Citrus Sinensis ID: 003547

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-
MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSSGDLICGEQVTGGCQDKVEHQGTSKGKRFRRTSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGGTVKNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYITPPDVPSFSDLKDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEENGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIENGKLNKKGRKANSTAQKKYAKRDTNKGSTTPATSNEESENFVQKQTSISNAKFSQKSSNRRGTCAAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCWKINSQTEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKDTVPQPSLIPTFEDADKKESLLKGKTTKTAKKTKTSSNLKCDKELQWNKRMKASFSGISKDGLVGESKVQEGCSSTANETQSPEGVRGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALTVGEQVYCTDTIFC
cccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccEEEEEccccHHHcccccccccccccccccccccEEEEccccccccEEEEEEcccc
ccccHHHHHHHHHHccccHEHHHccccEEcccccEEccHHccccccccccccEEccccccccccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEccccccccccccccccEEccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHccccHHcccccHHHHHcccccccccccccccccccccccccccccccHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHccccEccccccccccccccEEEccccccccccccEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEEEccccccccccEEEEEccccccHHccccccEEEEEEccEEEcHHHEcccccEEcHHHHHHHcccHHHHHccccccccccccccccccEEcccHHEccccEEccccEEEEcccHHccccccccccccEEEccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcc
MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVksmksgsncpvckvpyhrreiraaphmDNLVSVYKSMEVASGINIFVtqdesstkssgdlicgeqvtggcqdkvehqgtskgkrfrrtskatvepsgtvctkpscptkkrvqvaqyplpetptqpakleggtvknttgelksssvvirenpvinkegtvlspffwlrdeedrekssqhtetdayitppdvpsfsdlkdsedissselsptaevhgksdgldffesEIFEWTqracspellpspaktqvadaEENGKGLEAALQgsntvvdisngNATCVIFEqgngnenegrckalcprntnpnnmiengklnkkgrkANSTAQKKYakrdtnkgsttpatsneeseNFVQKqtsisnakfsqkssnrrgtcaaepipdnvlaASVRTEIVdqhgknigsdlptslgkkqgsdeDLHFMKTRKKCWKINsqteedfctkskrrkvdstevnVLENVSVVQkktykdtvpqpsliptfedadkkesllkgkttktakktktssnlkcdkELQWNKRMKASFsgiskdglvgeskvqegcsstanetqspegvrgssdigVLEKLHKTQRGALRKCETLAHKiqcsfchssenseasgemvhyyngkpvsadynggskiihshrnctewapnvyfeddtVINLEAELARSRRIkccccglkgaalgcyektcrksfhvpCAKLILQCrwdtdnfvmlcplhtssnlpnenpgsqesrkKCISKKLLTQHNkvafksdistnswQSWENKLVLCCSaltvgeqvyctdtifc
MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVksmksgsncpVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVtqdesstkssGDLICGEqvtggcqdkvehqgtskgkrfrrtskatvepsgtvctkpscptkkrVQVAQyplpetptqpakleggtvknttgelksssvvirenpvinkegtvlspfFWLRDEEDREkssqhtetdayitppdvpsfsDLKDSEDISsselsptaevhgksdGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEENGKGLEAALQGSNTVVDISNGNATCVIFEqgngnenegRCKALcprntnpnnmiengklnkkgrkanstaqkkyakrdtnkgsttpatsneesenfvqkqtsisnakfsqkssnrrgtcaaepipdnvLAASVRTEIVDQhgknigsdlptslgkkqgSDEDLHFMKTrkkcwkinsqteedfctkskrrkvdstevnvlenvsvvqkktykdtvpqpsliptfedadkkesllkgkttktakktktssnlkcdkelqwnKRMKASFSGISKDGLVGESKVQEGCSStanetqspegvrgssdigvLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTssnlpnenpgsqESRKKCISKKLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALtvgeqvycTDTIFC
MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSSGDLICGEQVTGGCQDKVEHQGTSKGKRFRRTSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGGTVKNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYITPPDVPSFSDLKDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEENGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIENGKLNKKGRKANSTAQKKYAKRDTNKGSTTPATSNEESENFVQKQTSISNAKFSQKSSNRRGTCAAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCWKINSQTEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKDTVPQPSLIPTFEDADKKEsllkgkttktakktktssnlkCDKELQWNKRMKASFSGISKDGLVGESKVQEGCSSTANETQSPEGVRGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIkccccglkgaalgcYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALTVGEQVYCTDTIFC
*************ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVT************ICG*********************************************************************************VVIRENPVINKEGTVLSPFFWLR****************************************************LDFFESEIFEWTQRAC******************************NTVVDISNGNATCVIFEQ*****************************************************************************************************************************************TRKKCWKIN*********************NVLENVSVV***************************************************************************************************VLEKLHKTQRGALRKCETLAHKIQCSFCH**********MVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLH**********************KLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALTVGEQVYCTDTIF*
******H*EKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVY****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHT***********************************************LVLCCSALTVGEQVYCTDTIFC
*********KMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVTQ*********DLICGEQVTGGCQDKV***************************KPSCPTKKRVQVAQYPLPETPTQPAKLEGGTVKNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDE************DAYITPPDVPSFSD*******************GKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEENGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIENGKLNK****************************************SISN**************AAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCWKINSQTEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKDTVPQPSLIPTFEDADKKESLLKG*************NLKCDKELQWNKRMKASFSGISKDGLVG***********************SSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNL***********KKCISKKLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALTVGEQVYCTDTIFC
*****SHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVTQD***************************************************KPSCPTKKRVQVAQYPLPETPTQPAKLE*************SSVVIRENPVINK*GTVLSPFFWLRDE***************ITPPDVPSF*DLK*********************G*DFFESEIFEWTQRACSPELLPSPAK**VA*************************************************************************************************************************************************************************************************RKV***EVNVLENVSVVQK***********************************************************************************************IGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESR***************************SWENKLVLCCSALTVGEQVYCTD***C
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSSGDLICGEQVTGGCQDKVEHQGTSKGKRFRRTSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGGTVKNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYITPPDVPSFSDLKDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEENGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIENGKLNKKGRKANSTAQKKYAKRDTNKGSTTPATSNEESENFVQKQTSISNAKFSQKSSNRRGTCAAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCWKINSQTEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKDTVPQPSLIPTFEDADKKESLLKGKTTKTAKKTKTSSNLKCDKELQWNKRMKASFSGISKDGLVGESKVQEGCSSTANETQSPEGVRGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAFKSDISTNSWQSWENKLVLCCSALTVGEQVYCTDTIFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query811 2.2.26 [Sep-21-2011]
Q8RXD4 941 Protein BREAST CANCER SUS yes no 0.347 0.299 0.518 3e-74
Q24742 3828 Histone-lysine N-methyltr N/A no 0.101 0.021 0.411 3e-11
P20659 3726 Histone-lysine N-methyltr yes no 0.094 0.020 0.412 4e-11
P15533496 Tripartite motif-containi no no 0.092 0.151 0.432 4e-10
Q9EPQ81983 Transcription factor 20 O no no 0.096 0.039 0.367 3e-09
Q9UGU01960 Transcription factor 20 O no no 0.096 0.039 0.367 3e-09
Q9C035493 Tripartite motif-containi no no 0.092 0.152 0.395 7e-09
Q1ACD8493 Tripartite motif-containi N/A no 0.092 0.152 0.395 8e-09
Q5D7J1493 Tripartite motif-containi no no 0.092 0.152 0.395 8e-09
Q5C8T6493 Tripartite motif-containi N/A no 0.092 0.152 0.395 8e-09
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  280 bits (716), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/297 (51%), Positives = 197/297 (66%), Gaps = 15/297 (5%)

Query: 6   SHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRA 65
           SHLE+MGRELKCPICLSL +SAVSL+CNHVFCNACIVKSMK  + CPVCK+PYHRREIR 
Sbjct: 5   SHLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRG 64

Query: 66  APHMDNLVSVYKSMEVASGINIFVTQDESSTKSSGDLICGEQVTGGCQDKVEHQGTSKGK 125
           APHMD+LVS+YK+ME ASGI +FV+Q+  S       +    V     DK   QG+ KG+
Sbjct: 65  APHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQVRDASVEKA-SDK-NRQGSRKGR 122

Query: 126 RFRR-----TSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGGTVKNTTG 180
             +R     T +  V+  G +  KPS  TKKRVQ+ Q    E+ T+P +    T +    
Sbjct: 123 ASKRNEYGKTKEIDVDAPGPIVMKPSSQTKKRVQLLQNLSAESLTKPTE-SVETAEKPKD 181

Query: 181 ELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYI--TPPDVPSFSDL 238
             +++ + + E+P +NKEG  LSPFFWLRDE+D E SSQ TE+D  +  TP +VPSFSDL
Sbjct: 182 YTENTVIRLDEHPSLNKEGN-LSPFFWLRDEDDGENSSQRTESDQLLGTTPVNVPSFSDL 240

Query: 239 KDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADAEE 295
            DS+  S S+     +   K +  D F+SE+FEWTQR CSPE+LPSP K +V   +E
Sbjct: 241 MDSDHESPSK----EDEQQKPNPGDMFDSEMFEWTQRPCSPEILPSPVKAKVLGRDE 293
May play a role in DNA repair and in cell-cycle control.
Arabidopsis thaliana (taxid: 3702)
>sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis GN=trx PE=3 SV=1 Back     alignment and function description
>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila melanogaster GN=trx PE=1 SV=4 Back     alignment and function description
>sp|P15533|TR30A_MOUSE Tripartite motif-containing protein 30A OS=Mus musculus GN=Trim30a PE=1 SV=2 Back     alignment and function description
>sp|Q9EPQ8|TCF20_MOUSE Transcription factor 20 OS=Mus musculus GN=Tcf20 PE=1 SV=2 Back     alignment and function description
>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens GN=TCF20 PE=1 SV=3 Back     alignment and function description
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1 SV=1 Back     alignment and function description
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3 SV=1 Back     alignment and function description
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5 PE=2 SV=1 Back     alignment and function description
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla GN=TRIM5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
359483657 1044 PREDICTED: protein BREAST CANCER SUSCEPT 0.969 0.752 0.475 0.0
224061053 1029 predicted protein [Populus trichocarpa] 0.923 0.727 0.473 0.0
297740786 1434 unnamed protein product [Vitis vinifera] 0.890 0.503 0.475 0.0
255580467 987 brca1 associated ring domain, putative [ 0.916 0.752 0.486 0.0
147809936 952 hypothetical protein VITISV_016807 [Viti 0.886 0.755 0.439 1e-158
356557797 985 PREDICTED: protein BREAST CANCER SUSCEPT 0.911 0.750 0.410 1e-141
356546514 979 PREDICTED: protein BREAST CANCER SUSCEPT 0.916 0.758 0.413 1e-140
357133046 993 PREDICTED: protein BREAST CANCER SUSCEPT 0.917 0.749 0.363 1e-117
326500362 985 predicted protein [Hordeum vulgare subsp 0.914 0.753 0.366 1e-115
449434236 1100 PREDICTED: protein BREAST CANCER SUSCEPT 0.437 0.322 0.479 1e-72
>gi|359483657|ref|XP_002273835.2| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Vitis vinifera] Back     alignment and taxonomy information
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/849 (47%), Positives = 532/849 (62%), Gaps = 63/849 (7%)

Query: 1   MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60
           MGD  SHLE+MGREL CPICLSLL+SAVSLTCNHVFCN+CI+KSMKSGSNCPVCKVPY R
Sbjct: 1   MGDS-SHLERMGRELNCPICLSLLNSAVSLTCNHVFCNSCIMKSMKSGSNCPVCKVPYGR 59

Query: 61  REIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSS------GDLICGEQ-VTGGCQ 113
           RE+R  PHMD+LVS+YKSME ASGIN+FVTQ+  STK S      GD  CG Q      +
Sbjct: 60  REVRPVPHMDSLVSIYKSMEAASGINVFVTQNAPSTKLSDKQQTEGDQNCGGQKADNASE 119

Query: 114 DKVEHQGTSKGKRFRRTSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGG 173
           ++  +Q   KGK  +R+ K   E SG    KPS P KKRVQV QYPL ETP +PAKL+GG
Sbjct: 120 ERARNQRKLKGKGPKRSLKTNPEDSGLNPAKPSFPGKKRVQVPQYPLSETPKRPAKLDGG 179

Query: 174 TVKNTTGELKSSSVVIRENPVINKEG-TVLSPFFWLRDEEDREKSSQHTETDAYITP--P 230
             + + G  K++SVV+ E P +N  G  V SPFFWLR++ED E SSQ  + D  ++   P
Sbjct: 180 LSEMSKGGPKNNSVVLNEKPALNDNGELVFSPFFWLREDEDVENSSQQMDGDLTLSSSLP 239

Query: 231 DVPSFSDLKDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQV 290
           +VPSFSD+K S+D   SEL+P  +V  + +  D F+SEIFEWTQRACSPEL  SP + QV
Sbjct: 240 NVPSFSDIKGSDDEMPSELTPKGKVDTEFNVADPFDSEIFEWTQRACSPELCSSPMEMQV 299

Query: 291 ADAEENGKGLEAALQGSNTVVDIS---------NGNATCVIFEQGNGNENEGRCKAL--- 338
            D++E     +   +G N     S           N T +  ++G G      C A+   
Sbjct: 300 PDSDE----FDEIQKGENKPDSQSATKEEEAPRTENMTGMNCKEGTG------CAAMRLP 349

Query: 339 ---CPRNTNPNNMIENGKLNKKGRKANSTAQKKYAKRDTNKGSTTPATSNEESENFVQKQ 395
               P   N N     G   K+GRK+N   QKK AKR  ++       +    E+F+  Q
Sbjct: 350 AMSSPETKNANGQNGIGISKKRGRKSNKKGQKKRAKRGADEVLGIHINAQSVVEDFIPVQ 409

Query: 396 TSISNAKFSQKSSNRRG---TC----AAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSL 448
               +   + +    +G    C    A    P+NV + SV ++ ++Q  +NI + LP SL
Sbjct: 410 DCDKDGSSNLRKKTHKGCEKACFDNNATGAAPENVSSVSVGSKSLNQDDENIITALPASL 469

Query: 449 GKKQGSDEDLHFMKTRKKCWKINSQTEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKD 508
            KK  SDE+L+  K  ++C  +N+Q+++    +SK +K++S E ++LE  ++   +   D
Sbjct: 470 VKKHVSDENLNLKKRGRRCANVNTQSQKGHTVRSKNQKLESAEDDMLEKGAITPNQINYD 529

Query: 509 TVPQPSLIPTFEDADKKESLLKGKTTKTAKKTKTSSNLKCDKELQWNKRMKASFSGISKD 568
                  + +   AD  ++  +G+      +  +  N K DK L+ +K++K S   ISK 
Sbjct: 530 MFSHSPCV-SLPMADDGKASNRGEKASKHGRIISKVNQKRDKRLRPSKKLKVSTDDISKY 588

Query: 569 GLVGESKVQEGCSS-TANETQSPEGVRGSSDIGVLE-------KLHKTQRGALRKCETLA 620
           GL+ ++  QEG +  +A  TQ     + + ++ VL+        L  T  GALRKCE++ 
Sbjct: 589 GLIDDT--QEGHTKVSAKSTQPINNNQCNPEVRVLDYSSTAKKALSATSGGALRKCESIP 646

Query: 621 HKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTV 680
           +KI C+FCHS+++SEASGEMVHY+NG+P++AD+NGGS IIHSHRNCTEWAPNVYFED T 
Sbjct: 647 NKISCAFCHSAQDSEASGEMVHYFNGRPIAADHNGGSNIIHSHRNCTEWAPNVYFEDGTA 706

Query: 681 INLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPL 740
           +NL+AEL RSRRI CCCCG+KGAALGCYEK+CRKSFH PCAKL  QCRWDTDNFVMLCPL
Sbjct: 707 VNLKAELTRSRRITCCCCGIKGAALGCYEKSCRKSFHFPCAKLTPQCRWDTDNFVMLCPL 766

Query: 741 HTSSNLPNENPG-SQESRKKCISK-KLLTQHNKVAFKSDISTNSWQSWEN-----KLVLC 793
           H SS LPNE  G   ++RKKC +K +   Q  +VA K DIST+  Q W +     KLVLC
Sbjct: 767 HASSKLPNEISGPPAKTRKKCSTKGQSDIQRAQVAVKHDISTS--QRWNSHGSPGKLVLC 824

Query: 794 CSALTVGEQ 802
           CSALTV E+
Sbjct: 825 CSALTVAEK 833

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061053|ref|XP_002300335.1| predicted protein [Populus trichocarpa] gi|222847593|gb|EEE85140.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580467|ref|XP_002531059.1| brca1 associated ring domain, putative [Ricinus communis] gi|223529354|gb|EEF31320.1| brca1 associated ring domain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147809936|emb|CAN67096.1| hypothetical protein VITISV_016807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557797|ref|XP_003547197.1| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356546514|ref|XP_003541671.1| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357133046|ref|XP_003568139.1| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326500362|dbj|BAK06270.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|449434236|ref|XP_004134902.1| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
TAIR|locus:2133109 941 BRCA1 "breast cancer susceptib 0.572 0.493 0.399 7.1e-126
TAIR|locus:2024244 714 BARD1 "AT1G04020" [Arabidopsis 0.237 0.270 0.400 1.5e-49
UNIPROTKB|D4A0Y0151 D4A0Y0 "Uncharacterized protei 0.135 0.728 0.351 8.4e-11
UNIPROTKB|E7EQQ5209 TRIM5 "Tripartite motif-contai 0.134 0.521 0.330 1.1e-10
UNIPROTKB|C9J060203 TRIM22 "E3 ubiquitin-protein l 0.127 0.507 0.319 1.6e-09
UNIPROTKB|I3LH17483 I3LH17 "Uncharacterized protei 0.135 0.227 0.380 3.8e-09
UNIPROTKB|F1RLV7492 LOC100738990 "Uncharacterized 0.135 0.223 0.380 3.9e-09
UNIPROTKB|E7EUM2623 BRCA1 "Breast cancer type 1 su 0.266 0.346 0.267 4e-09
UNIPROTKB|C9JWN872 TRIM5 "Tripartite motif-contai 0.075 0.847 0.447 4.3e-09
UNIPROTKB|F8W6N8327 TRIM5 "Tripartite motif-contai 0.134 0.333 0.330 1.2e-08
TAIR|locus:2133109 BRCA1 "breast cancer susceptibility1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 743 (266.6 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 199/498 (39%), Positives = 271/498 (54%)

Query:     1 MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60
             M D  SHLE+MGRELKCPICLSL +SAVSL+CNHVFCNACIVKSMK  + CPVCK+PYHR
Sbjct:     1 MADT-SHLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHR 59

Query:    61 REIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSSGDLICGEQVTGGCQDKVEHQG 120
             REIR APHMD+LVS+YK+ME ASGI +FV+Q+  S       +    V     DK   QG
Sbjct:    60 REIRGAPHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQVRDASVEKA-SDK-NRQG 117

Query:   121 TSKGKRFRR-----TSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGGTV 175
             + KG+  +R     T +  V+  G +  KPS  TKKRVQ+ Q    E+ T+P +    T 
Sbjct:   118 SRKGRASKRNEYGKTKEIDVDAPGPIVMKPSSQTKKRVQLLQNLSAESLTKPTE-SVETA 176

Query:   176 KNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYI--TPPDVP 233
             +      +++ + + E+P +NKEG  LSPFFWLRDE+D E SSQ TE+D  +  TP +VP
Sbjct:   177 EKPKDYTENTVIRLDEHPSLNKEGN-LSPFFWLRDEDDGENSSQRTESDQLLGTTPVNVP 235

Query:   234 SFSDLKDSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADA 293
             SFSDL DS+  S S+     E    + G D F+SE+FEWTQR CSPE+LPSP K +V   
Sbjct:   236 SFSDLMDSDHESPSKED---EQQKPNPG-DMFDSEMFEWTQRPCSPEILPSPVKAKVLGR 291

Query:   294 EE---NGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIE 350
             +E     K L      S+   +   G+A   +  +  G   E   ++     T       
Sbjct:   292 DEIDLTQKKLPKVKVASSKCKNRKAGSARNTVARRSIGVSQEDNMESSAAA-TISEQQDS 350

Query:   351 NGKLNKKGRKANSTAQKKYAKRDT-NKGSTTPATSNEESENFVQKQTSISNAKFSQKSSN 409
              G      R   +T +   AKR T +K  +T   S+    N    +      + S KSS 
Sbjct:   351 RGTSGTIIRNDVNTDENVKAKRATRSKAQSTRVQSDLNVSNEADGKQGTKRKRSSIKSS- 409

Query:   410 RRGTCAAEPIPD-NVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCW 468
                   A PI   N L  S+ TEIV + G    +  P+    ++ S  +   +K R +  
Sbjct:   410 -----PAHPIAGPNEL--SLGTEIVGK-GDQDQAHGPSDTHPEKRSPTEKPSLKKRGR-- 459

Query:   469 KINSQTE-EDFCTKSKRR 485
             K N+ +  +D   K++++
Sbjct:   460 KSNASSSLKDLSGKTQKK 477
GO:0003677 "DNA binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA;IMP
GO:0008270 "zinc ion binding" evidence=IEA
GO:0010332 "response to gamma radiation" evidence=IEP;RCA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0006310 "DNA recombination" evidence=IMP
GO:0006302 "double-strand break repair" evidence=RCA
TAIR|locus:2024244 BARD1 "AT1G04020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|D4A0Y0 D4A0Y0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQQ5 TRIM5 "Tripartite motif-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9J060 TRIM22 "E3 ubiquitin-protein ligase TRIM22" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LH17 I3LH17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLV7 LOC100738990 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E7EUM2 BRCA1 "Breast cancer type 1 susceptibility protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JWN8 TRIM5 "Tripartite motif-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6N8 TRIM5 "Tripartite motif-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00012567
hypothetical protein (1029 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 4e-18
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 7e-09
cd0016245 cd00162, RING, RING-finger (Really Interesting New 1e-08
smart0018440 smart00184, RING, Ring finger 1e-07
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 1e-07
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 2e-06
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 3e-05
TIGR00599397 TIGR00599, rad18, DNA repair protein rad18 9e-05
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 1e-04
COG52191525 COG5219, COG5219, Uncharacterized conserved protei 7e-04
COG5574271 COG5574, PEX10, RING-finger-containing E3 ubiquiti 0.001
COG5432391 COG5432, RAD18, RING-finger-containing E3 ubiquiti 0.002
PHA02929238 PHA02929, PHA02929, N1R/p28-like protein; Provisio 0.004
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information 
 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 663 HRNCTEWAPNVYFEDDT------VINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSF 716
           H NC  W+P V    D       + +++  + R R++KC  C  KGA +GC  K CR++F
Sbjct: 1   HVNCALWSPEVVQRGDDDMEGFPLEDVDKAVKRRRKLKCSLCKKKGACIGCCVKNCRRAF 60

Query: 717 HVPCAK---LILQCRWDTDNFVMLCPLHT 742
           HV CA+    + Q   D   F   CP H 
Sbjct: 61  HVTCAREAGCLFQFDGDNGKFKSYCPKHR 89

The members of this family are annotated as containing PHD domain, but the zinc-binding region here is not typical of PHD domains. The conformation here is a well-conserved cysteine-histidine rich region spanning 90 residues, where the Cys and His are arranged as HxxC(31)CxxC(6)CxxCxxxxCxxxxHxxC (21)CxxH. Length = 89
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18 Back     alignment and domain information
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 811
KOG0956 900 consensus PHD finger protein AF10 [General functio 99.76
KOG0954 893 consensus PHD finger protein [General function pre 99.76
COG5141 669 PHD zinc finger-containing protein [General functi 99.73
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.73
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.69
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 99.65
KOG0957 707 consensus PHD finger protein [General function pre 99.51
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 99.28
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.0
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 98.98
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.93
KOG0287442 consensus Postreplication repair protein RAD18 [Re 98.92
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.83
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 98.81
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.77
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 98.63
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.62
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.49
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.37
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.3
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.27
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.27
PHA02929238 N1R/p28-like protein; Provisional 98.25
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.2
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 98.18
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.16
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.12
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.09
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.01
PF1463444 zf-RING_5: zinc-RING finger domain 98.01
KOG2660331 consensus Locus-specific chromosome binding protei 97.98
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.96
PHA02926242 zinc finger-like protein; Provisional 97.86
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.85
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.59
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.44
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.43
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.4
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 97.35
KOG4367699 consensus Predicted Zn-finger protein [Function un 97.22
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.91
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 96.91
COG5152259 Uncharacterized conserved protein, contains RING a 96.91
COG5222427 Uncharacterized conserved protein, contains RING Z 96.88
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 96.87
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.39
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 96.36
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 96.19
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.98
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.93
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 95.84
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 95.6
KOG1002791 consensus Nucleotide excision repair protein RAD16 95.42
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 94.1
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 94.0
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 93.92
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 93.81
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 92.72
KOG0956 900 consensus PHD finger protein AF10 [General functio 92.61
KOG3039303 consensus Uncharacterized conserved protein [Funct 92.32
KOG0825 1134 consensus PHD Zn-finger protein [General function 91.97
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 91.55
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 90.95
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 90.7
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 90.09
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 89.52
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 89.13
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 89.09
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 87.76
KOG3161861 consensus Predicted E3 ubiquitin ligase [Posttrans 87.38
KOG1080 1005 consensus Histone H3 (Lys4) methyltransferase comp 87.28
KOG0827465 consensus Predicted E3 ubiquitin ligase [Posttrans 86.82
PF04641260 Rtf2: Rtf2 RING-finger 86.77
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 86.35
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 86.26
KOG1001674 consensus Helicase-like transcription factor HLTF/ 85.62
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 85.14
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 84.76
KOG3002299 consensus Zn finger protein [General function pred 84.22
KOG3800300 consensus Predicted E3 ubiquitin ligase containing 83.17
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 82.42
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 81.2
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 81.06
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 80.07
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information 
Probab=99.76  E-value=7.7e-20  Score=206.96  Aligned_cols=133  Identities=26%  Similarity=0.450  Sum_probs=111.2

Q ss_pred             cccccccchhhHHhh-hhcCCcccCCc--CCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhc
Q 003547          592 GVRGSSDIGVLEKLH-KTQRGALRKCE--TLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTE  668 (811)
Q Consensus       592 ~~~v~~~~~~i~~~~-~~~~~~lrpC~--s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CAL  668 (811)
                      .|-||.-||+|  .. -.--|.+|+|+  +.+.+..|.||+..+     |+|+++.+|             -|+|++|||
T Consensus        31 sVAVHQaCYGI--vqVPtGpWfCrKCesqeraarvrCeLCP~kd-----GALKkTDn~-------------GWAHVVCAL   90 (900)
T KOG0956|consen   31 SVAVHQACYGI--VQVPTGPWFCRKCESQERAARVRCELCPHKD-----GALKKTDNG-------------GWAHVVCAL   90 (900)
T ss_pred             eeeeehhccee--EecCCCchhhhhhhhhhhhccceeecccCcc-----cceecccCC-------------CceEEEEEe
Confidence            36899999999  33 23459999999  788899999999999     999998765             399999999


Q ss_pred             ccCceeeeCCc---ccchHHHHHHhhcccccccCC--------CCceeecCccCCCcceeccccccc------Ccccccc
Q 003547          669 WAPNVYFEDDT---VINLEAELARSRRIKCCCCGL--------KGAALGCYEKTCRKSFHVPCAKLI------LQCRWDT  731 (811)
Q Consensus       669 WSPeV~f~~~~---l~dI~~~i~ra~~lkC~~Cgk--------~GAsI~C~~~~C~rsFHvpCA~~~------~gc~~d~  731 (811)
                      |+|||.|.+..   .+-|+.++..+....||+|.+        .|||++|...+|++.|||+||+..      .|-+.|.
T Consensus        91 YIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dN  170 (900)
T KOG0956|consen   91 YIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDN  170 (900)
T ss_pred             eccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccccccc
Confidence            99999999643   444567778888899999974        399999999999999999999972      2334667


Q ss_pred             CceeecccCccCC
Q 003547          732 DNFVMLCPLHTSS  744 (811)
Q Consensus       732 ~~f~~fC~~H~p~  744 (811)
                      .+|.-||..|-.+
T Consensus       171 VKYCGYCk~HfsK  183 (900)
T KOG0956|consen  171 VKYCGYCKYHFSK  183 (900)
T ss_pred             ceechhHHHHHHH
Confidence            7899999999753

>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
2ecw_A85 Solution Structure Of The Zinc Finger, C3hc4 Type ( 1e-09
2egp_A79 Solution Structure Of The Ring-Finger Domain From H 6e-09
2ecv_A85 Solution Structure Of The Zinc Finger, C3hc4 Type ( 9e-09
1jm7_A112 Solution Structure Of The Brca1/bard1 Ring-domain H 4e-07
2ckl_B165 Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 2e-06
3rpg_C121 Bmi1RING1B-Ubch5c Complex Structure Length = 121 2e-06
2jmd_A63 Solution Structure Of The Ring Domain Of Human Traf 3e-06
2h0d_B100 Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti 9e-06
3hct_A118 Crystal Structure Of Traf6 In Complex With Ubc13 In 1e-05
2eci_A86 Solution Structure Of The Ring Domain Of The Human 2e-05
3hcs_A170 Crystal Structure Of The N-Terminal Domain Of Traf6 3e-05
4ayc_B138 Rnf8 Ring Domain Structure Length = 138 4e-05
4epo_C149 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 6e-05
4ayc_A138 Rnf8 Ring Domain Structure Length = 138 7e-05
1chc_A68 Structure Of The C3hc4 Domain By 1h-Nuclear Magneti 7e-05
1jm7_B117 Solution Structure Of The Brca1/bard1 Ring-domain H 2e-04
2ect_A78 Solution Structure Of The Zinc Finger, C3hc4 Type ( 4e-04
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Tripartite Motif Protein 30 Length = 85 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 8  LEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG------SNCPVCKVPYHRR 61
          LE +  E+ CPICL LL   VS  CNH FC ACI  + +S        NCPVC+VPY   
Sbjct: 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72
Query: 62 EIRAAPHMDNLV 73
           ++   H+ N+V
Sbjct: 73 NLKPNLHVANIV 84
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human Tripartite Motif Protein 34 Length = 79 Back     alignment and structure
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Tripartite Motif-Containing Protein 5 Length = 85 Back     alignment and structure
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112 Back     alignment and structure
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 165 Back     alignment and structure
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure Length = 121 Back     alignment and structure
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6 Length = 63 Back     alignment and structure
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 100 Back     alignment and structure
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 118 Back     alignment and structure
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf Receptor-Associated Factor 6 Protein Length = 86 Back     alignment and structure
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6 Length = 170 Back     alignment and structure
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138 Back     alignment and structure
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149 Back     alignment and structure
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138 Back     alignment and structure
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68 Back     alignment and structure
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 117 Back     alignment and structure
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 2e-18
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 7e-18
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 1e-17
2ecw_A85 Tripartite motif-containing protein 30; metal bind 2e-15
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 5e-15
2ysl_A73 Tripartite motif-containing protein 31; ring-type 6e-15
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 7e-15
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 8e-15
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 2e-14
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 4e-14
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 6e-14
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 2e-13
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 6e-12
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 7e-12
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 9e-12
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 2e-11
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 5e-11
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 9e-11
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 2e-10
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 3e-10
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 3e-10
2ysj_A63 Tripartite motif-containing protein 31; ring-type 3e-10
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 4e-10
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 1e-09
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 3e-04
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 1e-09
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 2e-09
1z6u_A150 NP95-like ring finger protein isoform B; structura 3e-09
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 3e-09
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 5e-09
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 6e-09
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 1e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 1e-08
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 2e-08
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 5e-08
2ect_A78 Ring finger protein 126; metal binding protein, st 1e-06
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 1e-06
2ecm_A55 Ring finger and CHY zinc finger domain- containing 2e-06
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 3e-06
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 1e-05
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 2e-05
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 3e-05
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 1e-04
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 1e-04
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 2e-04
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 5e-04
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 7e-04
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 5  RSHLEKMGRELKCPICLSLLSSAVSLT-CNHVFCNACIVKSMKSGSNCPVCKVPYHRREI 63
          R+ L+++ + L+C  C ++L   V L  C H+FC+ C+   +  G+ CPVC  P   +++
Sbjct: 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDL 70

Query: 64 RAAPHMDNLVSVYKSME 80
          +    +D+++ +   + 
Sbjct: 71 KINRQLDSMIQLCSKLR 87
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 811
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 4e-14
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 9e-11
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 4e-10
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 2e-09
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 5e-09
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 6e-09
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 5e-07
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 6e-07
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 2e-06
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 4e-06
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 2e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 4e-04
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 5e-04
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 0.001
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 0.003
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 3  DQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSN---CPVCKVPYH 59
          + ++ +  M + L+CPICL L+   VS  C+H+FC  C++K +        CP+CK    
Sbjct: 10 EVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69

Query: 60 RREIRAAPHMDNLVSVYKSMEVA 82
          +R ++ +     LV     +  A
Sbjct: 70 KRSLQESTRFSQLVEELLKIICA 92
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query811
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.49
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.42
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.42
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.41
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.36
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.34
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 99.0
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.89
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.79
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.78
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.75
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.6
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.47
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.43
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.32
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.92
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 97.43
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 89.88
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 81.19
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4e-15  Score=105.59  Aligned_cols=72  Identities=33%  Similarity=0.808  Sum_probs=62.5

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             454104443472320253455041678811199699870189---999888989878888874889999999983
Q 003547            7 HLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG---SNCPVCKVPYHRREIRAAPHMDNLVSVYKS   78 (811)
Q Consensus         7 ~le~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~---~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~   78 (811)
                      .+..+++.|.||||+++|.+|++++|||+||..||.+|+...   ..||+||..+...++.+|..+.++++.++.
T Consensus        14 ~~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          14 VINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf             999663584997218231891883799864167899999977999809698883875528757899999999999
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure