Citrus Sinensis ID: 003526

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---
MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPGFIATAKKEARKPVVRKKTY
ccccccccccEEEEEcEEEEEEEEEcccccEEEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEEEEEEEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEcccccEEEEcccccccEEEEEEEccccccccccccEEcccEEEEEEEccccccEEEEEEEEEEEEEEEcEEEEEEEcccccEEEEEEcccEEEEEEEcccEEEEEEccccEEEcccEEEEEcccccEEEEEEEEEEEEEEEEEEEccccccccccccEEEEEEccccccccEEEEEEcccccccccccEEEEEEEEcccccEEEEEccccccccEEEEEEccEEEEEEEccccccEEcEEEEEEcEEEEccccccccccEEEEEEcccccEEEcccccEEEEEEEcccccEEEcccccccEEEEEEccccEEEEEcccccccEEEEEEEEEEEEEEcccccccccEEEEEEccccEEccEEEcccccEEEcccccccEEEEEcccccccccccEEEEEccccEEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEcccccEEEcccccccEEEEEEEEccccccccEEcccccEEEEEEccccccccEEEEEEcccEEEEEEEEEccccccccccEEEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEEEccccccEEEEEEEEEEEEcccEEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHccccccccccc
cccccccccccEEEEEEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEccccEEEEEccccEEEEEEEEccccHccccEEcccEEEEEEccccEEEEEEEEEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEcccEEEEEEccccccEEEEEEccccccccccccccEcccEEEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccccEEccccEEEEEccccccEEEEEEEEEEEEEEEEEEccccccccccccEEEEEEEccccEEEcEEccccccccccccccEEEEEEEcccccEEEEEEcccccccccEEEEccccEEEEEccccccccEEEEEEcccEEEEcEEcccccccEEEEEEcccccEcEcccccEEEEEEEccccEEEEEccccccEEEEEEEcccEEEEEcccccEEEEEEEEEEEEEEEccccccccccEEEEEEcccccccccEEccccEEEEcccccccEEEEEcccccccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEEEccccEEEEcccccccEEEEEEEccccccccccccccccEEEEEEccccccccEEEEEEEccEEEEEEEEEEccccccccEEEEEEEcccccccEEEEEEccccEEEEccccccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHcccccccEEEccc
mvlpnmasiaDIKAISYDICGVVRTVGSGNKVKVALthgpdkvkpqvkqtdnngnfcfevppgeyrlsamaatpesssgilflppyadvvvkspllnIEFSQALVNVLGnvackercgplVTVTLMRLgqkhydgtekktvsltddsdqflfrdvlpgkyrlevkrtsreassmednwcweqsfigvdvgtndvkgvEFVQKGYWLNVISThdvdaymtqqdgshvplkvkkgsqhicvespgvhnlhfvnpcvffgspvlkmdtsnpspiylkgekyqlrghinvqsrspigvhelpenIIVDIlngdgsisnrttatltspandqtsyaVYGFSLwanlgdqltfvprdprgneekkilfyprqrqvsvtndgcqalipafsgrlglytegsvspplsgvniRIIAAEDSQIASLKKGHLaletstgadgsfiggplydditynveaskpgyylrqvgpnsfscqklsQISVRiyskddagepipsvllslsgddgyrnnsvswaggsfhfdnlfpgnfylrpllkeyafsppaqaielgsgesREVIFQATRVAYSATGTitllsgqpkdgvsvearseskgyyeetvtdtsgsyrlrglhpdtTYVIKVVKkdgfgstkieraspesvtvkvgsgdikgldflvfeqpektilsghvegnrIKELNSHLLVEIKsasdtskvesvislpmsnffqvkdlpkgkhllqlrsslpssthrfeSEIIEvdleknaqihvgplrysveenhhkqdltpapvfplIVGVSVIGLFISMPRLKDLYQaamgiptpgfiATAKkearkpvvrkkty
MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVAlthgpdkvkpqvkqtdnngNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQkhydgtekktvsltddsdqflfrdvlpgkyrlevkrtsreassmednwcWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTatltspandqTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKIlfyprqrqvsvtnDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIyskddagePIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGtitllsgqpkdgvsvearseskgyyeetvtdtsgsyrlrglhpdttyVIKVVKKDgfgstkieraspesvtvkvgsGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLrsslpssthRFESEIIevdleknaQIHVGPLRYSVEENHHKQdltpapvfPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPgfiatakkearkpvvrkkty
MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPGFIATAKKEARKPVVRKKTY
*******SIADIKAISYDICGVVRTVGSGNKVKVALTH***************GNFCFEVPPGEYRLS*********SGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEV**********EDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATL****NDQTSYAVYGFSLWANLGDQLTFVPRD*****EKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLS**********************VTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKI*******VTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIK*********SVISLPMSNFFQVKDLP****L***************SEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPGFIAT***************
***PNMASIADIKAISYDICGVVRTVGSGNKV*******************NNGNFCFEVPPGEYRLSAMAAT*ESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGD*S*****************SYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQI**********GEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSL*****RFESEIIEVDLEKNAQIHVGPLR**************APVFPLIVGVSVIGLFISMPRLKDLYQAAMG************************
MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKR*********DNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERA*********GSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPGFIATAK*************
*VLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPG*************V*****
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MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRLKDLYQAAMGIPTPGFIATAKKEARKPVVRKKTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query813 2.2.26 [Sep-21-2011]
P698491222 Nodal modulator 3 OS=Homo yes no 0.835 0.555 0.306 9e-84
Q5JPE71267 Nodal modulator 2 OS=Homo yes no 0.835 0.535 0.306 9e-84
Q151551222 Nodal modulator 1 OS=Homo yes no 0.835 0.555 0.305 1e-83
Q6GQT91214 Nodal modulator 1 OS=Mus yes no 0.453 0.303 0.332 5e-51
>sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3 PE=2 SV=2 Back     alignment and function desciption
 Score =  312 bits (799), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 238/776 (30%), Positives = 375/776 (48%), Gaps = 97/776 (12%)

Query: 2    VLPNMASIADIKAISYDICG---VVR---TVGSGNKVKVALTHGPDKVKPQVK-QTDNNG 54
            + PN   +ADI A  + +CG   ++R   TV   NK KV L+   DK K  V  +TD +G
Sbjct: 393  IAPNTPQLADIVATGFSVCGQISIIRFPDTVKQMNKYKVVLS-SQDKDKSLVTVETDAHG 451

Query: 55   NFCFEVPPGEYRLSAMAATPESSSGILFLP-PYADVVVKSPLLNIEFSQALVNVLGNVAC 113
            +FCF+  PG Y++  M    E+ +G+   P  +   V   P++++ F Q L +V G V+C
Sbjct: 452  SFCFKANPGTYKVQVMVPEAETRAGLTLKPQTFPLTVTDRPVMDVAFVQFLASVSGKVSC 511

Query: 114  KERCGPLVTVTLMRLGQKHYDGTEKKTVSLTD--DSDQFLFRDVLPGKYRLEVKRTSREA 171
             + CG L+ VTL  L ++     EK+++ L+   ++  F F +VLPGKY++ +       
Sbjct: 512  LDTCGDLL-VTLQSLSRQ----GEKRSLQLSGKVNAMTFTFDNVLPGKYKISI------- 559

Query: 172  SSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKV- 230
              M ++WCW+   + V+V  +DV  VEF Q GY L    +H +     Q       + + 
Sbjct: 560  --MHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLRCSLSHAITLEFYQDGNGRENVGIY 617

Query: 231  --KKGSQHICVESPGVHNLHFVNP--CVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHIN- 285
               KG    C+  PGV+    V P  C  F       DTS+PS + L   ++ + G I  
Sbjct: 618  NLSKGVNRFCLSKPGVYK---VTPRSCHRFEQAFYTYDTSSPSILTLTAIRHHVLGTITT 674

Query: 286  -------VQSRSPI------------GVHELP-ENIIVDILNGDGSISNRTTATLTSPAN 325
                   V  +S I             V EL  E  + +I   +     R          
Sbjct: 675  DKMMDVTVTIKSSIDSEPALVLGPLKSVQELRREQQLAEI---EARRQEREKNGNEEGEE 731

Query: 326  DQTSYAV------------YGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTN 373
              T   V            Y FS WA  G+++T  P        K++LFYP   +  V+ 
Sbjct: 732  RMTKPPVQEMVDELQGPFSYDFSYWARSGEKITVTP------SSKELLFYPPSMEAVVSG 785

Query: 374  DGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGS 433
            + C   +    G+ GL+ EG + P L GV I I  +E    + L      +   T   G+
Sbjct: 786  ESCPGKLIEIHGKAGLFLEGQIHPELEGVEIVI--SEKGASSPL------ITVFTDDKGA 837

Query: 434  FIGGPLYDDITYNVEASKPGYYLRQVGPN--SFSCQKLSQISVRIYSKDDAGEPIPSVLL 491
            +  GPL+ D+ Y V + K GY L  V      F    L+ +S  I ++DD  +P+P VLL
Sbjct: 838  YSVGPLHSDLEYTVTSQKEGYVLTAVEGTIGDFKAYALAGVSFEIKAEDD--QPLPGVLL 895

Query: 492  SLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIF 551
            SLSG   +R+N ++   G   F NL PG +Y +P++KE+ F P +Q IE+  G++ ++  
Sbjct: 896  SLSGGL-FRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQNLKITI 954

Query: 552  QATRVAYSATGTITLLSGQPKDGVSVEA--RSESKGYYEETVTDTSGSYRLRGLHPDTTY 609
               R AYS  GT++ L+G+P+ GV++EA  +++   Y E+TVTD  G +RLRGL P   Y
Sbjct: 955  TGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGLLPGCVY 1014

Query: 610  VIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKEL 669
             +++  +   G+  IERA P    ++VG+ DI  ++ +VF Q  +  LSG+V  +   E 
Sbjct: 1015 HVQLKAE---GNDHIERALPHHRVIEVGNNDIDDVNIIVFRQINQFDLSGNVITS--SEY 1069

Query: 670  NSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG--KHLLQLRSSLPSSTHRF 723
               L V++  + +       +SL  S FF    L +    +++ L S+LP S + +
Sbjct: 1070 LPTLWVKLYKSENLDNPIQTVSLGQSLFFHFPPLLRDGENYVVLLDSTLPRSQYDY 1125
May antagonize Nodal signaling.
Homo sapiens (taxid: 9606)
>sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 Back     alignment and function description
>sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5 Back     alignment and function description
>sp|Q6GQT9|NOMO1_MOUSE Nodal modulator 1 OS=Mus musculus GN=Nomo1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
225437598 1199 PREDICTED: nodal modulator 1 [Vitis vini 0.997 0.676 0.761 0.0
255548409 1198 carboxypeptidase regulatory region-conta 0.996 0.676 0.744 0.0
356572803 1195 PREDICTED: nodal modulator 1-like [Glyci 0.991 0.674 0.683 0.0
356503940 1195 PREDICTED: nodal modulator 1-like [Glyci 0.991 0.674 0.676 0.0
357511397 1288 Nodal modulator [Medicago truncatula] gi 0.991 0.625 0.670 0.0
449436411 1199 PREDICTED: nodal modulator 2-like [Cucum 0.995 0.674 0.669 0.0
297821142 1225 hypothetical protein ARALYDRAFT_486740 [ 0.987 0.655 0.643 0.0
15228737 1227 carbohydrate-binding-like fold-containin 0.987 0.654 0.642 0.0
357128074 1203 PREDICTED: nodal modulator 1-like [Brach 0.992 0.670 0.555 0.0
125525541 1193 hypothetical protein OsI_01543 [Oryza sa 0.991 0.675 0.563 0.0
>gi|225437598|ref|XP_002271147.1| PREDICTED: nodal modulator 1 [Vitis vinifera] gi|297743995|emb|CBI36965.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1271 bits (3290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/813 (76%), Positives = 699/813 (85%), Gaps = 2/813 (0%)

Query: 1    MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEV 60
            +VLPNMASI DI+A SYD+CGVVR V +G K KVALTHGP+ VKPQVKQTD  GNFCFEV
Sbjct: 389  LVLPNMASIEDIRAASYDVCGVVRMVSAGYKAKVALTHGPENVKPQVKQTDETGNFCFEV 448

Query: 61   PPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPL 120
            PPGEYRLSA+AATPES+ G+LFLP Y DV VKSPLL +EFSQALVN+ G V CKE+CGP 
Sbjct: 449  PPGEYRLSALAATPESAPGLLFLPSYVDVAVKSPLLKVEFSQALVNIHGAVVCKEKCGPS 508

Query: 121  VTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCW 180
            V+VTL+RL  KH +  E+KTVSLTD+S +FLF  V PGKYRLEVK  S  A S ED+WCW
Sbjct: 509  VSVTLVRLAGKHNE--ERKTVSLTDESSEFLFSSVFPGKYRLEVKHLSPGAVSGEDSWCW 566

Query: 181  EQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVE 240
            EQSFI VDVG + +KG+ FVQKGYW+N++S+HDVDAYMTQ DGS V LK+KKG QHICVE
Sbjct: 567  EQSFIDVDVGADGIKGIVFVQKGYWINIVSSHDVDAYMTQPDGSSVNLKIKKGLQHICVE 626

Query: 241  SPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPEN 300
            SPGVH LHFV+ C+FFGS  +K+DTS+  PI+LKG+KY L+GHI+VQS S  G +ELPE+
Sbjct: 627  SPGVHELHFVDSCIFFGSSSMKIDTSDTLPIHLKGDKYLLKGHIHVQSSSLSGEYELPES 686

Query: 301  IIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKI 360
             IV++LN DG++   + A L S  NDQTS +VY +S+WANLG++LTFVP D R N EKKI
Sbjct: 687  FIVEVLNSDGTVFGGSPARLISSENDQTSASVYEYSVWANLGEKLTFVPSDARNNGEKKI 746

Query: 361  LFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKG 420
            LFYPRQ+ V VTNDGCQA IP FSGRLGLY EGSVSPPLSGVNIRIIAA DS  A  KKG
Sbjct: 747  LFYPRQQHVLVTNDGCQASIPPFSGRLGLYVEGSVSPPLSGVNIRIIAAGDSPNALFKKG 806

Query: 421  HLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKD 480
             LAL T+TG DG F+GGPLYDDITY++EASK GY+L+QVGPNSFSCQKLSQISV IYSKD
Sbjct: 807  DLALGTTTGTDGFFVGGPLYDDITYSIEASKTGYHLKQVGPNSFSCQKLSQISVHIYSKD 866

Query: 481  DAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIE 540
            DA EPIPSVLLSLSGDDGYRNNSVS  GG F FD+LFPG+FYLRPLLKEYAFSPPAQAIE
Sbjct: 867  DAEEPIPSVLLSLSGDDGYRNNSVSGTGGVFLFDHLFPGSFYLRPLLKEYAFSPPAQAIE 926

Query: 541  LGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRL 600
            LGSGESREV+FQATRVAYSATGT+TLLSGQPK+GVSVEARS+SKGYYEETVTD+SGSYRL
Sbjct: 927  LGSGESREVVFQATRVAYSATGTVTLLSGQPKEGVSVEARSDSKGYYEETVTDSSGSYRL 986

Query: 601  RGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGH 660
            RGL PDTTY+IKVVKKD   S++IERASPESV+VKVGS DIK LDFLVFEQPE TILS H
Sbjct: 987  RGLLPDTTYLIKVVKKDDLSSSRIERASPESVSVKVGSEDIKALDFLVFEQPEMTILSCH 1046

Query: 661  VEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSST 720
            VEG+RI+EL+SHL VEIKSASD SK+ESV  LP+SNFFQVKDLPKGKHLLQL+S  PS+T
Sbjct: 1047 VEGSRIEELHSHLRVEIKSASDPSKIESVFPLPLSNFFQVKDLPKGKHLLQLQSGFPSTT 1106

Query: 721  HRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPRL 780
            H+FESEIIEVDLEKN QIHVGPLR+ VEE+HHKQ+LTPAPVFPLIVGVSVI LFISMPRL
Sbjct: 1107 HKFESEIIEVDLEKNTQIHVGPLRFKVEEDHHKQELTPAPVFPLIVGVSVIALFISMPRL 1166

Query: 781  KDLYQAAMGIPTPGFIATAKKEARKPVVRKKTY 813
            KDLYQ  MG+   G  +TAKKE RKP++RKKTY
Sbjct: 1167 KDLYQTTMGMSMSGATSTAKKEVRKPILRKKTY 1199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548409|ref|XP_002515261.1| carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis] gi|223545741|gb|EEF47245.1| carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356572803|ref|XP_003554555.1| PREDICTED: nodal modulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356503940|ref|XP_003520757.1| PREDICTED: nodal modulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357511397|ref|XP_003625987.1| Nodal modulator [Medicago truncatula] gi|355501002|gb|AES82205.1| Nodal modulator [Medicago truncatula] Back     alignment and taxonomy information
>gi|449436411|ref|XP_004135986.1| PREDICTED: nodal modulator 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297821142|ref|XP_002878454.1| hypothetical protein ARALYDRAFT_486740 [Arabidopsis lyrata subsp. lyrata] gi|297324292|gb|EFH54713.1| hypothetical protein ARALYDRAFT_486740 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228737|ref|NP_191795.1| carbohydrate-binding-like fold-containing protein [Arabidopsis thaliana] gi|7340707|emb|CAB82950.1| putative protein [Arabidopsis thaliana] gi|332646822|gb|AEE80343.1| carbohydrate-binding-like fold-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357128074|ref|XP_003565701.1| PREDICTED: nodal modulator 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|125525541|gb|EAY73655.1| hypothetical protein OsI_01543 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
TAIR|locus:20960491227 AT3G62360 [Arabidopsis thalian 0.986 0.653 0.642 9e-283
UNIPROTKB|F1Q3421144 NOMO2 "Uncharacterized protein 0.559 0.397 0.313 2.9e-82
UNIPROTKB|F1NZW11215 PM5 "Uncharacterized protein" 0.950 0.636 0.286 3e-82
UNIPROTKB|F1PB461178 NOMO2 "Uncharacterized protein 0.559 0.386 0.313 3.4e-82
RGD|13052401214 Nomo1 "nodal modulator 1" [Rat 0.562 0.376 0.306 3.6e-82
MGI|MGI:23858501214 Nomo1 "nodal modulator 1" [Mus 0.562 0.376 0.306 2.7e-80
UNIPROTKB|P698491222 NOMO3 "Nodal modulator 3" [Hom 0.949 0.631 0.289 2.8e-77
UNIPROTKB|Q5JPE71267 NOMO2 "Nodal modulator 2" [Hom 0.949 0.609 0.289 3.3e-77
UNIPROTKB|Q151551222 NOMO1 "Nodal modulator 1" [Hom 0.949 0.631 0.288 3.6e-77
ZFIN|ZDB-GENE-040826-31217 nomo "nodal modulator" [Danio 0.948 0.633 0.287 3.7e-77
TAIR|locus:2096049 AT3G62360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2717 (961.5 bits), Expect = 9.0e-283, P = 9.0e-283
 Identities = 523/814 (64%), Positives = 641/814 (78%)

Query:     1 MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEV 60
             MVLPNMAS+ DI A+SYDICGVVR  GS +K KVALTHGP  VKPQ+K TD  G FCFEV
Sbjct:   425 MVLPNMASLPDINAVSYDICGVVRMFGSRHKAKVALTHGPTNVKPQMKLTDETGAFCFEV 484

Query:    61 PPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPL 120
             PPGEYRLSA+AATP+ +S +LFLP Y DV VKSPLLNIEFSQA VNV G+V CKE+CGP 
Sbjct:   485 PPGEYRLSALAATPKGASELLFLPAYVDVAVKSPLLNIEFSQARVNVHGSVTCKEKCGPS 544

Query:   121 VTVTLM-RLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWC 179
             V+V L+   G +     +KKTV LTD+S QFLF D+LPGKYR+EVK  S EA+S ED+WC
Sbjct:   545 VSVVLVGAAGDR-----DKKTVVLTDESSQFLFSDILPGKYRVEVKSISPEAASDEDSWC 599

Query:   180 WEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICV 239
             W++S I V+VGT D+KG+EFVQKGYW+N+ISTH+VDA +   DGS   LK+KKGSQ IC+
Sbjct:   600 WDRSSIDVNVGTEDIKGIEFVQKGYWINIISTHEVDARIAHPDGSPTSLKIKKGSQKICI 659

Query:   240 ESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPE 299
             ESPG H L   + C+ FGS  +K+D SNP PI+LK EKY L+G INV+S S I   EL E
Sbjct:   660 ESPGGHELQLSDSCMSFGSNSIKIDVSNPQPIHLKAEKYLLKGLINVESSSTIE-SELQE 718

Query:   300 NIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKK 359
             N IVDI +  G++ N   A L S  +      VY +  WA+LG++++FVP+D RGN EKK
Sbjct:   719 NFIVDIQDKKGNVINTIAAKLASDGS-----GVYEYYTWASLGEKISFVPQDSRGNVEKK 773

Query:   360 ILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKK 419
             +LFYP++    V+ DGCQA +  F+GRLGLY +GSVSPPL GVNI+I AA+DS I+SLKK
Sbjct:   774 MLFYPKEIHAVVSKDGCQASVSPFTGRLGLYIQGSVSPPLPGVNIKIFAAKDSLISSLKK 833

Query:   420 GHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSK 479
             G +A+ETST + GSF+ GPLYDDI Y  EASKPGY+++++GP SFSCQKL QISVR+ SK
Sbjct:   834 GEIAIETSTLSAGSFVAGPLYDDIPYATEASKPGYHIKRLGPYSFSCQKLGQISVRVNSK 893

Query:   480 DDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAI 539
             D+A   IP +LLSLSGD GYRNNS+S AGG F FD+LFPGNFYLRPLLKEY+F P   AI
Sbjct:   894 DNAETSIPPLLLSLSGDHGYRNNSISGAGGLFVFDSLFPGNFYLRPLLKEYSFKPSTLAI 953

Query:   540 ELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYR 599
             EL SGES E +F+ATRVAYSA G + LLSGQP++GV++EARS+SKGYYEET +D +G+YR
Sbjct:   954 ELNSGESSEAVFEATRVAYSAMGRVALLSGQPQEGVAIEARSDSKGYYEETTSDINGNYR 1013

Query:   600 LRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSG 659
             LRGLHPDT YVIKV KK G  + +IERASPESV++++G  DI GLDFLVFEQPE TIL+ 
Sbjct:  1014 LRGLHPDTAYVIKVSKKIGSANNQIERASPESVSLQIGYEDINGLDFLVFEQPETTILTC 1073

Query:   660 HVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSS 719
             HVEG + ++LNS+LLVEIKSA D SK+E+V  LP+SNFFQVK LPKGKHL+QL+SS P  
Sbjct:  1074 HVEGKQNEDLNSNLLVEIKSAIDKSKIENVFPLPLSNFFQVKGLPKGKHLVQLKSSRPLI 1133

Query:   720 THRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPR 779
             +H+ ESEIIEVD E NAQIH+GPLRYS+  +H  Q++TPA + PL++GVS I LF+S+PR
Sbjct:  1134 SHKVESEIIEVDFETNAQIHIGPLRYSIVADHQSQEVTPAAILPLVIGVSAIALFLSIPR 1193

Query:   780 LKDLYQAAMGIPTPGFIATAKKEARKPVVRKKTY 813
             LKD+YQA +GI +PGF  +AK+E RK V RKKT+
Sbjct:  1194 LKDIYQATVGISSPGFTTSAKREPRKAVARKKTF 1227
GO:0005576 "extracellular region" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
UNIPROTKB|F1Q342 NOMO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZW1 PM5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB46 NOMO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1305240 Nomo1 "nodal modulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2385850 Nomo1 "nodal modulator 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P69849 NOMO3 "Nodal modulator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JPE7 NOMO2 "Nodal modulator 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15155 NOMO1 "Nodal modulator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040826-3 nomo "nodal modulator" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028133001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1199 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 1e-08
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information 
 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 561 TGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 620
           +GT+T  SG P  G +V   +   G    T TD  G + L GL P T  +   V   G+ 
Sbjct: 3   SGTVTDASGAPIPGATVTLTNADTGTVRGTTTDADGRFSLTGLPPGTYTL--TVSAPGYK 60

Query: 621 STKIERASPESVTVKVGSGDIKGLDF 646
           S  ++        V V +G    LD 
Sbjct: 61  SQTVK-------DVTVTAGQTTTLDI 79

Length = 81

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 813
KOG19481165 consensus Metalloproteinase-related collagenase pM 100.0
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 100.0
COG49321531 Predicted outer membrane protein [Cell envelope bi 99.44
COG49321531 Predicted outer membrane protein [Cell envelope bi 99.35
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.9
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.89
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.2
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 98.11
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.87
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.86
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.85
PF1371588 DUF4480: Domain of unknown function (DUF4480) 97.77
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 97.66
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.63
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 97.62
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 97.58
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.58
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.54
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.5
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.49
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.49
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.36
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 97.24
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.19
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 97.17
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.11
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 97.04
PRK15036137 hydroxyisourate hydrolase; Provisional 97.01
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.87
PRK15036137 hydroxyisourate hydrolase; Provisional 96.83
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 96.77
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 96.76
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 96.66
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 96.64
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 96.39
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 96.35
KOG2649500 consensus Zinc carboxypeptidase [General function 96.26
PF00576112 Transthyretin: HIUase/Transthyretin family; InterP 96.24
COG1470513 Predicted membrane protein [Function unknown] 96.12
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 96.0
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 95.95
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 95.94
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 95.79
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 95.73
KOG2649500 consensus Zinc carboxypeptidase [General function 95.68
PF1197497 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I 95.49
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 95.19
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 95.01
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 94.96
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 94.88
smart00095121 TR_THY Transthyretin. 94.84
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 94.83
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 94.81
cd05821121 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa 94.77
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 94.74
cd05469113 Transthyretin_like Transthyretin_like. This domain 94.63
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 94.59
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 94.46
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 94.45
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 94.35
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 94.31
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 94.24
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 94.23
PF10670215 DUF4198: Domain of unknown function (DUF4198) 94.22
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 94.14
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 93.99
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 93.98
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 93.97
PF10670215 DUF4198: Domain of unknown function (DUF4198) 93.91
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 93.84
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 93.79
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 93.78
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 93.75
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 93.7
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 93.69
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 93.66
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 93.65
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 93.56
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 93.54
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 93.51
TIGR00864 2740 PCC polycystin cation channel protein. Note: this 93.16
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 93.05
PF0106080 DUF290: Transthyretin-like family; InterPro: IPR00 92.77
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 92.06
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 92.05
PF02369100 Big_1: Bacterial Ig-like domain (group 1); InterPr 91.31
PF02369100 Big_1: Bacterial Ig-like domain (group 1); InterPr 91.11
COG2351124 Transthyretin-like protein [General function predi 90.81
PF1197497 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I 90.75
TIGR00864 2740 PCC polycystin cation channel protein. Note: this 90.38
cd05469113 Transthyretin_like Transthyretin_like. This domain 90.02
PF00576112 Transthyretin: HIUase/Transthyretin family; InterP 89.69
COG2373 1621 Large extracellular alpha-helical protein [General 89.14
cd05821121 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa 89.09
cd03457188 intradiol_dioxygenase_like Intradiol dioxygenase s 88.92
PF0119097 Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte 87.81
smart0063492 BID_1 Bacterial Ig-like domain (group 1). 87.45
KOG3006132 consensus Transthyretin and related proteins [Lipi 87.19
cd03457188 intradiol_dioxygenase_like Intradiol dioxygenase s 86.3
COG2373 1621 Large extracellular alpha-helical protein [General 86.08
PF0106080 DUF290: Transthyretin-like family; InterPro: IPR00 86.04
smart00095121 TR_THY Transthyretin. 86.02
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 85.09
COG2351124 Transthyretin-like protein [General function predi 83.76
PRK15310895 fimbrial outer membrane usher protein TcfC; Provis 81.37
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-148  Score=1250.53  Aligned_cols=765  Identities=36%  Similarity=0.610  Sum_probs=698.4

Q ss_pred             CCCCCCCccceeEEeeEEEEEEEEEccCCceEEEEEecCCCcccceeeeeCCC-CcEEEEecCcceEEEEeecCCCCCCc
Q 003526            1 MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSG   79 (813)
Q Consensus         1 ~v~p~~~~l~di~~~~~~vCG~V~~~~~~~~~~v~lt~g~~~~k~~t~~t~~~-G~Fcf~l~pG~Y~l~v~~~~~e~~~G   79 (813)
                      ||.|||++||||+|++|+|||+|++..  ++..+.||+..++.|.+...++++ |+|||++|||.|+|+++.+++++++|
T Consensus       380 kv~pntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aag  457 (1165)
T KOG1948|consen  380 KVKPNTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAG  457 (1165)
T ss_pred             EecCCccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccc
Confidence            689999999999999999999998754  567788876666677766666655 99999999999999999999999999


Q ss_pred             eEEeCceEEEEe-CCCccceEEEEEEeEEEEEEEeccCCCCceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCc
Q 003526           80 ILFLPPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPG  158 (813)
Q Consensus        80 l~F~P~~~~v~V-~~p~~di~Fsq~~~sv~G~V~c~~~c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG  158 (813)
                      |+|.|.+++++| +.|++||.|+|||++|+|+|+|++.|+ .++|+|+....+   +....+++.+++.++|.|+|||||
T Consensus       458 l~l~P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPG  533 (1165)
T KOG1948|consen  458 LLLTPRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPG  533 (1165)
T ss_pred             cEeeeeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCc
Confidence            999999999999 679999999999999999999999999 789999988332   224566677899999999999999


Q ss_pred             cEEEEEEeeccccccCCCCeEEEeeEEEEEeecCcccceeEEEeceEEEEEeccceeeeEeecCCCeee---eEecccce
Q 003526          159 KYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQ  235 (813)
Q Consensus       159 ~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~~~~~~f~q~Gy~v~v~ssh~~~~~~~~~~~~~~~---~~l~kG~~  235 (813)
                      +|++++.        ||++|||++++++++|.++|+.+++|+|+|||++|.+||+++++|+|++|.+.+   ++|.||+|
T Consensus       534 kY~~~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn  605 (1165)
T KOG1948|consen  534 KYSARID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVN  605 (1165)
T ss_pred             ceEEEec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcce
Confidence            9999998        599999999999999999999999999999999999999999999999998876   88999999


Q ss_pred             eEeecCCeeeEEEeccCeeeeCCceEEEeCCCCceeEEEeEEeEEeEEEEEeccCCCccccCCcceEEEEecCCCceeec
Q 003526          236 HICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNR  315 (813)
Q Consensus       236 ~~c~~~~G~Y~~~l~~sC~~f~~~~~~~~t~~~~~i~l~~~~~~v~G~i~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~  315 (813)
                      +||+++||.|.+.+ .+||.|+.++.+..+..+.+.+++++..++.|+|.++..+... ...++++.+++.+.+++.++.
T Consensus       606 ~iCv~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~  683 (1165)
T KOG1948|consen  606 SICVPKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITR  683 (1165)
T ss_pred             EEEccCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCc
Confidence            99999999999997 9999999999999999888999999999999999988865542 355678888888888877763


Q ss_pred             ccccccCCCCCCCCceEEEEEEeccCCCeEEEEecCCCCCCceeEEEeecEEEEEEcCCCcccccceEEeeeccEEEeee
Q 003526          316 TTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSV  395 (813)
Q Consensus       316 ~~~~~~~~~~~~~~~~~Y~f~~~~~~Ge~~~i~P~~~~~~~~~~~lf~P~~~~v~V~~~~c~~~~~~f~~~~G~~i~G~V  395 (813)
                      +   ....+.| +|.+.|+|.+||++||+|+|+|.+      +.+||+|.+++++|..+ |+.+.++|.+.+|++|+|+|
T Consensus       684 ~---a~~~avD-~G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi  752 (1165)
T KOG1948|consen  684 E---AQVPAVD-NGRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSI  752 (1165)
T ss_pred             c---ccccccc-CCcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEccee
Confidence            2   2232333 378999999999999999999988      79999999999999987 99999999999999999999


Q ss_pred             eCCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEeCCCeeeeecC--CcceeeeeeceEE
Q 003526          396 SPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQIS  473 (813)
Q Consensus       396 ~~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy~~~~~~--~~~f~~~~l~~I~  473 (813)
                      .|+|+||+|+++.++++        +..+++.|+.+|.|.+|||..+..|.++|+||||+|++.+  +++|.+.+||+|+
T Consensus       753 ~Palega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vs  824 (1165)
T KOG1948|consen  753 KPALEGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVS  824 (1165)
T ss_pred             ccCCCCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEE
Confidence            99999999999988765        7889999999999999999999999999999999999997  4899999999999


Q ss_pred             EEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEE
Q 003526          474 VRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQA  553 (813)
Q Consensus       474 g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~  553 (813)
                      +.|+|++  ++||+||++||+|+..||+|.+|+++|.+.|.+|.||+||++|||+||.|.|++++|+|++|++..+.|.+
T Consensus       825 v~vkdea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~g  902 (1165)
T KOG1948|consen  825 VKVKDEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKG  902 (1165)
T ss_pred             EEEeccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEE
Confidence            9999986  79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEEEEEEEcCCCCccCccEEEEEeCC-CceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceE
Q 003526          554 TRVAYSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESV  632 (813)
Q Consensus       554 ~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~-~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~  632 (813)
                      .|++||++|+|+.++|+|..||.++|++++ ..+.++++||+||+||||||+|||.|.|.+++..  ++++|||++|+++
T Consensus       903 kRvAySayGtvssLsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~  980 (1165)
T KOG1948|consen  903 KRVAYSAYGTVSSLSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSF  980 (1165)
T ss_pred             EEEEEEeeeehhhccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceE
Confidence            999999999999999999999999999987 5689999999999999999999999999999864  4788999999999


Q ss_pred             EEEecCccccCceEEEeecCceEEEEEEEEccccccccccEEEEE-EecCCCCceEEEEeeCCCceEEeecCCC--ceEE
Q 003526          633 TVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEI-KSASDTSKVESVISLPMSNFFQVKDLPK--GKHL  709 (813)
Q Consensus       633 ~V~V~~~dv~gv~f~~~~~~~~~~vsg~V~~s~~~~~~~~l~v~l-~~~~~~~~v~~~~~l~~~~~F~~~~lp~--G~Y~  709 (813)
                      +|+|+.+||+|+||++|+|++.+||+|+|.++. .++++.++|.+ ++.++++++.+ +..+. .+|.||+||+  ++|.
T Consensus       981 tv~vgneDv~glnf~af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~s-v~~gq-l~~ffp~l~~dg~~yv 1057 (1165)
T KOG1948|consen  981 TVSVGNEDVKGLNFMAFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVAS-VVAGQ-LLHFFPNLPRDGVEYV 1057 (1165)
T ss_pred             EEEecccccCCceEEEEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceE-Eeccc-eeeeccccCCCCceEE
Confidence            999999999999999999999999999999887 56667777766 77778898888 44443 7899999997  4999


Q ss_pred             EEEEeeCCCCceeeeeeeEEEEEEecc-eEEEeeeeEeeeeccccccCCCCcchHhHHHHHHHHHH---------HhhHH
Q 003526          710 LQLRSSLPSSTHRFESEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLF---------ISMPR  779 (813)
Q Consensus       710 v~l~s~l~~~~~~y~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~  779 (813)
                      |+|+|+++.++|+|.  ++  .|.|.. .+|+ .|.|.|++|..|+|++|++++||+|+++|+++|         +++|+
T Consensus      1058 V~l~Stlp~~~y~yk--lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lvalaffnqd~~~~lLsi~s 1132 (1165)
T KOG1948|consen 1058 VRLESTLPPQAYAYK--LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVALAFFNQDRVLELLSIPS 1132 (1165)
T ss_pred             EEEeccCCchheeee--cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHHHHhchhhhhhhhcchh
Confidence            999999999999995  44  787776 8888 899999999999999999999999999999987         46888


Q ss_pred             HHHHHHhhcCCCCCCcccccccccCCccccccc
Q 003526          780 LKDLYQAAMGIPTPGFIATAKKEARKPVVRKKT  812 (813)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  812 (813)
                      ++|++++..+.++.+.+-..||||||...||||
T Consensus      1133 ~ld~vrat~a~~sdn~t~~rk~ep~k~~~~~kt 1165 (1165)
T KOG1948|consen 1133 FLDWVRATFAPTSDNHTRKRKREPRKAVARKKT 1165 (1165)
T ss_pred             HHHHHHhhccccCCCCChhhhcchhhhhhhccC
Confidence            899999999999999988889999999999986

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only] Back     alignment and domain information
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only] Back     alignment and domain information
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [] Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>smart00095 TR_THY Transthyretin Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>cd05469 Transthyretin_like Transthyretin_like Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>TIGR00864 PCC polycystin cation channel protein Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 [] Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins Back     alignment and domain information
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins Back     alignment and domain information
>COG2351 Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [] Back     alignment and domain information
>TIGR00864 PCC polycystin cation channel protein Back     alignment and domain information
>cd05469 Transthyretin_like Transthyretin_like Back     alignment and domain information
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup Back     alignment and domain information
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>smart00634 BID_1 Bacterial Ig-like domain (group 1) Back     alignment and domain information
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 [] Back     alignment and domain information
>smart00095 TR_THY Transthyretin Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>COG2351 Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3k2m_C101 Monobody HA4; engineered binding protein, antibody 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 113/692 (16%), Positives = 204/692 (29%), Gaps = 221/692 (31%)

Query: 149 QFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNV 208
           Q+ ++D+L                       +E +F+  +    D K V+ + K    ++
Sbjct: 15  QYQYKDILS---------------------VFEDAFVD-NF---DCKDVQDMPK----SI 45

Query: 209 ISTHDVDAYMTQQDGSHVPLKVKKGSQHI--CVESPGVHNLH-FVNPCV-----FFGSPV 260
           +S  ++D  +  +D          G+  +   + S     +  FV   +     F  SP 
Sbjct: 46  LSKEEIDHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP- 97

Query: 261 LKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGV------HEL--------PENIIVDIL 306
           +K +   PS +     + + R + + Q  +   V       +L        P   ++  +
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--I 155

Query: 307 NGDGSISNRTTATLTSPA-NDQTSYAVYGFSL-WANLGD-----------QLTFVPRDPR 353
           +G    S +T   +               F + W NL +           Q      DP 
Sbjct: 156 DGVLG-SGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 354 GNEEKKILFYPRQRQVSVTN---------DGCQAL-----------IPAFSG--RLGLYT 391
                      + R  S+                L             AF+   ++ L T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLT 271

Query: 392 --EGSVSPPLSGVNIRIIAAED--------------SQIASLKKGHLALETSTGA--DGS 433
                V+  LS      I+ +                +    +   L  E  T      S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 434 FIGGPLYDDI-TYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLS 492
            I   + D + T++          + V      C KL+ I             I S L  
Sbjct: 332 IIAESIRDGLATWD--------NWKHVN-----CDKLTTI-------------IESSLNV 365

Query: 493 LSGDDGYRNNSVSWAGGSFHFDNL--FPGNFYLRPLLKEYAFSPPAQAIEL--GSGESRE 548
           L   + YR            FD L  FP + ++           P   + L        +
Sbjct: 366 LEPAE-YRK----------MFDRLSVFPPSAHI-----------PTILLSLIWFDVIKSD 403

Query: 549 VIFQATR-VAYSATGTITLLSGQPKD------GVSVEARSESKGYYE--ETVTDTSGSYR 599
           V+    +   YS      L+  QPK+       + +E + + +  Y    ++ D    Y 
Sbjct: 404 VMVVVNKLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYN 454

Query: 600 L-RGLHPDTTYVIKVVKKDG-FGS------TKIERASPESVTVKVGSGDIKGLDFLVFEQ 651
           + +    D      +   D  F S        IE     ++   V       LDF   EQ
Sbjct: 455 IPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRMV------FLDFRFLEQ 505

Query: 652 PEKTILSGHVEGNRIKELNSHLLVEIKS-----ASDTSKVESVISLPMSNFFQV-KDLPK 705
             K              LN   L ++K        +  K E +++  +    ++ ++L  
Sbjct: 506 --KIRHDSTAWNASGSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 706 GKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQ 737
            K+   LR +L       E E I  +  K  Q
Sbjct: 562 SKYTDLLRIAL-----MAEDEAIFEEAHKQVQ 588
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query813
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.44
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 98.31
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 97.9
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 97.9
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.88
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 97.88
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 97.82
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.46
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 96.44
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 96.07
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 95.9
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 95.76
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 95.71
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 95.64
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 95.57
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 95.56
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 95.22
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 95.1
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 94.71
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 92.75
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 91.84
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 91.35
d1cwva296 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 90.97
d1f86a_115 Transthyretin (synonym: prealbumin) {Human (Homo s 85.36
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 82.81
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=98.44  E-value=5.3e-07  Score=64.31  Aligned_cols=78  Identities=18%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             EEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             08999991499999856149999848654033685089319967458810999974034200697038994488638999
Q 003526          471 QISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVI  550 (813)
Q Consensus       471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~  550 (813)
                      +|+|.|.|.+ +|+||+||.|.+.+..   ..+.||++|.|.+ .|+||.|.|.+.+.+|.  +..+.|.|.+++...++
T Consensus         1 GI~G~V~d~~-tg~pi~~a~V~v~~~~---~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~~~~~~~   73 (79)
T d1h8la1           1 GIWGFVLDAT-DGRGILNATISVADIN---HPVTTYKDGDYWR-LLVQGTYKVTASARGYD--PVTKTVEVDSKGGVQVN   73 (79)
T ss_dssp             EEEEEEEETT-TCSBCTTCEEEETTEE---EEEECCTTSEEEE-CCCSEEEEEEEECTTBC--CEEEEEEECSSCEEECC
T ss_pred             CCEEEEEECC-CCCCCCCEEEEEECCC---CCEEECCCCCEEE-EEECCCEEEEEEEEEEC--CEEEEEEECCCCEEEEE
T ss_conf             9599999799-9998487299981750---1179568787999-96066189999997766--39999999789859999


Q ss_pred             EEEEE
Q ss_conf             99877
Q 003526          551 FQATR  555 (813)
Q Consensus       551 ~~~~r  555 (813)
                      |.+.+
T Consensus        74 ~~L~~   78 (79)
T d1h8la1          74 FTLSR   78 (79)
T ss_dssp             EEECB
T ss_pred             EEECC
T ss_conf             99865
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure