T ss_dssp -SSEEEEEE---------------------------------------------------------ETTSCEEEECSSSS
T ss_pred -CCCEEEEc---------------------------------------------------------ccccceeeeecccc
Confidence 12333333 34455556655431
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-ec---ccccCCcc--ee
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-DF---ETKLKDGS--QS 238 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~---~~~h~g~V--~~ 238 (826)
.........+........+.++...+++++ ++.+++|+....... .. ...+.... ..
T Consensus 90 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d1yfqa_ 90 ----------------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp ----------------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred ----------------cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeee
Confidence 111111223334445556677788888877 999999964321111 11 11111111 11
Q ss_pred --eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 --HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 --~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+.+.++.+++|+.||+|++||+............ ..+...+.+..+.+ ++..+++++.||.+.+|++...
T Consensus 154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE-------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred eeeeccCCceeeecCCCcEEEEecccCcccceeeee-------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence 6778899999999999999999433210100011 12234566666554 5689999999999999999765
Q ss_pred CCccccc-eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 316 PHAIENS-FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 316 ~~~~~~~-~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
....... .......+.. .....+...|++|+|+|++.+||+|+.||+|+|||+.+++.+.++. ..+ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~--~~~--~~ 295 (342)
T d1yfqa_ 227 GDDYNSSKRFAFRCHRLN-------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFN--ED 295 (342)
T ss_dssp CCSTTCTTCEEEECCCCC-------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCS--SS
T ss_pred cceeeccccceeeeeeec-------cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec--CCC--CC
Confidence 3221100 0000000000 0111235569999999999999999999999999999999885443 223 44
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..++|++ ++.+|++++.|.++++|...
T Consensus 296 ~~~~~s~------~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 296 SVVKIAC------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEEE------CSSEEEEEEECTHHHHCSSS
T ss_pred EEEEEEe------CCCEEEEEEcCCcEEEeeee
Confidence 5567777 58899999999988888654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.2e-20 Score=194.90 Aligned_cols=180 Identities=16% Similarity=0.277 Sum_probs=126.6
Q ss_pred EeeCCCeEEEec-CCcEEEeccCCCce---eecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 200 LITGNSFILSSA-DEDYSLLAKSVPPL---LDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 200 fs~~~~~l~~~~-d~~i~~w~~~~~~~---~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
+......++++. ++.+.+|+...... ......|...+.+.......+++++.|++|++||...... +..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~--~~~~---- 174 (293)
T d1p22a2 101 LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRTL---- 174 (293)
T ss_dssp EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--EEEE----
T ss_pred ccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcE--EEEE----
Confidence 445555666666 88899996543221 1113557777766555667899999999999999954442 1222
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 355 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s 355 (826)
..+...|..+.++ +..+++|+.||.|++||++..... .....+...|.+ ++
T Consensus 175 ----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~v~~--~~ 225 (293)
T d1p22a2 175 ----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL---------------------RVLEGHEELVRC--IR 225 (293)
T ss_dssp ----ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEE--EE
T ss_pred ----cccccccccccCC--CCeEEEecCCCEEEEEecccceee---------------------eeecccceeeee--cc
Confidence 3455678887776 468999999999999999844321 122233445554 55
Q ss_pred cCCCEEEEEecCCeEEEEecCCC---------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 356 RNSQHLAVGSDQGYVYLLDTEGP---------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 356 ~~g~~lasGs~dG~V~vwD~~~~---------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
+++.+|++|+.||.|++||+... .++. ...+|..+|++++|+ +.+|++|+.||+|++||
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~H~~~V~~v~~d--------~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR---TLVEHSGRVFRLQFD--------EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE---EECCCSSCCCCEEEC--------SSCEEECCSSSEEEEEC
T ss_pred ccceEEEEEcCCCEEEEEECCCCccccccCCceeeE---EecCCCCCEEEEEEc--------CCEEEEEecCCEEEEeC
Confidence 67789999999999999998542 2232 234788999999985 45799999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.3e-19 Score=186.19 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=189.6
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+..+.+|...|.+ +++++|++|++|+ |++|++|+...........+|.+.|.+ +++ ++|++|+.|+++++|+.
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNA 84 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccc
Confidence 34568899999865 4777899999998 999999987654443333789999999 665 59999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
....... .. ..+...+....+. ...++.+..|+.|.+|+...+.. .
T Consensus 85 ~~~~~~~--~~--------~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~----------------------~ 130 (342)
T d2ovrb2 85 ETGECIH--TL--------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC----------------------L 130 (342)
T ss_dssp TTTEEEE--EE--------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE----------------------E
T ss_pred cccccee--cc--------cccceeEeeeecc--cccccccccceeEEEeecccccc----------------------e
Confidence 5554211 01 1223455555444 45788899999999999985432 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
........ ....+.+....+++++.||.|++||.....++.... +|...+..+.+ ++.++++|+.||.
T Consensus 131 ~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~--------~~~~l~s~~~dg~ 198 (342)
T d2ovrb2 131 HVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF--------DGIHVVSGSLDTS 198 (342)
T ss_dssp EEEECCSS-CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE--------CSSEEEEEETTSC
T ss_pred eeeecccc-cceeeccccceeeeecCCCeEEEeecccceeeEEEc---CcccccccccC--------CCCEEEEEeCCCe
Confidence 11111111 222344556679999999999999999998885543 55555554444 4788999999999
Q ss_pred EEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccc
Q 003360 421 VLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
|++||..+++++..+..|.. .+.++.+-+ +.++..+.++.|++|++..
T Consensus 199 i~~~d~~~~~~~~~~~~~~~---~v~~~~~~~-----------------------------~~l~s~s~d~~i~iwd~~~ 246 (342)
T d2ovrb2 199 IRVWDVETGNCIHTLTGHQS---LTSGMELKD-----------------------------NILVSGNADSTVKIWDIKT 246 (342)
T ss_dssp EEEEETTTCCEEEEECCCCS---CEEEEEEET-----------------------------TEEEEEETTSCEEEEETTT
T ss_pred EEEeecccceeeeEeccccc---ceeEEecCC-----------------------------CEEEEEcCCCEEEEEeccc
Confidence 99999999999887654432 222332211 1244444566899999873
Q ss_pred cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc
Q 003360 501 AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET 556 (826)
Q Consensus 501 ~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~ 556 (826)
.+.................+ ..++..+++...+|.|+++.+...+.+.+.
T Consensus 247 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 247 -----GQCLQTLQGPNKHQSAVTCL-QFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp -----CCEEEEECSTTSCSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -----ccccccccccceeeeceeec-ccCCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence 22222221110111111101 124567788889999999999888777653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.8e-20 Score=195.67 Aligned_cols=252 Identities=12% Similarity=0.111 Sum_probs=166.5
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
...++.+|..+|++++|++ |++|+ |++|++|+.... ...|.+.|.+ +++ +..+++++.|++|++|+.
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~-~~~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCS-TTCCEEEETTTEEEETTE
T ss_pred eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecC-CCeEEEEeeccccccccc
Confidence 3456899999999999976 78888 999999986531 2578999988 554 456899999999999997
Q ss_pred CCCce----eeee-----------------ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEeCCCCCc
Q 003360 261 SCPLF----LLIL-----------------SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHA 318 (826)
Q Consensus 261 s~~~~----~~i~-----------------~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~~~~~~~ 318 (826)
..... ..+. .+.......+..........++++++..+++++.++ .|++|++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~- 153 (287)
T d1pgua2 75 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV- 153 (287)
T ss_dssp EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE-
T ss_pred cccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce-
Confidence 32110 0000 000000000000001122345566666777766664 577777652110
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
.. .....+.++|++++|+|++.+|++|+.||.|++||+.++..+. .....|..+|.+++
T Consensus 154 ---------------~~----~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~ 212 (287)
T d1pgua2 154 ---------------SF----DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--SRWAFRTSKINAIS 212 (287)
T ss_dssp ---------------EE----ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEE
T ss_pred ---------------ee----eeeeccCCceeEEEeccCccccccccccccccceeeccccccc--ccccccccccceee
Confidence 00 1112346789999999999999999999999999999988773 33357889999999
Q ss_pred Eeeccc----CCCCCcEEEEEECCCcEEEEECCCC-ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCC
Q 003360 399 FETCSL----QGFEKNFLVIATKDSSVLVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473 (826)
Q Consensus 399 f~~~~~----~~~d~~~l~sgs~Dg~V~iwd~~tg-~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (826)
|+|... ...++.+|++|+.|++|++||+.++ +.+..+..|. ..+.++.+.
T Consensus 213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~---~~V~~v~~~---------------------- 267 (287)
T d1pgua2 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK---DGVNNLLWE---------------------- 267 (287)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST---TCEEEEEEE----------------------
T ss_pred ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC---CCeEEEEEC----------------------
Confidence 988421 1235789999999999999998764 4554433333 334444433
Q ss_pred CCCCCCCCCCEEEEeecCcEEEEec
Q 003360 474 PKENAVPKQWFVLLCSEKAACAYSL 498 (826)
Q Consensus 474 ~~~~~~~~~~~vv~~se~~irv~sl 498 (826)
+++.++.++.|+.||+|++
T Consensus 268 ------~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 ------TPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp ------ETTEEEEEETTSCEEEEEE
T ss_pred ------CCCEEEEEECCCeEEEEEE
Confidence 2334666667779999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.3e-18 Score=179.29 Aligned_cols=268 Identities=14% Similarity=0.190 Sum_probs=182.5
Q ss_pred cccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003360 230 TKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 230 ~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~i 309 (826)
..|..+|+|+++++++||||+.||+|+|||+..... +..+ ..|..+|++|+| ++++|++|+.||.|++
T Consensus 12 ~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~--~~~l--------~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 12 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--KRIL--------TGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE--EEEE--------CCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcE--EEEE--------ecCCCCEeeeec--ccceeecccccccccc
Confidence 568899999888999999999999999999954432 2223 478899999887 5679999999999999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~ 389 (826)
|++..+.. ..... ........+.+....++++..++.+++||...............
T Consensus 80 ~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 80 WDVNTGEM----------------------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp EESSSCCE----------------------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred cccccccc----------------------ccccc-ccccccccccccccceeecccccceeEeeccccccccccccccc
Confidence 99985432 11111 11222334455566899999999999999988765544444456
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccc
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGM 469 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~ 469 (826)
|...|..+.+. ...+++++.|+.|++||..+++++..+..+... +..+.+-
T Consensus 137 ~~~~v~~~~~~--------~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~---v~~~~~~------------------ 187 (293)
T d1p22a2 137 HRAAVNVVDFD--------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG---IACLQYR------------------ 187 (293)
T ss_dssp CSSCEEEEEEE--------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---EEEEEEE------------------
T ss_pred cccccccceec--------ccccccccCCCceeeecCCCCcEEEEEcccccc---cccccCC------------------
Confidence 77788777765 456889999999999999999998876544321 2222111
Q ss_pred cCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCC
Q 003360 470 NKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 470 ~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~ 549 (826)
...++..+.++.|++|++. ..+.+.........+.. .......|+....+|.|+++.++.
T Consensus 188 -----------~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~v~~----~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 188 -----------DRLVVSGSSDNTIRLWDIE-----CGACLRVLEGHEELVRC----IRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp -----------TTEEEEEETTSCEEEEETT-----TCCEEEEECCCSSCEEE----EECCSSEEEEEETTSCEEEEEHHH
T ss_pred -----------CCeEEEecCCCEEEEEecc-----cceeeeeecccceeeee----ccccceEEEEEcCCCEEEEEECCC
Confidence 1235555667899999997 33344433322111111 124566788889999999998754
Q ss_pred cccccc--------------ccccceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 550 LSLLKE--------------TSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 550 L~~l~~--------------~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
...... ..+.++.|. ....++.+.||.|.+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-------~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFD-------EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEEC-------SSCEEECCSSSEEEEEC
T ss_pred CccccccCCceeeEEecCCCCCEEEEEEc-------CCEEEEEecCCEEEEeC
Confidence 332211 123344443 24678888899999885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.3e-19 Score=198.89 Aligned_cols=277 Identities=15% Similarity=0.115 Sum_probs=173.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-----eec-ccccCCccee---------eCCCCCEEEEEEC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL-----LDF-ETKLKDGSQS---------HSKVKNLFITGHS 251 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~-----~~~-~~~h~g~V~~---------~s~~~~~l~Tgs~ 251 (826)
...|...|.+++++ ++++++++ |++|++|+...... ... ...|..++.. ...++.++++++.
T Consensus 10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 47899999999875 47899988 99999997432110 111 1234544322 1223457889999
Q ss_pred CCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 252 DGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-----SRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 252 DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-----~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
||+|++|+. .......+...... ......+...+..++|.++ +.++++++.||+|++|++..........
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~--- 163 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--- 163 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT---
T ss_pred CCcEEEEEccCCCceeeeeccccc-eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee---
Confidence 999999998 22221111111100 1112234467888888876 3689999999999999987442110000
Q ss_pred EeecCCC-CeEEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec---ccCCCCCeeEEEE
Q 003360 326 FTGSKKG-NSHIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI---ASDISSGIVSLQF 399 (826)
Q Consensus 326 i~~s~~~-~~~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~---~~~~~~~V~sl~f 399 (826)
.... ....+.. .....+...+++++|+|++ +||+|+.||+|+|||+.+++.++.... ..+|..+|.+++|
T Consensus 164 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 164 ---TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239 (393)
T ss_dssp ---TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ---eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence 0000 0000000 0111224558999999998 899999999999999999988865543 3468899999999
Q ss_pred eecccCCCCCcEEEEEECCCc---EEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccC-CCCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSS---VLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNK-GSPK 475 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~---V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 475 (826)
+| |+.+|++|+.|++ |++||..+|+++.++........ .+. ...++.. ...+
T Consensus 240 sp------dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~---~~~---------------~~~gH~~~V~~l 295 (393)
T d1sq9a_ 240 SP------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ---ASL---------------GEFAHSSWVMSL 295 (393)
T ss_dssp CS------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------------------CCBSBSSCEEEE
T ss_pred cc------ccceeeeecCCCCcceeeecccccceeeeeecccccccc---cee---------------eeecccCceeee
Confidence 99 6999999999874 89999999999887632211100 000 0000100 0111
Q ss_pred CCCCCCCCEEEEeec-CcEEEEecc
Q 003360 476 ENAVPKQWFVLLCSE-KAACAYSLS 499 (826)
Q Consensus 476 ~~~~~~~~~vv~~se-~~irv~sl~ 499 (826)
.|++++.+|+.++. +.||||++.
T Consensus 296 -~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 296 -SFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp -EECSSSSEEEEEETTSEEEEEETT
T ss_pred -ccCCCCCeeEEECCCCEEEEEECC
Confidence 35566677777765 599999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=2e-18 Score=181.74 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=151.0
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeec--ccccCCccee--eCCC-CCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDF--ETKLKDGSQS--HSKV-KNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~--~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD 259 (826)
.+..|+..|++++|+|++++|++++ |++|++|+.... ....+ ..+|.+.|.+ |+++ +.+|++|+.||+|++|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 3578999999999999999999998 999999964321 11111 2469999998 8775 56899999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
........ ... ..+........+.++...+++++.++++++||++...... .....
T Consensus 86 ~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~----~~~~~----------- 141 (342)
T d1yfqa_ 86 LIGSPSFQ--ALT-------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV----IAVKN----------- 141 (342)
T ss_dssp SSSSSSEE--ECB-------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC----EEEEE-----------
T ss_pred cccccccc--ccc-------ccccccccccccccccccccccccccccceeeccccccce----eeecc-----------
Confidence 94443211 111 1223445566777888999999999999999987443211 00000
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
............+.+.+.+..+++|+.||.|++||++.................+.+..+.+. ++..+++++.||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg 216 (342)
T d1yfqa_ 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK-----EQEGYACSSIDG 216 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG-----GGCEEEEEETTS
T ss_pred cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC-----CCCEEEeecCCC
Confidence 000011233556677888889999999999999999877655333333345556666666553 578899999999
Q ss_pred cEEEEECCCC
Q 003360 420 SVLVLDSDNG 429 (826)
Q Consensus 420 ~V~iwd~~tg 429 (826)
.+.+|+....
T Consensus 217 ~~~v~~~~~~ 226 (342)
T d1yfqa_ 217 RVAVEFFDDQ 226 (342)
T ss_dssp EEEEEECCTT
T ss_pred eEEEEEecCC
Confidence 9999998754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=1.2e-18 Score=186.54 Aligned_cols=225 Identities=10% Similarity=0.064 Sum_probs=155.7
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE----------CCC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH----------SDG 253 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs----------~DG 253 (826)
.+..|...|.+++|+|+++++++++ ++.+.+|+............|...+.+ |+|++++|+.++ .++
T Consensus 80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 3567888999999999999999988 899999977655544444567777766 999999998654 345
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc--cccceEEEee---
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--IENSFLSFTG--- 328 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~--~~~~~~~i~~--- 328 (826)
.+++||........ +..+...+..++|+|+++.|++++.++.+++|+....... ....+..+..
T Consensus 160 ~~~v~d~~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 228 (360)
T d1k32a3 160 AIHVYDMEGRKIFA-----------ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228 (360)
T ss_dssp EEEEEETTTTEEEE-----------CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred ceeeeccccCceee-----------ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccC
Confidence 69999996554211 1235567889999999999999999999999987644211 0111111211
Q ss_pred -------cCCCCeE------------EEEE--------EEEeeccCCeEEEEEccCC---CEEEEEecCCeEEEEecCCC
Q 003360 329 -------SKKGNSH------------IIHS--------VKVMKINGSIISLNMNRNS---QHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 329 -------s~~~~~~------------~~~~--------~~~~~~~~~V~~l~~s~~g---~~lasGs~dG~V~vwD~~~~ 378 (826)
+.++... .+.. .....+.+.+..+.+...+ .+++.++.++.|++||+.++
T Consensus 229 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 308 (360)
T d1k32a3 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308 (360)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred ccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence 1111000 0000 1111223334444444333 35677888999999999988
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
++. .+...|.+++|+| |+.+|++++.||.|++||+.+|+...++
T Consensus 309 ~~~-------~~~~~v~~~~~Sp------DG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 309 KVT-------EVKNNLTDLRLSA------DRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp CEE-------EEEEEEEEEEECT------TSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred eEE-------EecCCcCEEEECC------CCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 754 2334688999999 7999999999999999999999877664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=5.5e-17 Score=173.37 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=151.4
Q ss_pred EEEee-CCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC--cEEEEeCCCCceeeeeecc
Q 003360 198 MKLIT-GNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG--AINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 198 ~~fs~-~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG--tVriWD~s~~~~~~i~~l~ 272 (826)
-.||| ||+.+++++++.+.+|+........ .+|.+.|.+ |+|+|+.|++++.|. .|++||+.+....
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~------ 79 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE------ 79 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE------
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE------
Confidence 56999 9999999998999999876655554 368999988 999999998776653 7999999665521
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
.+..|...|.+++|+|++++|++++.++.+++|++..+.. . .....+...+.++
T Consensus 80 -----~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~~~ 133 (360)
T d1k32a3 80 -----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-----------------T----VIERSREAMITDF 133 (360)
T ss_dssp -----ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------E----EEEECSSSCCCCE
T ss_pred -----EeeCCCceEEeeeecccccccceeccccccccccccccce-----------------e----eeeecccccccch
Confidence 1235778999999999999999999999999999974432 1 2233456678999
Q ss_pred EEccCCCEEEEEe----------cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 353 NMNRNSQHLAVGS----------DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 353 ~~s~~g~~lasGs----------~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+|+|+|++||.+. .++.+++||+.++..... ..+...+..+.|++ |+..|++++.|+.+.
T Consensus 134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~----~~~~~~~~~~~~sp------dg~~l~~~s~~~~~~ 203 (360)
T d1k32a3 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA----TTENSHDYAPAFDA------DSKNLYYLSYRSLDP 203 (360)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC----SCSSSBEEEEEECT------TSCEEEEEESCCCCC
T ss_pred hhccceeeeeeeccccccceeeccccceeeeccccCceeee----cccccccccccccC------CCCEEEEEeCCCceE
Confidence 9999999998654 455799999998876622 24566788899998 699999999999999
Q ss_pred EEECCCCce
Q 003360 423 VLDSDNGNM 431 (826)
Q Consensus 423 iwd~~tg~~ 431 (826)
+|+......
T Consensus 204 ~~d~~~~~~ 212 (360)
T d1k32a3 204 SPDRVVLNF 212 (360)
T ss_dssp EECSSSSCE
T ss_pred cccccccce
Confidence 999875543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.65 E-value=1.9e-14 Score=159.14 Aligned_cols=269 Identities=12% Similarity=0.071 Sum_probs=172.0
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++....+|.+.+||..+. +...+++.|. .+..++|+|||+++++++ |+++++|+.....
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~-----------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSK-----------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp EEEEEETTTTEEEEEETTTC-----------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred EEEEEEcCCCEEEEEECCCC-----------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence 34455667899999998771 1334466664 589999999999999988 9999999765433
Q ss_pred ee---ec--ccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccc----------------------
Q 003360 225 LL---DF--ETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQ---------------------- 274 (826)
Q Consensus 225 ~~---~~--~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~---------------------- 274 (826)
.. .+ ..+|.+.+.+ |+|||+++ ++++.++++++||...............
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~ 174 (426)
T d1hzua2 95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174 (426)
T ss_dssp CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence 21 11 2345555655 99999976 5566899999999844332111110000
Q ss_pred -------------------ccc----ccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCc---------ccc
Q 003360 275 -------------------SEK----DFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHA---------IEN 321 (826)
Q Consensus 275 -------------------~~~----~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~---------~~~ 321 (826)
... ....++..+..+.|+|++++++++.. +..+.+|+...+... +..
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (426)
T d1hzua2 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254 (426)
T ss_dssp SEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred CEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence 000 00123356678899999988777765 456788887755210 000
Q ss_pred -----------ceEEEeecCCCCeEEEEE-------------EEEeeccCCeEEEEEccCCCEEEE-------EecCCeE
Q 003360 322 -----------SFLSFTGSKKGNSHIIHS-------------VKVMKINGSIISLNMNRNSQHLAV-------GSDQGYV 370 (826)
Q Consensus 322 -----------~~~~i~~s~~~~~~~~~~-------------~~~~~~~~~V~~l~~s~~g~~las-------Gs~dG~V 370 (826)
.+.....+.++....... .....|...|..++|+|++.+|++ |+.|++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv 334 (426)
T d1hzua2 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 334 (426)
T ss_dssp CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence 011111222221110000 223345567999999999999994 5678999
Q ss_pred EEEecCCCeeEEeeec------ccCCCCCeeEEEEeecccCCCCCcEEEEE-----ECCCcEEEEECCCCceEEeeecc
Q 003360 371 YLLDTEGPTVLYQKHI------ASDISSGIVSLQFETCSLQGFEKNFLVIA-----TKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 371 ~vwD~~~~~~l~~~~~------~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-----s~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|||+.++++.++... ...+...|.+++|+| ||.++++. +.++.|+|||..|++....+...
T Consensus 335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp------DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS------SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC------CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 9999998876643321 224566799999999 78877543 25788999999999988775433
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=1.3e-14 Score=161.08 Aligned_cols=325 Identities=8% Similarity=0.015 Sum_probs=199.8
Q ss_pred ccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc-eEEE
Q 003360 14 KQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS-RLYI 92 (826)
Q Consensus 14 ~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g-~lli 92 (826)
..++.+++ +|||++|++++.||.|.+||+.++..... ..+.... .-..+.|......+| .|++
T Consensus 62 ~~~~~v~f-SpDG~~l~~~s~dg~v~~~d~~t~~~~~~----------~~i~~~~-----~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 62 YAVHISRL-SASGRYLFVIGRDGKVNMIDLWMKEPTTV----------AEIKIGS-----EARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp SCEEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCCEE----------EEEECCS-----EEEEEEECCSTTCTTTEEEE
T ss_pred CCeeEEEE-CCCCCEEEEEcCCCCEEEEEeeCCCceEE----------EEEecCC-----CCCCeEEecccCCCCCEEEE
Confidence 47899998 79999999999999999999988621111 0011000 011223333333455 4566
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEee--------cCCCceeeEEEecCCCCCCCCCCce-EEEeccCccEEEecch
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLAL--------PLSEPCIDMEIISSSSDPNKPKQDS-FLLLGKSGHFYAFDDC 163 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l--------~~~~~~~d~~~l~~~~~~~~~~~~~-liv~~~~G~l~~~d~~ 163 (826)
.+.. ...+.++............... ...+....+.. .++... ++.+...|++.++|..
T Consensus 126 s~~~----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 126 GAYW----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--------SHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp EEEE----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--------CSSSSEEEEEETTTTEEEEEETT
T ss_pred EcCC----CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE--------CCCCCEEEEEEccCCeEEEEEcc
Confidence 6654 2345566554443322221111 01111111111 122233 3445566888888765
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-----ccccCCcc
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-----ETKLKDGS 236 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-----~~~h~g~V 236 (826)
.. ......--.+...+..++|+|+++++++++ +..+.+++......... ...|....
T Consensus 194 ~~----------------~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~ 257 (432)
T d1qksa2 194 DL----------------NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257 (432)
T ss_dssp CS----------------SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred CC----------------CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence 41 111111113456788999999999988877 55677776544333222 11233333
Q ss_pred ee--eCCCCCEEEEEE-CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 237 QS--HSKVKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 237 ~~--~s~~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
.. +...+...++.+ .|++|.+|+...... ..|...|....++|++..+++++.+..+++|...
T Consensus 258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~--------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~ 323 (432)
T d1qksa2 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGH--------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 323 (432)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred cceecCCCCceecccccCCceEEecccccccc--------------cccccEEEEEEEcCCCCeEEEEecCCccceeecc
Confidence 33 444555565554 388999999744331 1345678899999999999999999999999875
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
.... +.....++++ ||++.+++|+.|+.+++||+.++..+ ..|...
T Consensus 324 ~~~~---------------------------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l------~~~~~~ 369 (432)
T d1qksa2 324 TLNP---------------------------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI------TEGQPR 369 (432)
T ss_dssp TTCS---------------------------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC------CSSCCE
T ss_pred cCCC---------------------------CCCeeeEEEE-EechhhcccccCCceEeccccccccc------CCCCCc
Confidence 3211 0111223444 89999999999999999998665444 256667
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-----CCCcEEEEECCCCceEEeee
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-----KDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-----~Dg~V~iwd~~tg~~i~~~~ 436 (826)
|.+++|++ ||.+++++. .+|.|+|||..|++....+.
T Consensus 370 v~~~~fS~------DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~ 411 (432)
T d1qksa2 370 VVQGEFNK------DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 411 (432)
T ss_dssp EEEEEECT------TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEeEECC------CCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence 89999999 798886664 46889999999999877653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.61 E-value=5.6e-13 Score=137.88 Aligned_cols=250 Identities=11% Similarity=0.126 Sum_probs=167.8
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCcee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~ 226 (826)
+....+|.|.+||..+. +....++.. ..+..++|+|+|+++++ +. ++.|.+|+.......
T Consensus 6 V~~~~~~~v~v~D~~t~-----------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~ 67 (301)
T d1l0qa2 6 IANSESDNISVIDVTSN-----------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67 (301)
T ss_dssp EEETTTTEEEEEETTTT-----------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEECCCCEEEEEECCCC-----------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee
Confidence 34467789999998762 122223332 45678999999998865 44 889999987654433
Q ss_pred ecccccCCccee-eCCCCCE-EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeC
Q 003360 227 DFETKLKDGSQS-HSKVKNL-FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQ 303 (826)
Q Consensus 227 ~~~~~h~g~V~~-~s~~~~~-l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~ 303 (826)
.....+...... +++++.. ++++..++.+++||...... +..+. +...+.++.|+|++..++ ++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~dg~~~~~~~~~ 136 (301)
T d1l0qa2 68 ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVK---------TGKSPLGLALSPDGKKLYVTNNG 136 (301)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---------CSSSEEEEEECTTSSEEEEEETT
T ss_pred eeeeccccccccccccccccccccccccceeeeccccccee--eeecc---------ccccceEEEeecCCCeeeeeecc
Confidence 321223332222 8888885 45566778999999955542 12222 335678999999998775 5556
Q ss_pred CCcEEEEEeCCCCCc----cccceEEEeecCCCCeEEEEE----------------EEEeeccCCeEEEEEccCCCEEEE
Q 003360 304 SGMVRIFKLKYEPHA----IENSFLSFTGSKKGNSHIIHS----------------VKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 304 dg~V~iwd~~~~~~~----~~~~~~~i~~s~~~~~~~~~~----------------~~~~~~~~~V~~l~~s~~g~~las 363 (826)
++.+.+|+..+.... .......+.+++++....+.. .........+..++|++++..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 216 (301)
T d1l0qa2 137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEE
T ss_pred ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccccccccc
Confidence 788999998866321 122344555555543322111 222333455788999999998876
Q ss_pred Eec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE-EEECCCcEEEEECCCCceEEeeec
Q 003360 364 GSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 364 Gs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+.. +++|++||+.+++++.... +...+..++|+| |+.+|+ +++.|++|++||..+++.+.++.+
T Consensus 217 ~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~va~sp------dg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 217 TNVDKYFNTVSMIDTGTNKITARIP----VGPDPAGIAVTP------DGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEEE----CCSSEEEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccceeeeeeeeecCCCeEEEEEc----CCCCEEEEEEeC------CCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 653 4689999999999885543 234688999999 688775 666789999999999999988754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=1.4e-13 Score=144.62 Aligned_cols=252 Identities=9% Similarity=0.015 Sum_probs=167.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~ 223 (826)
.++++.+.++.|.+||..+.+ ....+.++.+...+..++|+|||+++++ ++ ++.|.+|+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~---------------~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~ 66 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA---------------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE---------------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEEcCCCEEEEEECCCCe---------------EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 467888899999999998721 1112223444566788999999998865 55 899999987654
Q ss_pred ceeecccccCCc-----cee--eCCCCCEEEEEEC------------CCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 224 PLLDFETKLKDG-----SQS--HSKVKNLFITGHS------------DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 224 ~~~~~~~~h~g~-----V~~--~s~~~~~l~Tgs~------------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
........+... +.. ++|++++++++.. ++.+.+||...... +..+ .+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~---------~~~~ 135 (337)
T d1pbyb_ 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAF---------EAPR 135 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEE---------ECCS
T ss_pred cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEec---------cccC
Confidence 443321222211 222 8999999988874 56778888854442 1111 1335
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc--------------ccc--------------eEEEeecCCCC---
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI--------------ENS--------------FLSFTGSKKGN--- 333 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~--------------~~~--------------~~~i~~s~~~~--- 333 (826)
.++.++|+|+++++++++.+ +.+||...+.... .+. ........+..
T Consensus 136 ~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T d1pbyb_ 136 QITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp SCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred CceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceee
Confidence 67889999999999998755 6778887551100 000 00000000000
Q ss_pred ------eEEEE--------EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 334 ------SHIIH--------SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 334 ------~~~~~--------~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
...+. ......+...+.++++++++.+++.+ ++.|++||+.+++++.... +...+.+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~ 287 (337)
T d1pbyb_ 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNV 287 (337)
T ss_dssp GGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEE
T ss_pred ecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc----CCCCEEEEEE
Confidence 00000 02233445568888999999887765 5789999999999986553 3456889999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+| |+.+|++++.|++|++||..+++.+.++..
T Consensus 288 s~------dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 288 ST------DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CT------TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CC------CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 99 799999999999999999999999988643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=7.1e-13 Score=146.70 Aligned_cols=240 Identities=8% Similarity=0.034 Sum_probs=155.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++....+|.+.+||..+. .....++.|. .+..++|+|||+++++++ |+.+.+|+.....
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~-----------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~ 94 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTY-----------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94 (432)
T ss_dssp EEEEEETTTTEEEEEETTTC-----------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred EEEEEEcCCCEEEEEECCCC-----------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence 34567788899999998761 1334456664 689999999999999988 9999999754322
Q ss_pred ---eeec--ccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccc-cccCCCCeEEEEEeCCC
Q 003360 225 ---LLDF--ETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKD-FSLSGIPLTALYYDGTS 295 (826)
Q Consensus 225 ---~~~~--~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~-~~~h~~~V~~l~fsp~~ 295 (826)
.... ...|.+.+.+ |+|||++| ++++.|++|++||................... ...+......+.++|++
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg 174 (432)
T d1qksa2 95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174 (432)
T ss_dssp CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence 1111 1345566666 89999965 78999999999999544432222211111111 11234677889999999
Q ss_pred CEEE-EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEE
Q 003360 296 RVLV-SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLL 373 (826)
Q Consensus 296 ~~La-sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vw 373 (826)
..++ +...++.|.+|+..... ... +........+.+++|+|+|+++++++. ++.+.+|
T Consensus 175 ~~~~vs~~~~~~i~~~d~~~~~-----------------~~~---~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~ 234 (432)
T d1qksa2 175 PEFIVNVKETGKILLVDYTDLN-----------------NLK---TTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 234 (432)
T ss_dssp SEEEEEETTTTEEEEEETTCSS-----------------EEE---EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CEEEEEEccCCeEEEEEccCCC-----------------cce---EEEEcccCccccceECCCCCEEEEeccccceEEEe
Confidence 8765 55667899999987322 111 333344556889999999998777664 5689999
Q ss_pred ecCCCeeEEeeecccC--CCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCC
Q 003360 374 DTEGPTVLYQKHIASD--ISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNG 429 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~--~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg 429 (826)
|..+.+.+........ +........+.. .+....+.. .++.|.+|...+.
T Consensus 235 d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPT------FGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEEEETT------TEEEEEEEBSSSSEEEEEECCTT
T ss_pred ecccceEEEEeccCccccccCcccceecCC------CCceecccccCCceEEecccccc
Confidence 9999888754433211 222333333322 133333332 3788999987643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.54 E-value=3.8e-13 Score=148.44 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=140.8
Q ss_pred EEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 207 ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 207 l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
++++. |+.|++|+............| ..+.+ |+|||+++++++.||+|++||+.......+..++. ...|.
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~-----~~~~~ 108 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----GIEAR 108 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----CSEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC-----CCCCc
Confidence 34566 899999987665544331223 34555 99999999999999999999995444323333331 12344
Q ss_pred CCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCc----------------cccceEEEeecCCCCeEEEEE-------
Q 003360 284 IPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHA----------------IENSFLSFTGSKKGNSHIIHS------- 339 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~----------------~~~~~~~i~~s~~~~~~~~~~------- 339 (826)
..+.+++|+||+++|+++ ..++.|++||...+... .......+..+.++....+..
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~ 188 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 567778889999987555 57899999998876321 011122333444443221110
Q ss_pred -----------EEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeec---------------------
Q 003360 340 -----------VKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHI--------------------- 386 (826)
Q Consensus 340 -----------~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~--------------------- 386 (826)
+....+...+..+.|+|++++++++. .+..+.+||...++++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T d1hzua2 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW 268 (426)
T ss_dssp EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence 22334455688999999999887776 456688888877665422110
Q ss_pred ------------------------------ccCCCCCeeEEEEeecccCCCCCcEEEE-------EECCCcEEEEECCCC
Q 003360 387 ------------------------------ASDISSGIVSLQFETCSLQGFEKNFLVI-------ATKDSSVLVLDSDNG 429 (826)
Q Consensus 387 ------------------------------~~~~~~~V~sl~f~~~~~~~~d~~~l~s-------gs~Dg~V~iwd~~tg 429 (826)
..+|...+..++|+| |+.+|++ +..|++|+|||..++
T Consensus 269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP------dg~~l~v~~~~~~s~~~~~tv~vwd~~t~ 342 (426)
T d1hzua2 269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP------KSSHLYVDTTFNPDARISQSVAVFDLKNL 342 (426)
T ss_dssp EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT------TCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC------CCceEEEeecCCCCcccCCEEEEEECCCC
Confidence 123445577778887 6888885 445789999999999
Q ss_pred ceEEee
Q 003360 430 NMLSTN 435 (826)
Q Consensus 430 ~~i~~~ 435 (826)
+...++
T Consensus 343 ~~~~~~ 348 (426)
T d1hzua2 343 DAKYQV 348 (426)
T ss_dssp TSCCEE
T ss_pred CcCeEE
Confidence 876553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.49 E-value=2.5e-11 Score=125.18 Aligned_cols=270 Identities=10% Similarity=0.061 Sum_probs=163.6
Q ss_pred EEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEE
Q 003360 29 VAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVL 108 (826)
Q Consensus 29 latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~ 108 (826)
.+++..||+|.+||+.++...+. +.++. . ...+.+. +.+..||++++.+ ..+.++.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~------------i~~g~----~-p~~va~s---pdG~~l~v~~~~~----~~i~v~d 60 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTAT------------IPVGS----N-PMGAVIS---PDGTKVYVANAHS----NDVSIID 60 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE------------EECSS----S-EEEEEEC---TTSSEEEEEEGGG----TEEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEE------------EECCC----C-ceEEEEe---CCCCEEEEEECCC----CEEEEEE
Confidence 35677899999999998732221 11111 1 2334443 2334577776542 3455555
Q ss_pred cccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeee
Q 003360 109 LNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKM 188 (826)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l 188 (826)
+.... ....+ +.......+.+.+.. ...++.....+.+.+|+.... .....+
T Consensus 61 ~~t~~--~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 112 (301)
T d1l0qa2 61 TATNN--VIATV--PAGSSPQGVAVSPDG-------KQVYVTNMASSTLSVIDTTSN-----------------TVAGTV 112 (301)
T ss_dssp TTTTE--EEEEE--ECSSSEEEEEECTTS-------SEEEEEETTTTEEEEEETTTT-----------------EEEEEE
T ss_pred CCCCc--eeeee--ecccccccccccccc-------ccccccccccceeeecccccc-----------------eeeeec
Confidence 44332 22122 222333333332211 223334445567777776551 112222
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC-CcEEEEeCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD-GAINFWDVSCP 263 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D-GtVriWD~s~~ 263 (826)
.+...+.++.|++++..++.+. +..+.+|+......... ..+...... +++++..++++..+ +.+.+|+....
T Consensus 113 -~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T d1l0qa2 113 -KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (301)
T ss_dssp -ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred -cccccceEEEeecCCCeeeeeeccccceeeeeccccceeee-cccCCCceEEEeeccccceeeecccccccccccccce
Confidence 3445678899999999887655 77888886655433332 233344444 89999888777765 56667777555
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... .+ .....+..++|++++..++++.. ++.|.+||..++.. +
T Consensus 191 ~~~~--~~---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~----------------------~ 237 (301)
T d1l0qa2 191 SVID--TV---------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI----------------------T 237 (301)
T ss_dssp EEEE--EE---------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE----------------------E
T ss_pred eeee--cc---------cccCCcceeeccccccccccccccceeeeeeeeecCCCeE----------------------E
Confidence 4211 11 12346788999999998876643 46899999974422 3
Q ss_pred EEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCCeeEEeee
Q 003360 341 KVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
........+.+++|+|+|++| ++++.|++|++||+.+++++.+..
T Consensus 238 ~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 333445678999999999977 577789999999999999886554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=2.3e-11 Score=127.29 Aligned_cols=285 Identities=11% Similarity=0.013 Sum_probs=166.6
Q ss_pred CeEEEec-CCcEEEeccCCCceee-cccccC-Cccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccc
Q 003360 205 SFILSSA-DEDYSLLAKSVPPLLD-FETKLK-DGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKD 278 (826)
Q Consensus 205 ~~l~~~~-d~~i~~w~~~~~~~~~-~~~~h~-g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~ 278 (826)
+++++++ |+.|.+|+........ +..+.. ..+.+ ++|||+++ ++++.||.|.+||+..... +..+... .
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~---~ 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLS---T 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECC---B
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecC---C
Confidence 3677877 9999999877654433 322333 33334 99999976 6778899999999944442 2222211 0
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCC------------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQS------------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~d------------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
...+...+..++|+|+++.++++..+ ..+.+||..... . .......
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------------~-----~~~~~~~ 134 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----------------R-----RKAFEAP 134 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----------------E-----EEEEECC
T ss_pred CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-----------------E-----EEecccc
Confidence 11122455689999999999888754 455555555221 1 3344456
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC---eeEEEEeecccC-----------CCCCcEE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG---IVSLQFETCSLQ-----------GFEKNFL 412 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~---V~sl~f~~~~~~-----------~~d~~~l 412 (826)
..+.+++|+|+|.++++++.+ +.+||..++++............. .....+.+.... ..+....
T Consensus 135 ~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T d1pbyb_ 135 RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence 678899999999999998755 678999999887655432111000 000111110000 0001111
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
..++.++.+.+|+..++......... .......+. +.++..++ .+.++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------------------~~~~~~~~-~~~~~~ 261 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRI--MDVFYFSTA----------------------------VNPAKTRA-FGAYNV 261 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEE--CSSCEEEEE----------------------------ECTTSSEE-EEEESE
T ss_pred eecccCccEEEEEcCCCcEEEEEecC--CCcceEEEE----------------------------ecccceEE-EEcccc
Confidence 12233446888888887755432111 111111111 12233444 445789
Q ss_pred EEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccccc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETS 557 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~s 557 (826)
+++|++. ..+.+..........+ +..++.+..|++...+|.|.++.+..++.+.++.
T Consensus 262 i~v~d~~-----~~~~~~~~~~~~~~~~---~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 262 LESFDLE-----KNASIKRVPLPHSYYS---VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEETT-----TTEEEEEEECSSCCCE---EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEECC-----CCcEEEEEcCCCCEEE---EEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 9999998 5556666554322222 1223667777788899999999999999888853
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.8e-11 Score=124.41 Aligned_cols=258 Identities=8% Similarity=0.072 Sum_probs=159.6
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-c
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP-P 224 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~-~ 224 (826)
++....++.+++|+...- ........-.|...|+.++|+|||++|+++. |+.|.+|+.... .
T Consensus 7 ~v~~~~~~~I~v~~~~~~---------------~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~ 71 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHE---------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 71 (333)
T ss_dssp EEEEGGGTEEEEEEECTT---------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEECCCCCcEEEEEEcCC---------------CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 345557889999987541 1111222345778899999999999996654 889999954321 1
Q ss_pred eeec--ccccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 225 LLDF--ETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 ~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.... ...+...+.. ++|+|++|++++. +++|++|+........... ...+...+.++.|+|+++.++
T Consensus 72 ~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 72 ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--------VVEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE--------EECCCTTBCCCEECTTSSEEE
T ss_pred cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc--------ccCCCccceEEEeeecceeee
Confidence 1111 1223333333 9999998888874 7799999985444211111 123446778899999999888
Q ss_pred EEeCC-CcEEEEEeCCCCCc-----------cccceEEEeecCCCCeEEEEE-----------------------EEEe-
Q 003360 300 SGDQS-GMVRIFKLKYEPHA-----------IENSFLSFTGSKKGNSHIIHS-----------------------VKVM- 343 (826)
Q Consensus 300 sgs~d-g~V~iwd~~~~~~~-----------~~~~~~~i~~s~~~~~~~~~~-----------------------~~~~- 343 (826)
+++.+ ..|.+|+....... .......+.++.++....... +...
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 223 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeee
Confidence 87765 46899998765211 011223344444443221110 0000
Q ss_pred ---eccCCeEEEEEccCCCEEEE-EecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-C
Q 003360 344 ---KINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-D 418 (826)
Q Consensus 344 ---~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-D 418 (826)
........++++++++++++ +..++.+.+|++..................+.+++|+| |+++|++++. +
T Consensus 224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp------DGk~l~va~~~~ 297 (333)
T d1ri6a_ 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH------SGKYLIAAGQKS 297 (333)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT------TSSEEEEECTTT
T ss_pred cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC------CCCEEEEEECCC
Confidence 01234677899999987655 45678999999876543322222123445677899999 7998888765 5
Q ss_pred CcEEEE--ECCCCceEEe
Q 003360 419 SSVLVL--DSDNGNMLST 434 (826)
Q Consensus 419 g~V~iw--d~~tg~~i~~ 434 (826)
++|.+| |..+|++..+
T Consensus 298 ~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 298 HHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp CEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEEECCCCcEEEE
Confidence 789998 6677865443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=8.3e-11 Score=123.46 Aligned_cols=255 Identities=6% Similarity=-0.057 Sum_probs=161.8
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc-cCCCEEEEEEeeCCCeEEEe-c-CCcEEEec
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF-LDSSITAMKLITGNSFILSS-A-DEDYSLLA 219 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~ 219 (826)
....++++...++.|.+||..+- +...++.. |...+..++|+||+++++++ . ++.|.+|+
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~-----------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d 68 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASD-----------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTT-----------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCC-----------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence 44578888999999999999872 12222332 34567899999999988654 4 88999997
Q ss_pred cCCCceee-cccc-----cCCccee--eCCCCCEEEEEE------------CCCcEEEEeCCC-Cceeeeeecccccccc
Q 003360 220 KSVPPLLD-FETK-----LKDGSQS--HSKVKNLFITGH------------SDGAINFWDVSC-PLFLLILSLKQQSEKD 278 (826)
Q Consensus 220 ~~~~~~~~-~~~~-----h~g~V~~--~s~~~~~l~Tgs------------~DGtVriWD~s~-~~~~~i~~l~~~~~~~ 278 (826)
........ +... +...+.. ++|+|+++++++ .++.+.+||... ..... +.
T Consensus 69 ~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~------ 139 (346)
T d1jmxb_ 69 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP---VR------ 139 (346)
T ss_dssp TTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC---SE------
T ss_pred CccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeE---EE------
Confidence 66543332 1111 1111222 899999887775 467788888733 22111 11
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc----cceEEEeecCCCC----------e----------
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE----NSFLSFTGSKKGN----------S---------- 334 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~----~~~~~i~~s~~~~----------~---------- 334 (826)
.......+..+.+++++.+++.+ +.+.+|++.+...... .....+.+++++. .
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (346)
T d1jmxb_ 140 TFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216 (346)
T ss_dssp EEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred eeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence 11122456677777887766643 4578888765421100 0000000000000 0
Q ss_pred ---------------EEEEE--------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 335 ---------------HIIHS--------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 335 ---------------~~~~~--------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
..+.. .....+...+.++.+++++..++++.. +.|++||+.+++.+.... +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~----~~ 291 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN----LD 291 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE----CS
T ss_pred ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc----CC
Confidence 00000 122334556888999998888887765 479999999999885543 23
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
..+.+++|++ |+.+|++++.|+.|++||..+++.+.++..
T Consensus 292 ~~~~~va~s~------DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 292 HTYYCVAFDK------KGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp SCCCEEEECS------SSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEcC------CCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 4688999999 799999999999999999999999988643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.38 E-value=2.5e-11 Score=127.56 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=83.6
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
.++++..++.+.+||........ .....+...+..+.+++++..++.+.. +.|.+||..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~------- 284 (346)
T d1jmxb_ 222 DPATADLLYGYLSVDLKTGKTHT---------QEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKL------- 284 (346)
T ss_dssp --CCCEEEEEEEEEETTTCCEEE---------EEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEE-------
T ss_pred eEeeccCCceEEEEECCCCceEE---------EEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcE-------
Confidence 34445556677778774333111 012345578889999999888877654 5799999874322
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
+....+...+.+++|+|||++|++|+.||.|+|||+.+++.+.+.....++.+..
T Consensus 285 ---------------~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~~~~ 339 (346)
T d1jmxb_ 285 ---------------IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339 (346)
T ss_dssp ---------------EEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCCBTC
T ss_pred ---------------EEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCCccee
Confidence 3444455679999999999999999999999999999999997777655544433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.36 E-value=1.2e-09 Score=116.46 Aligned_cols=215 Identities=9% Similarity=-0.051 Sum_probs=126.9
Q ss_pred EEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCceeeee
Q 003360 196 TAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
..+.|+++++.++... +..+.+|......... +.....+ ++++++ .+++++.||++.+||..........
T Consensus 128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence 4577899998876644 4567777654432221 1222223 788876 5578999999999999544421111
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
.... ...........+.+.+++. ++..+.++.+.+|+........ +......... . ..........
T Consensus 204 ~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~-~-----~~~~~~~~~~ 269 (373)
T d2madh_ 204 VGAM----LTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATN---KAPIDALSGG-R-----KADTWRPGGW 269 (373)
T ss_pred eeec----cccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEE---EEeeccccCc-E-----EeeeeccCcc
Confidence 1100 0011112334555666654 4456678899999987542210 0000000000 0 1111112223
Q ss_pred EEEEEccCC----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE--EEEEEC
Q 003360 350 ISLNMNRNS----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF--LVIATK 417 (826)
Q Consensus 350 ~~l~~s~~g----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~--l~sgs~ 417 (826)
..+++++++ ..++....++.|.+||..+++.+... .+...+..++|+| |+.. +++++.
T Consensus 270 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~----~~~~~~~~~a~sp------DG~~~l~vt~~~ 339 (373)
T d2madh_ 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI----SLGHDVDAISVAQ------DGGPDLYALSAG 339 (373)
T ss_pred eeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe----cCCCCeeEEEECC------CCCEEEEEEeCC
Confidence 334444444 34556677889999999999888544 3456788999999 6764 457889
Q ss_pred CCcEEEEECCCCceEEeeecc
Q 003360 418 DSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
|++|++||..+|+.+.++..+
T Consensus 340 d~~v~v~D~~tg~~~~~~~~~ 360 (373)
T d2madh_ 340 TEVLHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred CCeEEEEECCCCCEEEEECCC
Confidence 999999999999999887544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.9e-10 Score=118.86 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=108.1
Q ss_pred CEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCcccc
Q 003360 244 NLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~ 321 (826)
..+++++.|++|++||+ +...+..+..+ .|...|+.|+|+||+++|++++ .|+.|++|++......
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~---------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--- 72 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVV---------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--- 72 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEE---------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc---
Confidence 36788899999999998 44443332222 3567899999999999986655 5899999999744321
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... .....+...+..++|+|+|++|++++. ++.|.+|+............ ..+...+.++.|+
T Consensus 73 ------------~~~---~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s 136 (333)
T d1ri6a_ 73 ------------LTF---AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANIS 136 (333)
T ss_dssp ------------EEE---EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEEC
T ss_pred ------------EEE---eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc-cCCCccceEEEee
Confidence 100 122233455788999999999988874 77899999887765533332 2455667788888
Q ss_pred ecccCCCCCcEEEEEEC-CCcEEEEECCCCc
Q 003360 401 TCSLQGFEKNFLVIATK-DSSVLVLDSDNGN 430 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~-Dg~V~iwd~~tg~ 430 (826)
+ |+.++++++. +..|.+|+..+..
T Consensus 137 ~------d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 137 P------DNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp T------TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred e------cceeeeccccccceeeEEEeccCC
Confidence 8 5888877774 4578999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.26 E-value=2e-09 Score=114.70 Aligned_cols=183 Identities=10% Similarity=-0.038 Sum_probs=108.7
Q ss_pred CCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccC----Ccc--ee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 192 DSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLK----DGS--QS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~----g~V--~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
.....++.++++++.++. .+ |+.+.+|+............+. ... .. +++++ .++..+.++.+.+|+..
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADIS 242 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcC
Confidence 344567889999987654 44 8999999655433332211111 111 11 44444 45566789999999995
Q ss_pred CCceeeeeecccccccc--cccCCCCeEEEEEeCCCCEE----------EEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 262 CPLFLLILSLKQQSEKD--FSLSGIPLTALYYDGTSRVL----------VSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~--~~~h~~~V~~l~fsp~~~~L----------asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
......+.......... ..........+++++++..+ ++...++.|.+||..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~------------ 310 (373)
T d2madh_ 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------------ 310 (373)
T ss_pred CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE------------
Confidence 55432322222111110 01111233445555555443 4455566777887764332
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEccCCCE--EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNRNSQH--LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~--lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+....+...+.+++|+|||+. +++++.|++|+|||+.+++.+.+.. .+....+.++..
T Consensus 311 ----------~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~---~~g~~P~~l~~~ 370 (373)
T d2madh_ 311 ----------SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV---ELGSGPQVLSVM 370 (373)
T ss_pred ----------EEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC---CCCCCCcEEEEe
Confidence 444455677999999999984 5789999999999999999885553 344455555554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=6.4e-10 Score=117.61 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=128.3
Q ss_pred EEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeeec
Q 003360 196 TAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILSL 271 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l 271 (826)
..++|+++++.++.+. +..+.+|+......... ....+....+...+...++.+.||...+|.. ....... ...
T Consensus 109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~-~~~ 186 (355)
T d2bbkh_ 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THT 186 (355)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EEC
T ss_pred ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE-EecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEE-Eec
Confidence 4468999999888754 55678886654333222 1111111112222344555666776666655 2222111 111
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
... ...+...+....+.+++..++.++.++.+.+|++..+... .+.......... ............
T Consensus 187 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~---~~~~~~p~~~~~ 253 (355)
T d2bbkh_ 187 EVF----HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK------FLPAVEALTEAE---RADGWRPGGWQQ 253 (355)
T ss_dssp CCC----SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE------ECCCEESSCHHH---HHTTEEECSSSC
T ss_pred ccc----cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE------EEeccCCcccce---EeeeeeccceEE
Confidence 100 0123345566788899999999999999999999865321 000000000000 000001223445
Q ss_pred EEEccCCCEEEEEecC----------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc--EEEEEECCC
Q 003360 352 LNMNRNSQHLAVGSDQ----------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN--FLVIATKDS 419 (826)
Q Consensus 352 l~~s~~g~~lasGs~d----------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~--~l~sgs~Dg 419 (826)
+++++++..++..+.+ ..|.+||..+++.+.... +...+.+++|+| |+. ++++++.|+
T Consensus 254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~~~a~sp------DG~~~l~v~~~~d~ 323 (355)
T d2bbkh_ 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQ------DEKPLLYALSTGDK 323 (355)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECC------SSSCEEEEEETTTT
T ss_pred EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----CCCCEEEEEEcC------CCCeEEEEEECCCC
Confidence 7899999988776654 369999999998875443 234578899998 676 345566799
Q ss_pred cEEEEECCCCceEEeeecc
Q 003360 420 SVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~ 438 (826)
+|++||..+|+.+.++..+
T Consensus 324 ~i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 324 TLYIHDAESGEELRSVNQL 342 (355)
T ss_dssp EEEEEETTTCCEEEEECCC
T ss_pred EEEEEECCCCCEEEEEeCc
Confidence 9999999999999887433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=7.3e-09 Score=109.20 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=99.6
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..+.+++++..++... ++.+..+...... ..+...+.. +.+++..++.++.+|.+.+|+........+...
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 234 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence 4456777777776644 3333333222111 112222322 677778889999999999999955543221111
Q ss_pred cccccc--ccccCCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 272 KQQSEK--DFSLSGIPLTALYYDGTSRVLVSGDQS----------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 272 ~~~~~~--~~~~h~~~V~~l~fsp~~~~Lasgs~d----------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
...... ...........+++++++..+++...+ ..|.+||..++..
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~---------------------- 292 (355)
T d2bbkh_ 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER---------------------- 292 (355)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----------------------
T ss_pred CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE----------------------
Confidence 110000 011111334568899999888776543 3688999874432
Q ss_pred EEEeeccCCeEEEEEccCCC--EEEEEecCCeEEEEecCCCeeEEeee
Q 003360 340 VKVMKINGSIISLNMNRNSQ--HLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~--~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+....+...+.+++|+|||+ +++++..|+.|+|||+.+++++.+..
T Consensus 293 ~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 293 LAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp EEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 23333445688999999997 45677889999999999999885543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.71 E-value=7.4e-08 Score=102.63 Aligned_cols=228 Identities=6% Similarity=-0.141 Sum_probs=121.1
Q ss_pred EEEEeeCCCeEEEec-----------CCcEEEeccCCCceee-cccc-----cCCcc---eeeCCCCCEEEEEE-CCCcE
Q 003360 197 AMKLITGNSFILSSA-----------DEDYSLLAKSVPPLLD-FETK-----LKDGS---QSHSKVKNLFITGH-SDGAI 255 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~-----------d~~i~~w~~~~~~~~~-~~~~-----h~g~V---~~~s~~~~~l~Tgs-~DGtV 255 (826)
.++|+|+++.++.++ |+.|.+|+........ ...+ ..+.- ..|+|||++|+++. .+++|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 478999999998743 5669999765433222 1111 11111 11999999888776 57999
Q ss_pred EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc-cccceEEEeecCCC--
Q 003360 256 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA-IENSFLSFTGSKKG-- 332 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~-~~~~~~~i~~s~~~-- 332 (826)
.+||+..... +..+...... ...+......+.+++++.++++...++....|........ .........+..++
T Consensus 149 ~~~d~~~~~~--~~~~~~~~~~-~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 149 AGLSVPGASD--DQLTKSASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE--EEEEECSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEECCCCcE--eEEeeccCcc-eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence 9999955542 1222211000 0011122233444444444444444333333322211000 00001111111111
Q ss_pred ------CeEEEEE----EEEe--------------eccCCeEEEEEccCCCEEEEEecC---------CeEEEEecCCCe
Q 003360 333 ------NSHIIHS----VKVM--------------KINGSIISLNMNRNSQHLAVGSDQ---------GYVYLLDTEGPT 379 (826)
Q Consensus 333 ------~~~~~~~----~~~~--------------~~~~~V~~l~~s~~g~~lasGs~d---------G~V~vwD~~~~~ 379 (826)
....... +... ........+++++++..+++...+ ..|.+||..+++
T Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence 1100000 0000 001223457889998877665433 358999999998
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCc-EE-EEEECCCcEEEEECCCCceEEeeec
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKN-FL-VIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l-~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.+.... ....+.+++|++ |++ +| +++..|+.|++||..+|+.+.++.+
T Consensus 306 ~~~~~~----~~~~~~~~a~sp------DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 306 TSGPIS----NGHDSDAIIAAQ------DGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEECCE----EEEEECEEEECC------SSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EeEEec----CCCceeEEEECC------CCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 884443 234678899998 665 34 4556789999999999999988643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.50 E-value=1.8e-05 Score=86.52 Aligned_cols=73 Identities=4% Similarity=-0.043 Sum_probs=49.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccc------------------cCCccee--eCCCCCEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK------------------LKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~------------------h~g~V~~--~s~~~~~l~ 247 (826)
+..|...+..+.|+|||+.++...+..+.+|+............ +.+.... |+|||+.|+
T Consensus 107 l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia 186 (470)
T d2bgra1 107 EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (470)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred cccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccc
Confidence 56777889999999999999998888888885443322221011 1122233 999999999
Q ss_pred EEECCCc-EEEEeC
Q 003360 248 TGHSDGA-INFWDV 260 (826)
Q Consensus 248 Tgs~DGt-VriWD~ 260 (826)
....|.+ |+.|++
T Consensus 187 ~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 187 YAQFNDTEVPLIEY 200 (470)
T ss_dssp EEEEECTTCCEEEE
T ss_pred eeEecCCcCceEEE
Confidence 9887655 655543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.44 E-value=4.2e-06 Score=88.57 Aligned_cols=227 Identities=9% Similarity=-0.077 Sum_probs=121.9
Q ss_pred EEEeeCCCeEEE---ec-CCcEEEe--ccCCCceeecccccCCcceeeCCCCCEEEEEE----------CCCcEEEEeCC
Q 003360 198 MKLITGNSFILS---SA-DEDYSLL--AKSVPPLLDFETKLKDGSQSHSKVKNLFITGH----------SDGAINFWDVS 261 (826)
Q Consensus 198 ~~fs~~~~~l~~---~~-d~~i~~w--~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs----------~DGtVriWD~s 261 (826)
++..++++.... +. ++...+| +............+......++|+|+.|++.+ .|++|++||..
T Consensus 25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~ 104 (368)
T d1mdah_ 25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence 345666665322 22 5665555 55554444432333333333999999888754 47889999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccc------------cceEEEee
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIE------------NSFLSFTG 328 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~------------~~~~~i~~ 328 (826)
.... +..+....... ...+.....++|+||+++|+++. .++.|.+||+.+...... .....+.+
T Consensus 105 t~~~--~~~i~~p~~~~-~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 105 TFLP--IADIELPDAPR-FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp TCCE--EEEEEETTSCS-CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred CCcE--eeeecCCccce-ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEE
Confidence 4332 22232110100 01122334689999999998886 468999999987632110 11123444
Q ss_pred cCCCCeEEEEE-------E-----EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC-------
Q 003360 329 SKKGNSHIIHS-------V-----KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD------- 389 (826)
Q Consensus 329 s~~~~~~~~~~-------~-----~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~------- 389 (826)
+.++....+.. . ....+...+....+.+++..+. ..+|.+.++|...............
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeee
Confidence 55554432110 0 0001123355667777775443 4456677787766655432221100
Q ss_pred --CCCCeeEEEEeecccCCCCCcEEEEEECC---------CcEEEEECCCCceEEee
Q 003360 390 --ISSGIVSLQFETCSLQGFEKNFLVIATKD---------SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 390 --~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---------g~V~iwd~~tg~~i~~~ 435 (826)
.......+.+++ ++..+++...+ ..|.+||..+++.+.++
T Consensus 260 ~~~~~g~~~~a~~~------~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~ 310 (368)
T d1mdah_ 260 NFRSAGFQMVAKLK------NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp TEEECSSSCEEEET------TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred eecCCCceeEEEcC------CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe
Confidence 001123355665 45655554322 25899999999988764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.28 E-value=1.8e-06 Score=94.78 Aligned_cols=151 Identities=11% Similarity=0.124 Sum_probs=103.0
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---------CCcEEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---------SGMVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---------dg~V~i 309 (826)
|.++++++. ..||.+.+||+.+.....+ +. ...+..|...|.++.|+||++.|+.++. ++.+.|
T Consensus 24 W~~d~~~~~--~~~~~~~~~~~~t~~~~~~--~~---~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 24 WISDHEYLY--KQENNILVFNAEYGNSSVF--LE---NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp ECSSSEEEE--ESSSCEEEEETTTCCEEEE--EC---TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred eCCCCEEEE--EcCCcEEEEECCCCCEEEE--Ec---hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 778888776 4688999999944442221 22 2234566778999999999999998753 567889
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc--
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-- 387 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-- 387 (826)
||+.++.. .....+...+..+.|||||+.+|... ++.+++|+..++.......-.
T Consensus 97 ~d~~~~~~----------------------~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~ 153 (470)
T d2bgra1 97 YDLNKRQL----------------------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (470)
T ss_dssp EETTTTEE----------------------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred EECCCCcc----------------------cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCC
Confidence 99985432 22233466789999999999999964 668999999988765322110
Q ss_pred -------------cCCCCCeeEEEEeecccCCCCCcEEEEEECCCc-EEEEE
Q 003360 388 -------------SDISSGIVSLQFETCSLQGFEKNFLVIATKDSS-VLVLD 425 (826)
Q Consensus 388 -------------~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~-V~iwd 425 (826)
....+....+.|+| |+.+|+....|.+ |..|+
T Consensus 154 ~~~~~g~~d~~~~~~~~~~~~~~~wSP------DGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 154 DIIYNGITDWVYEEEVFSAYSALWWSP------NGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECT------TSSEEEEEEEECTTCCEEE
T ss_pred CcccccccceeeeeeecCCccccEECC------CCCccceeEecCCcCceEE
Confidence 00122345577888 7999988876543 44443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.21 E-value=2.5e-05 Score=83.92 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=124.4
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-ccccCCccee--eCCCCC--EEEEEECCCc------
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKN--LFITGHSDGA------ 254 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~--~l~Tgs~DGt------ 254 (826)
-..|++.+.+..++|||++++.+. +..|.+++......... ..++..+... |+|+++ +++.++.+..
T Consensus 67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence 356888888888899999998865 77888887665333222 3455556655 899888 4444444321
Q ss_pred -----------EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEeCCCCCcc---
Q 003360 255 -----------INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHAI--- 319 (826)
Q Consensus 255 -----------VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~~~~~~~~--- 319 (826)
+..+|...... ...+. . +.....+.|+|+++++++++.+. .+..++..+.....
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v--~~qI~--------v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~ 215 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDV--AWQVI--------V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV 215 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSE--EEEEE--------E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred cccccccccceEEeecCcccee--eEEEe--------c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence 23355522221 11111 1 13567899999999999887653 22222222111100
Q ss_pred --------------------ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCC
Q 003360 320 --------------------ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 320 --------------------~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~ 378 (826)
.+.+..+........ +.+.+.......+.++|||+++ ++|..+++|.|||+.+.
T Consensus 216 v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v-----~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 216 VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-----TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS-----EEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred eCCccceEEEecCCCEEEeCCCCcEEEEcccCCce-----EEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 001111111111111 3333434456789999999976 55778999999998653
Q ss_pred eeEEee--------ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 379 TVLYQK--------HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 379 ~~l~~~--------~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...+.. .......-.....+|.+ ++..+.+...|+.|..|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~------~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDG------RGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp HHHTTTSSCGGGGEEECCBCCSCEEEEEECS------SSEEEEEETTTTEEEEEEHH
T ss_pred hhHhhccCCcceEEEeecccccCcccceecC------CceEEEcccccceEEEeccc
Confidence 211000 00001112234456776 47777788899999999974
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.17 E-value=0.00095 Score=70.02 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCC-Cceeec-ccccCCccee--eCCCCCE--EEEE-ECCCcEEEEeC-CCCc
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSV-PPLLDF-ETKLKDGSQS--HSKVKNL--FITG-HSDGAINFWDV-SCPL 264 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-~~~~~~-~~~h~g~V~~--~s~~~~~--l~Tg-s~DGtVriWD~-s~~~ 264 (826)
..++-++|+++++.+.++..+.+..|.... ...... ..+..++... ++++++. ++++ ...++|..+.+ ....
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence 345668999999999887755555553221 112211 1111222222 7888884 3333 23567776665 2221
Q ss_pred eeeeeeccccc-----cccc-ccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 265 FLLILSLKQQS-----EKDF-SLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 265 ~~~i~~l~~~~-----~~~~-~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
...+..+.... .... ......+.++.|+|+++++++++. ...|.+|++..... ....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~----------------~~~~ 183 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE----------------VELV 183 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC----------------EEEE
T ss_pred cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc----------------eeec
Confidence 11112221100 0000 011245789999999998888764 45788888763211 1100
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeE--Eeee---cc-----------cCCCCCeeEEEEe
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVL--YQKH---IA-----------SDISSGIVSLQFE 400 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l--~~~~---~~-----------~~~~~~V~sl~f~ 400 (826)
..............++|+|+++++.+.. .+++|.+||+...+.. .... .. .........+.++
T Consensus 184 ~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 263 (365)
T d1jofa_ 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC
Confidence 0011112234578999999999885555 5789999999765432 1111 10 0111224567777
Q ss_pred ecccCCCCCcEEEEEE
Q 003360 401 TCSLQGFEKNFLVIAT 416 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs 416 (826)
| |+.+|+++.
T Consensus 264 p------dG~~lyvsn 273 (365)
T d1jofa_ 264 F------SGKYMFASS 273 (365)
T ss_dssp T------TSSEEEEEE
T ss_pred C------CCCEEEEEc
Confidence 7 688888775
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.17 E-value=0.00011 Score=75.23 Aligned_cols=210 Identities=9% Similarity=0.045 Sum_probs=128.4
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC--Cceeee
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC--PLFLLI 268 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~--~~~~~i 268 (826)
.+..+++.+||+.+++.. ++.|..|+.... ...+ ....+.+.+ ++++|+++++...++.+..|+... .....+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIH-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEE-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEE-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 467889999999988877 888877765432 2222 344566666 999999999999999999888722 221111
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc-------------c--ccceEEEee-----
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA-------------I--ENSFLSFTG----- 328 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~-------------~--~~~~~~i~~----- 328 (826)
... ........+.+.++++++++-+.++.+..++...+... . ......+..
T Consensus 107 ~~~---------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l 177 (302)
T d2p4oa1 107 LTL---------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 177 (302)
T ss_dssp EEC---------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred ccc---------CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence 111 12356789999999998888888887777776644100 0 000111111
Q ss_pred ----cCCCCeEEEEE--------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 329 ----SKKGNSHIIHS--------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 329 ----s~~~~~~~~~~--------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
+..+....+.. ............|++.++|.++++...++.|..|+........ ... ...-..+++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~-~~~-~~~~~~pt~ 255 (302)
T d2p4oa1 178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII-AQA-EQGVIGSTA 255 (302)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE-ECG-GGTCTTEEE
T ss_pred eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEE-Eec-CCCCCCceE
Confidence 11111111000 0111112345679999999988888889999999886544331 221 123345789
Q ss_pred EEEeecccCCCCCcEEEEEECCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
++|... +.|++.|++++..+
T Consensus 256 vafg~~---~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 256 VAFGQT---EGDCTAIYVVTNGG 275 (302)
T ss_dssp EEECCS---TTTTTEEEEEECTT
T ss_pred EEEcCC---CCCCCEEEEECCCC
Confidence 999642 22577888777654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.99 E-value=0.00087 Score=67.33 Aligned_cols=203 Identities=12% Similarity=0.121 Sum_probs=123.8
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCcc---ee---eC-CCCCEEEE-EECCCcEEEEeCCCCc
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGS---QS---HS-KVKNLFIT-GHSDGAINFWDVSCPL 264 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V---~~---~s-~~~~~l~T-gs~DGtVriWD~s~~~ 264 (826)
-+.+++.++++.+++-. ...|++|+........+... ...+. +. +. ..+.++++ .+.++.|.+++..+..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 104 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF 104 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccccc
Confidence 36788899998777755 77889997665444333111 11111 11 22 23334443 3455677778776554
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. ..+. .........+++.+++.++++....+.+.+++... .... ......
T Consensus 105 ~---~~~~-------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g------------------~~~~--~~g~~~ 154 (279)
T d1q7fa_ 105 V---RKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------------NVLH--KFGCSK 154 (279)
T ss_dssp E---EEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------------CEEE--EEECTT
T ss_pred e---eecC-------CCcccccceeccccCCcEEEEeeccceeeEeccCC------------------ceee--cccccc
Confidence 2 1121 01224678899999998888877777777766431 1100 011112
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-CCcEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-DSSVLV 423 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~i 423 (826)
+......+++.+++..+++....+.|.+||.. ++.+.++.. .+.......|++.+ +++++++-+. ++.|.+
T Consensus 155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~------~G~i~Vad~~~~~~v~~ 226 (279)
T d1q7fa_ 155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS------NGEILIADNHNNFNLTI 226 (279)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT------TCCEEEEECSSSCEEEE
T ss_pred cccccceeeeccceeEEeeeccccceeeeecC-Cceeeeecc-cccccCCccccccc------CCeEEEEECCCCcEEEE
Confidence 23457889999999888888889999999985 455544421 23445577888888 4776665443 457999
Q ss_pred EECCCCceEEeee
Q 003360 424 LDSDNGNMLSTNL 436 (826)
Q Consensus 424 wd~~tg~~i~~~~ 436 (826)
|+.. |+++.++.
T Consensus 227 f~~~-G~~~~~~~ 238 (279)
T d1q7fa_ 227 FTQD-GQLISALE 238 (279)
T ss_dssp ECTT-SCEEEEEE
T ss_pred ECCC-CCEEEEEe
Confidence 9965 88887763
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.96 E-value=0.00077 Score=70.74 Aligned_cols=178 Identities=8% Similarity=-0.020 Sum_probs=99.0
Q ss_pred eCCCCCEEEEEEC-CCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGHS-DGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~ 315 (826)
|+|+|++++++.. ...|.+|+. ....+.....+. ....+...+.+.|+|+++++.+.. .+++|.+|++..+
T Consensus 152 ~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~------~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee------ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 9999998777753 457888876 322321111111 112346789999999999886655 5789999999754
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec------CCeEEEEecCCCeeEEee---ec
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD------QGYVYLLDTEGPTVLYQK---HI 386 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~---~~ 386 (826)
....-.....+.....+.... .............+.++|+|++|+++.. .+.|..|++.....+... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDR--DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCB--CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CceEEEEeeeecccccccccc--ccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 332101111111100000000 0000011223567899999999887743 234777777543222111 11
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCC
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNG 429 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg 429 (826)
..........+.|+|. ++.+|+++. .++.|.+|+.+..
T Consensus 304 ~~~~G~~p~~i~~~p~-----~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPW-----SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTT-----CTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCC-----CCCEEEEEeCCCCeEEEEEEeCC
Confidence 1112334566888763 578887775 6789999987643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.88 E-value=0.00048 Score=73.62 Aligned_cols=266 Identities=10% Similarity=0.045 Sum_probs=139.1
Q ss_pred EEEEEECCCcEEEEeC-CCCceeeeeeccccc-------------------ccccccCCCCeEEEEEeCCCCEEEEEe-C
Q 003360 245 LFITGHSDGAINFWDV-SCPLFLLILSLKQQS-------------------EKDFSLSGIPLTALYYDGTSRVLVSGD-Q 303 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~-------------------~~~~~~h~~~V~~l~fsp~~~~Lasgs-~ 303 (826)
.+++|+.+|.|++||+ +.+.+..|-.+.... ......|.-......+.|||++|.+.. .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 4678889999999998 555543322221100 000122334456666789999886664 6
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC--EEEEEecCC-------------
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ--HLAVGSDQG------------- 368 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~lasGs~dG------------- 368 (826)
+..|.++|+.+.+.. . ....+....+..++|+|+|+ +++.++++.
T Consensus 93 ~~rVavIDl~t~k~~-----------------~---ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 93 NTRVARIRLDIMKTD-----------------K---ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp TTEEEEEETTTTEEE-----------------E---EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred CCEEEEEECCCCcEe-----------------e---EEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence 779999999854321 0 21223345688899999987 555555443
Q ss_pred ----eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-cEEEEECCCCceEEeeeccC----
Q 003360 369 ----YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-SVLVLDSDNGNMLSTNLIHP---- 439 (826)
Q Consensus 369 ----~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg-~V~iwd~~tg~~i~~~~~~~---- 439 (826)
.+..+|..+.++..+.... ..+..+.|+| |+.++++.+.+. .+..++..+.+.+.......
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~sp------dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~ 222 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVIVD----GNLDNTDADY------TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI 222 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEEES----SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred cccceEEeecCccceeeEEEecC----CCccceEECC------CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence 2356888888877555432 2456788888 689988887654 33333333332221110000
Q ss_pred -----C------CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee--cCcEEEEeccccc---c
Q 003360 440 -----K------KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS--EKAACAYSLSHAV---Q 503 (826)
Q Consensus 440 -----~------~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s--e~~irv~sl~~~~---~ 503 (826)
. ....+..+..... ... ...+...+...-+ ..++++.|++++. +..+.||++.... +
T Consensus 223 ~~~~~dGk~~~v~~~~v~vvd~~~~-~~v-----~~~IPvgksPhGv-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~ 295 (441)
T d1qnia2 223 AAAVKAGNFKTIGDSKVPVVDGRGE-SEF-----TRYIPVPKNPHGL-NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE 295 (441)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSSS-CSS-----EEEECCBSSCCCE-EECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred EEEecCCCEEEeCCCCcEEEEcccC-Cce-----EEEEeCCCCccCc-eECCCCCEEEEeCCcCCcEEEEEeehhhhHhh
Confidence 0 0001111110000 000 0000000111111 3567888887774 4689999987532 2
Q ss_pred ccceeeeeeecCCCCceeeEeeee--CCceEEEEEEeeceEEEeccC
Q 003360 504 GVKKVLYKKKFHSSSCCWASTFYS--GSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 504 g~~k~~~k~~~~~~~c~~~~~~~~--~~~~~lv~~~~~G~I~i~slP 548 (826)
+..+....+... ..++....-.. +++.....++-+..|..|++.
T Consensus 296 ~~~~~~~~~~~~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 296 DKIELRDTIVAE-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp TSSCGGGGEEEC-CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ccCCcceEEEee-cccccCcccceecCCceEEEcccccceEEEeccc
Confidence 221111111111 12222222222 667788888888889888873
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.66 E-value=0.023 Score=56.39 Aligned_cols=116 Identities=7% Similarity=0.020 Sum_probs=76.7
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecc-cccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFE-TKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCP 263 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~-~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~ 263 (826)
..+......+++.+++..+++.. .+.|.+|+.....+..+. .+....... +.++|+++++-.. ++.|.+++..+.
T Consensus 153 ~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 153 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred cccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence 34556677888888888777766 778888876654444431 111111222 7899998888654 557999998766
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
.. ..+.. .......+.|++.|++.+ ++++.+..|++|++..
T Consensus 233 ~~---~~~~~------~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 233 LI---SALES------KVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQ 273 (279)
T ss_dssp EE---EEEEE------SSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSC
T ss_pred EE---EEEeC------CCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeee
Confidence 42 22221 112235789999999864 5566889999999874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.0026 Score=62.98 Aligned_cols=192 Identities=8% Similarity=0.003 Sum_probs=114.4
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
.+.+++.+++...++.. ...++++.......... ........+ +.++++++++-..+..+..++..+..... .
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~---~ 134 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---L 134 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE---C
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee-eeeeeecccccccccceeEeeccccccccccccccceeee---e
Confidence 35678889988777666 55666665443222211 111122233 77888888887777777777774443101 1
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
. . ..-...+.++++++++++++...++.|..|+....... ......-.....
T Consensus 135 ~---~----~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~---------------------~~~~~~~~~p~g 186 (260)
T d1rwia_ 135 P---F----TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV---------------------VLPFTDITAPWG 186 (260)
T ss_dssp C---C----CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE---------------------ECCCSSCCSEEE
T ss_pred e---e----cccCCcceeeecCCCCEeeeccccccccccccccceee---------------------eeeccccCCCcc
Confidence 1 0 01134578999999998888888888888886632110 000011234688
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|++.++|.++++....+.|..++..+..... .. ...-.....|++.+ ++.++++-..+++|+.++..
T Consensus 187 i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-~~--~~~~~~P~~i~~d~------~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDS------DRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEECTTCCEEEEETTTTEEEEECTTCSCCEE-CC--CCSCCCEEEEEECT------TCCEEEEEGGGTEEEEECCC
T ss_pred ceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-Ec--cCCCCCeEEEEEeC------CCCEEEEECCCCEEEEEeCC
Confidence 9999999888888888888888876543321 11 12223456788876 46655555556666665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.018 Score=56.22 Aligned_cols=201 Identities=9% Similarity=0.054 Sum_probs=112.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEEC-CCcEEEEeC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDV 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~ 260 (826)
+..+...+..-+|||||+.|+... .+...+| .......... ..+.+.... |+|++..++..+. ++...++..
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE-eeeecccccceecCCCCeeeEeeecCCccceeec
Confidence 344556677889999999998754 2222223 3333222222 344555555 9999998877654 334344333
Q ss_pred --CCCceeeeeecccccccccccCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 --SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 --s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
..... .. ............+++++.. +++...+|...+|.........
T Consensus 113 ~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~------------------ 163 (269)
T d2hqsa1 113 DLASGQI-----RQ------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP------------------ 163 (269)
T ss_dssp ETTTCCE-----EE------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC------------------
T ss_pred ccccccc-----ee------eeeccccccccccccccccceecccccCCceEeeeecccccc------------------
Confidence 22111 00 0112234455567777654 4455566766666554222110
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..............|+|++..++..+.++ .+.+.|...+... .. ..........|+| ||..|+.
T Consensus 164 --~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~---~~~~~~~~p~~SP------DG~~i~f 230 (269)
T d2hqsa1 164 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VL---SSTFLDETPSLAP------NGTMVIY 230 (269)
T ss_dssp --EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--EC---CCSSSCEEEEECT------TSSEEEE
T ss_pred --eeeecccccccccccccccceeEEEeecCCceeeeEeecccccce--Ee---ecCccccceEECC------CCCEEEE
Confidence 11222344567788999999988776654 3455555554433 21 2334556778998 6888765
Q ss_pred EECC---CcEEEEECCCCce
Q 003360 415 ATKD---SSVLVLDSDNGNM 431 (826)
Q Consensus 415 gs~D---g~V~iwd~~tg~~ 431 (826)
.+.. ..|+++++.++..
T Consensus 231 ~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 231 SSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEEETTEEEEEEEETTSCCE
T ss_pred EEcCCCCcEEEEEECCCCCE
Confidence 5543 3689999986554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.016 Score=56.95 Aligned_cols=195 Identities=11% Similarity=0.023 Sum_probs=115.2
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
.-+.+++.++|...++.. .+.+..+............+-...... +.++++++++....+.|++++...... +
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--~- 91 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--V- 91 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--E-
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee--e-
Confidence 347889999998766644 455555543322222221110111112 788999999888888888776633321 0
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
.. .........|++.+++.++++-..+..+..++...... . ......-...
T Consensus 92 -~~-------~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~p 142 (260)
T d1rwia_ 92 -LP-------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----------------T----VLPFTGLNDP 142 (260)
T ss_dssp -CC-------CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-----------------E----ECCCCSCCSC
T ss_pred -ee-------eeeeeecccccccccceeEeecccccccccccccccee-----------------e----eeeecccCCc
Confidence 11 01114678999999998877665555565555432111 0 0000111235
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+++++++|.++++...++.|..+|........ ...........+++.+ ++.++++....+.|..++...+
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~---~~~~~~~~p~gi~~d~------~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDE------AGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECT------TCCEEEEETTTTEEEEECTTCS
T ss_pred ceeeecCCCCEeeeccccccccccccccceeee---eeccccCCCccceeee------eeeeeeeecCCCEEEEEeCCCC
Confidence 789999999988888888999999987654331 1122334567788877 4776666666778888887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.52 E-value=0.0056 Score=61.86 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=102.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
++++|++++|...+++|..||..+... .+. .....+.+++|+++++++++...++.+..|+......
T Consensus 35 v~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~-----------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~- 101 (302)
T d2p4oa1 35 SAPDGTIFVTNHEVGEIVSITPDGNQQ-IHA-----------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG- 101 (302)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEE-EEE-----------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-
T ss_pred ECCCCCEEEEeCCCCEEEEEeCCCCEE-EEE-----------cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-
Confidence 789999999999999999999865542 111 1235789999999999999998888888888764322
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc-------cCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-------SDIS 391 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-------~~~~ 391 (826)
.... +...........+++.++|.++++-+.++.+..+|...+.......-. ....
T Consensus 102 --------------~~~~---~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T d2p4oa1 102 --------------TVET---LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 164 (302)
T ss_dssp --------------CEEE---EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred --------------ceee---ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence 1111 222222345789999999988888888999999998877544211110 0111
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..+..+.+.. +..+++.+..+.|..++....
T Consensus 165 ~~~ngi~~~~-------~~l~~~~~~~~~i~~~~~~~~ 195 (302)
T d2p4oa1 165 PAANGLKRFG-------NFLYVSNTEKMLLLRIPVDST 195 (302)
T ss_dssp CSEEEEEEET-------TEEEEEETTTTEEEEEEBCTT
T ss_pred cccccccccC-------CceeeecCCCCeEEecccccc
Confidence 2233444432 445556667778887776643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.47 E-value=0.072 Score=53.80 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=110.6
Q ss_pred cCCCEEEEEEeeCCCeEEEec-C--Cc--EEEeccCCCceeecccccCC--ccee--eCCCCCEEEEEECC------CcE
Q 003360 191 LDSSITAMKLITGNSFILSSA-D--ED--YSLLAKSVPPLLDFETKLKD--GSQS--HSKVKNLFITGHSD------GAI 255 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d--~~--i~~w~~~~~~~~~~~~~h~g--~V~~--~s~~~~~l~Tgs~D------GtV 255 (826)
.......+++.++|+.+++.. + .. +...+.....+......... .... +.++|+++++.... |.+
T Consensus 80 ~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v 159 (319)
T d2dg1a1 80 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV 159 (319)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCccee
Confidence 344567899999998877753 2 22 22223322222222111111 1222 78899888775332 335
Q ss_pred EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 256 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
..++..+..... +. ..-...+.|+|+|+++.|.++ +..+.|..|++....... . .
T Consensus 160 ~~~~~dg~~~~~---~~--------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~----~---------~ 215 (319)
T d2dg1a1 160 YYVSPDFRTVTP---II--------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI----Q---------P 215 (319)
T ss_dssp EEECTTSCCEEE---EE--------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE----E---------E
T ss_pred EEEecccceeEE---Ee--------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee----c---------c
Confidence 555554433211 10 011245789999999876555 567889999987432110 0 0
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc---CCCCCeeEEEEeecccCCCCCcE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS---DISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.................|++..+|++.++....|.|.+||. .++.+....+.. .+...+++++|.+ +...
T Consensus 216 ~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~------~~~~ 288 (319)
T d2dg1a1 216 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP------GTNQ 288 (319)
T ss_dssp EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT------TSCE
T ss_pred ccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC------CCCE
Confidence 00000000111122567999999998888888999999997 677775555432 2344678899987 3556
Q ss_pred EEEEECC
Q 003360 412 LVIATKD 418 (826)
Q Consensus 412 l~sgs~D 418 (826)
+++.+.+
T Consensus 289 ~~~t~~~ 295 (319)
T d2dg1a1 289 LIICSND 295 (319)
T ss_dssp EEEEEEC
T ss_pred EEEEcCC
Confidence 6665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.47 E-value=0.072 Score=53.76 Aligned_cols=209 Identities=10% Similarity=0.065 Sum_probs=117.4
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC--Cc--EEEEeCCCCce
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD--GA--INFWDVSCPLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D--Gt--VriWD~s~~~~ 265 (826)
-.+..++|.++|+..++.. .+.|..|+..............++... ++++|+++++...+ .. |...+..+..+
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 3456788999998666655 777777765543333321223333334 88999988886543 23 33344444332
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG----MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg----~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
..+ ... .........+.+.+++++.++..... .-.+|.+. +++.... .
T Consensus 120 ~~~--~~~------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~----------------~dg~~~~---~- 171 (319)
T d2dg1a1 120 QDI--IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS----------------PDFRTVT---P- 171 (319)
T ss_dssp EEE--ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC----------------TTSCCEE---E-
T ss_pred eee--ccC------CCcccCCcceeEEeccceeecccccccccCcceeEEEe----------------cccceeE---E-
Confidence 111 110 01124678899999998666543211 12234333 2222211 0
Q ss_pred EeeccCCeEEEEEccCCCEEE-EEecCCeEEEEecCCCe-eEEe--e--ecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLA-VGSDQGYVYLLDTEGPT-VLYQ--K--HIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~la-sGs~dG~V~vwD~~~~~-~l~~--~--~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
....-.....|+|+++++.|. +-+..+.|..||+.... .... . ..........-.+++.. ++++.++.
T Consensus 172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~------~G~l~Va~ 245 (319)
T d2dg1a1 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS------DDNLYVAM 245 (319)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT------TCCEEEEE
T ss_pred EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC------CCCEEEEE
Confidence 111122357899999998664 44567899999986431 1110 0 10011112245677776 57777777
Q ss_pred ECCCcEEEEECCCCceEEeee
Q 003360 416 TKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+.|.+||.. |+.+..+.
T Consensus 246 ~~~g~V~~~~p~-G~~l~~i~ 265 (319)
T d2dg1a1 246 YGQGRVLVFNKR-GYPIGQIL 265 (319)
T ss_dssp ETTTEEEEECTT-SCEEEEEE
T ss_pred cCCCEEEEECCC-CcEEEEEe
Confidence 788999999974 99887754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.43 E-value=0.045 Score=55.27 Aligned_cols=222 Identities=11% Similarity=0.073 Sum_probs=117.9
Q ss_pred CCEEEEEEeeCCCeEEEec--------CCcEEEeccCCCceeeccccc---CCccee---eCCCCCEEEEEECCCcEEEE
Q 003360 193 SSITAMKLITGNSFILSSA--------DEDYSLLAKSVPPLLDFETKL---KDGSQS---HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--------d~~i~~w~~~~~~~~~~~~~h---~g~V~~---~s~~~~~l~Tgs~DGtVriW 258 (826)
+..-..+|.++|+..++.. ++.|..|+........+..+. .++.+. +.++++.|+++...+.|...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 3445678899998877643 244666655443333221211 122232 88999888888777778888
Q ss_pred eCCCCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|..+..... +... ..... ...+.++|.+++.+.++-.. +.+..|+...........+ ....+++....
T Consensus 98 ~~~g~~~~~---~~~~----~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~~~~~G~v--~~~~~dg~~~~- 166 (314)
T d1pjxa_ 98 QTDGTFEEI---AKKD----SEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSMQEKFGSI--YCFTTDGQMIQ- 166 (314)
T ss_dssp ETTSCEEEC---CSBC----TTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTTSSSCEEE--EEECTTSCEEE-
T ss_pred eCCCcEEEE---Eecc----ccccccCCCcEEEECCCCCEEEecCc-cCcccccccceeccCCceE--EEEeecCceeE-
Confidence 986654211 1100 01111 24578999999987765422 1111111111000000001 11123333321
Q ss_pred EEEEEeeccCCeEEEEEccCCC-----EEEEEecCCeEEEEecCCCeeEEeee----cccCCCCCeeEEEEeecccCCCC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQ-----HLAVGSDQGYVYLLDTEGPTVLYQKH----IASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~-----~lasGs~dG~V~vwD~~~~~~l~~~~----~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
....-..-..++|++++. +.++-+..+.|..||+.....+.... .........-.+++.. +
T Consensus 167 ----~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~------~ 236 (314)
T d1pjxa_ 167 ----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE------D 236 (314)
T ss_dssp ----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT------T
T ss_pred ----eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec------C
Confidence 111122346789988764 44555678889988876443331111 1111222345677776 5
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEee
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+++.++....+.|.+||..+++.+..+
T Consensus 237 GnlyVa~~~~g~I~~~dp~~g~~~~~i 263 (314)
T d1pjxa_ 237 NNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp CCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred CcEEEEEcCCCEEEEEeCCCCEEEEEE
Confidence 777666667889999999988766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.36 E-value=0.016 Score=58.85 Aligned_cols=197 Identities=8% Similarity=0.064 Sum_probs=111.4
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCC----ccee--eCCCCCEEEEEEC---------------C
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKD----GSQS--HSKVKNLFITGHS---------------D 252 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g----~V~~--~s~~~~~l~Tgs~---------------D 252 (826)
-..+.|.+++..++++. ...+...+..............+ .... +.++|++++|-.. +
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 35688999998777765 44455544333221111111111 1222 7888998887532 2
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-----EEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-----VLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-----~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
|.|..++..+....... .-..-+.++|+|++. ++++-+..+.|..|++...... ..
T Consensus 153 G~v~~~~~dg~~~~~~~------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-----~~-- 213 (314)
T d1pjxa_ 153 GSIYCFTTDGQMIQVDT------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-----EN-- 213 (314)
T ss_dssp EEEEEECTTSCEEEEEE------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-----EE--
T ss_pred ceEEEEeecCceeEeeC------------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc-----ce--
Confidence 33444444333321111 112346789998764 4445566788888887632110 00
Q ss_pred ecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 328 GSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
.... .... ...+....|++..+|++.++....+.|.+||..++..+..... ....+++++|.+
T Consensus 214 -----~~~~---~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t~~afg~----- 277 (314)
T d1pjxa_ 214 -----KKVW---GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKP----- 277 (314)
T ss_dssp -----EEEE---EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECT-----
T ss_pred -----eeEE---EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEEEEEEeC-----
Confidence 0000 0000 0122356799999999888878889999999988776543432 234678999987
Q ss_pred CCCcEEEE-EECCCcEEEEECC
Q 003360 407 FEKNFLVI-ATKDSSVLVLDSD 427 (826)
Q Consensus 407 ~d~~~l~s-gs~Dg~V~iwd~~ 427 (826)
|+..|++ .+.+++|..++..
T Consensus 278 -d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 278 -QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp -TSSEEEEEETTTTEEEEEECS
T ss_pred -CCCEEEEEECCCCcEEEEECC
Confidence 5665554 4556788887765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.015 Score=56.75 Aligned_cols=93 Identities=6% Similarity=-0.009 Sum_probs=56.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEECC---CcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD---GAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD 259 (826)
..+........++|++..++... .+...+| +........ ..+.+.... |+|||+.|+-.+.. ..+.+|+
T Consensus 167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE--CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ecccccccccccccccceeEEEeecCCceeeeEeecccccceE--eecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 44556677788999999998865 4455555 333222222 223344444 99999987654432 4678888
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
+.+..... + ......+...+|+|-
T Consensus 245 ~dg~~~~~---l--------t~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 245 TDGRFKAR---L--------PATDGQVKFPAWSPY 268 (269)
T ss_dssp TTSCCEEE---C--------CCSSSEEEEEEECCC
T ss_pred CCCCCEEE---E--------eCCCCcEEeEEeCCC
Confidence 86665311 2 123356778889883
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.00 E-value=0.21 Score=49.60 Aligned_cols=190 Identities=12% Similarity=0.033 Sum_probs=107.9
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccc--ccCC--ccee--eCCCCCEEEEEECC----CcEEEEeCCC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET--KLKD--GSQS--HSKVKNLFITGHSD----GAINFWDVSC 262 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~--~h~g--~V~~--~s~~~~~l~Tgs~D----GtVriWD~s~ 262 (826)
..+.++++.+++..+++..++ +..++........+.. .... .... +.++|++.++...+ +.-.+|....
T Consensus 59 ~~~~~i~~~~dg~l~va~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~ 137 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK 137 (295)
T ss_dssp SCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred CCcEEEEEecCCCEEEEEeCc-cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence 467889999998777665455 4455544333332211 1111 1222 78899877765432 2334555522
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
..... +. ..-..-+.++|++++..|.. -+..+.|..|++.......... .... +.
T Consensus 138 g~~~~---~~--------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~----------~~~~---~~ 193 (295)
T d2ghsa1 138 GKVTK---LF--------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----------AEVF---ID 193 (295)
T ss_dssp TEEEE---EE--------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----------CEEE---EE
T ss_pred CcEEE---Ee--------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc----------eEEE---ec
Confidence 22111 11 01124578999999986655 4557788888876432211000 0000 11
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
.....+....+++..+|.+.++....|.|..||. .++.+....+.. ..+++++|.-. |.+.|++.|
T Consensus 194 ~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~---~~~T~~~FGG~-----d~~~LyvTt 259 (295)
T d2ghsa1 194 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG---KQTTCPAFIGP-----DASRLLVTS 259 (295)
T ss_dssp CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC---SBEEEEEEEST-----TSCEEEEEE
T ss_pred cCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC---CceEEEEEeCC-----CCCEEEEEE
Confidence 1112344788999999988777778889999996 566775555432 36899999742 455565544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.032 Score=59.88 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=60.5
Q ss_pred EeeCCCeEEEecCCcEEEeccCCCceeecccc---cCCccee--eCCCCCEEEEEEC---------CCcEEEEeCCCCce
Q 003360 200 LITGNSFILSSADEDYSLLAKSVPPLLDFETK---LKDGSQS--HSKVKNLFITGHS---------DGAINFWDVSCPLF 265 (826)
Q Consensus 200 fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~---h~g~V~~--~s~~~~~l~Tgs~---------DGtVriWD~s~~~~ 265 (826)
|.+++.++....++.+.+|+........+... ..-.+.. ++||+++++.... .+.+.++|+.....
T Consensus 24 W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~ 103 (465)
T d1xfda1 24 WISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (465)
T ss_dssp BSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred EeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce
Confidence 55566555444467788886544332222111 1123333 8999998877643 46677888844442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
.. +... ......+....|||+|+.+|-.. ++.|.+.+...
T Consensus 104 ~~---l~~~-----~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 104 QS---LDPP-----EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp EE---CCCT-----TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred ee---ccCc-----cCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence 22 2110 11224556688999999988764 45676666653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.98 E-value=0.65 Score=44.31 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=53.9
Q ss_pred EeeC--CCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE-CCC-----cEEEEeCCCCceeeee
Q 003360 200 LITG--NSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH-SDG-----AINFWDVSCPLFLLIL 269 (826)
Q Consensus 200 fs~~--~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DG-----tVriWD~s~~~~~~i~ 269 (826)
.+|+ |+.++-..++.+-+.+........+ ..+.+.+.. |+|||+.||-.. .++ .|.++++.+.....+.
T Consensus 6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~L-t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTRKI-VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp EEEEEETTEEEEEETTEEEEEETTTCCEEEE-ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred cCCCCCCCEEEEEeCCcEEEEECCCCCEEEE-ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence 4677 7777766655443334444444444 334455544 999999887543 232 2555666555432211
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.... . ............|+|+++.|+....
T Consensus 85 ~~~~---~-~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 85 YFSG---K-STGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp CCCE---E-EETTEECSEEEEECTTCCEEEEECT
T ss_pred ecCC---C-ccCccccccccccCCCCCEEEEEEc
Confidence 1110 0 0011135678899999998887533
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.029 Score=60.21 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=89.8
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe---------CCCcEEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD---------QSGMVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs---------~dg~V~i 309 (826)
|.+++.++.. ..||.|.+||+.......+.... ......+....|+||++.++.+. ..+.+.+
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-------KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-------TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCc-------cccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence 6666665543 45789999999333322211111 12234567788999999888764 3567888
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~ 389 (826)
||+.++.... +.. .....+.+....|||+|+.||... ++.|.+.+..++..+.... .+
T Consensus 96 ~d~~~~~~~~------l~~-------------~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~--~g 153 (465)
T d1xfda1 96 SKIPHGDPQS------LDP-------------PEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS--TG 153 (465)
T ss_dssp EESSSCCCEE------CCC-------------TTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC--CC
T ss_pred EEccCCceee------ccC-------------ccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec--cc
Confidence 8887553210 000 001123456678999999999876 5578888887765542221 11
Q ss_pred CCC-----------------CeeEEEEeecccCCCCCcEEEEEEC-CCcEEEEE
Q 003360 390 ISS-----------------GIVSLQFETCSLQGFEKNFLVIATK-DSSVLVLD 425 (826)
Q Consensus 390 ~~~-----------------~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd 425 (826)
... .-..+.|+| ||.+|+.... +..|..+.
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSP------Dgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSP------DGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECT------TSSEEEEEEEECTTSCEEE
T ss_pred CcceeeccccchhhhhhhccccceEEECC------CCCeEEEEEecccccceee
Confidence 111 124567888 7888887764 44455544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.38 E-value=1.4 Score=43.09 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=107.4
Q ss_pred EeeC-CCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 200 LITG-NSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 200 fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
|.+. +...++-- .+.|..|+........+ .....+.+ +.++++++++ ..+ -|.++|........+.....
T Consensus 25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~-- 98 (295)
T d2ghsa1 25 FDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES-- 98 (295)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST--
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCeEEEE--ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec--
Confidence 5543 33334433 55666665444333322 22333444 6677777665 455 48889986555433332221
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGDQ----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs~----dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
......++.+.+.|++++.++... .+.-.+|++.. +... .....-..-..
T Consensus 99 ----~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----------------g~~~-----~~~~~~~~~Ng 152 (295)
T d2ghsa1 99 ----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----------------GKVT-----KLFADISIPNS 152 (295)
T ss_dssp ----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----------------TEEE-----EEEEEESSEEE
T ss_pred ----CCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-----------------CcEE-----EEeeccCCcce
Confidence 112246888999999987665432 22334555542 2111 11111223578
Q ss_pred EEEccCCCEEE-EEecCCeEEEEecCCCeeE-----EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 352 LNMNRNSQHLA-VGSDQGYVYLLDTEGPTVL-----YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 352 l~~s~~g~~la-sGs~dG~V~vwD~~~~~~l-----~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++|++++..+. +-+..+.|..+++...... .......+.....-.+++.. ++++.++.-..+.|..||
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~------~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------EGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT------TSCEEEEEETTTEEEEEC
T ss_pred eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC------CCCEEeeeeCCCceEEec
Confidence 99999998665 4556788888887422111 00111112233456677665 466555545677899999
Q ss_pred CCCCceEEeee
Q 003360 426 SDNGNMLSTNL 436 (826)
Q Consensus 426 ~~tg~~i~~~~ 436 (826)
.. |+.+..+.
T Consensus 227 p~-G~~~~~i~ 236 (295)
T d2ghsa1 227 TD-GNHIARYE 236 (295)
T ss_dssp TT-CCEEEEEE
T ss_pred CC-CcEeeEec
Confidence 65 88887753
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.46 E-value=0.85 Score=43.41 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=32.6
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEe
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS 210 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~ 210 (826)
++....|.|+++|...- .+..|..+...+...+|||||+.++..
T Consensus 15 v~f~~~~dl~~~d~~~g------------------~~~~Lt~~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 15 IIFVCCDDLWEHDLKSG------------------STRKIVSNLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp EEEEETTEEEEEETTTC------------------CEEEEECSSSEEEEEEECTTSSEEEEE
T ss_pred EEEEeCCcEEEEECCCC------------------CEEEEecCCCcccCEEECCCCCEEEEE
Confidence 44557789999887651 133456677788899999999999864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.73 E-value=7.1 Score=37.02 Aligned_cols=205 Identities=11% Similarity=0.001 Sum_probs=115.6
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCce
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
+...+..++|....+.+..+. .+.|............+...-.+.+.+ +. ..++++.+-...+.|.+.++.+...
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 334577788887776665543 555655433322222221111122333 44 3455667777788999999865542
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
.. +. ...-..+..|+++|...+|...... +..+||..... +.... .....
T Consensus 114 ~~---l~-------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d----------------G~~~~---~i~~~ 164 (263)
T d1npea_ 114 RV---LF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD----------------GTNRR---ILAQD 164 (263)
T ss_dssp EE---EE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT----------------SCCCE---EEECT
T ss_pred EE---Ee-------cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC----------------CCCce---eeeee
Confidence 11 11 1112467899999988877755433 34456655421 11100 00111
Q ss_pred ccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 345 INGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.-...++|++.+.+++|... ...+.|...|+.+........ +.. ...+|++.. +.+.++-...+.|..
T Consensus 165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~---~~~-~P~~lav~~-------~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQ-YPFAVTSYG-------KNLYYTDWKTNSVIA 233 (263)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCC-SEEEEEEET-------TEEEEEETTTTEEEE
T ss_pred cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC---CCC-CcEEEEEEC-------CEEEEEECCCCEEEE
Confidence 12346889999888777655 467889999997655432221 222 234565542 444555556789999
Q ss_pred EECCCCceEEee
Q 003360 424 LDSDNGNMLSTN 435 (826)
Q Consensus 424 wd~~tg~~i~~~ 435 (826)
.|..+|+.+..+
T Consensus 234 ~~~~~g~~~~~~ 245 (263)
T d1npea_ 234 MDLAISKEMDTF 245 (263)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCccceEE
Confidence 999988877663
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.57 E-value=1.9 Score=46.80 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
.|.|.-+|+.+++++.+........+.+ ... .+.++++|+.||.++.+|..||+.+-++......
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~----lst------agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~ 529 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGV----LAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCC----EEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccce----eEE------cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc
Confidence 3778889999999997665322211111 112 3778999999999999999999999887544333
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.76 E-value=3.8 Score=44.07 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=31.4
Q ss_pred cCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 356 RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 356 ~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
-.|.+|++|+.||.++.+|.++++.+.++.+..+..+.
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~ 523 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcccc
Confidence 36778889999999999999999999888876554443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.99 E-value=19 Score=35.30 Aligned_cols=32 Identities=3% Similarity=0.007 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCEEEEE-ecCCeEEEEecCCCe
Q 003360 348 SIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPT 379 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~ 379 (826)
....|+++|++++|.++ +..+.|++|++....
T Consensus 207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 207 FANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 47889999999877655 467889999987554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=83.22 E-value=5.2 Score=42.79 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=31.8
Q ss_pred ccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 355 NRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 355 s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
+-.+.+|++|+.||.++.+|..+++.+.+..+.......
T Consensus 466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~ 504 (560)
T d1kv9a2 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (560)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcccc
Confidence 345678889999999999999999999888876554443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=82.11 E-value=2.1 Score=42.98 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=58.7
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+.+||........+-.+. ..+........+.+++.+++.|+.+ ..+.+||..++....
T Consensus 54 ~~~yd~~t~~w~~~~~~~-------~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-------------- 112 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTV-------TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-------------- 112 (387)
T ss_dssp EEEECTTTCCBCCCEEEE-------CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE--------------
T ss_pred EEEEECCCCcEeecCCCC-------CCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccc--------------
Confidence 678999555431111111 1122223456788999999998766 589999987542210
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC------CeEEEEecCCCeeE
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ------GYVYLLDTEGPTVL 381 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d------G~V~vwD~~~~~~l 381 (826)
.........-.+.+..++|+++++|+.+ ..+.+||+.+.+-.
T Consensus 113 ------~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 113 ------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp ------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ------cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence 0000111123345667789888888743 35889999877643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.87 E-value=16 Score=38.73 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
.|.|.-+|+.+++++.+........+.+ ... .+.++++|+.|+.++.+|.+||+.+-.+......
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~T------agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~ 507 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGT----LYT------KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBC----EEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cccEEEeccCCCceeeEcCCCCCCCcce----eEe------cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence 3678899999999987665322211111 111 2678889999999999999999999887544333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=80.07 E-value=11 Score=39.99 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccC
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHP 439 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~ 439 (826)
|.|.-||+.+++++.+........+.+ ... .+.++++|+.||.++.+|..||+.+-++....
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~----l~T------agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~ 499 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGT----LST------AGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCE----EEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCce----eEE------CCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence 678889999999997665432211111 122 37789999999999999999999998875443
|