Citrus Sinensis ID: 003497

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
ccccccccccccHHHccccccccccccccccHHHHHHHHHcccccccccccHHcHHHHHHHHHHccccccccccccccccccccccHHHcHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHccccEEEEHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccEEEEEEccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccHHHHHccccccccccccccccEEEcccccccccEEEEEccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHcccccEEEEccEEEccccccccccEEEEEc
cHHHHcccccccEEEcccccHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccHHHHHHHEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccEEEcccccccccEcEEEEccccccEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccEEEccccccccEEEEEEEcccccEEEEEEcccEHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEEccccccccHHHcccccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccccEEEEcccHHHHHHHHHHccccEEEEEccEEEccccEcccccEEEEEc
mlglaqknspfpiffckfrrnrpkfsclLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGAclstkvdflwpkleeqpgtfivdgvdvtgypifndEQVQKAIAFAKRahhgqfrktgdpylthciHTGRILAMlipssgkravDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRrinvnqgtlghEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasddesftTFDEHVLSMKDLLEAvvpfdilsDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIStsyipgmeVTLSSRLKSLYSIFSKmrrkdvgihkvydARALRVVvgdkngtlhgpaiQCCYSLLDIVHrlwipidgefddyivnpkpsgyqslhtavqgpdgsalEVQIRTQKMHEYAEHGLAAHWLYKetgnklqsissmdesdieassslskdtddhnpldtdlfqkysslkmghpvirveGSNLLAAVIIRVEKGGRELLVAVSFGLAASevvadrrpsfqiKCWEAYARLYKKasdewwcqpghgdwctclekytlcrdgmyhkqdqfgrlLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeaSINNKVRLLRTMLRWEEQLRSEASLRQSklggkangnpdsvvpgevvivcwpngeimrlrsgstaADAAMKVGLEGKLVLVNgqlvlpntelkdgdivevrv
mlglaqknspfpiFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQllrrhrrinvnqgtlghEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasdDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDlaksseaqkkaKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSkmrrkdvgihkvydARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSslskdtddhnpLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGlaasevvadrrpsfQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeasinnkVRLLRTMLRWEEQLRSEASLrqsklggkangnpdsvvpGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGqlvlpntelkdgdivevrv
MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHanviaaaaaagkahgavtsaithvavtavaiasGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPvdsvvsrrssdsvAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
**********FPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV****************TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLH************KVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA*******ALEVQIRTQKMHEYAEHGLAAHWLYKE***********************************LFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK**************************VRLLRTMLRW*************************VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTEL**********
*********P***FFCKFRRNRPKFSCLLDHAN*********************************************LEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL*************LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKS*********VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY*****************I**********DDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVV***********WEAYARLYKK*****WCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSA*******************************************************************VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAA*********VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS**********DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS********************DHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD***************MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEG*********************ASINNKVRLLRTMLRWEEQLRSEASL**SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query815 2.2.26 [Sep-21-2011]
P74007760 Probable guanosine-3',5'- N/A no 0.406 0.435 0.312 8e-36
Q49640787 Probable GTP pyrophosphok yes no 0.214 0.222 0.395 2e-28
Q6GG70736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
P0A0E9736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
P0A0F0736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
Q6G8T5736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
Q99TL8736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
Q931Q4736 GTP pyrophosphokinase OS= yes no 0.168 0.186 0.416 1e-27
Q8CS97729 GTP pyrophosphokinase OS= yes no 0.154 0.172 0.427 2e-27
Q5HNR8729 GTP pyrophosphokinase OS= yes no 0.154 0.172 0.427 2e-27
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 196/429 (45%), Gaps = 98/429 (22%)

Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
           +A  FA   H  Q RK+G+PY+ H +    +L  L    G  A+  + AG LHDVV+D  
Sbjct: 56  RAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDL---GGDEAM--IAAGFLHDVVEDTD 110

Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
            S+  IE  FG+E A LV GV++LS  N              T  H+       N R ++
Sbjct: 111 ISIEQIEALFGEETASLVEGVTKLSKFN-----------FSSTTEHQA-----ENFRRMF 154

Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
                   A+A++  +I   LA RL  +  L A         L P+  R++  +   +++
Sbjct: 155 L-------AMAKDIRVIVVKLADRLHNMRTLDA---------LSPEKQRRIARETKDIFA 198

Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
           P  NR+G  R             +   +D SF   +    S + +   VV  +   DR  
Sbjct: 199 PLANRLGIWRF------------KWELEDLSFKYLEPD--SYRKIQSLVV--EKRGDRES 242

Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
           R + + D+ +          ++D GI         E  E                L  R 
Sbjct: 243 RLETVKDMLRFR--------LRDEGI---------EHFE----------------LQGRP 269

Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
           K LY I+ KM  +D    ++YD  ALR++V  K           CY  L +VH ++ PI 
Sbjct: 270 KHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDVFKPIP 320

Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-GNK 522
           G F DYI  PKP+ YQSLHT V G     LE+QIRT++MH  AE+G+AAHW YKE+ G++
Sbjct: 321 GRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSE 380

Query: 523 LQSISSMDE 531
             +++S DE
Sbjct: 381 NATLTSTDE 389
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 Back     alignment and function description
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
297737338868 unnamed protein product [Vitis vinifera] 0.942 0.884 0.761 0.0
357481159889 GTP pyrophosphokinase [Medicago truncatu 0.993 0.911 0.687 0.0
449483240875 PREDICTED: uncharacterized LOC101208449 0.942 0.877 0.727 0.0
225454821816 PREDICTED: uncharacterized protein LOC10 0.871 0.870 0.705 0.0
255557973806 guanosine-3',5'-bis(diphosphate) 3'-pyro 0.938 0.949 0.686 0.0
356495744782 PREDICTED: uncharacterized protein LOC10 0.939 0.979 0.658 0.0
356538795793 PREDICTED: uncharacterized protein LOC10 0.938 0.964 0.652 0.0
449439043706 PREDICTED: uncharacterized protein LOC10 0.817 0.943 0.711 0.0
222623497808 hypothetical protein OsJ_08040 [Oryza sa 0.925 0.933 0.637 0.0
218191410847 hypothetical protein OsI_08580 [Oryza sa 0.959 0.923 0.615 0.0
>gi|297737338|emb|CBI26539.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1240 bits (3209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/801 (76%), Positives = 678/801 (84%), Gaps = 33/801 (4%)

Query: 48  VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
           V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 68  VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 127

Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
           IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 128 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 187

Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------- 213
           L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEE              
Sbjct: 188 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 247

Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
                  LADRLHNMRTIYALP  KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 248 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 307

Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLS 324
           LQPQ F +MRADLASMWSP NR G  RR     SSP PL+E+  A D E     D  V S
Sbjct: 308 LQPQTFLQMRADLASMWSPSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTS 367

Query: 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 384
           MKDLLEAV+PFDIL DRRKR  FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+E
Sbjct: 368 MKDLLEAVLPFDILLDRRKRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERE 427

Query: 385 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 444
           LLISTSY+PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA
Sbjct: 428 LLISTSYVPGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPA 487

Query: 445 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 504
           +QCCY+LL I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE
Sbjct: 488 VQCCYNLLSIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHE 547

Query: 505 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMG 564
           YAEHGLAAHWLYKET NKL S S +D+S+I+ASS  S+D ++ N +  D+FQKY SLK G
Sbjct: 548 YAEHGLAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAG 607

Query: 565 HPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYK 624
           HPV+RVEGS+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYK
Sbjct: 608 HPVLRVEGSHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYK 667

Query: 625 KASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAV 684
           K SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+  LTE+EESEYWAV
Sbjct: 668 KVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAV 727

Query: 685 VSAVFEGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA 736
           VSA+FEGK + S+ S        R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA
Sbjct: 728 VSAIFEGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEA 787

Query: 737 SLRQ--SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 794
            +RQ  +K+G      P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLV
Sbjct: 788 GMRQTKTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLV 847

Query: 795 NGQLVLPNTELKDGDIVEVRV 815
           NGQ VLPNT+LKDGD+VEVR+
Sbjct: 848 NGQYVLPNTQLKDGDVVEVRM 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357481159|ref|XP_003610865.1| GTP pyrophosphokinase [Medicago truncatula] gi|355512200|gb|AES93823.1| GTP pyrophosphokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449483240|ref|XP_004156531.1| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225454821|ref|XP_002274363.1| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557973|ref|XP_002520015.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223540779|gb|EEF42339.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356495744|ref|XP_003516733.1| PREDICTED: uncharacterized protein LOC100795418 [Glycine max] Back     alignment and taxonomy information
>gi|356538795|ref|XP_003537886.1| PREDICTED: uncharacterized protein LOC100799181 [Glycine max] Back     alignment and taxonomy information
>gi|449439043|ref|XP_004137297.1| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus] Back     alignment and taxonomy information
>gi|222623497|gb|EEE57629.1| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218191410|gb|EEC73837.1| hypothetical protein OsI_08580 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
UNIPROTKB|Q3A9Z8716 relA "GTP pyrophosphokinase" [ 0.154 0.175 0.471 5.9e-57
TIGR_CMR|CHY_2223716 CHY_2223 "GTP pyrophosphokinas 0.154 0.175 0.471 5.9e-57
TIGR_CMR|GSU_2236716 GSU_2236 "GTP pyrophosphokinas 0.253 0.289 0.361 7.3e-56
TIGR_CMR|BA_4637727 BA_4637 "GTP pyrophosphokinase 0.150 0.169 0.458 1.8e-52
TAIR|locus:2014335715 RSH3 "RELA/SPOT homolog 3" [Ar 0.213 0.243 0.451 2.3e-52
TAIR|locus:2088262709 RSH2 "RELA/SPOT homolog 2" [Ar 0.213 0.245 0.435 2.7e-52
UNIPROTKB|P66014738 relA "Bifunctional (p)ppGpp sy 0.214 0.237 0.385 2.8e-48
TIGR_CMR|DET_0005728 DET_0005 "GTP pyrophosphokinas 0.147 0.164 0.515 1.9e-47
TIGR_CMR|SPO_3203730 SPO_3203 "guanosine-3',5'-bis( 0.211 0.235 0.380 4.1e-47
TIGR_CMR|SO_0359701 SO_0359 "guanosine-3,5-bis(dip 0.228 0.265 0.344 2.4e-44
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 311 (114.5 bits), Expect = 5.9e-57, Sum P(3) = 5.9e-57
 Identities = 66/140 (47%), Positives = 88/140 (62%)

Query:   381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
             LE++L    SY   ++  +  R K LYSIF KMR +     +VYD  A+RV+V       
Sbjct:   220 LEEKL---KSY--NIKAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIV------- 267

Query:   441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
                +++ CY++L I+H +WIP+ G F DYI  PK + YQSLHT V GP G  LE+QIRT 
Sbjct:   268 --ESVRDCYTVLGIIHTMWIPVPGRFKDYIAMPKSNMYQSLHTTVIGPFGEPLEIQIRTF 325

Query:   501 KMHEYAEHGLAAHWLYKETG 520
             +MH  AE+G+AAHW YKE G
Sbjct:   326 EMHRTAEYGIAAHWRYKEGG 345
GO:0008728 "GTP diphosphokinase activity" evidence=ISS
GO:0015968 "stringent response" evidence=ISS
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3203 SPO_3203 "guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
COG0317701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 3e-48
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 1e-44
COG0317701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 2e-43
TIGR00691683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 3e-41
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 5e-40
pfam13328156 pfam13328, HD_4, HD domain 3e-38
TIGR00691683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 4e-38
PRK10872743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 2e-34
PRK11092702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 5e-31
PRK11092702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 2e-30
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 2e-28
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 3e-11
PRK10872743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 1e-09
cd0166860 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S 1e-08
pfam0282460 pfam02824, TGS, TGS domain 2e-07
cd0161660 cd01616, TGS, The TGS domain, named after the ThrR 2e-05
COG210468 COG2104, ThiS, Sulfur transfer protein involved in 3e-04
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  182 bits (463), Expect = 3e-48
 Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 9/129 (6%)

Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
           G++  +S R K +YSI+ KM++K +   ++YD RA+R++V           I  CY+ L 
Sbjct: 233 GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALG 283

Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
           IVH LW PI GEFDDYI NPKP+GYQSLHT V GP+G  +EVQIRT++MHE AE G+AAH
Sbjct: 284 IVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAH 343

Query: 514 WLYKETGNK 522
           W YKE G+ 
Sbjct: 344 WRYKEGGSA 352

Length = 701
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>gnl|CDD|217243 pfam02824, TGS, TGS domain Back     alignment and domain information
>gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>gnl|CDD|225015 COG2104, ThiS, Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 815
COG0317701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.95
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.94
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 99.93
COG2357231 PpGpp synthetase catalytic domain [General functio 99.93
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 99.92
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 99.89
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 99.87
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.49
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 98.9
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 98.79
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.73
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 98.24
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 98.16
PRK0177795 hypothetical protein; Validated 98.05
TIGR03276179 Phn-HD phosphonate degradation operons associated 97.87
PRK09602396 translation-associated GTPase; Reviewed 97.86
PRK0565966 sulfur carrier protein ThiS; Validated 97.8
cd0493876 TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma 97.76
PRK0694465 sulfur carrier protein ThiS; Provisional 97.61
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 97.57
PRK0643767 hypothetical protein; Provisional 97.56
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 97.49
PRK0744070 hypothetical protein; Provisional 97.48
COG210468 ThiS Sulfur transfer protein involved in thiamine 97.43
PRK0836470 sulfur carrier protein ThiS; Provisional 97.36
PRK0769667 sulfur carrier protein ThiS; Provisional 97.35
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 97.26
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 97.12
PRK0805366 sulfur carrier protein ThiS; Provisional 97.11
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 96.99
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 96.98
PF1445181 Ub-Mut7C: Mut7-C ubiquitin 96.94
PRK0648865 sulfur carrier protein ThiS; Validated 96.82
PRK0586365 sulfur carrier protein ThiS; Provisional 96.29
PRK0608384 sulfur carrier protein ThiS; Provisional 96.19
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 96.1
PLN0279982 Molybdopterin synthase sulfur carrier subunit 95.98
PF0259777 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam 95.31
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 95.24
COG291499 Uncharacterized protein conserved in bacteria [Fun 95.0
PTZ00258390 GTP-binding protein; Provisional 94.96
PRK147072710 hypothetical protein; Provisional 94.8
COG1163365 DRG Predicted GTPase [General function prediction 94.77
TIGR0168280 moaD molybdopterin converting factor, subunit 1, n 94.15
PLN02908 686 threonyl-tRNA synthetase 93.77
PRK12444 639 threonyl-tRNA synthetase; Reviewed 92.47
smart00471124 HDc Metal dependent phosphohydrolases with conserv 91.66
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 91.62
PRK09602396 translation-associated GTPase; Reviewed 90.17
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 90.16
TIGR0168788 moaD_arch MoaD family protein, archaeal. Members o 89.96
PRK091692316 hypothetical protein; Validated 89.13
PRK12703339 tRNA 2'-O-methylase; Reviewed 89.1
PRK1113081 moaD molybdopterin synthase small subunit; Provisi 88.96
TIGR0298859 YaaA_near_RecF S4 domain protein YaaA. This small 88.92
PF0147948 S4: S4 domain; InterPro: IPR002942 Ribosomes are t 87.34
PRK147072710 hypothetical protein; Provisional 87.11
PRK09601364 GTP-binding protein YchF; Reviewed 86.59
cd0176494 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel 85.09
PRK0565966 sulfur carrier protein ThiS; Validated 84.94
PF1445357 ThiS-like: ThiS-like ubiquitin 84.74
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 83.98
smart0036360 S4 S4 RNA-binding domain. 82.3
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 81.4
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 80.71
cd00077145 HDc Metal dependent phosphohydrolases with conserv 80.61
COG210468 ThiS Sulfur transfer protein involved in thiamine 80.19
COG1188100 Ribosome-associated heat shock protein implicated 80.05
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-124  Score=1081.99  Aligned_cols=454  Identities=37%  Similarity=0.591  Sum_probs=406.6

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHh
Q 003497           94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE  173 (815)
Q Consensus        94 ~~y~~~~~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~  173 (815)
                      ..|.+..+..+.+|+.||.++|.||+|+||+|||.||++||.||+++++     |.++++||||||++|||++|.++|++
T Consensus        17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~   91 (701)
T COG0317          17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE   91 (701)
T ss_pred             HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence            4555445556999999999999999999999999999999999999985     68999999999999999999999999


Q ss_pred             HhcHHHHHHHHHhhhchhhHHH-H-HHHHHHhhccCccc--------HHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhH
Q 003497          174 EFGDEVAKLVAGVSRLSYINQL-L-RRHRRINVNQGTLG--------HEELADRLHNMRTIYALPPAKARAVAQETLLIW  243 (815)
Q Consensus       174 ~FG~eVA~LV~gVTKls~i~~~-~-~~~~~~~~rk~~ls--------~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IY  243 (815)
                      .||++|++||+||||+..+... . ...+.+++++++++        ++||||||||||||.+++++||+++|+||++||
T Consensus        92 ~FG~eVa~LV~GvTkl~~i~~~~~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~riakETl~Iy  171 (701)
T COG0317          92 IFGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIY  171 (701)
T ss_pred             HHCHHHHHHHhhHHHhhhhhccCccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998321 1 12256778877554        568999999999999988999999999999999


Q ss_pred             hhhhhhhChHHHHHHHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhh
Q 003497          244 CSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL  323 (815)
Q Consensus       244 APLA~RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (815)
                      ||||||||||++|||||||||+||+|+.|+.|.+.|.+                                          
T Consensus       172 APLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e------------------------------------------  209 (701)
T COG0317         172 APLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE------------------------------------------  209 (701)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999999999999986                                          


Q ss_pred             hHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEee
Q 003497          324 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL  403 (815)
Q Consensus       324 ~~k~ll~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~  403 (815)
                                      +|.+|+.+++++.                      ..|++.|.+.         |++++|+||+
T Consensus       210 ----------------~r~~re~~i~~~~----------------------~~l~~~L~~~---------gi~a~v~gR~  242 (701)
T COG0317         210 ----------------KRLEREQYIENVV----------------------SELREELKAA---------GIKAEVSGRP  242 (701)
T ss_pred             ----------------HHHHHHHHHHHHH----------------------HHHHHHHHHc---------CCeEEEEcCC
Confidence                            4788999998876                      2355666663         8999999999


Q ss_pred             cChhHHHHHHHhcCCCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEE
Q 003497          404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT  483 (815)
Q Consensus       404 K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt  483 (815)
                      ||+||||+||++|+..|++|+|++||||||++         +.|||++||+||.+|+|+|+|||||||+||+||||||||
T Consensus       243 KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHT  313 (701)
T COG0317         243 KHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHT  313 (701)
T ss_pred             CcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEE
Confidence            99999999999999999999999999999996         889999999999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEEeechhhhHHHhhhhhhhhccccCCccccccccccchHHHhccCCCCCCCCCccccc-------ccc
Q 003497          484 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTD-------LFQ  556 (815)
Q Consensus       484 ~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~d-------vft  556 (815)
                      ||.||.|.++||||||+.||+.||+|+||||.||+++......-.+-++|.+|++...++.||++++|.|       +||
T Consensus       314 tv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~VyvfT  393 (701)
T COG0317         314 TVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVFT  393 (701)
T ss_pred             EEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEEC
Confidence            9999999999999999999999999999999999987322110123355678888878788999999988       479


Q ss_pred             cccc---ccCCCcee-------eecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCC--CcchhHHHHHHHhH
Q 003497          557 KYSS---LKMGHPVI-------RVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYARLYK  624 (815)
Q Consensus       557 pkg~---lp~G~tv~-------~~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~--~p~~dWL~~v~t~k  624 (815)
                      |||+   ||.|+|++       |.|||+|+||||     |||  +|||+|+|+|||+|||+|++  +|++||||||+|+|
T Consensus       394 PkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~k  466 (701)
T COG0317         394 PKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAGPSRDWLNFVVTSR  466 (701)
T ss_pred             CCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCCCCHHHHHHHhhHH
Confidence            9996   79997755       559999999999     999  99999999999999999998  49999999999999


Q ss_pred             Hhhh-hhcccCCCCchhhhhhhhccccCCeEeeecccCCCCC
Q 003497          625 KASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP  665 (815)
Q Consensus       625 ~~~~-~~~~~~~~g~~~~~l~~y~~~~dg~~h~~d~~~~~~p  665 (815)
                      |++| +-||  ...+.+.++++      |+--+...|+++-.
T Consensus       467 AR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~  500 (701)
T COG0317         467 ARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL  500 (701)
T ss_pred             HHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence            9999 6666  89999999999      99999999988765

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>PF14451 Ub-Mut7C: Mut7-C ubiquitin Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR01687 moaD_arch MoaD family protein, archaeal Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK11130 moaD molybdopterin synthase small subunit; Provisional Back     alignment and domain information
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA Back     alignment and domain information
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>cd01764 Urm1 Urm1-like ubuitin domain Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PF14453 ThiS-like: ThiS-like ubiquitin Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>smart00363 S4 S4 RNA-binding domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 1e-24
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 5e-23
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-08
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-05
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
           V+KA+ +A  AH  Q RK+G+PY+ H I    ILA L   +      TV  G LHDVV+D
Sbjct: 28  VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-----TVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
              +L +IE +FG +V  +V GV++L      S+  QL   HR++ +       +   +L
Sbjct: 83  TDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
           ADRLHNMRT+  L   K   +++ET+ I+  LA RLG+  +K ELEDL F  L    F K
Sbjct: 143 ADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYK 202
Query: 275 M 275
           +
Sbjct: 203 I 203
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 8e-52
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-47
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 9e-43
3nr1_A178 HD domain-containing protein 3; stringent response 1e-41
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 1e-40
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 2e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 8e-06
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 2e-05
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 2e-04
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 4e-04
2cu3_A64 Unknown function protein; thermus thermophilus HB8 9e-04
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  185 bits (471), Expect = 8e-52
 Identities = 78/217 (35%), Positives = 106/217 (48%), Gaps = 32/217 (14%)

Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
             V+KA+ +A  AH  Q RK+G+PY+ H I    ILA L          TV  G LHDVV
Sbjct: 26  AFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL-----HLDAVTVACGFLHDVV 80

Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRR-----------INV 204
           +D   +L +IE +FG +V  +V GV++L  +       QL   HR+           I V
Sbjct: 81  EDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILV 140

Query: 205 NQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
                   +LADRLHNMRT+  L   K   +++ET+ I+  LA RLG+  +K ELEDL F
Sbjct: 141 --------KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAF 192

Query: 265 AVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
             L    F K+   +      R R      I T + S
Sbjct: 193 RYLNETEFYKISHMMNE--KRREREALVDDIVTKIKS 227
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Length = 77 Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Length = 66 Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 815
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 2e-32
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 3e-26
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 4e-23
d1wxqa276 d.15.10.2 (A:320-395) GTP-binding protein PH0525 { 4e-07
d1rwsa_68 d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeo 2e-05
d1zud2165 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carr 3e-04
d1nyra259 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS 6e-04
d1tkea162 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS 8e-04
d2cu3a163 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 0.004
d1tygb_65 d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier 0.004
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  122 bits (307), Expect = 2e-32
 Identities = 66/175 (37%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
             V+KA+ +A  AH  Q RK+G+PY+ H I    ILA L   +      TV  G LHDVV
Sbjct: 22  AFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA-----VTVACGFLHDVV 76

Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLS-YINQLLRRHRRINVNQGTLGHEE------- 213
           +D   +L +IE +FG +V  +V GV++L     +        N  +  +   +       
Sbjct: 77  EDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILV 136

Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
            LADRLHNMRT+  L   K   +++ET+ I+  LA RLG+  +K ELEDL F  L
Sbjct: 137 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYL 191
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 68 Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Length = 65 Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Length = 63 Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query815
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 99.97
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 99.26
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 98.83
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 98.67
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 97.73
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 97.22
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 96.77
d1rwsa_68 Hypothetical protein PF1061 {Archaeon Pyrococcus f 96.76
d2hj1a177 Hypothetical protein HI0395 {Haemophilus influenza 96.73
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 96.25
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 95.41
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 94.8
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 94.16
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 91.1
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 89.25
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 87.47
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 85.32
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 85.17
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Stringent response-like protein RelA domain 2
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=0  Score=349.98  Aligned_cols=142  Identities=39%  Similarity=0.735  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCC
Q ss_conf             46877899999755467777778988655655435799999999983203888983279988305956899998823999
Q 003497          340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG  419 (815)
Q Consensus       340 ~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Kl~rk~~~  419 (815)
                      .+.+|+.++..+.                      ..+++.|..         .|+.++|.||+|++||||+||++++.+
T Consensus        14 ~r~~re~~i~~i~----------------------~~L~~~L~~---------~~i~~~I~gR~K~~ySI~~Km~~k~~~   62 (175)
T d1vj7a2          14 KRREREALVDDIV----------------------TKIKSYTTE---------QGLFGDVYGRPKHIYSIYRKMRDKKKR   62 (175)
T ss_dssp             THHHHHHHHHHHH----------------------HHHHHHHHT---------TTCCCEEEECCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHH---------CCCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf             9999999999999----------------------999999996---------498528999974489999999734877


Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEE
Q ss_conf             87434422489998289998898628899999999971287655654544359998897506999993899279999860
Q 003497          420 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT  499 (815)
Q Consensus       420 ~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~p~g~~vEIQIRT  499 (815)
                      |++|+|++|+||||.+         +.|||++||+||++|+|+|++|||||++||+||||||||+|.+|++ ++||||||
T Consensus        63 ~~~i~Di~aiRIIv~~---------~~dcy~~lg~ih~~~~p~~~r~kDyI~~PK~nGYqSLHt~v~~~~~-~~evqIRT  132 (175)
T d1vj7a2          63 FDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRT  132 (175)
T ss_dssp             CCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEE
T ss_pred             HHHCCCCCEEEEEEEE---------CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCC-CEEEEEEE
T ss_conf             0110354027899852---------0008999999985688324010255446797776247899970784-07999970


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             30266887555563302336986
Q 003497          500 QKMHEYAEHGLAAHWLYKETGNK  522 (815)
Q Consensus       500 ~~Mh~~AE~GiAAhw~YK~~~~~  522 (815)
                      ..||.|||+|+||||+||++...
T Consensus       133 ~~M~~~Ae~G~aahw~Yk~~~~~  155 (175)
T d1vj7a2         133 KEMHQVAEYGVAAHWAYKKGVRG  155 (175)
T ss_dssp             HHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             48898874608888720258988
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure