Citrus Sinensis ID: 003405

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820---
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTSHP
ccccccccccccccccccEEEEEEEccEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHcccccccccEEEEEEEcccEEEEEcccEEEEEccccccHHHHHccccccEEcccccccEEEEEEccEEEEEEEEccccEEEEEEEccccccEEEEEEccEEEEEEcccEEEEEcccccEEcccccccccccEEEEccccEEEEEEccEEEEEEccccccccccEEEccccccEEEcccEEEEEcccEEEEEEcccccEEEEEEEEccccccccccccEEEEccccEEEEEcccHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccc
ccccccccEEHHcccccEEEEEEEcccEEEEEccccEEEEEEEccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccEEEEEcccEEEEEcccccccHHHHHccccEEEEEcccccEEEEEEEEEEEEEEEccccccEEEEEEEcccccEEEEEcccEEEEEEcccEEEEEEccccEEEccccccccccEEEEccccEEEEEcccEEEEEEcccccccccccccccccHEEEEcccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccEEEEEcccEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHcHHHccccccccccccHHcccccccccccccccccccccccccHHHcccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccHHHHHcHHHHHccHHHcEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccEEEEcHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccEEccccc
mvhnafdslelisncspkiDAVASYGLKILLGcsdgslkiyspgssesdrsppsdyqsLRKESYELERtisgfskkpilSMEVLASRQLLLSLSEsiafhrlpnleTIAVLTKAkganvyswddrrgfLCFARQKRVcifrhdggrgfvevkdfgvpdtvksmswcgeNICIAIRKGYMILNatngalsevfpsgrigppLVVSLLSGelllgkenigvfvdqngkllqadricwseapIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSifglfpvplgaQIVQLTASGDFEEALALCkllppedasLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALslypsivlpkttvvpeperlldissdapslsrgssgmsddmessppaqlseldenatlkskkmSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAvgdnftshdstrfkksskgrgtipmysGAREMAAILDTALLQALLLTGQSSAALELLkglnycdvKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEesksnqsqdehtqkfnpeSIIEYLkplcgtdpmLVLEFSMLVLescptqtielFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQqkwdekayspTRKKLLSALESisgynpevllkrlpadaLYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLlrlmpsrsyiwKGFFVGTSHP
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIyspgssesdrsppsdYQSLRKESYELERTisgfskkpilSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIfrhdggrgfvevkdfgvpdtvksmsWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLpkttvvpeperlldissdapslsRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKAtaegteevvldavgdnftshdstrfkksskgrgtiPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEesksnqsqdehtqkfnPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTSHP
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGpplvvsllsgelllgkeNIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPslsrgssgmsddmessPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMaaildtallqallltgqssaalELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTSHP
*******SLELISNCSPKIDAVASYGLKILLGCSDGSLKIY*******************************F*KKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVV*****************************************************LMALIKFLQKK**SII*********EVVLDAV***********************MYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLH**********************SIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVG****
*VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPG******************************KKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEAL*****************EGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPE******************************************KSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTS**********************REMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLD*****************PTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMA******************VLQATIIKLFFSSLLRLMPSRSYIWKGFFVGT***
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIY******************RKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSD**********************LSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSH************GTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVE*************KFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTSHP
**HNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSS************LRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKT*********************************************TLKSKKMSHNTLMALIKFLQKKRSSIIEKATA******************************GTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES*********TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTS**
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MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATIIKLFFSSLLRLMPSRSYIWKGFFVGTSHP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query823 2.2.26 [Sep-21-2011]
Q8R5L3 886 Vam6/Vps39-like protein O yes no 0.827 0.768 0.287 3e-70
Q96JC1 886 Vam6/Vps39-like protein O yes no 0.828 0.769 0.286 2e-68
A4IG72 863 Transforming growth facto no no 0.712 0.679 0.257 7e-25
Q8WUH2 860 Transforming growth facto no no 0.725 0.694 0.264 7e-25
A7MB11 859 Transforming growth facto no no 0.617 0.591 0.255 3e-23
Q3UR70 860 Transforming growth facto no no 0.716 0.686 0.255 1e-21
O13955905 Vacuolar morphogenesis pr yes no 0.842 0.765 0.215 6e-18
Q54EH31031 GTPase-activating protein no no 0.182 0.145 0.236 3e-06
Q07468 1049 Vacuolar morphogenesis pr yes no 0.246 0.193 0.257 5e-06
Q6DT371551 Serine/threonine-protein no no 0.247 0.131 0.237 6e-05
>sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1 Back     alignment and function desciption
 Score =  266 bits (681), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 225/782 (28%), Positives = 388/782 (49%), Gaps = 101/782 (12%)

Query: 2   VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSS--ESDRSPPSDYQSL 59
           +H+AF+ + ++     +ID +A++   +L+G   G L +Y        +D + P      
Sbjct: 1   MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60

Query: 60  RKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGAN 118
           R E   LE++   FSKK I  + V++  ++L+SL E+ I  H L   + I  ++KAKGA+
Sbjct: 61  RFE-VTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGAS 118

Query: 119 VYSWDDRRG-------FLCFARQKRVCIFRHDGGRGFVEVK-DFGVPDTVKSMSWCGENI 170
           +++ D +          +C A +K++ ++     R F E++ DF VPD  KSM+WC  +I
Sbjct: 119 LFTCDLQHTETGEEVLRMCVAVRKKLQLYFWKD-REFHELQGDFSVPDVPKSMAWCENSI 177

Query: 171 CIAIRKGYMILNAT-NGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQ 229
           C+  ++ Y ++     G++ E+FP+G+   PLV  L  G++ +G++++ V +++ G   Q
Sbjct: 178 CVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQ 237

Query: 230 ADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIP-SSNAVV 288
              + W++ P+A+  Q PY +A+LPR VE+R+L  P  L+Q+I LQ  R +    SN + 
Sbjct: 238 KCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLE-PRLLVQSIELQRPRFITSGGSNIIY 296

Query: 289 VALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIR--FA 346
           VA  + ++ L PVP+  QI QL     FE AL L ++   +D S    ++   HI+  +A
Sbjct: 297 VASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSDSEKQQQIHHIKNLYA 353

Query: 347 HYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRG 406
             LF    ++E+M+ F     D T+ + LYP + LP      +  + L   +  P+LS  
Sbjct: 354 FNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYRKQLQYPNPLPTLSG- 406

Query: 407 SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEE 466
                           +EL++         +H   +ALI +L +KRS +++K        
Sbjct: 407 ----------------AELEK---------AH---LALIDYLTQKRSQLVKKL------- 431

Query: 467 VVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALE 526
                   N + H S+    S    GT P     +++  I+DT LL+  L T  +  A  
Sbjct: 432 --------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTLLKCYLHTNVALVAPL 479

Query: 527 LLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES-KSNQSQDEH 585
           L    N+C ++  E +L+K + Y+ L+ LY+    H +AL++   LV++S K+N     H
Sbjct: 480 LRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQV---LVDQSKKANSPLKGH 536

Query: 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSG-----NIPADLVNS 640
                 E  ++YL+ L   +  L+  +S+ VL   P   +++F        ++P D V +
Sbjct: 537 ------ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLN 590

Query: 641 YLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDL---------SAQ 691
           +L +   ++   YLE ++ + E +      N ++Q+Y  +V     D             
Sbjct: 591 FLIENFKALAIPYLEHIIHVWEET-GSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVP 649

Query: 692 QKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLY 751
              +       R+KLL  LE  S Y+P  L+   P D L EERA+LLG+M +HE AL +Y
Sbjct: 650 AGEEGGELGEYRQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIY 709

Query: 752 VH 753
           VH
Sbjct: 710 VH 711
May play a role in clustering and fusion of late endosomes and lysosomes.
Mus musculus (taxid: 10090)
>sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2 Back     alignment and function description
>sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1 Back     alignment and function description
>sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1 Back     alignment and function description
>sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1 Back     alignment and function description
>sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1 Back     alignment and function description
>sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum GN=DDB_G0291510 PE=4 SV=1 Back     alignment and function description
>sp|Q07468|VAM6_YEAST Vacuolar morphogenesis protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM6 PE=1 SV=1 Back     alignment and function description
>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma OS=Homo sapiens GN=CDC42BPG PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query823
224134292 1008 predicted protein [Populus trichocarpa] 0.919 0.750 0.817 0.0
255561166 972 conserved hypothetical protein [Ricinus 0.876 0.741 0.798 0.0
225430766 1006 PREDICTED: vam6/Vps39-like protein [Viti 0.919 0.752 0.803 0.0
449462842 996 PREDICTED: vam6/Vps39-like protein-like 0.904 0.746 0.781 0.0
449517638 996 PREDICTED: LOW QUALITY PROTEIN: vam6/Vps 0.904 0.746 0.777 0.0
297798238 1000 hypothetical protein ARALYDRAFT_490975 [ 0.911 0.75 0.749 0.0
240256190 1000 Vacuolar sorting protein 39 [Arabidopsis 0.911 0.75 0.747 0.0
356496767 989 PREDICTED: vam6/Vps39-like protein-like 0.899 0.748 0.756 0.0
356538190 989 PREDICTED: vam6/Vps39-like protein-like 0.901 0.750 0.752 0.0
297735158 924 unnamed protein product [Vitis vinifera] 0.822 0.732 0.828 0.0
>gi|224134292|ref|XP_002327802.1| predicted protein [Populus trichocarpa] gi|222836887|gb|EEE75280.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1269 bits (3283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/761 (81%), Positives = 693/761 (91%), Gaps = 4/761 (0%)

Query: 1   MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQS-- 58
           MVHNA+DS EL++NC  KIDA+ SYG K+L+ CSDG+L+IY+P S+ SD+SPPSDY +  
Sbjct: 1   MVHNAYDSFELLTNCPNKIDAIESYGSKLLIACSDGALRIYAPVSAISDKSPPSDYHNHG 60

Query: 59  --LRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKG 116
             LRKE Y LERT++GFSKKP+LSM+VLASR+LLLSLSESIAFHRLPNLETIAVLTKAKG
Sbjct: 61  DQLRKEPYSLERTVNGFSKKPMLSMKVLASRELLLSLSESIAFHRLPNLETIAVLTKAKG 120

Query: 117 ANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRK 176
           ANV+ WDD+RGFLCFARQKRVCIFRHDGGRGFVEVKDFGV DTVKSMSWCGENIC+ IRK
Sbjct: 121 ANVFDWDDKRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVSDTVKSMSWCGENICLGIRK 180

Query: 177 GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWS 236
            Y ILN+TNGALS+VFPSGR+ PPLVVSL SGELLLGK+NIGVFVDQNGK LQA++ICWS
Sbjct: 181 EYWILNSTNGALSQVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKHLQAEKICWS 240

Query: 237 EAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIF 296
           EAP  V+IQK YAI+LLPRR+E+RSLRVPY+LIQ  VLQNVRHLI S+NA++VAL NS+ 
Sbjct: 241 EAPSLVVIQKSYAISLLPRRIEIRSLRVPYSLIQAFVLQNVRHLIESNNAIIVALSNSVR 300

Query: 297 GLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYE 356
            LFPVPLGAQIVQLTASG+FEEALALCKLLPPED++LRAAKEGSIHIR+AHYLFD GSYE
Sbjct: 301 ALFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNGSYE 360

Query: 357 EAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMES 416
           EAMEHFLASQVDI Y LSLYPSIVLPKT++VPE E+L+DIS DAP LSRGS G+SD ME 
Sbjct: 361 EAMEHFLASQVDIIYVLSLYPSIVLPKTSLVPEREKLIDISQDAPYLSRGSCGLSDIMEP 420

Query: 417 SPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNF 476
           SPP  LS+ DE++ L+SKKMSHNTLMALIK+LQK+R  I+EKATAEGT+EVVLDAVGDN+
Sbjct: 421 SPPIHLSDFDEHSALESKKMSHNTLMALIKYLQKRRFGIVEKATAEGTDEVVLDAVGDNY 480

Query: 477 TSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDV 536
             +DS RFKKS+KGRG I + SGAREMAAILDTALLQALLLTGQ+SAALELLKGLNYCD+
Sbjct: 481 GPYDSNRFKKSNKGRGNIAINSGAREMAAILDTALLQALLLTGQTSAALELLKGLNYCDL 540

Query: 537 KICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIE 596
           KICEEILQK NHYTALLELYK NA HREALKLLH+LVEESKSNQS+ E   KF PESI+E
Sbjct: 541 KICEEILQKWNHYTALLELYKCNAMHREALKLLHQLVEESKSNQSKPELNPKFKPESIVE 600

Query: 597 YLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLEL 656
           YLKPLC TDPMLVLEFSMLVLESCPTQTIEL LSGNIPADLVNSYLKQ++PSMQGRYLEL
Sbjct: 601 YLKPLCWTDPMLVLEFSMLVLESCPTQTIELLLSGNIPADLVNSYLKQHAPSMQGRYLEL 660

Query: 657 MLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGY 716
           ML MNEN ISGNLQNEMVQIYLSEVLDW+++L+AQ+KWDEKAYSPTR KLLSALESISGY
Sbjct: 661 MLVMNENGISGNLQNEMVQIYLSEVLDWHAELNAQEKWDEKAYSPTRNKLLSALESISGY 720

Query: 717 NPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFL 757
           NPE LLKRLPADALYEERA+LLGKMNQHELALSLYVHK+ +
Sbjct: 721 NPEALLKRLPADALYEERALLLGKMNQHELALSLYVHKLHV 761

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561166|ref|XP_002521595.1| conserved hypothetical protein [Ricinus communis] gi|223539273|gb|EEF40866.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225430766|ref|XP_002267514.1| PREDICTED: vam6/Vps39-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462842|ref|XP_004149149.1| PREDICTED: vam6/Vps39-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517638|ref|XP_004165852.1| PREDICTED: LOW QUALITY PROTEIN: vam6/Vps39-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297798238|ref|XP_002867003.1| hypothetical protein ARALYDRAFT_490975 [Arabidopsis lyrata subsp. lyrata] gi|297312839|gb|EFH43262.1| hypothetical protein ARALYDRAFT_490975 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240256190|ref|NP_195381.6| Vacuolar sorting protein 39 [Arabidopsis thaliana] gi|20466826|gb|AAM20730.1| unknown protein [Arabidopsis thaliana] gi|332661279|gb|AEE86679.1| Vacuolar sorting protein 39 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356496767|ref|XP_003517237.1| PREDICTED: vam6/Vps39-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356538190|ref|XP_003537587.1| PREDICTED: vam6/Vps39-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297735158|emb|CBI17520.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query823
TAIR|locus:2115355 1000 EMB2754 "EMBRYO DEFECTIVE 2754 0.911 0.75 0.683 8.3e-280
MGI|MGI:2443189886 Vps39 "vacuolar protein sortin 0.450 0.418 0.309 3.2e-57
UNIPROTKB|Q96JC1886 VPS39 "Vam6/Vps39-like protein 0.450 0.418 0.309 1.5e-56
ZFIN|ZDB-GENE-080530-2875 vps39 "vacuolar protein sortin 0.444 0.418 0.290 2.2e-56
UNIPROTKB|E9PT04875 Vps39 "Protein Vps39" [Rattus 0.439 0.413 0.308 3.5e-56
UNIPROTKB|E2RRH8887 VPS39 "Uncharacterized protein 0.452 0.419 0.306 4.4e-56
UNIPROTKB|F1SFK5875 VPS39 "Uncharacterized protein 0.439 0.413 0.308 3.3e-55
UNIPROTKB|F1NID0876 VPS39 "Uncharacterized protein 0.441 0.414 0.303 1.1e-54
UNIPROTKB|E1BM41875 VPS39 "Uncharacterized protein 0.439 0.413 0.310 1.2e-54
UNIPROTKB|E2RG39875 VPS39 "Uncharacterized protein 0.439 0.413 0.305 1.8e-54
TAIR|locus:2115355 EMB2754 "EMBRYO DEFECTIVE 2754" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2689 (951.6 bits), Expect = 8.3e-280, P = 8.3e-280
 Identities = 516/755 (68%), Positives = 615/755 (81%)

Query:     1 MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLR 60
             MVHNA+DS +L+ +C  +IDAV SYG K+  GC DGSL+IYSP   ES  S PS+   L 
Sbjct:     1 MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSP--PESSASDPSE---LH 55

Query:    61 KESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVY 120
             +E+Y LE+T++GFSKKPI++MEVLASR+LLLSLSESIAFH LPNLET+AV+TKAKGAN Y
Sbjct:    56 QETYVLEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAY 115

Query:   121 SWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI 180
             SWDDRRGFLCF+RQKRVC+F+HDGG GFVEV+D+GVPDTVKS+SWCGENIC+ I+K Y+I
Sbjct:   116 SWDDRRGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVI 175

Query:   181 LNATNGALSEVFPSGRIGXXXXXXXXXXXXXXXXXNIGVFVDQNGKLLQADRICWSEAPI 240
             LN  NG LSEVFPSGR+                  NIGVFVDQNGKLLQ +RICWSEAP 
Sbjct:   176 LNTANGTLSEVFPSGRVAPPLVISLPSGELILGKENIGVFVDQNGKLLQTERICWSEAPT 235

Query:   241 AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFP 300
             +++IQ PYAIALLPRRVEVR LR PY LIQTIVLQN+R L+ S+NAV+V L+NS++ LFP
Sbjct:   236 SIVIQNPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVKSNNAVIVGLDNSVYVLFP 295

Query:   301 VPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAME 360
             V +GAQIVQLTASG+FEEALALCK+LPP+++SLRAAKE SIH RFAHYLF+ GSYEEAME
Sbjct:   296 VSIGAQIVQLTASGNFEEALALCKVLPPDESSLRAAKESSIHTRFAHYLFENGSYEEAME 355

Query:   361 HFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPXXXXXXXXXXXXXXXXPPA 420
             HFLASQVDIT+ LS+YPSI+LPKTT++P+P++++DIS D                   P 
Sbjct:   356 HFLASQVDITHVLSMYPSIILPKTTIIPQPDKMVDISGDEASLSRGSSGISDDMESSSPR 415

Query:   421 QLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHD 480
                E ++NA L+SKKMSHNTLMALIK+L K+R ++IEKAT+EGTEEV+ DAVG  + ++D
Sbjct:   416 YFLESEDNADLESKKMSHNTLMALIKYLLKRRPAVIEKATSEGTEEVISDAVGKTYGAND 475

Query:   481 STRFKKSSKGRGTIPMYSGAREMXXXXXXXXXXXXXXXXXXXXXXELLKGLNYCDVKICE 540
             S++ KKSSKGRG IP+ SGAREM                      ELLKG+NY DVKICE
Sbjct:   476 SSKSKKSSKGRGMIPLNSGAREMAAILDTALLQALLHTGQSGAAIELLKGVNYSDVKICE 535

Query:   541 EILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKP 600
             EIL K  +Y+ALLEL+KSN+ H EALKLL++L +ESK+NQSQ + TQ F+PE IIEYLKP
Sbjct:   536 EILMKSKNYSALLELFKSNSMHHEALKLLNQLADESKTNQSQTDVTQIFSPELIIEYLKP 595

Query:   601 LCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAM 660
             LC TDPMLVLE+SMLVLESCPTQTI+LFLSGNI ADLVNSYLKQ++P+MQGRYLELM+AM
Sbjct:   596 LCRTDPMLVLEYSMLVLESCPTQTIDLFLSGNISADLVNSYLKQHAPNMQGRYLELMMAM 655

Query:   661 NENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEV 720
             N+ ++SGNLQNEMVQIYLSEVLD Y+  SAQQKWDEK + P RKKLLSALESISGY+P+ 
Sbjct:   656 NDTAVSGNLQNEMVQIYLSEVLDLYAAKSAQQKWDEKDHPPERKKLLSALESISGYSPQP 715

Query:   721 LLKRLPADALYEERAILLGKMNQHELALSLYVHKV 755
             LLKRLP DALYEERA++LGKMNQHELALS+YVHK+
Sbjct:   716 LLKRLPRDALYEERAVILGKMNQHELALSIYVHKL 750
GO:0005083 "small GTPase regulator activity" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0042732 "D-xylose metabolic process" evidence=RCA
MGI|MGI:2443189 Vps39 "vacuolar protein sorting 39 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q96JC1 VPS39 "Vam6/Vps39-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080530-2 vps39 "vacuolar protein sorting 39 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E9PT04 Vps39 "Protein Vps39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRH8 VPS39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFK5 VPS39 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NID0 VPS39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM41 VPS39 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RG39 VPS39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query823
pfam00780266 pfam00780, CNH, CNH domain 6e-32
pfam10366105 pfam10366, Vps39_1, Vacuolar sorting protein 39 do 3e-30
COG54221175 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange 1e-08
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 2e-05
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 0.001
smart00299140 smart00299, CLH, Clathrin heavy chain repeat homol 0.003
>gnl|CDD|216115 pfam00780, CNH, CNH domain Back     alignment and domain information 
 Score =  125 bits (315), Expect = 6e-32
 Identities = 62/288 (21%), Positives = 111/288 (38%), Gaps = 47/288 (16%)

Query: 21  AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS 80
             A+ G ++LLG  +G   +Y       +           +                +  
Sbjct: 2   CPATGGQRLLLGTEEG---LYL-----LNIDE----SGPVRIV----------KLFSVTQ 39

Query: 81  MEVLASRQLLLSLSE-SIAFHRLPNLETI--------AVLTKAKGANVYSWD--DRRGFL 129
           + VL    LLLSLS+  +  + L  L++           L + KG + ++        FL
Sbjct: 40  LAVLEEFNLLLSLSDKQLYVYPLSALDSKELSSKSAPQKLPETKGCSFFARAGYCGGRFL 99

Query: 130 CFARQKRVCIFRHDG--GRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGA 187
             A ++ + ++       +     K+F VP  V S+++    +C+   KG+ +++   GA
Sbjct: 100 VVAVKRTIKLYEWYEPLKKFHKLFKEFYVPAEVFSIAFLKPKLCVGCAKGFELVDLDTGA 159

Query: 188 LSEVFP-----------SGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWS 236
              +                + P  VV L   E LL  +   V+V+  G+  +   + W 
Sbjct: 160 TQSLLDPADQSLDFAARKENLKPLAVVRLSDDEFLLCYDEFAVYVNLQGRRSRDQELEWE 219

Query: 237 EAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSS 284
            AP +V    PY +A  P  +E+RS+     L+QTI    +R L   S
Sbjct: 220 GAPESVAYLYPYLLAFHPNFIEIRSVE-TGELVQTIPGPKIRFLHSGS 266

Domain found in NIK1-like kinase, mouse citron and yeast ROM1, ROM2. Unpublished observations. Length = 266
>gnl|CDD|220718 pfam10366, Vps39_1, Vacuolar sorting protein 39 domain 1 Back     alignment and domain information
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 823
KOG2063877 consensus Vacuolar assembly/sorting proteins VPS39 100.0
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 100.0
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 100.0
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 100.0
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 99.94
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 99.87
COG54221175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.84
KOG2034 911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 99.62
smart00299140 CLH Clathrin heavy chain repeat homology. 99.52
KOG43051029 consensus RhoGEF GTPase [Signal transduction mecha 99.5
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 99.33
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.59
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.58
KOG0294362 consensus WD40 repeat-containing protein [Function 98.35
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.25
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 98.24
KOG0576829 consensus Mitogen-activated protein kinase kinase 98.01
KOG2048691 consensus WD40 repeat protein [General function pr 97.88
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 97.85
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.82
KOG3621726 consensus WD40 repeat-containing protein [General 97.82
PF05131147 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPr 97.78
KOG1539910 consensus WD repeat protein [General function pred 97.72
KOG0289506 consensus mRNA splicing factor [General function p 97.63
KOG1273405 consensus WD40 repeat protein [General function pr 97.62
KOG0279315 consensus G protein beta subunit-like protein [Sig 97.6
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.51
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.48
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 97.48
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 97.48
KOG0310487 consensus Conserved WD40 repeat-containing protein 97.44
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.42
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.29
KOG1274933 consensus WD40 repeat protein [General function pr 97.23
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.22
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 97.15
KOG1274933 consensus WD40 repeat protein [General function pr 97.13
smart00299140 CLH Clathrin heavy chain repeat homology. 97.1
PTZ00420568 coronin; Provisional 97.09
PTZ00420568 coronin; Provisional 97.07
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.06
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 97.05
KOG0279315 consensus G protein beta subunit-like protein [Sig 97.02
KOG1407313 consensus WD40 repeat protein [Function unknown] 97.01
KOG0299479 consensus U3 snoRNP-associated protein (contains W 96.98
PRK11028330 6-phosphogluconolactonase; Provisional 96.98
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 96.91
KOG0318603 consensus WD40 repeat stress protein/actin interac 96.85
PTZ00421493 coronin; Provisional 96.84
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 96.77
KOG0275508 consensus Conserved WD40 repeat-containing protein 96.72
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 96.69
KOG0649325 consensus WD40 repeat protein [General function pr 96.61
PLN00181793 protein SPA1-RELATED; Provisional 96.54
KOG0318603 consensus WD40 repeat stress protein/actin interac 96.47
KOG0266456 consensus WD40 repeat-containing protein [General 96.46
KOG0587953 consensus Traf2- and Nck-interacting kinase and re 96.43
KOG0278334 consensus Serine/threonine kinase receptor-associa 96.39
KOG2111346 consensus Uncharacterized conserved protein, conta 96.34
KOG0646476 consensus WD40 repeat protein [General function pr 96.25
KOG2110391 consensus Uncharacterized conserved protein, conta 96.19
PLN00181793 protein SPA1-RELATED; Provisional 96.18
KOG0310487 consensus Conserved WD40 repeat-containing protein 96.18
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 96.16
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 96.14
KOG0772641 consensus Uncharacterized conserved protein, conta 96.09
PTZ00421493 coronin; Provisional 96.08
KOG2055514 consensus WD40 repeat protein [General function pr 96.03
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 96.0
KOG0266456 consensus WD40 repeat-containing protein [General 95.97
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 95.96
KOG2055514 consensus WD40 repeat protein [General function pr 95.9
KOG0646476 consensus WD40 repeat protein [General function pr 95.87
KOG2315566 consensus Predicted translation initiation factor 95.87
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 95.81
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 95.79
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.73
KOG0306888 consensus WD40-repeat-containing subunit of the 18 95.68
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 95.59
KOG1539910 consensus WD repeat protein [General function pred 95.57
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 95.48
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 95.32
KOG0647347 consensus mRNA export protein (contains WD40 repea 95.27
KOG0315311 consensus G-protein beta subunit-like protein (con 95.25
KOG2048691 consensus WD40 repeat protein [General function pr 95.22
KOG0294362 consensus WD40 repeat-containing protein [Function 95.21
KOG2106626 consensus Uncharacterized conserved protein, conta 95.02
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 95.02
PRK11028330 6-phosphogluconolactonase; Provisional 95.01
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 95.01
KOG0319775 consensus WD40-repeat-containing subunit of the 18 94.98
KOG0647347 consensus mRNA export protein (contains WD40 repea 94.92
KOG0772641 consensus Uncharacterized conserved protein, conta 94.9
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 94.84
KOG0288459 consensus WD40 repeat protein TipD [General functi 94.78
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 94.77
KOG0315311 consensus G-protein beta subunit-like protein (con 94.76
KOG0640430 consensus mRNA cleavage stimulating factor complex 94.73
KOG2106626 consensus Uncharacterized conserved protein, conta 94.71
KOG1188376 consensus WD40 repeat protein [General function pr 94.69
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 94.56
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 94.53
KOG2110391 consensus Uncharacterized conserved protein, conta 94.53
KOG0319775 consensus WD40-repeat-containing subunit of the 18 94.5
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 94.36
PF14727418 PHTB1_N: PTHB1 N-terminus 94.34
KOG0275508 consensus Conserved WD40 repeat-containing protein 94.3
KOG0296399 consensus Angio-associated migratory cell protein 94.21
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 94.14
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 94.04
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 94.03
PLN03077 857 Protein ECB2; Provisional 94.01
KOG0284464 consensus Polyadenylation factor I complex, subuni 93.91
KOG14451012 consensus Tumor-specific antigen (contains WD repe 93.91
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 93.88
KOG2076 895 consensus RNA polymerase III transcription factor 93.87
KOG2096420 consensus WD40 repeat protein [General function pr 93.86
KOG0284464 consensus Polyadenylation factor I complex, subuni 93.84
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 93.79
KOG0306888 consensus WD40-repeat-containing subunit of the 18 93.74
KOG0288459 consensus WD40 repeat protein TipD [General functi 93.69
KOG0293519 consensus WD40 repeat-containing protein [Function 93.44
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 93.41
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 93.35
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 93.22
KOG0263707 consensus Transcription initiation factor TFIID, s 93.19
KOG2139445 consensus WD40 repeat protein [General function pr 93.16
KOG12401431 consensus Protein kinase containing WD40 repeats [ 93.13
KOG0289506 consensus mRNA splicing factor [General function p 92.88
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 92.85
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 92.69
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 92.64
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 92.55
KOG1273405 consensus WD40 repeat protein [General function pr 92.46
KOG0639705 consensus Transducin-like enhancer of split protei 92.43
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 92.38
KOG0316307 consensus Conserved WD40 repeat-containing protein 92.38
KOG0973942 consensus Histone transcription regulator HIRA, WD 92.31
KOG0293519 consensus WD40 repeat-containing protein [Function 92.27
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 92.25
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 92.24
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 92.19
KOG0295406 consensus WD40 repeat-containing protein [Function 92.11
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 92.07
PLN03218 1060 maturation of RBCL 1; Provisional 92.06
KOG0282503 consensus mRNA splicing factor [Function unknown] 92.03
KOG0278334 consensus Serine/threonine kinase receptor-associa 91.99
PLN03218 1060 maturation of RBCL 1; Provisional 91.9
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 91.79
KOG0282503 consensus mRNA splicing factor [Function unknown] 91.75
KOG0649325 consensus WD40 repeat protein [General function pr 91.64
KOG0286343 consensus G-protein beta subunit [General function 91.63
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 91.48
KOG1272545 consensus WD40-repeat-containing subunit of the 18 91.45
KOG2096420 consensus WD40 repeat protein [General function pr 91.43
KOG0283712 consensus WD40 repeat-containing protein [Function 91.42
PF1234127 DUF3639: Protein of unknown function (DUF3639) ; I 91.3
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 91.19
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 91.18
KOG0316307 consensus Conserved WD40 repeat-containing protein 91.17
KOG2321703 consensus WD40 repeat protein [General function pr 91.16
PLN03077 857 Protein ECB2; Provisional 91.1
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 91.1
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 91.09
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 90.6
KOG0643327 consensus Translation initiation factor 3, subunit 90.58
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 90.53
KOG4328498 consensus WD40 protein [Function unknown] 90.39
KOG0771398 consensus Prolactin regulatory element-binding pro 90.15
KOG0283712 consensus WD40 repeat-containing protein [Function 90.11
KOG0643327 consensus Translation initiation factor 3, subunit 90.09
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 90.05
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 89.86
KOG15171387 consensus Guanine nucleotide binding protein MIP1 89.85
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 89.73
PRK10747398 putative protoheme IX biogenesis protein; Provisio 89.66
KOG0265338 consensus U5 snRNP-specific protein-like factor an 89.23
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 89.05
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 88.99
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 88.98
KOG0268433 consensus Sof1-like rRNA processing protein (conta 88.63
KOG2041 1189 consensus WD40 repeat protein [General function pr 88.57
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 88.43
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 88.39
KOG2321703 consensus WD40 repeat protein [General function pr 88.32
KOG0299479 consensus U3 snoRNP-associated protein (contains W 88.23
KOG0640430 consensus mRNA cleavage stimulating factor complex 88.04
KOG1407313 consensus WD40 repeat protein [Function unknown] 87.98
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 87.94
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 87.92
KOG14081080 consensus WD40 repeat protein [Function unknown] 87.69
KOG0269839 consensus WD40 repeat-containing protein [Function 87.65
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 87.58
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 87.52
KOG2139445 consensus WD40 repeat protein [General function pr 87.49
KOG0296399 consensus Angio-associated migratory cell protein 87.32
KOG0268433 consensus Sof1-like rRNA processing protein (conta 86.95
KOG0270463 consensus WD40 repeat-containing protein [Function 86.78
PF13512142 TPR_18: Tetratricopeptide repeat 86.67
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 86.5
KOG1188376 consensus WD40 repeat protein [General function pr 86.4
KOG14081080 consensus WD40 repeat protein [Function unknown] 86.32
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 86.12
COG4946668 Uncharacterized protein related to the periplasmic 84.94
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 84.76
KOG2111346 consensus Uncharacterized conserved protein, conta 84.7
KOG2034 911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 84.57
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 83.61
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 83.59
KOG0263707 consensus Transcription initiation factor TFIID, s 82.97
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 82.62
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 82.05
KOG41901034 consensus Uncharacterized conserved protein [Funct 81.83
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 81.71
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 81.62
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 81.36
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 81.29
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 81.11
KOG4283397 consensus Transcription-coupled repair protein CSA 80.91
PF1337173 TPR_9: Tetratricopeptide repeat 80.89
KOG18971096 consensus Damage-specific DNA binding complex, sub 80.6
KOG0265338 consensus U5 snRNP-specific protein-like factor an 80.57
KOG0313423 consensus Microtubule binding protein YTM1 (contai 80.38
PRK15174656 Vi polysaccharide export protein VexE; Provisional 80.25
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-87  Score=772.29  Aligned_cols=701  Identities=36%  Similarity=0.566  Sum_probs=568.8

Q ss_pred             CCCcccccccccCCCCcEE-EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeE
Q 003405            2 VHNAFDSLELISNCSPKID-AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS   80 (823)
Q Consensus         2 ~~~af~~~~l~~~~~~~I~-ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~q   80 (823)
                      ||.||.++++...+|..|+ |+++||+.||+||.+|.|++|.+.+...+.++.     .-..++.+   .+.++|+||++
T Consensus         1 m~~a~~~~~i~~~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~-----~~~~~~~~---~~~~~kk~i~~   72 (877)
T KOG2063|consen    1 MHKAFTLVEILERLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVE-----LVTETVKF---EKEFSKKPINK   72 (877)
T ss_pred             CCcccchhhHhhhcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchh-----hhcchhHH---hhhhccchhHH
Confidence            8999999999999999999 999999999999999999999988765543210     00001111   23467899999


Q ss_pred             EEEecccCceeeEeCc-EEEEeCCCCcccccccCCCCcEEEEeeCCC---c----eEEEEEcCeEEEEEEcCCCceeEee
Q 003405           81 MEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRR---G----FLCFARQKRVCIFRHDGGRGFVEVK  152 (823)
Q Consensus        81 I~~~~~~~~Ll~l~d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~---~----~l~V~~kkki~l~~~~~~~~f~~~k  152 (823)
                      |.+++..+++++++|+ +.+|.++++++.+...+.||++.|+.+..+   +    .+|+..++++..|.|.++..+...+
T Consensus        73 l~~~~~~~~ll~l~dsqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~  152 (877)
T KOG2063|consen   73 LLVCASLELLLILSDSQIAVHKLPELEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVK  152 (877)
T ss_pred             HhhcchhcchheecCCcceeeecCcccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEE
Confidence            9999999999999995 999999999998888999999999997654   4    5888889999999999755677888


Q ss_pred             eecCCCCceEEEecCCeEEEEEcCceEEEEcCC-CCeeeccCCC---CCCCCEEEEccCC-eEEEEeCCeEEEEcCCCcc
Q 003405          153 DFGVPDTVKSMSWCGENICIAIRKGYMILNATN-GALSEVFPSG---RIGPPLVVSLLSG-ELLLGKENIGVFVDQNGKL  227 (823)
Q Consensus       153 ei~~~~~~~~l~~~~~~i~v~~~~~y~lidl~~-~~~~~L~~~~---~~~~p~i~~~~~~-EfLL~~~~~gvfv~~~G~~  227 (823)
                      ++.+|+.|.+++|.|..+|+|..+.|++++..+ |....+++.+   .+..|+|+++.++ ++++|+|+.|+|||.+|..
T Consensus       153 ~~~~~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~  232 (877)
T KOG2063|consen  153 ELGFPDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGII  232 (877)
T ss_pred             ecccccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcc
Confidence            999999999999999999999998888888764 4455566665   4568999999998 8899999999999999998


Q ss_pred             ccCCceeecCCCcEEEEeCCEEEEEeCCeEEEEEccCCCceeEEE-eeCCcccccccCCe-EEEeccceEEEeeccC-hh
Q 003405          228 LQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTI-VLQNVRHLIPSSNA-VVVALENSIFGLFPVP-LG  304 (823)
Q Consensus       228 ~~~~~i~w~~~P~~v~~~~PYll~~~~~~ieV~~l~~~~~lvQ~i-~l~~~~~l~~~~~~-v~v~s~~~I~~l~~~~-~~  304 (823)
                      ..++++.|+..|.++++..||++|+.++.+|||+.. ++.++|+| +++.++.+++++++ +|+++-+.+|++.|+| +.
T Consensus       233 ~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~-~~qlvQSI~~~~~~~~l~s~~~~i~~~~~~s~v~~L~p~~~~~  311 (877)
T KOG2063|consen  233 AQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKL-DGQLVQSITPLSNGRSLLSAHNGIIFVASLSNVWILVPVSNFE  311 (877)
T ss_pred             cCCCceEecccchhhcccCceEEEEccccEEEEecc-CHHHhhccccccccceeeecCCcEEEEEeccceEEEEeccchH
Confidence            668999999999999999999999999999999997 68999999 99998888766555 5555669999999999 99


Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHH-HHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCCCCCC
Q 003405          305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRF-AHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPK  383 (823)
Q Consensus       305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~-a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l~~~~  383 (823)
                      .||++|++.++|++|++|++..... .+.+...+..++.++ |+.+|.+++|++||.+|.++.+||+.||+|||++++..
T Consensus       312 ~qi~~lL~~k~fe~ai~L~e~~~~~-~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~  390 (877)
T KOG2063|consen  312 KQIQDLLQEKSFEEAISLAEILDSP-NPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSE  390 (877)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCc
Confidence            9999999999999999999987422 222223455667777 89999999999999999999999999999999997443


Q ss_pred             CcCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 003405          384 TTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEG  463 (823)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~le~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~  463 (823)
                      ....    .+...+   |               .+.+.+...+        ..  .|.-+++.||++.|++..++.+...
T Consensus       391 ~~~~----~~~~~v---p---------------~~~~~~~~~~--------~v--~a~l~~~~ylt~~r~~~~~~l~~~~  438 (877)
T KOG2063|consen  391 NSSI----EFTGVV---P---------------IRAPELRGGD--------LV--PAVLALIVYLTQSRREENKKLNKYK  438 (877)
T ss_pred             cccc----ceeeec---c---------------CchhhhccCc--------cc--chhhhhhhHhHHHHHHHHHHHHHhh
Confidence            3110    110000   0               0000111111        11  3555899999988887655433211


Q ss_pred             chhHhhhcccCCCcCCCccccccCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcCChhhHHhhhcCCC-cccHHHHHHH
Q 003405          464 TEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLN-YCDVKICEEI  542 (823)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n-~c~~~~~~~~  542 (823)
                      -.     .. ..+..           ...+....+....++++|||+|||||+++++. ...++++.+| +|++++++.+
T Consensus       439 m~-----~~-~~~~~-----------~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~~-~v~~llrlen~~c~vee~e~~  500 (877)
T KOG2063|consen  439 ML-----YM-NYFKN-----------TLISELLKSDLNDILELIDTTLLKCYLETNPG-LVGPLLRLENNHCDVEEIETV  500 (877)
T ss_pred             hh-----HH-hhhhc-----------cCcchhhccchHHHHHHHHHHHHHHHHhcCch-hhhhhhhccCCCcchHHHHHH
Confidence            00     00 00000           01112223346678999999999999999864 6678888876 9999999999


Q ss_pred             HHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhccc-CCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCc
Q 003405          543 LQKKNHYTALLELYKSNARHREALKLLHELVEESK-SNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCP  621 (823)
Q Consensus       543 L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~-~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p  621 (823)
                      |+++++|.+|+.||+.+|+|++||++|++++++.. .|     .....+++.+++||++++.++.+|||+|+.|+++.+|
T Consensus       501 L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d-----~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p  575 (877)
T KOG2063|consen  501 LKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTD-----SFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP  575 (877)
T ss_pred             HHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccc-----cchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc
Confidence            99999999999999999999999999999998763 32     2234567889999999999999999999999999999


Q ss_pred             ccccccccc------CCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 003405          622 TQTIELFLS------GNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWD  695 (823)
Q Consensus       622 ~~~~~if~~------~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~  695 (823)
                      +.|++||++      +++++++|+.||.+..|.+++.|||+++.++ ...+..+||.|+.+|++.+.+. ..  .+++. 
T Consensus       576 ~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e~v~~~-~~--~~~kg-  650 (877)
T KOG2063|consen  576 EAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLEKVLEQ-AS--TDGKG-  650 (877)
T ss_pred             hhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc-cccchHHHHHHHHHHHHHHhhc-cC--chhcc-
Confidence            999999999      3699999999999999999999999999875 4568899999999999998741 11  01111 


Q ss_pred             cccchH--HHHHHHHHhhhcCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHHhCCCch-------------
Q 003405          696 EKAYSP--TRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVFLINQ-------------  760 (823)
Q Consensus       696 ~~~~~~--~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~L~D~~~-------------  760 (823)
                       ++..+  .|+||+.||+.|+.|+++.+|..++.+.|++|+++++||||+|++||+||++.|+|++.             
T Consensus       651 -~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~  729 (877)
T KOG2063|consen  651 -EEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDK  729 (877)
T ss_pred             -ccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCC
Confidence             12222  59999999999999999999999999999999999999999999999999999998844             


Q ss_pred             ---hHHHHHHHHhcCC
Q 003405          761 ---PVFLLIRRMAMDI  773 (823)
Q Consensus       761 ---a~~~~l~~~y~~~  773 (823)
                         .+|..||++|++.
T Consensus       730 ~~~~~y~~lL~~~l~~  745 (877)
T KOG2063|consen  730 TNKEIYLTLLRIYLNP  745 (877)
T ss_pred             cccHHHHHHHHHHhcc
Confidence               4777888888885

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query823
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 85/564 (15%), Positives = 170/564 (30%), Gaps = 172/564 (30%)

Query: 342 HIRFAHYLFDTG----SYEEAMEHFLASQV---DITYALSLYPSIVLPKTTV-----VPE 389
           H    H  F+TG     Y++ +  F  + V   D        P  +L K  +       +
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKD 59

Query: 390 PE----RLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALI 445
                 RL         LS+    +   +E         L  N         +  LM+ I
Sbjct: 60  AVSGTLRLFWTL-----LSKQEEMVQKFVEEV-------LRIN---------YKFLMSPI 98

Query: 446 KFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAA 505
           K  Q++ S +         +   L      F  ++ +R +   K                
Sbjct: 99  KTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLK---------------- 139

Query: 506 ILDTALLQA-----LLL-----TGQSSAALELLK----------GLNYCDVKIC---EEI 542
            L  ALL+      +L+     +G++  AL++             + + ++K C   E +
Sbjct: 140 -LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 543 LQK-KNHYTALLELYKSNARHREALKLLHELVEESKSN--QSQD--------------EH 585
           L+  +     +   + S + H   +KL    ++       +S+               + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 586 TQKFNPE----------SIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNI 633
              FN             + ++L     T   L      L     P +   L L      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCR 314

Query: 634 PADLVNSYLKQYSP---SMQGRYLELMLAMNEN--SISGNLQNEMVQIYLSEVLD----- 683
           P DL    +   +P   S+    +   LA  +N   ++ +    +++  L  VL+     
Sbjct: 315 PQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYR 372

Query: 684 -WYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMN 742
             +  LS                       I    P +LL  +  D +  +  +++ K++
Sbjct: 373 KMFDRLSVFPP-SAH---------------I----PTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 743 QHELA------LSLYVHKVFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQA-TII 795
           ++ L        ++ +  ++L              ++K  +      H    ++    I 
Sbjct: 413 KYSLVEKQPKESTISIPSIYL--------------ELKVKLENEYALHR--SIVDHYNIP 456

Query: 796 KLFFSSLLRLMPSRSYIWKGFFVG 819
           K F S  L       Y +    +G
Sbjct: 457 KTFDSDDLIPPYLDQYFY--SHIG 478
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query823
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.97
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 98.63
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.63
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 98.57
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 98.5
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.45
3ow8_A321 WD repeat-containing protein 61; structural genomi 98.45
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.43
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.42
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 98.39
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 98.39
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 98.34
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 98.33
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 98.31
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 98.3
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 98.3
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.29
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.28
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.27
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 98.26
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.25
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 98.23
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 98.22
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 98.22
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 98.21
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 98.21
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.2
3jrp_A379 Fusion protein of protein transport protein SEC13 98.19
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 98.17
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.16
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 98.15
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 98.13
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 98.13
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 98.13
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 98.12
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 98.09
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 98.07
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 98.05
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 98.03
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 98.01
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 98.01
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.99
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.99
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.97
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.97
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.97
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.96
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.93
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.92
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.92
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.92
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.9
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.9
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.9
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.89
4e54_B435 DNA damage-binding protein 2; beta barrel, double 97.87
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.86
3jro_A753 Fusion protein of protein transport protein SEC13 97.84
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.82
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.82
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.82
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.82
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.82
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.82
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 97.81
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.81
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 97.81
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.8
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.8
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 97.79
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 97.78
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.78
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.77
2ymu_A577 WD-40 repeat protein; unknown function, two domain 97.76
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.75
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 97.72
2ymu_A577 WD-40 repeat protein; unknown function, two domain 97.71
3jrp_A379 Fusion protein of protein transport protein SEC13 97.69
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.69
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.68
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.67
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.64
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 97.63
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.61
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.6
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.6
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 97.59
2xyi_A430 Probable histone-binding protein CAF1; transcripti 97.58
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.58
3lvg_A624 Clathrin heavy chain 1; SELF assembly, coated PIT, 97.55
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.54
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.53
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.53
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.5
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.5
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 97.48
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.47
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 97.47
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.45
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.43
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 97.42
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.41
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.35
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 97.34
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.33
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 97.33
3jro_A753 Fusion protein of protein transport protein SEC13 97.31
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.27
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.27
2pm7_B297 Protein transport protein SEC13, protein transport 97.26
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 97.25
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.2
2xyi_A430 Probable histone-binding protein CAF1; transcripti 97.19
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.17
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.11
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.96
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 96.96
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 96.95
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 96.95
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 96.94
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 96.93
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.9
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.89
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 96.88
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.85
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 96.84
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 96.78
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 96.78
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 96.71
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 96.61
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.6
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 96.56
4e54_B435 DNA damage-binding protein 2; beta barrel, double 96.53
2pm7_B297 Protein transport protein SEC13, protein transport 96.5
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.31
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 96.3
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.3
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 96.22
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 96.13
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 96.08
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 96.06
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 95.68
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 95.68
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 95.65
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 95.6
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 95.57
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 95.5
3v9f_A781 Two-component system sensor histidine kinase/RESP 95.47
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 95.46
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 95.41
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.35
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 95.29
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.24
4a2l_A795 BT_4663, two-component system sensor histidine kin 95.24
4a2l_A795 BT_4663, two-component system sensor histidine kin 95.11
3ott_A758 Two-component system sensor histidine kinase; beta 95.07
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 94.97
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 94.87
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 94.86
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 94.85
3v9f_A781 Two-component system sensor histidine kinase/RESP 94.77
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 94.33
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.16
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 94.05
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 93.98
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 93.98
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 93.94
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 93.83
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 93.71
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 93.54
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 93.13
4eqf_A365 PEX5-related protein; accessory protein, tetratric 93.01
3ott_A758 Two-component system sensor histidine kinase; beta 92.87
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 92.74
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 92.47
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 92.47
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 92.47
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 92.45
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 92.4
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 92.28
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 92.23
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 92.22
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 92.07
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 91.95
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 91.82
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 91.65
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 91.6
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 91.29
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 91.18
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 90.45
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 90.19
1k32_A1045 Tricorn protease; protein degradation, substrate g 90.01
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 89.81
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 89.75
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.44
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 89.4
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 88.5
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 88.44
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 88.26
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 88.25
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 88.22
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 87.92
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 87.85
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 87.73
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 87.3
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 87.23
1k32_A1045 Tricorn protease; protein degradation, substrate g 87.1
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 87.08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 86.98
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 86.66
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 86.47
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 86.26
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 86.23
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 86.22
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 86.09
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 85.9
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 85.51
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.16
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 84.83
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 84.45
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 84.44
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 82.78
2gw1_A514 Mitochondrial precursor proteins import receptor; 82.54
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 82.39
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 81.76
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 81.32
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 81.08
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 80.55
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 80.35
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 80.02
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
Probab=98.97  E-value=3.1e-08  Score=121.28  Aligned_cols=327  Identities=17%  Similarity=0.209  Sum_probs=222.2

Q ss_pred             hhHHHHHHHhcCCHHHHHHHhhhCCCcchH---h-------hh-------hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405          303 LGAQIVQLTASGDFEEALALCKLLPPEDAS---L-------RA-------AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS  365 (823)
Q Consensus       303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~---~-------~~-------~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~  365 (823)
                      ..+-...+++.|+|+||+.+.+.....+..   +       ++       -....++.++|..+...|+|++|++.|.++
T Consensus      1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1052 APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            333345568899999999999886421110   0       00       012356778899999999999999999886


Q ss_pred             CCCHHHHHHhCCCCCCCCCcCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHH
Q 003405          366 QVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALI  445 (823)
Q Consensus       366 ~~dP~~vi~Lfp~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~le~~~~~~~a~~~L~  445 (823)
                      + ||..+..+      +.        .                                      .+  ++  .....++
T Consensus      1132 d-D~say~eV------a~--------~--------------------------------------~~--~l--GkyEEAI 1154 (1630)
T 1xi4_A         1132 D-DPSSYMEV------VQ--------A--------------------------------------AN--TS--GNWEELV 1154 (1630)
T ss_pred             C-ChHHHHHH------HH--------H--------------------------------------HH--Hc--CCHHHHH
Confidence            3 33332221      00        0                                      00  00  1245677


Q ss_pred             HHHHHHHHHHHHhhccCCchhHhhhcccCCCcCCCccccccCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcCChhhHH
Q 003405          446 KFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAAL  525 (823)
Q Consensus       446 ~yL~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~  525 (823)
                      .||..-|...  +                                             ...|||.|..||.++++.+.+.
T Consensus      1155 eyL~mArk~~--~---------------------------------------------e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A         1155 KYLQMARKKA--R---------------------------------------------ESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred             HHHHHHHhhc--c---------------------------------------------cccccHHHHHHHHhhcCHHHHH
Confidence            7886554431  0                                             0147889999999998877888


Q ss_pred             hhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCC
Q 003405          526 ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTD  605 (823)
Q Consensus       526 ~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~  605 (823)
                      .++..+|..+...+-+.|.+.|+|.+...+|...+.|.++..++.++++                .+.+++.-++-.  +
T Consensus      1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge----------------~q~AIEaarKA~--n 1249 (1630)
T 1xi4_A         1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE----------------YQAAVDGARKAN--S 1249 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCC----------------HHHHHHHHHHhC--C
Confidence            9998888888888889999999999999999999999999998888742                245565554322  2


Q ss_pred             hhhHHHhhhhh-----hhcCccccccccccCCCChH---HHHHHHhhc-CchhHHHHHHHHhhcccCCCChhHHHHHHHH
Q 003405          606 PMLVLEFSMLV-----LESCPTQTIELFLSGNIPAD---LVNSYLKQY-SPSMQGRYLELMLAMNENSISGNLQNEMVQI  676 (823)
Q Consensus       606 ~~li~~y~~wl-----l~~~p~~~~~if~~~~l~~~---~Vl~~L~~~-~~~~~~~YLE~li~~~~~~~~~~~h~~L~~l  676 (823)
                      .+...+.+--.     ++.....++.|-    ..++   .++.+.+.. .-+.++.+||.-+..+  .....+.++|+.+
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiL 1323 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAIL 1323 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHH
Confidence            22111111111     111111122211    1232   444555543 2456888999977532  3567899999999


Q ss_pred             HHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhh-cCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHHh
Q 003405          677 YLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKV  755 (823)
Q Consensus       677 Yl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~L  755 (823)
                      |+.+                     .+.|++..++- .+.-+..++++.|....++.|.++||.+-|+++.|+..++...
T Consensus      1324 yaKy---------------------~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A         1324 YSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred             HHhC---------------------CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence            9987                     36888888887 6788999999999999999999999999999999998888654


Q ss_pred             --------------CCCchhHHHHHHHHhcCCCCCcc
Q 003405          756 --------------FLINQPVFLLIRRMAMDIKPLVT  778 (823)
Q Consensus       756 --------------~D~~~a~~~~l~~~y~~~~~~~~  778 (823)
                                    +.-++.+|+-...+|++.+|..-
T Consensus      1383 ~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~l 1419 (1630)
T 1xi4_A         1383 TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 1419 (1630)
T ss_pred             HhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHH
Confidence                          33378899999999998765443
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 823
d1b89a_336 a.118.1.3 (A:) Clathrin heavy chain proximal leg s 3e-05
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 47/235 (20%)

Query: 526 ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 585
           E + G N   ++   +    +  Y A   LY + +        L  L             
Sbjct: 7   EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG------------ 54

Query: 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIP-ADLVNSYLKQ 644
                 ++ ++  +           E     ++    +  ++     +  AD +   +  
Sbjct: 55  ----EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 108

Query: 645 YSPSMQGRYLELML----AMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYS 700
           Y    +G + EL+     A+        +  E+  +Y                     + 
Sbjct: 109 YQD--RGYFEELITMLEAALGLERAHMGMFTELAILYSK-------------------FK 147

Query: 701 PTRKKLLSALESISG-YNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHK 754
           P  +K+   LE      N   +L+      L+ E   L  K  +++ A+   ++ 
Sbjct: 148 P--QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 200

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query823
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 99.68
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 99.05
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.39
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.32
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.3
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.28
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 98.13
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 98.08
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.05
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.9
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.82
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.8
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 97.71
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 97.62
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.52
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.52
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.5
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.35
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.34
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 97.29
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.28
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.25
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.2
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.14
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.93
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 96.83
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 96.76
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 96.36
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 95.97
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 95.93
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 95.8
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 95.19
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 94.81
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 94.63
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 94.53
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 93.59
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 93.17
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 92.24
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 91.34
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 89.03
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 87.76
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 85.64
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 84.3
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 84.09
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 81.2
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 80.52
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 80.05
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=9.1e-17  Score=170.69  Aligned_cols=215  Identities=15%  Similarity=0.130  Sum_probs=162.1

Q ss_pred             hHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCC
Q 003405          523 AALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLC  602 (823)
Q Consensus       523 ~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~  602 (823)
                      .+..|++.+|+||+.++.+.|.+.|.|++++.+|..-+++++|+.+|.++.                ..+.+++++++..
T Consensus         4 ~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~----------------~~~~avd~~~k~~   67 (336)
T d1b89a_           4 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG----------------EYQAAVDGARKAN   67 (336)
T ss_dssp             HHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTT----------------CHHHHHHHHHHHT
T ss_pred             hHHHHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhc----------------cHHHHHHHHHHcC
Confidence            456899999999999999999999999999999999999999999998753                2356888888654


Q ss_pred             CCChhhHHHhhhhhhhcCcccccccccc-CCCChHHHHHHH---hh-cCchhHHHHHHHHhhcccCCCChhHHHHHHHHH
Q 003405          603 GTDPMLVLEFSMLVLESCPTQTIELFLS-GNIPADLVNSYL---KQ-YSPSMQGRYLELMLAMNENSISGNLQNEMVQIY  677 (823)
Q Consensus       603 ~~~~~li~~y~~wll~~~p~~~~~if~~-~~l~~~~Vl~~L---~~-~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lY  677 (823)
                        ..+++.+...++++.++.....+-.. ..+.++.+.+.+   +. .....++.|||..+..  ...+..+||+|+.+|
T Consensus        68 --~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~ly  143 (336)
T d1b89a_          68 --STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY  143 (336)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHH
Confidence              66788899999999888766555332 235555443332   22 3467899999998753  346789999999999


Q ss_pred             HHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhh-cCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHHhC
Q 003405          678 LSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVF  756 (823)
Q Consensus       678 l~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~L~  756 (823)
                      +.+                     .+.|++.||+. |+.||++++++.|....+++|.++||+|+|+|++|+.+++....
T Consensus       144 ak~---------------------~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~  202 (336)
T d1b89a_         144 SKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  202 (336)
T ss_dssp             HTT---------------------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HHh---------------------ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcch
Confidence            976                     47999999998 89999999999999999999999999999999999999999876


Q ss_pred             CC--------------chhHHHHHHHHhcCCCCCcc
Q 003405          757 LI--------------NQPVFLLIRRMAMDIKPLVT  778 (823)
Q Consensus       757 D~--------------~~a~~~~l~~~y~~~~~~~~  778 (823)
                      |.              ++.+|+.++..|++.+|...
T Consensus       203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i  238 (336)
T d1b89a_         203 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL  238 (336)
T ss_dssp             TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGH
T ss_pred             hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHH
Confidence            64              67899999999998665544
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure