Citrus Sinensis ID: 003434
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| 224092282 | 994 | predicted protein [Populus trichocarpa] | 0.992 | 0.818 | 0.856 | 0.0 | |
| 225429932 | 985 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.826 | 0.847 | 0.0 | |
| 296081844 | 1002 | unnamed protein product [Vitis vinifera] | 0.992 | 0.812 | 0.829 | 0.0 | |
| 449507259 | 987 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.992 | 0.824 | 0.832 | 0.0 | |
| 449461319 | 992 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.820 | 0.828 | 0.0 | |
| 145360324 | 987 | uncharacterized protein [Arabidopsis tha | 0.991 | 0.823 | 0.809 | 0.0 | |
| 297825651 | 996 | hypothetical protein ARALYDRAFT_481432 [ | 0.991 | 0.816 | 0.805 | 0.0 | |
| 3643603 | 993 | unknown protein [Arabidopsis thaliana] | 0.991 | 0.818 | 0.803 | 0.0 | |
| 356507927 | 986 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.826 | 0.812 | 0.0 | |
| 356515615 | 983 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.829 | 0.809 | 0.0 |
| >gi|224092282|ref|XP_002309542.1| predicted protein [Populus trichocarpa] gi|222855518|gb|EEE93065.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1487 bits (3849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/816 (85%), Positives = 758/816 (92%), Gaps = 2/816 (0%)
Query: 5 QVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQKRTLKLLEAGLLLHPRVPLDKSNIAA 64
QVGR+IES VLPLELLQQLK SDFTDQQEY+ WQKRT+K+LEAGLLLHP VPLDKSN +
Sbjct: 181 QVGRRIESVVLPLELLQQLKLSDFTDQQEYEVWQKRTMKVLEAGLLLHPHVPLDKSNPTS 240
Query: 65 QRLRQIISAALDRPIETGRNNESMQVLRSTVISLASRSDGSLNEPCHWADGFPFNLRLYE 124
QRLRQII A+DRPIETG+NNESMQVLRS V+SLASRSDGSL+E CHWADG P NLRLYE
Sbjct: 241 QRLRQIIQGAMDRPIETGKNNESMQVLRSAVMSLASRSDGSLSEICHWADGIPLNLRLYE 300
Query: 125 MLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADT 184
MLL+ACFD + ETS+I+E+DELME IKKTW ILGMNQMLHN+CFTWVLFHRFVATGQA+T
Sbjct: 301 MLLQACFDVNDETSVIDEIDELMEHIKKTWTILGMNQMLHNLCFTWVLFHRFVATGQAET 360
Query: 185 DLLYAADNQLAEVAKDAKATKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNLETMD 244
DLL AAD QLAEVA+DAK TKDP+Y+KILSSTL+SI+ WAEKRLLAYHDTFD GN+ETM
Sbjct: 361 DLLDAADGQLAEVARDAKTTKDPQYSKILSSTLSSILGWAEKRLLAYHDTFDSGNVETMQ 420
Query: 245 GIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADSSRR 304
GIVSLGVS+AKIL EDISNEYRR+RKGEVDV R+R++TYIRSSLRTAFAQRMEKADSSRR
Sbjct: 421 GIVSLGVSAAKILVEDISNEYRRKRKGEVDVVRARIDTYIRSSLRTAFAQRMEKADSSRR 480
Query: 305 ASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQF 364
ASKNQPNPLPVLAILAKDVGELA+ E++VFSPILKRWHP +AGVAVATLHACYGNEIKQF
Sbjct: 481 ASKNQPNPLPVLAILAKDVGELAVNEKQVFSPILKRWHPFSAGVAVATLHACYGNEIKQF 540
Query: 365 ISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLV 424
IS I ELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAE AIA+LV
Sbjct: 541 ISGITELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEAAIADLV 600
Query: 425 KMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMHP 484
K W+K R+DRLKEWVDRNLQQE WNPQ NQEG+A SAVEVLRIIDETLDA+FQLPIPMHP
Sbjct: 601 KAWIKARLDRLKEWVDRNLQQEVWNPQANQEGYAPSAVEVLRIIDETLDAYFQLPIPMHP 660
Query: 485 ALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNS 544
LLPDLM GLDRCLQYY TKAKSGCGSRNTYVPTMPALTRCT SKF WKKKEKS N+
Sbjct: 661 VLLPDLMTGLDRCLQYYATKAKSGCGSRNTYVPTMPALTRCTMESKF--AWKKKEKSANT 718
Query: 545 QKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNG 604
QK+NSQVATMNG+ SF VPQLC+RIN+ HRI+SELDVLEKR+ITHLRN ESAHAEDFSNG
Sbjct: 719 QKRNSQVATMNGDNSFGVPQLCVRINTLHRIRSELDVLEKRIITHLRNSESAHAEDFSNG 778
Query: 605 LGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELERN 664
L KKFELTPAAC+EGVQ LSEAVAYK+VFHDLSHV WDGLYVGEPSSSRIEP +QE+ERN
Sbjct: 779 LAKKFELTPAACIEGVQALSEAVAYKLVFHDLSHVFWDGLYVGEPSSSRIEPFIQEVERN 838
Query: 665 LLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLF 724
LLIIS+ +HERVR R++TDIM+ASFDGFLLVLLAGGPSRAF RQDSQIIEDDFKSLKDLF
Sbjct: 839 LLIISNIIHERVRPRVVTDIMRASFDGFLLVLLAGGPSRAFMRQDSQIIEDDFKSLKDLF 898
Query: 725 WANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSG 784
WANGDGLP ELIDKFS T R +LPLFRTDTESLIER+RRVTLETYGSSARS+LPLPPTSG
Sbjct: 899 WANGDGLPTELIDKFSTTVRSILPLFRTDTESLIERYRRVTLETYGSSARSKLPLPPTSG 958
Query: 785 QWNPTEPNTLLRVLCYRNDEAATRFLKKTYNLPKKL 820
QWNPT+PNTLLR+LCYRNDEAA+R+LKKTYNLPKKL
Sbjct: 959 QWNPTDPNTLLRMLCYRNDEAASRYLKKTYNLPKKL 994
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429932|ref|XP_002283826.1| PREDICTED: uncharacterized protein LOC100250865 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296081844|emb|CBI20849.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449507259|ref|XP_004162979.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101217303 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449461319|ref|XP_004148389.1| PREDICTED: uncharacterized protein LOC101217303 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|145360324|ref|NP_180151.3| uncharacterized protein [Arabidopsis thaliana] gi|110737479|dbj|BAF00682.1| hypothetical protein [Arabidopsis thaliana] gi|330252660|gb|AEC07754.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297825651|ref|XP_002880708.1| hypothetical protein ARALYDRAFT_481432 [Arabidopsis lyrata subsp. lyrata] gi|297326547|gb|EFH56967.1| hypothetical protein ARALYDRAFT_481432 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|3643603|gb|AAC42250.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356507927|ref|XP_003522714.1| PREDICTED: uncharacterized protein LOC100814675 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356515615|ref|XP_003526494.1| PREDICTED: uncharacterized protein LOC100796233 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| TAIR|locus:2043515 | 987 | AT2G25800 "AT2G25800" [Arabido | 0.991 | 0.823 | 0.796 | 0.0 | |
| TAIR|locus:2061619 | 952 | AT2G20010 "AT2G20010" [Arabido | 0.985 | 0.848 | 0.621 | 2.3e-275 | |
| TAIR|locus:2050997 | 1039 | AT2G33420 "AT2G33420" [Arabido | 0.992 | 0.783 | 0.417 | 1.1e-179 | |
| TAIR|locus:2018339 | 1035 | AT1G04470 "AT1G04470" [Arabido | 0.992 | 0.786 | 0.402 | 3.8e-172 | |
| TAIR|locus:2169424 | 1101 | AT5G06970 "AT5G06970" [Arabido | 0.952 | 0.709 | 0.326 | 2.1e-107 | |
| TAIR|locus:2139707 | 1117 | AT4G11670 "AT4G11670" [Arabido | 0.948 | 0.696 | 0.256 | 1e-60 |
| TAIR|locus:2043515 AT2G25800 "AT2G25800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3426 (1211.1 bits), Expect = 0., P = 0.
Identities = 651/817 (79%), Positives = 733/817 (89%)
Query: 5 QVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQKRTLKLLEAGLLLHPRVPLDKSNIAA 64
QVGRKIES VLPLELLQQLK SDFTDQQEYDAW KR+LK+LEAGLLLHPRVPLDK+N ++
Sbjct: 174 QVGRKIESVVLPLELLQQLKSSDFTDQQEYDAWLKRSLKVLEAGLLLHPRVPLDKTN-SS 232
Query: 65 QRLRQIISAALDRPIETGRNNESMQVLRSTVISLASRSDGSLNEPCHWADGFPFNLRLYE 124
QRLRQII ALDRP+ETGRNNE MQ LRS V+SLA+RSDGS ++ CHWADG PFNLRLYE
Sbjct: 233 QRLRQIIHGALDRPLETGRNNEQMQSLRSAVMSLATRSDGSFSDSCHWADGSPFNLRLYE 292
Query: 125 MLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADT 184
+LLEACFDS+ TS++EEVD+LME IKKTWVILG+NQMLHN+CFTW+LF R+V TGQ +
Sbjct: 293 LLLEACFDSNDATSMVEEVDDLMEHIKKTWVILGINQMLHNLCFTWLLFSRYVVTGQVEM 352
Query: 185 DLLYAADNQLAEVAKDAKATKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNLETMD 244
DLL+A D+QLAEVAKDAK TKDPEY+++LSSTL++I+ WAEKRLLAYHDTFD GN+ TM+
Sbjct: 353 DLLHACDSQLAEVAKDAKTTKDPEYSQVLSSTLSAILGWAEKRLLAYHDTFDRGNIHTME 412
Query: 245 GIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADSSRR 304
GIVSLGVS+A+IL EDISNEYRRRRKGEVDV R+R+ETYIRSSLRT+FAQRMEKADSSRR
Sbjct: 413 GIVSLGVSAARILVEDISNEYRRRRKGEVDVARTRIETYIRSSLRTSFAQRMEKADSSRR 472
Query: 305 ASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQF 364
AS+NQ NPLPVLAILAKD+GELAI+E+R+FSPILKRWHP AAGVAVATLH CYGNEIKQF
Sbjct: 473 ASRNQKNPLPVLAILAKDIGELAIQEKRMFSPILKRWHPFAAGVAVATLHVCYGNEIKQF 532
Query: 365 ISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLV 424
I+ I ELTPDAVQ+LRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPP+EAE IANLV
Sbjct: 533 IAGISELTPDAVQILRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPFEAETVIANLV 592
Query: 425 KMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEG-FASSAVEVLRIIDETLDAFFQLPIPMH 483
K W+K RIDRLKEWVDRNLQQE W P +N EG +A SA EVLRI DETL+AFFQLPIPMH
Sbjct: 593 KDWIKARIDRLKEWVDRNLQQEVWKPLENLEGGYAQSAAEVLRITDETLEAFFQLPIPMH 652
Query: 484 PALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWXXXXXXXX 543
PA+LPDL+ GLD+ LQYYV+KAKSGCGSR TY+PTMPALTRCTTGSKFQ W
Sbjct: 653 PAVLPDLIIGLDKYLQYYVSKAKSGCGSRTTYMPTMPALTRCTTGSKFQ--WKKKEKTPT 710
Query: 544 XXXXXXXVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSN 603
V+ MNGE SF V Q+C+RINS H+I+SELDV+EKRVITHLRNCESAH +DFSN
Sbjct: 711 TQKRESQVSVMNGENSFGVTQICVRINSLHKIRSELDVVEKRVITHLRNCESAHTDDFSN 770
Query: 604 GLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELER 663
GL KKFELTPAAC+EGVQQLSE++AYK+VFHDLSH LWDGLY+G+ SSSRI+P L+ELE+
Sbjct: 771 GLEKKFELTPAACIEGVQQLSESLAYKVVFHDLSHTLWDGLYIGDLSSSRIDPFLKELEQ 830
Query: 664 NLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDL 723
NL +I++TVHERVRTRIITDIM+AS DGFLLVLLAGGPSRAFTRQDSQI+E+DFKS+KD+
Sbjct: 831 NLTVIAETVHERVRTRIITDIMRASLDGFLLVLLAGGPSRAFTRQDSQIMEEDFKSMKDM 890
Query: 724 FWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTS 783
FWANGDGL ++LIDKFS T RGVLPLF TDT+SLIERF+ TLE YGSSA+SRLPLPPTS
Sbjct: 891 FWANGDGLAMDLIDKFSTTVRGVLPLFSTDTDSLIERFKGTTLEAYGSSAKSRLPLPPTS 950
Query: 784 GQWNPTEPNTLLRVLCYRNDEAATRFLKKTYNLPKKL 820
GQWN EPNTLLRVLCYRNDE+ATRFLKKTYNLPKKL
Sbjct: 951 GQWNGMEPNTLLRVLCYRNDESATRFLKKTYNLPKKL 987
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| TAIR|locus:2061619 AT2G20010 "AT2G20010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2050997 AT2G33420 "AT2G33420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2018339 AT1G04470 "AT1G04470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169424 AT5G06970 "AT5G06970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2139707 AT4G11670 "AT4G11670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 820 | |||
| pfam05664 | 677 | pfam05664, DUF810, Protein of unknown function (DU | 0.0 | |
| pfam10540 | 119 | pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoo | 0.002 |
| >gnl|CDD|218680 pfam05664, DUF810, Protein of unknown function (DUF810) | Back alignment and domain information |
|---|
Score = 757 bits (1957), Expect = 0.0
Identities = 327/602 (54%), Positives = 406/602 (67%), Gaps = 39/602 (6%)
Query: 4 LQVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQKRTLKLLEAGLLLHPRVPLDKSNIA 63
QVGR+ ES VLPLELLQQLK S+F D +EY+AWQKR LKLLE GL+LHP VPLDKSN +
Sbjct: 94 GQVGRREESIVLPLELLQQLKASEFPDPKEYEAWQKRQLKLLEEGLILHPCVPLDKSNRS 153
Query: 64 AQRLRQII-----SAALDRPIETGRNNESMQVLRSTVISLASRS--DGSLNEPCHWADGF 116
AQRLR+II S +L RP +T + +E ++ LRS V+SLA R G + CHWADG+
Sbjct: 154 AQRLREIIRAIDESDSLPRPTDTNKRSEILRSLRSVVMSLAWRPSRGGMTGDSCHWADGY 213
Query: 117 PFNLRLYEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRF 176
P N+RLYE LLEA FD + S+ EEVDE++E +KKTW ILG+ + +HN+C W LF ++
Sbjct: 214 PLNIRLYEKLLEAVFDQVDDGSLAEEVDEILELLKKTWSILGITETIHNVCLAWALFRQY 273
Query: 177 VATGQADTDLLYAADNQLAEVAKDAKA-TKDPEYAK------------ILSSTLTSIMSW 223
V TG + DLL AA QLAEVA DAK TK+ Y K +L+S L+SI+ W
Sbjct: 274 VVTG--EPDLLAAAIAQLAEVALDAKRGTKEALYLKSLARSVTTIHSPLLASALSSILGW 331
Query: 224 AEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETY 283
+EKRLL YHDTFD+GN+ M+ IVS+ S+A+IL EDIS E RR RK R R++ Y
Sbjct: 332 SEKRLLDYHDTFDEGNIGVMEDIVSIAYSAARILGEDISAELRRARKTCA---RDRIDEY 388
Query: 284 IRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHP 343
IRSSL+ AFA+ D+ NPL VLA LA++ +LA KE FSPILKRWHP
Sbjct: 389 IRSSLKNAFAK-----DAKVADGDATTNPLHVLAQLAEETADLAKKELERFSPILKRWHP 443
Query: 344 LAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDG 403
AAGVA ATLH CYGN++KQF++ ELT DAV+VL AADKLEK LVQIA +VD DDG
Sbjct: 444 QAAGVAAATLHKCYGNDLKQFLAGGTELTEDAVEVLWAADKLEKALVQIA---AVDCDDG 500
Query: 404 GKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVE 463
GKA+IREM PYE E I NLVK W+ +IDRLKEWVDR ++QE W P+ N + +A SAVE
Sbjct: 501 GKAVIREMEPYEVESVIGNLVKTWINEKIDRLKEWVDRAIEQETWKPKSNDQRYAPSAVE 560
Query: 464 VLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALT 523
VLRI++ETLD FF LPIP H +LL L G+D Q Y +K S GSR VP +P LT
Sbjct: 561 VLRIVEETLDGFFGLPIPAHVSLLRALTEGIDAAFQKYTSKVVSSLGSREDLVPPLPPLT 620
Query: 524 RCTTGSKFQGVWKKKEKSPNS-QKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVL 582
RC S +WKKK K + ++ SQ VP LC+R+N+ H ++S+L L
Sbjct: 621 RCKKASGIVDLWKKKFKPSSPPDERKSQNID-----ELGVPALCVRLNTLHYLRSQLSSL 675
Query: 583 EK 584
EK
Sbjct: 676 EK 677
|
This family consists of several plant proteins of unknown function. Length = 677 |
| >gnl|CDD|220800 pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoordinated) homology domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| PF05664 | 677 | DUF810: Protein of unknown function (DUF810); Inte | 100.0 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 100.0 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 100.0 | |
| PF10540 | 137 | Membr_traf_MHD: Munc13 (mammalian uncoordinated) h | 99.87 | |
| PF06046 | 566 | Sec6: Exocyst complex component Sec6; InterPro: IP | 98.93 | |
| KOG2180 | 793 | consensus Late Golgi protein sorting complex, subu | 97.8 | |
| PF06292 | 106 | DUF1041: Domain of Unknown Function (DUF1041); Int | 97.78 | |
| KOG3543 | 1218 | consensus Ca2+-dependent activator protein [Signal | 97.55 | |
| PF04091 | 311 | Sec15: Exocyst complex subunit Sec15-like ; InterP | 97.21 | |
| KOG2286 | 667 | consensus Exocyst complex subunit SEC6 [Intracellu | 96.96 | |
| COG5173 | 742 | SEC6 Exocyst complex subunit SEC6 [Intracellular t | 96.94 | |
| PF04437 | 494 | RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 | 96.71 |
| >PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-158 Score=1373.59 Aligned_cols=566 Identities=60% Similarity=0.976 Sum_probs=539.3
Q ss_pred cccccccccccccccHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcHHHHHHHHHHHh-----hcc
Q 003434 2 CWLQVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQKRTLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISA-----ALD 76 (820)
Q Consensus 2 ~~~~~g~~~~~~~lplell~~~~~s~F~~~~~y~~Wq~rql~~le~gl~~~p~~~~~~~~~~~~~lr~~~~~-----~~~ 76 (820)
++||+|||+|+|+|||||||++|+|||+|++||++|||||||+|||||++||++|+|++|++|+|||+++++ ++.
T Consensus 92 ~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~lr~~~~~~~~~~~~~ 171 (677)
T PF05664_consen 92 AAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPLDKSNASAQRLRQIIAKIREDEAED 171 (677)
T ss_pred HHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCccccchhHHHHHHHHHhcccccccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCcccccchhHHHHHHHHHHHhhccC-CCC-CCCcccccCCCCCCHHHHHHHHHHhhccCCCccchHhHHHHHHHHHhhh
Q 003434 77 RPIETGRNNESMQVLRSTVISLASRS-DGS-LNEPCHWADGFPFNLRLYEMLLEACFDSSYETSIIEEVDELMEQIKKTW 154 (820)
Q Consensus 77 ~~~~~~~~~e~~~~l~~~~~~la~r~-~~~-~~e~chWadg~pln~rlY~~LL~~~fD~~de~~l~~e~dElLe~lk~tW 154 (820)
+|++||+++|+||+||++|++||||+ .+| ++|+||||||||+|+|+|++||++|||++|||+|+||+||+||+||+||
T Consensus 172 ~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW 251 (677)
T PF05664_consen 172 KPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTW 251 (677)
T ss_pred CcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999995 566 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhh-cCCCchhHH------------hHHHHHHhHH
Q 003434 155 VILGMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAK-ATKDPEYAK------------ILSSTLTSIM 221 (820)
Q Consensus 155 ~~LgI~~~~h~vcf~wVlf~qfv~t~e~e~~lL~~a~~~l~ev~~d~k-~~~~~~~~~------------~l~s~l~~i~ 221 (820)
++|||||++||+||+||+|||||+|| |+|||.+|+++|++|+.|+| .++++.|.+ +|+|+|++|+
T Consensus 252 ~~LGIt~~lHn~cf~WVlF~qyv~tg--e~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L~si~ 329 (677)
T PF05664_consen 252 SILGITQTLHNVCFAWVLFRQYVATG--EPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVLSSIQ 329 (677)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999 79999999999999999998 699999999 9999999999
Q ss_pred HHHHHHHhhhHhhhcCCChHHHhHHHHHHHHHhhhhhccchhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccc
Q 003434 222 SWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADS 301 (820)
Q Consensus 222 ~W~~k~L~~yH~~f~~~~~~~m~~~~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yI~~s~~~af~~~l~~~~~ 301 (820)
+|++|||+|||+||++++++.|+++++|++.+++|+++|++..++.+.. ..++++|+.||++|+++||++..+..++
T Consensus 330 ~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~~~---~~~~~~ie~YIrsSi~~Af~~~~~~~~~ 406 (677)
T PF05664_consen 330 GWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRKRS---KVARSRIESYIRSSIKAAFARMASSVDS 406 (677)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhhhc---cchHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999877765442 2788999999999999999998887776
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccCccccccHHHHHHHHHhHHHHHHHHhhhhcHHHHHHhhh
Q 003434 302 SRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRA 381 (820)
Q Consensus 302 ~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~lt~~~~~vl~a 381 (820)
+. ..++.|+|++||++|++||.+|+++|||+|++|||+|++|||++||+|||++||+|+++++++|+++++++++
T Consensus 407 ~~-----~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~a 481 (677)
T PF05664_consen 407 RS-----DSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTPDVVEVLQA 481 (677)
T ss_pred cc-----cccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHH
Confidence 65 3689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCCcccH
Q 003434 382 ADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSA 461 (820)
Q Consensus 382 ad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~hS~Sv 461 (820)
||+|||+|++|+ +++|+||||+++|+|+||++|+++.+||++||+++.+++.+||+||+++|+|+|++++++||+||
T Consensus 482 A~~LEk~Lvq~~---~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~Sv 558 (677)
T PF05664_consen 482 ADKLEKALVQMV---SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSV 558 (677)
T ss_pred HHHHHHHHHHHH---HhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchH
Confidence 999999999998 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCC
Q 003434 462 VEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKS 541 (820)
Q Consensus 462 VDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~ 541 (820)
|||||||+||+|+||+|+||+++.+|++|++||+++||+||++++++||++++|+|++|+||||+++++|++.|||+..+
T Consensus 559 VEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~ 638 (677)
T PF05664_consen 559 VEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKS 638 (677)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred CCcccccccccccCCccccccCcceEEeccHHHHHHHHHHHHH
Q 003434 542 PNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEK 584 (820)
Q Consensus 542 ~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L~~Lek 584 (820)
...+.... ....++.++|++|||||||||+++||++|||
T Consensus 639 ~~~~~~~~----~~~~~~~~~~~lcVrLNtL~yil~qL~~LEK 677 (677)
T PF05664_consen 639 STNPDERF----SSKINSQFTPRLCVRLNTLEYILSQLDKLEK 677 (677)
T ss_pred cccccccc----ccCcccCccCceeeeecHHHHHHHHHHhhcC
Confidence 43222111 0123588999999999999999999999985
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p | Back alignment and domain information |
|---|
| >PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex | Back alignment and domain information |
|---|
| >KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides | Back alignment and domain information |
|---|
| >KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane | Back alignment and domain information |
|---|
| >KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Length = 341 | Back alignment and structure |
|---|
Score = 132 bits (331), Expect = 8e-34
Identities = 53/361 (14%), Positives = 121/361 (33%), Gaps = 57/361 (15%)
Query: 423 LVKMWLKTRIDRLKEWVDRNLQQEDWNPQQ---NQEGFASSAVEVLRIIDETLDAFFQLP 479
V WL + ++++ L+++ + Q F+ S V+V ++++ + +L
Sbjct: 14 FVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLE 73
Query: 480 IP---MHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWK 536
P + + + L Y +Y C + Q +
Sbjct: 74 CPDPQIVGHYMRRFAKTISNVLLQYADIVSK---DFASYCSKEKEKVPCILMNNTQQLRV 130
Query: 537 KKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESA 596
+ EK + M G+ ELD + L+ +
Sbjct: 131 QLEKMFEA---------MGGK--------------------ELDAEASGTLKELQVKLNN 161
Query: 597 HAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGEPSSSRIEP 656
++ S+ F+ CV + V + V + + + ++P
Sbjct: 162 VLDELSHVFATSFQPHIEECVRQMGD-----ILSQVKGTGNVPASACSSVAQDADNVLQP 216
Query: 657 LLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGG------------PSRA 704
++ L+ NL + + + V R++ ++ K + ++ +++
Sbjct: 217 IMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKS 276
Query: 705 FTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFS--ATARGVLPLFRTDTESLIERFR 762
T + ++E ++K F A G GL ++K + R L L+ T+ LI+ F
Sbjct: 277 LTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFV 336
Query: 763 R 763
+
Sbjct: 337 Q 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| 3swh_A | 341 | MUNC13-1, protein UNC-13 homolog A; alpha helical, | 100.0 | |
| 2fji_1 | 399 | Exocyst complex component SEC6; exocytosis, tandem | 98.87 | |
| 2a2f_X | 325 | Exocyst complex component SEC15; all helical struc | 96.58 | |
| 3hr0_A | 263 | COG4; conserved oligomeric golgi complex, intracel | 94.65 | |
| 3fhn_A | 706 | Protein transport protein TIP20; TIP20P, vesicle t | 89.03 |
| >3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-50 Score=436.45 Aligned_cols=297 Identities=16% Similarity=0.293 Sum_probs=225.7
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCC---CCCCCcccHHHHHHHHHHHHHHHhCCCCCCC---c
Q 003434 411 MPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQ---NQEGFASSAVEVLRIIDETLDAFFQLPIPMH---P 484 (820)
Q Consensus 411 l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s---~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~---~ 484 (820)
++.| +.||.|||++|+++..+++.+||++|++.|+|+|.+ ++.+||+||||+|+||+|++++|.+|+||+. .
T Consensus 4 ~~~~--~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~ 81 (341)
T 3swh_A 4 VPEY--PAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVG 81 (341)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4555 889999999999999999999999999999998875 7889999999999999999999999999973 5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCc
Q 003434 485 ALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQ 564 (820)
Q Consensus 485 ~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~ 564 (820)
.|++.|++.|.+++..||+.+.... .. +..+ .+...
T Consensus 82 ~f~t~l~~~i~~~~~~Y~~~l~~~~----------------------~~-~~~~---------------------e~~~~ 117 (341)
T 3swh_A 82 HYMRRFAKTISNVLLQYADIVSKDF----------------------AS-YCSK---------------------EKEKV 117 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH-HCCT---------------------TSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hh-hhhh---------------------hcccc
Confidence 6789999999999999999995222 10 0000 01134
Q ss_pred ceEEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhhhccc
Q 003434 565 LCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGL 644 (820)
Q Consensus 565 lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~L 644 (820)
+||.+||+||+|.+|+++.+.| .|....+ ..+...+..+..++..+++++...+.|+.. ++++++.+-.
T Consensus 118 ~Cv~lNNie~lR~~L~~l~~~l--~~~~l~~--------~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~-~i~~~v~~m~ 186 (341)
T 3swh_A 118 PCILMNNTQQLRVQLEKMFEAM--GGKELDA--------EASGTLKELQVKLNNVLDELSHVFATSFQP-HIEECVRQMG 186 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TTTTSCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHHHHHhc--chhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7999999999999999999998 4543221 344566677888888888888888878764 6666544311
Q ss_pred ---c--cC--C-----------CCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH----------
Q 003434 645 ---Y--VG--E-----------PSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL---------- 696 (820)
Q Consensus 645 ---y--~~--~-----------v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VL---------- 696 (820)
+ .| . .++++|+|||+|||++|.+++++|++++++||++++|++++++++.++
T Consensus 187 ~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~ 266 (341)
T 3swh_A 187 DILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLK 266 (341)
T ss_dssp HHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSS
T ss_pred HHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhH
Confidence 1 11 0 136789999999999999999999999999999999999999999987
Q ss_pred --hcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHH--hHHHHHhhcccccCChHHHHHHHHHH
Q 003434 697 --LAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDK--FSATARGVLPLFRTDTESLIERFRRV 764 (820)
Q Consensus 697 --L~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~--~~~~l~~vL~L~~~~Td~LIe~f~~~ 764 (820)
++||++|.+++++|++++++|+.|++||||||+|||.+++|+ ++++++++|+||+++|++||++|+.+
T Consensus 267 ~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~~ 338 (341)
T 3swh_A 267 DHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQT 338 (341)
T ss_dssp CC----------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred hhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999987 59999999999999999999999754
|
| >2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00