Citrus Sinensis ID: 003418

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-

MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF

ccEEcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccc

cEEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEHHHHHHHHcccccccccccccHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHcccccEEcccEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccc

mfvtsvlppggedlrgdeVDKIVQFKKalgiddpdaaAMHVEIGRRLFRQRLevgdrdgdmEQRWAFQKLIYVSTLVFgeassfllpwkrvfKVTDSQVEIAIRDNAKRLYASKLKsvgrdvdaEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISlrqhpnadrfargvgpvslvggefdgdrkmdDLKLLYRAYVTdslsggrmeESKLAALNQLRNIFglgkreseAIIVDVTSKVYRKRLgqavsggaleaADSKASFLQSLCEElhfdpqkasEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCvpqqtveaahSDICGSLFEKVVKDAISsgvegydgEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADikgessdtseeepikeeekqtdedEEEWESLETLkkitpskelaekmgkpgqteinlkddlperdrtdlyKTYLLYCLtgevtkipfgasittkkddseYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEifssgtgefdaeevyekipadlsinAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLlacdkavpaeplswelpDELADLFNIYmksnpapekLTRLQYLLGISDSTAAALREMGDSLLsagaeeenfvf

mfvtsvlppggedlrgdeVDKIVQFKKalgiddpdaAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASklksvgrdvdaehIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTAlsilksrtrVVKGVAQVVEELDKVLAFNNLLISLRqhpnadrfargVGPVSLVGGEFDGDRKMDDLKLLYRAYVTdslsggrmEESKLAALNQLRNIfglgkreseaiIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSgvegydgevKKAVRKAahglrltreAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELkklitfntlVVTELVAdikgessdtseeepikeeekqtdedeeewesletlkkitpskelaekmgkpgqteinlkddlperdrTDLYKTYLLYCLtgevtkipfgasittkkddsEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEvqkqvglpseYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSsgtgefdaeeVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLlsagaeeenfvf

MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKraraaenrteaakeLKKLITFNTLVVTELVADIKGESsdtseeepikeeekqtdedeeewesletlkkITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF

******************VDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG****SKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************************************************TDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISD*************************

MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQR*************WAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLK**G*DVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALS************AQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVA********VAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIY************************TLVVTELVA******************************************************EINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFG**********EYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKM************L**KQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKN**GVVSSLNDLLACDKAVPA***********ADLFNI*****************LGISDS*A*******************FVF

MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************LETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF

MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGES****************DEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAA********************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPxxxxxxxxxxxxxxxxxxxxxKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		821	2.2.26 [Sep-21-2011]
Q8LPR9		1016	Protein TIC110, chloropla	yes	no	0.996	0.805	0.753	0.0
O24303		996	Protein TIC110, chloropla	N/A	no	0.997	0.822	0.735	0.0

>sp\|Q8LPR9\|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1	Back alignment and function desciption

 Score = 1268 bits (3280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/823 (75%), Positives = 730/823 (88%), Gaps = 5/823 (0%)

Query: 2    FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
            +VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD 
Sbjct: 196  YVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDA 255

Query: 62   EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
            EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD
Sbjct: 256  EQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRD 315

Query: 122  VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
            ++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VV
Sbjct: 316  INVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVV 375

Query: 182  EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
            EEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+L
Sbjct: 376  EELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDAL 435

Query: 242  SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
            SGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA 
Sbjct: 436  SGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAK 495

Query: 302  FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
            +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+
Sbjct: 496  YLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVD 555

Query: 362  AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
             AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F
Sbjct: 556  TAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVF 615

Query: 422  VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTS-EEEPIKEEEKQTD 480
              YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIKGESSD + EE+P+  +EK+ D
Sbjct: 616  TNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIKGESSDKAPEEDPV--QEKEED 673

Query: 481  EDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEV 540
            +++EEW SLE+L+K  P KELAEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEV
Sbjct: 674  DEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEV 733

Query: 541  TKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQL 600
            T+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQL
Sbjct: 734  TRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQL 793

Query: 601  TKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 660
            TKAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V
Sbjct: 794  TKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANV 853

Query: 661  DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARN 720
             LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++
Sbjct: 854  SLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQS 913

Query: 721  RLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSN- 779
            RLSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+ 
Sbjct: 914  RLSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDP 973

Query: 780  -PAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
             PAPEK+ RLQYLLGI DSTA ALREM D  LS+ AEE NFVF
Sbjct: 974  KPAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEGNFVF 1016

Involved in protein precursor import into chloroplasts. Forms a voltage-dependent cation-selective channel at the inner envelope of chloroplasts, which specifically responds to a transit peptide. Associates with both the precursor and mature forms of the preprotein.
Arabidopsis thaliana (taxid: 3702)

>sp\|O24303\|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		821
356553146		996	PREDICTED: uncharacterized protein LOC10	0.996	0.821	0.807	0.0
356500924		995	PREDICTED: uncharacterized protein LOC10	0.996	0.822	0.807	0.0
359478503		1007	PREDICTED: protein TIC110, chloroplastic	0.996	0.812	0.822	0.0
449454979		1014	PREDICTED: protein TIC110, chloroplastic	0.997	0.807	0.806	0.0
147789732		1061	hypothetical protein VITISV_038562 [Viti	0.996	0.770	0.768	0.0
224124724		1011	predicted protein [Populus trichocarpa]	0.998	0.811	0.795	0.0
224146640		1013	predicted protein [Populus trichocarpa]	0.998	0.809	0.789	0.0
255553373		1019	conserved hypothetical protein [Ricinus	0.998	0.804	0.802	0.0
357491373		993	Chloroplast inner envelope protein (IEP1	0.997	0.824	0.779	0.0
1495768		996	chloroplast inner envelope protein, 110	0.997	0.822	0.758	0.0

>gi\|356553146\|ref\|XP_003544919.1\| PREDICTED: uncharacterized protein LOC100810630 [Glycine max]	Back alignment and taxonomy information

 Score = 1386 bits (3588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/820 (80%), Positives = 758/820 (92%), Gaps = 2/820 (0%)

Query: 2   FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
           FV+SVLPPGGE+L+GDEVD+IV FK +LGIDDPDAA+MH+EIGR++FRQRLEVGDRD D+
Sbjct: 179 FVSSVLPPGGEELKGDEVDRIVSFKNSLGIDDPDAASMHMEIGRKIFRQRLEVGDRDADV 238

Query: 62  EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
           EQR AFQKLIYVS LVFG+ASSFLLPWKRVFKVTDSQ+E+A+RDNA+RL+ASKLKSVGRD
Sbjct: 239 EQRRAFQKLIYVSNLVFGDASSFLLPWKRVFKVTDSQIEVAVRDNAQRLFASKLKSVGRD 298

Query: 122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
           +DAE +V LR+EQ   RLSD LAE+LFR HTRKLVEENI  A+ ILKSRT+ V GV+Q V
Sbjct: 299 IDAEQLVALRKEQQLCRLSDELAENLFRTHTRKLVEENISVAIGILKSRTKAVPGVSQAV 358

Query: 182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
            ELD+VLAFNNLLIS + HP+ DRFARGVGPVSLVGGE+DGDRK++DLKLLYRAYV+D+L
Sbjct: 359 AELDRVLAFNNLLISFKTHPDVDRFARGVGPVSLVGGEYDGDRKIEDLKLLYRAYVSDAL 418

Query: 242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
           SGGRME+ KLAALNQLRNIFGLGKRE+EAI +DVTSKVYRKRL QAV+ G LE ADSKA+
Sbjct: 419 SGGRMEDDKLAALNQLRNIFGLGKREAEAISLDVTSKVYRKRLAQAVADGELEMADSKAA 478

Query: 302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
           FLQ+LC+ELHFDPQKASE+HEEIYRQKLQ+CVADGELN+EDVAALLRLRVMLC+PQQ VE
Sbjct: 479 FLQNLCDELHFDPQKASELHEEIYRQKLQKCVADGELNEEDVAALLRLRVMLCIPQQIVE 538

Query: 362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
            AHSDICGSLFEKVVK+AI+SGV+GYD E++K+VRKAAHGLRLTRE A+SIASKAVR+IF
Sbjct: 539 TAHSDICGSLFEKVVKEAIASGVDGYDAEIQKSVRKAAHGLRLTREVAISIASKAVRKIF 598

Query: 422 VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDE 481
           + YIKRARAA NRTE+AKELKK+I FNTLVVT LV DIKGES+D S EEP+KE+  QT  
Sbjct: 599 INYIKRARAAGNRTESAKELKKMIAFNTLVVTNLVEDIKGESADISTEEPVKEDITQT-- 656

Query: 482 DEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVT 541
           D+EEWESL+TLKKI P+KEL EK+GKPGQTEI LKDDLPERDRTDLYKTYLLYCLTGEVT
Sbjct: 657 DDEEWESLQTLKKIRPNKELTEKLGKPGQTEITLKDDLPERDRTDLYKTYLLYCLTGEVT 716

Query: 542 KIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 601
           ++PFGA ITTKKDDSEY+LL+QLGGILGL+++EIV+VHRGLAEQAFRQQAEVILADGQLT
Sbjct: 717 RVPFGAQITTKKDDSEYLLLNQLGGILGLSSQEIVEVHRGLAEQAFRQQAEVILADGQLT 776

Query: 602 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVD 661
           KAR+EQLN +QKQVGLP EYAQKIIK+ITTTKMAAAIETAV QG+LN+KQIRELKEA+VD
Sbjct: 777 KARVEQLNNLQKQVGLPQEYAQKIIKSITTTKMAAAIETAVTQGRLNMKQIRELKEANVD 836

Query: 662 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNR 721
           LD+M+SE+LRE LFKKTVD+IFSSGTGEFD EEVYEKIP+DL+IN EKAR VVHELA++R
Sbjct: 837 LDSMVSENLRETLFKKTVDDIFSSGTGEFDNEEVYEKIPSDLNINKEKARGVVHELAKSR 896

Query: 722 LSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPA 781
           LSNSL+QAVSLLRQ+N +GVVSSLNDLLACDKAVP++P+SWE+P+ELADL+ IY+KS+P 
Sbjct: 897 LSNSLVQAVSLLRQRNHKGVVSSLNDLLACDKAVPSQPVSWEVPEELADLYTIYLKSDPT 956

Query: 782 PEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
           PE L+RLQYLLGI+DSTAAALREMGD LL+  AEEE FVF
Sbjct: 957 PENLSRLQYLLGINDSTAAALREMGDRLLNTTAEEEKFVF 996

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356500924\|ref\|XP_003519280.1\| PREDICTED: uncharacterized protein LOC100810328 [Glycine max]	Back alignment and taxonomy information

>gi\|359478503\|ref\|XP_002276796.2\| PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera] gi\|297745792\|emb\|CBI15848.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454979\|ref\|XP_004145231.1\| PREDICTED: protein TIC110, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147789732\|emb\|CAN60839.1\| hypothetical protein VITISV_038562 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224124724\|ref\|XP_002319406.1\| predicted protein [Populus trichocarpa] gi\|222857782\|gb\|EEE95329.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224146640\|ref\|XP_002326080.1\| predicted protein [Populus trichocarpa] gi\|222862955\|gb\|EEF00462.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255553373\|ref\|XP_002517728.1\| conserved hypothetical protein [Ricinus communis] gi\|223543126\|gb\|EEF44660.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|357491373\|ref\|XP_003615974.1\| Chloroplast inner envelope protein (IEP110) [Medicago truncatula] gi\|355517309\|gb\|AES98932.1\| Chloroplast inner envelope protein (IEP110) [Medicago truncatula]	Back alignment and taxonomy information

>gi\|1495768\|emb\|CAA92823.1\| chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		821
TAIR\|locus:2007437		1016	TIC110 "translocon at the inne	0.997	0.806	0.720	4.6e-311

TAIR\|locus:2007437 TIC110 "translocon at the inner envelope membrane of chloroplasts 110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2984 (1055.5 bits), Expect = 4.6e-311, P = 4.6e-311
 Identities = 592/822 (72%), Positives = 690/822 (83%)

Query:     2 FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
             +VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD 
Sbjct:   196 YVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDA 255

Query:    62 EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
             EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD
Sbjct:   256 EQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRD 315

Query:   122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
             ++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VV
Sbjct:   316 INVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVV 375

Query:   182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
             EEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+L
Sbjct:   376 EELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDAL 435

Query:   242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
             SGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA 
Sbjct:   436 SGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAK 495

Query:   302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
             +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+
Sbjct:   496 YLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVD 555

Query:   362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
              AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F
Sbjct:   556 TAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVF 615

Query:   422 VIYIKXXXXXXXXXXXXXXLKKLITFNTLVVTELVADIKGESXXXXXXXXXXXXXXXXXX 481
               YI+              LKK+I FNTLVVTE+VADIKGES                  
Sbjct:   616 TNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIKGESSDKAPEEDPVQEKEEDDE 675

Query:   482 XXXXXXXXXXXXXITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVT 541
                            P KELAEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEVT
Sbjct:   676 DEEWGSLESLRKT-RPDKELAEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEVT 734

Query:   542 KIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 601
             +IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQLT
Sbjct:   735 RIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQLT 794

Query:   602 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVD 661
             KAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V 
Sbjct:   795 KARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANVS 854

Query:   662 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNR 721
             LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++R
Sbjct:   855 LDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQSR 914

Query:   722 LSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNP- 780
             LSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+P 
Sbjct:   915 LSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDPK 974

Query:   781 -APEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
              APEK+ RLQYLLGI DSTA ALREM D  LS+ AEE NFVF
Sbjct:   975 PAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEGNFVF 1016


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      821       776   0.00093  121 3  11 22  0.41    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  308 KB (2159 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  71.98u 0.13s 72.11t   Elapsed:  00:00:03
  Total cpu time:  71.98u 0.13s 72.11t   Elapsed:  00:00:03
  Start:  Tue May 21 05:16:46 2013   End:  Tue May 21 05:16:49 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0031897 "Tic complex" evidence=TAS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LPR9	TI110_ARATH	No assigned EC number	0.7533	0.9963	0.8051	yes	no
O24303	TI110_PEA	No assigned EC number	0.7356	0.9975	0.8222	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		821
PF05099		140	TerB: Tellurite resistance protein TerB; InterPro:	92.6
cd07316		106	terB_like_DjlA N-terminal tellurium resistance pro	92.21
PF04391		188	DUF533: Protein of unknown function (DUF533); Inte	90.15
PF05099		140	TerB: Tellurite resistance protein TerB; InterPro:	89.74
cd07313		104	terB_like_2 tellurium resistance terB-like protein	89.45
cd07313		104	terB_like_2 tellurium resistance terB-like protein	89.19
cd07176		111	terB tellurite resistance protein terB. This famil	88.16
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	85.68
PF03735		73	ENT: ENT domain; InterPro: IPR005491 This entry re	83.07
cd07311		150	terB_like_1 tellurium resistance terB-like protein	82.92
cd07316		106	terB_like_DjlA N-terminal tellurium resistance pro	82.18
cd07311		150	terB_like_1 tellurium resistance terB-like protein	80.05

>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

Probab=92.60  E-value=0.32  Score=46.51  Aligned_cols=112  Identities=22%  Similarity=0.381  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhh
Q 003418          585 QAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD  663 (821)
Q Consensus       585 ~ayrqql~~~L~~G~Ld~a~a~~L~~Iq-~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~  663 (821)
                      .+++=.+.-+.+||.++.+....+..+. ...++|+.....++..+...+-         . ..+..+.      -..+.
T Consensus        25 a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~------~~~l~   88 (140)
T PF05099_consen   25 ALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQ---------E-PIDLEEL------LRELR   88 (140)
T ss_dssp             HHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHH---------H-CCHHHHH------HHHHC
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh---------c-cccHHHH------HHHHH
Confidence            3445566778889999999999998877 9999999988877654322211         1 1122222      11244


Q ss_pred             hhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHH
Q 003418          664 NMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR  712 (821)
Q Consensus       664 ~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~  712 (821)
                      ..++.+.|..+++..+.=+.++|..+-.+.+++.++...|||+.+.-..
T Consensus        89 ~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~  137 (140)
T PF05099_consen   89 DSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR  137 (140)
T ss_dssp             TS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence            4466899999999999999999999888889999999999999876544

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.

>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins	Back alignment and domain information

>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins	Back alignment and domain information

>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2	Back alignment and domain information

>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2	Back alignment and domain information

>cd07176 terB tellurite resistance protein terB	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin	Back alignment and domain information

>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1	Back alignment and domain information

>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins	Back alignment and domain information

>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		821
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 66.0 bits (160), Expect = 4e-11
 Identities = 102/697 (14%), Positives = 185/697 (26%), Gaps = 236/697 (33%)

Query: 58  DGDM-EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLK 116
           D +  E ++ ++ ++ V          F   +   F   D      ++D  K + + +  
Sbjct: 8   DFETGEHQYQYKDILSV----------FEDAFVDNFDCKD------VQDMPKSILSKE-- 49

Query: 117 SVGRDVDAEHIVRLR-EEQLSYRLSDAL-----------AEDLFREH----TRKLVEENI 160
                 + +HI+  +     + RL   L            E++ R +       +  E  
Sbjct: 50  ------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 161 VTAL---SILKSRTRVVKGVAQV-----VEELDKVLAFNNLLISLRQHPNADRFARGVGP 212
             ++     ++ R R+     QV     V  L   L     L+ LR   N          
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKN---------- 152

Query: 213 VSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAA--LNQLR-------NIF-- 261
           V + G        +                 G   ++ +A       +        IF  
Sbjct: 153 VLIDG--------V----------------LG-SGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 262 GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 321
            L    S   ++++  K+  +              D       S  +       +   I 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQ-------------IDPN---WTSRSDHSSNIKLRIHSIQ 231

Query: 322 EEIYR----QKLQQC--VADGELNDEDVAAL-LRLRVMLCVPQQTVEAAHSDICGSLFEK 374
            E+ R    +  + C  V     N +   A  L  +++L     T     +D   +    
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTT 287

Query: 375 VVK-DAISSGVEGYDGEVKKAVRKAAHGLR---LTREA------AMSIASKAVR----RI 420
            +  D  S  +     EVK  + K     R   L RE        +SI ++++R      
Sbjct: 288 HISLDHHSMTLT--PDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 421 ----FVIYIKRARAAENRTEA--AKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKE 474
                V   K     E+        E +K+  F+ L V                   I  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFP-------------PSAHIPT 389

Query: 475 E-------EKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEI-NLKDDL--PERDR 524
                   +    +       L           L EK  K     I ++  +L     + 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLH-------KYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 525 TDL-------YKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVD 577
             L       Y     +              +     D  Y   S +G            
Sbjct: 443 YALHRSIVDHYNIPKTFDSDD----------LIPPYLDQ-YF-YSHIG------------ 478

Query: 578 VHRGLAEQA-----FRQ--------QAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQK 624
            H    E       FR         + ++   D     A    LN +Q Q+     Y   
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQ-QLKF---YKPY 533

Query: 625 IIKNITT-TKMAAAI-------ETAVAQGK-LNIKQI 652
           I  N     ++  AI       E  +   K  ++ +I
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		821
2h5n_A		133	Hypothetical protein PG_1108; SAD, MCSG,PSI, struc	93.38
2h5n_A		133	Hypothetical protein PG_1108; SAD, MCSG,PSI, struc	93.18
2ou3_A		161	Tellurite resistance protein of COG3793; structura	92.88
2ou3_A		161	Tellurite resistance protein of COG3793; structura	91.78
2jxu_A		153	TERB, KP-TERB; tellurite resistance protein, plasm	91.31
1uz3_A		102	EMSY protein; chromatin regulator, chromatin regul	84.04
2jxu_A		153	TERB, KP-TERB; tellurite resistance protein, plasm	82.4

>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2	Back alignment and structure

Probab=93.38  E-value=0.73  Score=43.39  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhh
Q 003418          586 AFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM  665 (821)
Q Consensus       586 ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~  665 (821)
                      ++.=.+..+.+||.+++++.+.+..+..++|++++.+..++....               .....+...+       ...
T Consensus        21 ~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~-------~~~   78 (133)
T 2h5n_A           21 IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL-------IAR   78 (133)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-------HHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------hccHHHHHHH-------HHc
Confidence            666678889999999999999999999999999999888888653               1122222211       133


Q ss_pred             ccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHH
Q 003418          666 ISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA  710 (821)
Q Consensus       666 i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekA  710 (821)
                      ++.+.|..+.+--+.=+.++|...-.+..+++++..-||++....
T Consensus        79 ~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~  123 (133)
T 2h5n_A           79 MDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV  123 (133)
T ss_dssp             SCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            568888888888888888888886666799999999999987655

PyMOL of 2h5n

>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2	Back alignment and structure

>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1	Back alignment and structure

>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1	Back alignment and structure

>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}	Back alignment and structure

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A	Back alignment and structure

>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		821
d2ou3a1		160	Tellurite resistance protein of COG3793 {Nostoc pu	93.74
d2ou3a1		160	Tellurite resistance protein of COG3793 {Nostoc pu	93.65
d1uz3a1		90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	89.23

>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}	Back information, alignment and structure

class: All alpha proteins
fold: TerB-like
superfamily: TerB-like
family: COG3793-like
domain: Tellurite resistance protein of COG3793
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

Probab=93.74  E-value=0.13  Score=47.06  Aligned_cols=111  Identities=8%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhh
Q 003418          585 QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDN  664 (821)
Q Consensus       585 ~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~  664 (821)
                      .+.+-.+..|-+||.++++++.++..+..+++.+++...++....               ......+.   .     ...
T Consensus        30 ~~~~~L~~vA~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~---~-----~~~   86 (160)
T d2ou3a1          30 IYMKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKTYE---------------ADEALEEV---I-----ARS   86 (160)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHCC---------------CCSCHHHH---H-----TTC
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccchHHHHHHhhc---------------cchhhHHH---H-----HHc
Confidence            345555667889999999999999999999999998876654321               11112111   1     112


Q ss_pred             hccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 003418          665 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA  718 (821)
Q Consensus       665 ~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~~  718 (821)
                      ..+.+.+..+++..+.=+.++|...-.+.+++.++...|||+.+....|.....
T Consensus        87 ~~~~~~~~~ll~~l~~va~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~~~  140 (160)
T d2ou3a1          87 PQVSMAQRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYY  140 (160)
T ss_dssp             TTGGGCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            256677889999999999999999888889999999999999999888765444

PyMOL of d2ou3a1

>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}	Back information, alignment and structure

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure