Citrus Sinensis ID: 003418


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-
MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
ccEEcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccc
cEEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEHHHHHHHHcccccccccccccHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHcccccEEcccEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccc
mfvtsvlppggedlrgdeVDKIVQFKKalgiddpdaaAMHVEIGRRLFRQRLevgdrdgdmEQRWAFQKLIYVSTLVFgeassfllpwkrvfKVTDSQVEIAIRDNAKRLYASKLKsvgrdvdaEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISlrqhpnadrfargvgpvslvggefdgdrkmdDLKLLYRAYVTdslsggrmeESKLAALNQLRNIFglgkreseAIIVDVTSKVYRKRLgqavsggaleaADSKASFLQSLCEElhfdpqkasEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCvpqqtveaahSDICGSLFEKVVKDAISsgvegydgEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADikgessdtseeepikeeekqtdedEEEWESLETLkkitpskelaekmgkpgqteinlkddlperdrtdlyKTYLLYCLtgevtkipfgasittkkddseYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEifssgtgefdaeevyekipadlsinAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLlacdkavpaeplswelpDELADLFNIYmksnpapekLTRLQYLLGISDSTAAALREMGDSLLsagaeeenfvf
mfvtsvlppggedlrgdeVDKIVQFKKalgiddpdaAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASklksvgrdvdaehIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTAlsilksrtrVVKGVAQVVEELDKVLAFNNLLISLRqhpnadrfargVGPVSLVGGEFDGDRKMDDLKLLYRAYVTdslsggrmEESKLAALNQLRNIfglgkreseaiIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSgvegydgevKKAVRKAahglrltreAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELkklitfntlVVTELVAdikgessdtseeepikeeekqtdedeeewesletlkkitpskelaekmgkpgqteinlkddlperdrTDLYKTYLLYCLtgevtkipfgasittkkddsEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEvqkqvglpseYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSsgtgefdaeeVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLlsagaeeenfvf
MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKraraaenrteaakeLKKLITFNTLVVTELVADIKGESsdtseeepikeeekqtdedeeewesletlkkITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
******************VDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG****SKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************************************************TDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISD*************************
MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQR*************WAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLK**G*DVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALS************AQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVA********VAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIY************************TLVVTELVA******************************************************EINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFG**********EYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKM************L**KQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKN**GVVSSLNDLLACDKAVPA***********ADLFNI*****************LGISDS*A*******************FVF
MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************LETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGES****************DEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAA********************
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MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPxxxxxxxxxxxxxxxxxxxxxKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query821 2.2.26 [Sep-21-2011]
Q8LPR91016 Protein TIC110, chloropla yes no 0.996 0.805 0.753 0.0
O24303996 Protein TIC110, chloropla N/A no 0.997 0.822 0.735 0.0
>sp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1 Back     alignment and function desciption
 Score = 1268 bits (3280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/823 (75%), Positives = 730/823 (88%), Gaps = 5/823 (0%)

Query: 2    FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
            +VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD 
Sbjct: 196  YVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDA 255

Query: 62   EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
            EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD
Sbjct: 256  EQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRD 315

Query: 122  VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
            ++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VV
Sbjct: 316  INVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVV 375

Query: 182  EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
            EEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+L
Sbjct: 376  EELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDAL 435

Query: 242  SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
            SGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA 
Sbjct: 436  SGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAK 495

Query: 302  FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
            +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+
Sbjct: 496  YLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVD 555

Query: 362  AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
             AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F
Sbjct: 556  TAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVF 615

Query: 422  VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTS-EEEPIKEEEKQTD 480
              YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIKGESSD + EE+P+  +EK+ D
Sbjct: 616  TNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIKGESSDKAPEEDPV--QEKEED 673

Query: 481  EDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEV 540
            +++EEW SLE+L+K  P KELAEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEV
Sbjct: 674  DEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEV 733

Query: 541  TKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQL 600
            T+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQL
Sbjct: 734  TRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQL 793

Query: 601  TKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 660
            TKAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V
Sbjct: 794  TKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANV 853

Query: 661  DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARN 720
             LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++
Sbjct: 854  SLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQS 913

Query: 721  RLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSN- 779
            RLSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+ 
Sbjct: 914  RLSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDP 973

Query: 780  -PAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
             PAPEK+ RLQYLLGI DSTA ALREM D  LS+ AEE NFVF
Sbjct: 974  KPAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEGNFVF 1016




Involved in protein precursor import into chloroplasts. Forms a voltage-dependent cation-selective channel at the inner envelope of chloroplasts, which specifically responds to a transit peptide. Associates with both the precursor and mature forms of the preprotein.
Arabidopsis thaliana (taxid: 3702)
>sp|O24303|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query821
356553146 996 PREDICTED: uncharacterized protein LOC10 0.996 0.821 0.807 0.0
356500924 995 PREDICTED: uncharacterized protein LOC10 0.996 0.822 0.807 0.0
359478503 1007 PREDICTED: protein TIC110, chloroplastic 0.996 0.812 0.822 0.0
449454979 1014 PREDICTED: protein TIC110, chloroplastic 0.997 0.807 0.806 0.0
147789732 1061 hypothetical protein VITISV_038562 [Viti 0.996 0.770 0.768 0.0
224124724 1011 predicted protein [Populus trichocarpa] 0.998 0.811 0.795 0.0
224146640 1013 predicted protein [Populus trichocarpa] 0.998 0.809 0.789 0.0
255553373 1019 conserved hypothetical protein [Ricinus 0.998 0.804 0.802 0.0
357491373 993 Chloroplast inner envelope protein (IEP1 0.997 0.824 0.779 0.0
1495768 996 chloroplast inner envelope protein, 110 0.997 0.822 0.758 0.0
>gi|356553146|ref|XP_003544919.1| PREDICTED: uncharacterized protein LOC100810630 [Glycine max] Back     alignment and taxonomy information
 Score = 1386 bits (3588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/820 (80%), Positives = 758/820 (92%), Gaps = 2/820 (0%)

Query: 2   FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
           FV+SVLPPGGE+L+GDEVD+IV FK +LGIDDPDAA+MH+EIGR++FRQRLEVGDRD D+
Sbjct: 179 FVSSVLPPGGEELKGDEVDRIVSFKNSLGIDDPDAASMHMEIGRKIFRQRLEVGDRDADV 238

Query: 62  EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
           EQR AFQKLIYVS LVFG+ASSFLLPWKRVFKVTDSQ+E+A+RDNA+RL+ASKLKSVGRD
Sbjct: 239 EQRRAFQKLIYVSNLVFGDASSFLLPWKRVFKVTDSQIEVAVRDNAQRLFASKLKSVGRD 298

Query: 122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
           +DAE +V LR+EQ   RLSD LAE+LFR HTRKLVEENI  A+ ILKSRT+ V GV+Q V
Sbjct: 299 IDAEQLVALRKEQQLCRLSDELAENLFRTHTRKLVEENISVAIGILKSRTKAVPGVSQAV 358

Query: 182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
            ELD+VLAFNNLLIS + HP+ DRFARGVGPVSLVGGE+DGDRK++DLKLLYRAYV+D+L
Sbjct: 359 AELDRVLAFNNLLISFKTHPDVDRFARGVGPVSLVGGEYDGDRKIEDLKLLYRAYVSDAL 418

Query: 242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
           SGGRME+ KLAALNQLRNIFGLGKRE+EAI +DVTSKVYRKRL QAV+ G LE ADSKA+
Sbjct: 419 SGGRMEDDKLAALNQLRNIFGLGKREAEAISLDVTSKVYRKRLAQAVADGELEMADSKAA 478

Query: 302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
           FLQ+LC+ELHFDPQKASE+HEEIYRQKLQ+CVADGELN+EDVAALLRLRVMLC+PQQ VE
Sbjct: 479 FLQNLCDELHFDPQKASELHEEIYRQKLQKCVADGELNEEDVAALLRLRVMLCIPQQIVE 538

Query: 362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
            AHSDICGSLFEKVVK+AI+SGV+GYD E++K+VRKAAHGLRLTRE A+SIASKAVR+IF
Sbjct: 539 TAHSDICGSLFEKVVKEAIASGVDGYDAEIQKSVRKAAHGLRLTREVAISIASKAVRKIF 598

Query: 422 VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDE 481
           + YIKRARAA NRTE+AKELKK+I FNTLVVT LV DIKGES+D S EEP+KE+  QT  
Sbjct: 599 INYIKRARAAGNRTESAKELKKMIAFNTLVVTNLVEDIKGESADISTEEPVKEDITQT-- 656

Query: 482 DEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVT 541
           D+EEWESL+TLKKI P+KEL EK+GKPGQTEI LKDDLPERDRTDLYKTYLLYCLTGEVT
Sbjct: 657 DDEEWESLQTLKKIRPNKELTEKLGKPGQTEITLKDDLPERDRTDLYKTYLLYCLTGEVT 716

Query: 542 KIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 601
           ++PFGA ITTKKDDSEY+LL+QLGGILGL+++EIV+VHRGLAEQAFRQQAEVILADGQLT
Sbjct: 717 RVPFGAQITTKKDDSEYLLLNQLGGILGLSSQEIVEVHRGLAEQAFRQQAEVILADGQLT 776

Query: 602 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVD 661
           KAR+EQLN +QKQVGLP EYAQKIIK+ITTTKMAAAIETAV QG+LN+KQIRELKEA+VD
Sbjct: 777 KARVEQLNNLQKQVGLPQEYAQKIIKSITTTKMAAAIETAVTQGRLNMKQIRELKEANVD 836

Query: 662 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNR 721
           LD+M+SE+LRE LFKKTVD+IFSSGTGEFD EEVYEKIP+DL+IN EKAR VVHELA++R
Sbjct: 837 LDSMVSENLRETLFKKTVDDIFSSGTGEFDNEEVYEKIPSDLNINKEKARGVVHELAKSR 896

Query: 722 LSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPA 781
           LSNSL+QAVSLLRQ+N +GVVSSLNDLLACDKAVP++P+SWE+P+ELADL+ IY+KS+P 
Sbjct: 897 LSNSLVQAVSLLRQRNHKGVVSSLNDLLACDKAVPSQPVSWEVPEELADLYTIYLKSDPT 956

Query: 782 PEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
           PE L+RLQYLLGI+DSTAAALREMGD LL+  AEEE FVF
Sbjct: 957 PENLSRLQYLLGINDSTAAALREMGDRLLNTTAEEEKFVF 996




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500924|ref|XP_003519280.1| PREDICTED: uncharacterized protein LOC100810328 [Glycine max] Back     alignment and taxonomy information
>gi|359478503|ref|XP_002276796.2| PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera] gi|297745792|emb|CBI15848.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454979|ref|XP_004145231.1| PREDICTED: protein TIC110, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147789732|emb|CAN60839.1| hypothetical protein VITISV_038562 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124724|ref|XP_002319406.1| predicted protein [Populus trichocarpa] gi|222857782|gb|EEE95329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146640|ref|XP_002326080.1| predicted protein [Populus trichocarpa] gi|222862955|gb|EEF00462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255553373|ref|XP_002517728.1| conserved hypothetical protein [Ricinus communis] gi|223543126|gb|EEF44660.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357491373|ref|XP_003615974.1| Chloroplast inner envelope protein (IEP110) [Medicago truncatula] gi|355517309|gb|AES98932.1| Chloroplast inner envelope protein (IEP110) [Medicago truncatula] Back     alignment and taxonomy information
>gi|1495768|emb|CAA92823.1| chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query821
TAIR|locus:20074371016 TIC110 "translocon at the inne 0.997 0.806 0.720 4.6e-311
TAIR|locus:2007437 TIC110 "translocon at the inner envelope membrane of chloroplasts 110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2984 (1055.5 bits), Expect = 4.6e-311, P = 4.6e-311
 Identities = 592/822 (72%), Positives = 690/822 (83%)

Query:     2 FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
             +VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD 
Sbjct:   196 YVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDA 255

Query:    62 EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
             EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD
Sbjct:   256 EQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRD 315

Query:   122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
             ++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VV
Sbjct:   316 INVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVV 375

Query:   182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
             EEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+L
Sbjct:   376 EELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDAL 435

Query:   242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
             SGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA 
Sbjct:   436 SGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAK 495

Query:   302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
             +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+
Sbjct:   496 YLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVD 555

Query:   362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
              AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F
Sbjct:   556 TAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVF 615

Query:   422 VIYIKXXXXXXXXXXXXXXLKKLITFNTLVVTELVADIKGESXXXXXXXXXXXXXXXXXX 481
               YI+              LKK+I FNTLVVTE+VADIKGES                  
Sbjct:   616 TNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIKGESSDKAPEEDPVQEKEEDDE 675

Query:   482 XXXXXXXXXXXXXITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVT 541
                            P KELAEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEVT
Sbjct:   676 DEEWGSLESLRKT-RPDKELAEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEVT 734

Query:   542 KIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 601
             +IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQLT
Sbjct:   735 RIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQLT 794

Query:   602 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVD 661
             KAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V 
Sbjct:   795 KARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANVS 854

Query:   662 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNR 721
             LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++R
Sbjct:   855 LDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQSR 914

Query:   722 LSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNP- 780
             LSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+P 
Sbjct:   915 LSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDPK 974

Query:   781 -APEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
              APEK+ RLQYLLGI DSTA ALREM D  LS+ AEE NFVF
Sbjct:   975 PAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEGNFVF 1016


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      821       776   0.00093  121 3  11 22  0.41    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  308 KB (2159 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  71.98u 0.13s 72.11t   Elapsed:  00:00:03
  Total cpu time:  71.98u 0.13s 72.11t   Elapsed:  00:00:03
  Start:  Tue May 21 05:16:46 2013   End:  Tue May 21 05:16:49 2013


GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0031897 "Tic complex" evidence=TAS
GO:0045037 "protein import into chloroplast stroma" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LPR9TI110_ARATHNo assigned EC number0.75330.99630.8051yesno
O24303TI110_PEANo assigned EC number0.73560.99750.8222N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 821
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 92.6
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 92.21
PF04391188 DUF533: Protein of unknown function (DUF533); Inte 90.15
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 89.74
cd07313104 terB_like_2 tellurium resistance terB-like protein 89.45
cd07313104 terB_like_2 tellurium resistance terB-like protein 89.19
cd07176111 terB tellurite resistance protein terB. This famil 88.16
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 85.68
PF0373573 ENT: ENT domain; InterPro: IPR005491 This entry re 83.07
cd07311150 terB_like_1 tellurium resistance terB-like protein 82.92
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 82.18
cd07311150 terB_like_1 tellurium resistance terB-like protein 80.05
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
Probab=92.60  E-value=0.32  Score=46.51  Aligned_cols=112  Identities=22%  Similarity=0.381  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhh
Q 003418          585 QAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD  663 (821)
Q Consensus       585 ~ayrqql~~~L~~G~Ld~a~a~~L~~Iq-~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~  663 (821)
                      .+++=.+.-+.+||.++.+....+..+. ...++|+.....++..+...+-         . ..+..+.      -..+.
T Consensus        25 a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~------~~~l~   88 (140)
T PF05099_consen   25 ALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQ---------E-PIDLEEL------LRELR   88 (140)
T ss_dssp             HHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHH---------H-CCHHHHH------HHHHC
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh---------c-cccHHHH------HHHHH
Confidence            3445566778889999999999998877 9999999988877654322211         1 1122222      11244


Q ss_pred             hhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHH
Q 003418          664 NMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR  712 (821)
Q Consensus       664 ~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~  712 (821)
                      ..++.+.|..+++..+.=+.++|..+-.+.+++.++...|||+.+.-..
T Consensus        89 ~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~  137 (140)
T PF05099_consen   89 DSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR  137 (140)
T ss_dssp             TS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence            4466899999999999999999999888889999999999999876544



Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.

>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins Back     alignment and domain information
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information
>cd07176 terB tellurite resistance protein terB Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin Back     alignment and domain information
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query821
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 66.0 bits (160), Expect = 4e-11
 Identities = 102/697 (14%), Positives = 185/697 (26%), Gaps = 236/697 (33%)

Query: 58  DGDM-EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLK 116
           D +  E ++ ++ ++ V          F   +   F   D      ++D  K + + +  
Sbjct: 8   DFETGEHQYQYKDILSV----------FEDAFVDNFDCKD------VQDMPKSILSKE-- 49

Query: 117 SVGRDVDAEHIVRLR-EEQLSYRLSDAL-----------AEDLFREH----TRKLVEENI 160
                 + +HI+  +     + RL   L            E++ R +       +  E  
Sbjct: 50  ------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 161 VTAL---SILKSRTRVVKGVAQV-----VEELDKVLAFNNLLISLRQHPNADRFARGVGP 212
             ++     ++ R R+     QV     V  L   L     L+ LR   N          
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKN---------- 152

Query: 213 VSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAA--LNQLR-------NIF-- 261
           V + G        +                 G   ++ +A       +        IF  
Sbjct: 153 VLIDG--------V----------------LG-SGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 262 GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 321
            L    S   ++++  K+  +              D       S  +       +   I 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQ-------------IDPN---WTSRSDHSSNIKLRIHSIQ 231

Query: 322 EEIYR----QKLQQC--VADGELNDEDVAAL-LRLRVMLCVPQQTVEAAHSDICGSLFEK 374
            E+ R    +  + C  V     N +   A  L  +++L     T     +D   +    
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTT 287

Query: 375 VVK-DAISSGVEGYDGEVKKAVRKAAHGLR---LTREA------AMSIASKAVR----RI 420
            +  D  S  +     EVK  + K     R   L RE        +SI ++++R      
Sbjct: 288 HISLDHHSMTLT--PDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 421 ----FVIYIKRARAAENRTEA--AKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKE 474
                V   K     E+        E +K+  F+ L V                   I  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFP-------------PSAHIPT 389

Query: 475 E-------EKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEI-NLKDDL--PERDR 524
                   +    +       L           L EK  K     I ++  +L     + 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLH-------KYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 525 TDL-------YKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVD 577
             L       Y     +              +     D  Y   S +G            
Sbjct: 443 YALHRSIVDHYNIPKTFDSDD----------LIPPYLDQ-YF-YSHIG------------ 478

Query: 578 VHRGLAEQA-----FRQ--------QAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQK 624
            H    E       FR         + ++   D     A    LN +Q Q+     Y   
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQ-QLKF---YKPY 533

Query: 625 IIKNITT-TKMAAAI-------ETAVAQGK-LNIKQI 652
           I  N     ++  AI       E  +   K  ++ +I
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query821
2h5n_A133 Hypothetical protein PG_1108; SAD, MCSG,PSI, struc 93.38
2h5n_A133 Hypothetical protein PG_1108; SAD, MCSG,PSI, struc 93.18
2ou3_A161 Tellurite resistance protein of COG3793; structura 92.88
2ou3_A161 Tellurite resistance protein of COG3793; structura 91.78
2jxu_A153 TERB, KP-TERB; tellurite resistance protein, plasm 91.31
1uz3_A102 EMSY protein; chromatin regulator, chromatin regul 84.04
2jxu_A153 TERB, KP-TERB; tellurite resistance protein, plasm 82.4
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2 Back     alignment and structure
Probab=93.38  E-value=0.73  Score=43.39  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhh
Q 003418          586 AFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM  665 (821)
Q Consensus       586 ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~  665 (821)
                      ++.=.+..+.+||.+++++.+.+..+..++|++++.+..++....               .....+...+       ...
T Consensus        21 ~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~-------~~~   78 (133)
T 2h5n_A           21 IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL-------IAR   78 (133)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-------HHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------hccHHHHHHH-------HHc
Confidence            666678889999999999999999999999999999888888653               1122222211       133


Q ss_pred             ccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHH
Q 003418          666 ISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA  710 (821)
Q Consensus       666 i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekA  710 (821)
                      ++.+.|..+.+--+.=+.++|...-.+..+++++..-||++....
T Consensus        79 ~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~  123 (133)
T 2h5n_A           79 MDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV  123 (133)
T ss_dssp             SCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            568888888888888888888886666799999999999987655



>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2 Back     alignment and structure
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1 Back     alignment and structure
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1 Back     alignment and structure
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044} Back     alignment and structure
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Back     alignment and structure
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query821
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 93.74
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 93.65
d1uz3a190 Emsy {Human (Homo sapiens) [TaxId: 9606]} 89.23
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
class: All alpha proteins
fold: TerB-like
superfamily: TerB-like
family: COG3793-like
domain: Tellurite resistance protein of COG3793
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]
Probab=93.74  E-value=0.13  Score=47.06  Aligned_cols=111  Identities=8%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhh
Q 003418          585 QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDN  664 (821)
Q Consensus       585 ~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~  664 (821)
                      .+.+-.+..|-+||.++++++.++..+..+++.+++...++....               ......+.   .     ...
T Consensus        30 ~~~~~L~~vA~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~---~-----~~~   86 (160)
T d2ou3a1          30 IYMKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKTYE---------------ADEALEEV---I-----ARS   86 (160)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHCC---------------CCSCHHHH---H-----TTC
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccchHHHHHHhhc---------------cchhhHHH---H-----HHc
Confidence            345555667889999999999999999999999998876654321               11112111   1     112


Q ss_pred             hccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 003418          665 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA  718 (821)
Q Consensus       665 ~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~~  718 (821)
                      ..+.+.+..+++..+.=+.++|...-.+.+++.++...|||+.+....|.....
T Consensus        87 ~~~~~~~~~ll~~l~~va~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~~~  140 (160)
T d2ou3a1          87 PQVSMAQRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYY  140 (160)
T ss_dssp             TTGGGCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            256677889999999999999999888889999999999999999888765444



>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure