Citrus Sinensis ID: 003591

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQESSRY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccEEEEEEccccccccccccEEEEEEEEccEEEEcccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccccccEEEEcccccccccccccccccEEEEcccccccccEEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHccccccccccccccccEEccccccccccccccccEEEcccccccccccccccccccccHHHHHcccccccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccEEEEEEcccccccccccccccccccccEEEEccccccccccccccEEEEcccccccEEEEEEcccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEccccEEEEEcccccEEEEEEEEcccccccHHHccccccEEcccccccEEEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEccccccEEEEEEcccEEEEEEcccccccccEEEEEEccccccccccccccEEEEEcccccccccEEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccEccccccccccccccccccccEEEEEEEcccccEEEEEEEcccEEEEEEcccccccEEcccccccccccccccEEEEEEEEccccccccccccccccccccccccccccHHHEEEHHccccccccccEEEEEcccccccEEEEEEcccEEEEEEccccHHHHHccccHcccccccEcccccccccccccccEEEEEEccccccEEEEEEEEccccEEEEEEcccccccccEEcccccccHHcccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHEEEEHHHHHccHcccc
mrfnfdlsepstdsrlsltpkeevewvplqkhpvfsapdavrngggkfngapknlvawdgasrlyywdqNAQCLHRIsvrlgepdptsilaafpskvmradvkLNFEVSRISINRNGSALLLIGSDGLCVMYLygrtcssdnktiicrtvsvgsqiyfssSNVIRTLqvswhpysdthlgilssdSVFRLFNLasdvmqpeqeyylqpvepgryrnaasicpvdfsfggdhlwdrFSVFVLfsdgsiyilcpvvpfgsvyKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEatfpevaqetidegdppalkahphalfdssvslqgplrkichggedeslavrgaecEGRAVSFLYNLVSKDSIvvtswsggqlqIDALAdeiqpvwtvnipprlrvdsqdriHGLAMicepisgelpvvkldqpldhtvwlghpppllrlatvdlalpkntesgsiitmSIDPLMQERIYivhdggidsvvlhflpftsqtrgkdetnrspsvhpvlntcqgetsspsplcgfvslsdsfgyswivgvtSTQECVVIEMKTWNLllpvqidsekksvdlgakkerdtpdiiskellsgpkvillpqaspnlrsvaadsiegrSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLrnlpgahkkplsgAEHALKAELDHFEGVELDALHSSIEALRARLRRltqspegspgnqqrqtlgknyVQDAQISQLRSLMEKLSlvnsenlkKVKLVESALKKQESSRY
mrfnfdlsepstdsrlsltpKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSqtrgkdetnrspSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWnlllpvqidsekksvdlgakkerdtpdiiskellsgpkVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRltqspegspgnqqrqtlgkNYVQDAQISQLRSLMEKLSlvnsenlkkvklvesalkkqessry
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQESSRY
*************************WVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQ*****************LF***VSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFT*******************************LCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQID************************L*GPKVILLP********VAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIID*****************************************************************LDHFEGVELDAL****************************************************************************
**************************VPLQKH**********************LVAWDGASRLYYWDQNAQCLHRISV******************MRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYG**********ICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYY***************CPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQ***************SLAISWLEATFP******************PHALFDSSVSLQGPLRKICHGG***SLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPV*******************LAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFT*******************NTCQ***SSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKT******************************************************************YFNLFQENYVEYAHKVHFELKH*A**********************************IDHAVQQHNILEQ******************************************************************************************************************
*****************LTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQ***********SVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT**************LGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVES**********
*********************EEVEWVPLQKHPVF**************GAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKK*************DIISKELLSGPKVILLPQ**********DSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQ*********************AQISQLRSLMEKLSLVNSENLKKVKLVESALKK******
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MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPGAHKKPLSGAEHALKAELDHFEGVExxxxxxxxxxxxxxxxxxxxxPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQESSRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query808 2.2.26 [Sep-21-2011]
Q99567741 Nuclear pore complex prot yes no 0.320 0.349 0.223 0.0006
>sp|Q99567|NUP88_HUMAN Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1 SV=2 Back     alignment and function desciption
 Score = 47.0 bits (110), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 32/291 (10%)

Query: 454 PKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDE----------T 503
           P +++    + +  DP    R +  H+ G+ SV L ++    +  G DE          T
Sbjct: 384 PFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELST 443

Query: 504 NRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLP 563
            +   V  +L T       P+P+ GF  + D  G + I  +TST EC++     W LL  
Sbjct: 444 EQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI-----WPLLST 497

Query: 564 VQIDS-----EKKSVDLGAKKER---DTPDIISKELLSGPKVILLPQASPNL-----RSV 610
           V   S      ++ V++     R   +TPD   K + S   ++    A+P       + +
Sbjct: 498 VHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRS---ILQRSVANPAFLKASEKDI 554

Query: 611 AADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILK 670
           A    E    L +   +F+E Y+        E++     L      Q   LS  + +   
Sbjct: 555 APPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKS 614

Query: 671 VEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAEL 721
           + E   RL ++ + A ++   +  R++ L +   +    LS +E  +K EL
Sbjct: 615 LREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKEL 665
Essential component of nuclear pore complex.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
225448406814 PREDICTED: uncharacterized protein LOC10 0.995 0.987 0.726 0.0
255587898760 conserved hypothetical protein [Ricinus 0.925 0.984 0.691 0.0
356537982806 PREDICTED: uncharacterized protein LOC10 0.959 0.961 0.669 0.0
449463056782 PREDICTED: uncharacterized protein LOC10 0.931 0.962 0.664 0.0
15239202810 nuclear pore complex protein-like protei 0.995 0.992 0.628 0.0
110737974810 hypothetical protein [Arabidopsis thalia 0.995 0.992 0.627 0.0
297806585810 hypothetical protein ARALYDRAFT_487368 [ 0.995 0.992 0.620 0.0
224101133642 predicted protein [Populus trichocarpa] 0.773 0.973 0.732 0.0
357461195874 Nuclear pore complex protein-related pro 0.954 0.882 0.564 0.0
224101131480 predicted protein [Populus trichocarpa] 0.592 0.997 0.736 0.0
>gi|225448406|ref|XP_002271517.1| PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera] gi|297736620|emb|CBI25491.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1211 bits (3133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/814 (72%), Positives = 680/814 (83%), Gaps = 10/814 (1%)

Query: 1   MRFNFDLSEPSTDSRLS---LTPKEEVEWVPLQKHPVFSAPDAVR----NGGGKFNGAPK 53
           MR+NFD+ E       +    TPKEEV+W+PLQ HP+F+   A       G    +   +
Sbjct: 1   MRYNFDVPEKEEQQPRAPSPATPKEEVQWIPLQNHPIFTTATATATAASTGHPSAHRTAR 60

Query: 54  NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISI 113
           NL+AWDGASRLY+WD   +C+HRIS+RLGEPDPTS+LA  PSKV++ADV+LNF V RISI
Sbjct: 61  NLMAWDGASRLYFWDSVKKCIHRISIRLGEPDPTSVLADSPSKVLQADVQLNFVVDRISI 120

Query: 114 NRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173
           NRNGSALLL GSDGLC+MYLYGRT ++DN TIICR+VS+GSQIYF+S+NVIR LQVSWHP
Sbjct: 121 NRNGSALLLAGSDGLCIMYLYGRTSTTDN-TIICRSVSIGSQIYFNSNNVIRALQVSWHP 179

Query: 174 YSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLW 233
            SDTHLGILSSDSVFR+F+L+SDV  PEQEYYLQPV+PG+ RNAASICPVDFSFG DHLW
Sbjct: 180 SSDTHLGILSSDSVFRIFDLSSDVGLPEQEYYLQPVDPGKSRNAASICPVDFSFGADHLW 239

Query: 234 DRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAIS 293
           DRFSVF+LFSDGSIYILCPVVPFGSVYKWESILEIYNDA TFGL+S NS AV NS+LAIS
Sbjct: 240 DRFSVFILFSDGSIYILCPVVPFGSVYKWESILEIYNDAHTFGLKSANSTAVSNSNLAIS 299

Query: 294 WLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECE 353
           WLEATFPE+A +  + G+   LKAHP+ALFD+S+SLQGPLRK+C+GGE+E LAVR AECE
Sbjct: 300 WLEATFPELAHQATEGGNLSMLKAHPYALFDASLSLQGPLRKVCNGGEEEFLAVRVAECE 359

Query: 354 GRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAM 413
           GRAVSFLYNLVSKDSI+VT+WSGGQLQIDALADEIQPVW    PPR+RVDS DRI GLAM
Sbjct: 360 GRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWIAGSPPRVRVDSLDRILGLAM 419

Query: 414 ICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQE 473
           ICE I  EL VVKLDQP D T WLGHPPPLLRLA +DLALP+N ESGS+I++ +DPL+ E
Sbjct: 420 ICESIPCELSVVKLDQPPDQTFWLGHPPPLLRLAIIDLALPRNMESGSLISLFVDPLIPE 479

Query: 474 RIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLS 533
           RIY +HDGGIDS+VLHFLPFTS+  GK+ET R+PSVHPVL+TCQ E+SS SP+CGFV+LS
Sbjct: 480 RIYSLHDGGIDSIVLHFLPFTSEATGKNETMRTPSVHPVLSTCQAESSSSSPICGFVALS 539

Query: 534 DSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLS 593
           DSFGYSWIV VTS+QEC+V+EMK+ NLL+PV +D E K + L   K+ DTP++ISKELLS
Sbjct: 540 DSFGYSWIVAVTSSQECIVLEMKSLNLLIPVHVDIE-KDISLEEPKQIDTPNVISKELLS 598

Query: 594 GPKVILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQI 653
           GPKV+ +PQ SPNLRSVAADSIEGRSTLHQYF LF ENYVEYAHKV+FELKHH P LK+I
Sbjct: 599 GPKVVFIPQTSPNLRSVAADSIEGRSTLHQYFKLFHENYVEYAHKVYFELKHHGPHLKRI 658

Query: 654 IDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGA 713
           IDDQ ARL EAQ K+LKVEE+Q  LEERI HA Q H+ LE+RLQ LRNLPGAHKKPLS A
Sbjct: 659 IDDQLARLGEAQQKLLKVEEKQPTLEERIHHANQMHSFLEERLQSLRNLPGAHKKPLSRA 718

Query: 714 EHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLG-KNYVQDAQI 772
           E   K+ELD F GVELDAL SSIE L AR RR  QS +G   NQQR   G KN+V+DAQI
Sbjct: 719 EREFKSELDRFRGVELDALRSSIETLNARSRRYVQSSKGCTSNQQRHISGRKNFVEDAQI 778

Query: 773 SQLRSLMEKLSLVNSENLKKVKLVESALKKQESS 806
           SQL+S + KLSLVNSEN K+VK+VESALK QE +
Sbjct: 779 SQLKSAIAKLSLVNSENAKRVKVVESALKSQERT 812

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587898|ref|XP_002534434.1| conserved hypothetical protein [Ricinus communis] gi|223525302|gb|EEF27949.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356537982|ref|XP_003537485.1| PREDICTED: uncharacterized protein LOC100801853 [Glycine max] Back     alignment and taxonomy information
>gi|449463056|ref|XP_004149250.1| PREDICTED: uncharacterized protein LOC101216348, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|15239202|ref|NP_196187.1| nuclear pore complex protein-like protein [Arabidopsis thaliana] gi|9759093|dbj|BAB09662.1| unnamed protein product [Arabidopsis thaliana] gi|332003525|gb|AED90908.1| nuclear pore complex protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110737974|dbj|BAF00923.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806585|ref|XP_002871176.1| hypothetical protein ARALYDRAFT_487368 [Arabidopsis lyrata subsp. lyrata] gi|297317013|gb|EFH47435.1| hypothetical protein ARALYDRAFT_487368 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224101133|ref|XP_002312155.1| predicted protein [Populus trichocarpa] gi|222851975|gb|EEE89522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357461195|ref|XP_003600879.1| Nuclear pore complex protein-related protein [Medicago truncatula] gi|355489927|gb|AES71130.1| Nuclear pore complex protein-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101131|ref|XP_002312154.1| predicted protein [Populus trichocarpa] gi|222851974|gb|EEE89521.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
TAIR|locus:2166424810 MOS7 "MODIFIER OF SNC1,7" [Ara 0.992 0.990 0.630 5.8e-272
DICTYBASE|DDB_G0279039 961 DDB_G0279039 [Dictyostelium di 0.306 0.258 0.264 2.3e-11
UNIPROTKB|Q99567741 NUP88 "Nuclear pore complex pr 0.324 0.353 0.222 1.5e-09
UNIPROTKB|Q3SZ56742 NUP88 "Nucleoporin 88kDa" [Bos 0.325 0.354 0.216 1.1e-08
RGD|620182742 Nup88 "nucleoporin 88" [Rattus 0.167 0.181 0.258 1.3e-08
MGI|MGI:104900753 Nup88 "nucleoporin 88" [Mus mu 0.167 0.179 0.258 2.7e-08
FB|FBgn0026207702 mbo "members only" [Drosophila 0.108 0.125 0.302 3.1e-08
ZFIN|ZDB-GENE-050522-297720 nup88 "nucleoporin 88" [Danio 0.149 0.168 0.286 3e-07
UNIPROTKB|F1NIC8722 NUP88 "Uncharacterized protein 0.360 0.403 0.221 1.2e-06
POMBASE|SPBC13A2.02803 nup82 "nucleoporin Nup82" [Sch 0.216 0.217 0.219 4.9e-05
TAIR|locus:2166424 MOS7 "MODIFIER OF SNC1,7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2615 (925.6 bits), Expect = 5.8e-272, P = 5.8e-272
 Identities = 512/812 (63%), Positives = 630/812 (77%)

Query:     1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
             M+FNF+ +E + DSR S TPKE V WVPLQ HPVF++  + ++        P+N +AWDG
Sbjct:     1 MKFNFNETEDAPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPAVSQLFPRNFMAWDG 60

Query:    61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
              SR+YYWD     LHR+S+RLGEP+P+S+LAA PSKVM+ D+++ F VS+ISIN++GSA+
Sbjct:    61 DSRVYYWDSRRYLLHRLSLRLGEPEPSSVLAAVPSKVMQPDLQVTFSVSKISINKSGSAV 120

Query:   121 LLIGSDGLCVMYLYGR-TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179
             LL GSDG+CVMYL+GR +   DN  +ICR VS+GS+IY SS + I  LQ SWHP SDTHL
Sbjct:   121 LLAGSDGICVMYLFGRASVIEDN--VICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHL 178

Query:   180 GILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVF 239
             GILSSD+VFRLF+L+SD   PEQEYYLQP EPGR R A+SI P DFSFGGDHLWDRF+VF
Sbjct:   179 GILSSDAVFRLFDLSSDTELPEQEYYLQPGEPGRSRTASSIYPADFSFGGDHLWDRFTVF 238

Query:   240 VLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATF 299
             +LF+DGSIYILCPVVPFGSVYKWES++EIYNDA  +G++S NSLAV NSSLAI WLEATF
Sbjct:   239 ILFTDGSIYILCPVVPFGSVYKWESVMEIYNDANMYGVKSSNSLAVSNSSLAIEWLEATF 298

Query:   300 PEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSF 359
             P++ ++     +   +KA P+AL D+S++LQGPL K   G  DE  AVR AEC+GRAVS 
Sbjct:   299 PDLTEQGTRGENILVVKAQPYALLDASLALQGPLYKASSGDGDEDFAVREAECKGRAVSL 358

Query:   360 LYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPIS 419
             LYNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW      RLR++S ++I G+AMICE   
Sbjct:   359 LYNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNI 418

Query:   420 GELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVH 479
              ELPV   + PLDHTVWLGHPPPLLRLA VDLALPK  E GS++T+  D L+ ERIY +H
Sbjct:   419 SELPVATSNLPLDHTVWLGHPPPLLRLAMVDLALPKMREGGSLVTLFADSLLPERIYSLH 478

Query:   480 DGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYS 539
             DGGIDS VLH LPFTSQ  GKDE  ++PSVH VL+TCQ E S+ SPL GFV LSDSFGYS
Sbjct:   479 DGGIDSTVLHSLPFTSQASGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYS 537

Query:   540 WIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGA--KKERDTPDIISKELLSGPKV 597
             WIV V S+ EC+V EMKTW+LLLP+ + ++K +V   A  KKE++   IISKELL+GPK+
Sbjct:   538 WIVAVLSSGECIVAEMKTWDLLLPIHVSTDK-TVSSSAIEKKEQENSCIISKELLAGPKI 596

Query:   598 ILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQ 657
              + P A PN RS  A+S+EGRS L  Y  LF ENY+EYAHKVHFEL+HHAP LK+IIDDQ
Sbjct:   597 RIAPHALPNQRSTPANSVEGRSILLDYVKLFHENYIEYAHKVHFELQHHAPNLKRIIDDQ 656

Query:   658 HARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHAL 717
             H RL+EA  KI KVE+ QS LE+RID A+++H+ LEQ LQ LR+LPG HKKPL+ AE   
Sbjct:   657 HQRLAEANEKISKVEKNQSFLEKRIDKAIERHDSLEQCLQRLRSLPGTHKKPLTRAELDF 716

Query:   718 KAELDHFEGVELDALHSSIEALRARLRRLTQ-SPEGS--PGNQQRQTLGKNYVQDAQISQ 774
             K+ELD + GVE+DAL SSIE LRAR+++ TQ S +G+    +Q++Q   KN +QD Q+SQ
Sbjct:   717 KSELDQYAGVEVDALQSSIETLRARVKKSTQKSHKGTVVAASQKKQYSKKNLIQDTQMSQ 776

Query:   775 LRSLMEKLSLVNSENLKKVKLVESALKKQESS 806
             L+S + KLSL+NS+N KKVK+VESALK QESS
Sbjct:   777 LQSTLAKLSLMNSDNSKKVKIVESALKSQESS 808
GO:0005634 "nucleus" evidence=ISM
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005643 "nuclear pore" evidence=IDA
GO:0006611 "protein export from nucleus" evidence=IMP
GO:0009627 "systemic acquired resistance" evidence=IMP
GO:0045087 "innate immune response" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
DICTYBASE|DDB_G0279039 DDB_G0279039 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q99567 NUP88 "Nuclear pore complex protein Nup88" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ56 NUP88 "Nucleoporin 88kDa" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620182 Nup88 "nucleoporin 88" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:104900 Nup88 "nucleoporin 88" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0026207 mbo "members only" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-297 nup88 "nucleoporin 88" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIC8 NUP88 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC13A2.02 nup82 "nucleoporin Nup82" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029274001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (752 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00014046001
SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
pfam10168717 pfam10168, Nup88, Nuclear pore component 1e-09
pfam10168717 pfam10168, Nup88, Nuclear pore component 8e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
pfam12795239 pfam12795, MscS_porin, Mechanosensitive ion channe 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
pfam13870177 pfam13870, DUF4201, Domain of unknown function (DU 0.004
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component Back     alignment and domain information 
 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 64/261 (24%), Positives = 106/261 (40%), Gaps = 52/261 (19%)

Query: 29  LQKHPVFSAPDAVRNG-----GGKFNGAPKNLV-AWDGASRLYYWDQNAQCLHRISVR-- 80
           L KH +F+    +R G             +NL+   DG   L+ WD    C   +++R  
Sbjct: 8   LSKHALFAK---LREGLPVVQRTTSKRIAQNLLDCLDGL--LFAWDAEESCFLVVNLRSP 62

Query: 81  LG---EPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR- 136
           LG   EP  +       S          FEV R+ ++   S + L G  G+ ++ L  R 
Sbjct: 63  LGAGEEPAKSQYQTLLCS------NPPLFEVDRVLVSPEQSHVALSGPRGVMILELPRRW 116

Query: 137 ----TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRL 190
                     K I CRT  +  ++ F+SS  +   Q  W+P    + HL +L+SD+  R+
Sbjct: 117 GKDSEFEGGKKQINCRTFPLAERL-FTSSTSLELRQARWYPSEVSEPHLLLLTSDNTIRV 175

Query: 191 FNLASDVMQPEQ-----EYYLQPVEPGRYRN-AASI--CPVDFSFG-----GDHLWDR-- 235
           +NL S    P Q     +   + V      +  AS+    V F FG        L+ +  
Sbjct: 176 YNL-SKPRHPWQVGPLSQADDESVLRNGANSSLASLGETAVAFDFGPLAASPKTLFGQKP 234

Query: 236 ------FSVFVLFSDGSIYIL 250
                 + +++L+ +G  Y+L
Sbjct: 235 KQERIEYPLYILYENGETYLL 255

Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells. Length = 717
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 808
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 100.0
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 100.0
KOG3091508 consensus Nuclear pore complex, p54 component (sc 97.77
PF13874141 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B 97.25
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 96.92
PTZ00421493 coronin; Provisional 96.46
KOG2096420 consensus WD40 repeat protein [General function pr 95.68
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.64
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.54
KOG0645312 consensus WD40 repeat protein [General function pr 95.45
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 95.41
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.39
KOG2048691 consensus WD40 repeat protein [General function pr 95.34
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.15
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.97
PRK11637 428 AmiB activator; Provisional 94.9
KOG1274 933 consensus WD40 repeat protein [General function pr 94.65
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 94.63
PTZ00420568 coronin; Provisional 94.54
KOG0772641 consensus Uncharacterized conserved protein, conta 94.53
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 94.47
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.33
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.23
PRK04778569 septation ring formation regulator EzrA; Provision 94.14
PRK10361 475 DNA recombination protein RmuC; Provisional 93.89
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 93.83
KOG4673 961 consensus Transcription factor TMF, TATA element m 93.68
PRK09039 343 hypothetical protein; Validated 93.57
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 93.48
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 93.46
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 93.17
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.09
KOG0302440 consensus Ribosome Assembly protein [General funct 93.06
PRK11637 428 AmiB activator; Provisional 93.03
KOG0266456 consensus WD40 repeat-containing protein [General 92.8
KOG0643327 consensus Translation initiation factor 3, subunit 92.79
PTZ00421493 coronin; Provisional 92.61
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.55
KOG0291893 consensus WD40-repeat-containing subunit of the 18 92.53
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 92.37
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 92.2
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.04
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.01
PRK09039 343 hypothetical protein; Validated 91.98
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.88
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.79
KOG0315311 consensus G-protein beta subunit-like protein (con 91.72
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 91.7
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 91.66
KOG0289506 consensus mRNA splicing factor [General function p 91.57
KOG0289506 consensus mRNA splicing factor [General function p 91.51
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 91.5
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 91.46
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 91.32
PRK04863 1486 mukB cell division protein MukB; Provisional 91.32
COG4026290 Uncharacterized protein containing TOPRIM domain, 91.3
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 91.24
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 91.18
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 91.15
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 91.05
COG4942 420 Membrane-bound metallopeptidase [Cell division and 90.97
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 90.97
KOG0270463 consensus WD40 repeat-containing protein [Function 90.89
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 90.83
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 90.81
PF04065233 Not3: Not1 N-terminal domain, CCR4-Not complex com 90.38
PF14662193 CCDC155: Coiled-coil region of CCDC155 90.27
KOG0973942 consensus Histone transcription regulator HIRA, WD 90.23
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 90.23
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 90.22
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.22
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 90.19
KOG0971 1243 consensus Microtubule-associated protein dynactin 90.11
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 90.06
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 89.97
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 89.87
PRK12704 520 phosphodiesterase; Provisional 89.61
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 89.61
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.55
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 89.52
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 89.39
KOG0647347 consensus mRNA export protein (contains WD40 repea 89.37
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 89.26
PF00038312 Filament: Intermediate filament protein; InterPro: 89.18
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 89.18
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 89.16
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 89.14
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 89.03
KOG0315311 consensus G-protein beta subunit-like protein (con 89.0
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.85
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 88.85
KOG0963 629 consensus Transcription factor/CCAAT displacement 88.82
PRK11028330 6-phosphogluconolactonase; Provisional 88.82
COG2433652 Uncharacterized conserved protein [Function unknow 88.77
PRK11028330 6-phosphogluconolactonase; Provisional 88.76
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 88.68
COG5185 622 HEC1 Protein involved in chromosome segregation, i 88.68
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.59
COG4372 499 Uncharacterized protein conserved in bacteria with 88.41
PRK11281 1113 hypothetical protein; Provisional 88.27
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.23
PRK02224 880 chromosome segregation protein; Provisional 88.19
KOG0286343 consensus G-protein beta subunit [General function 88.15
PLN00181793 protein SPA1-RELATED; Provisional 88.08
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 87.74
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 87.69
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 87.66
PF11172201 DUF2959: Protein of unknown function (DUF2959); In 87.66
PF05597132 Phasin: Poly(hydroxyalcanoate) granule associated 87.64
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 87.54
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 87.44
KOG0263707 consensus Transcription initiation factor TFIID, s 87.39
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 87.39
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 87.07
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 87.07
KOG2150 575 consensus CCR4-NOT transcriptional regulation comp 87.06
PLN00181793 protein SPA1-RELATED; Provisional 86.81
PHA02562 562 46 endonuclease subunit; Provisional 86.8
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 86.75
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 86.68
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 86.39
smart00806426 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a 86.39
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 86.32
PRK04863 1486 mukB cell division protein MukB; Provisional 86.29
TIGR02977219 phageshock_pspA phage shock protein A. Members of 86.29
KOG0284464 consensus Polyadenylation factor I complex, subuni 86.15
PHA02562 562 46 endonuclease subunit; Provisional 86.15
KOG0933 1174 consensus Structural maintenance of chromosome pro 86.14
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.14
PRK10929 1109 putative mechanosensitive channel protein; Provisi 85.99
KOG3091508 consensus Nuclear pore complex, p54 component (sc 85.99
PRK00106 535 hypothetical protein; Provisional 85.76
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 85.68
KOG4302 660 consensus Microtubule-associated protein essential 85.61
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 85.4
PF06401214 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-termi 85.31
PF09726 697 Macoilin: Transmembrane protein; InterPro: IPR0191 85.3
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 85.08
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 84.96
PF03915 424 AIP3: Actin interacting protein 3; InterPro: IPR02 84.84
KOG0308735 consensus Conserved WD40 repeat-containing protein 84.72
PRK02224 880 chromosome segregation protein; Provisional 84.71
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 84.56
KOG0996 1293 consensus Structural maintenance of chromosome pro 84.56
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 84.51
PRK03918 880 chromosome segregation protein; Provisional 84.34
KOG0971 1243 consensus Microtubule-associated protein dynactin 84.28
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 84.09
KOG2110391 consensus Uncharacterized conserved protein, conta 84.0
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 83.94
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 83.52
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 83.22
KOG0290364 consensus Conserved WD40 repeat-containing protein 83.18
PF13870177 DUF4201: Domain of unknown function (DUF4201) 82.94
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 82.94
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 82.67
KOG3647338 consensus Predicted coiled-coil protein [General f 82.64
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 82.6
KOG2110391 consensus Uncharacterized conserved protein, conta 82.6
KOG0318603 consensus WD40 repeat stress protein/actin interac 82.51
PF10186302 Atg14: UV radiation resistance protein and autopha 82.36
PF05278269 PEARLI-4: Arabidopsis phospholipase-like protein ( 82.3
PF00038312 Filament: Intermediate filament protein; InterPro: 81.99
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.96
KOG0266456 consensus WD40 repeat-containing protein [General 81.84
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 81.79
cd07666243 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S 81.68
KOG2055514 consensus WD40 repeat protein [General function pr 81.58
PRK03918 880 chromosome segregation protein; Provisional 81.55
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 81.39
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 81.38
KOG0646476 consensus WD40 repeat protein [General function pr 81.33
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 81.29
PRK10929 1109 putative mechanosensitive channel protein; Provisi 81.29
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 81.23
cd07623224 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of 81.17
TIGR01000 457 bacteriocin_acc bacteriocin secretion accessory pr 81.09
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 81.04
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 80.92
PF08397219 IMD: IRSp53/MIM homology domain; InterPro: IPR0136 80.88
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 80.78
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.78
KOG0964 1200 consensus Structural maintenance of chromosome pro 80.77
PF01442202 Apolipoprotein: Apolipoprotein A1/A4/E domain; Int 80.76
KOG0639705 consensus Transducin-like enhancer of split protei 80.61
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 80.58
PRK04778569 septation ring formation regulator EzrA; Provision 80.46
cd07596218 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So 80.35
COG3883265 Uncharacterized protein conserved in bacteria [Fun 80.11
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.04
PTZ00420568 coronin; Provisional 80.03
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-109  Score=894.40  Aligned_cols=718  Identities=23%  Similarity=0.216  Sum_probs=585.6

Q ss_pred             CccccCCCCCCCCCCCCCCCccccccccCCCCCcccccccccCCCCCCCC-CCceEEEEeCCceEEEEeCCCcEEEEEee
Q 003591            1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNG-APKNLVAWDGASRLYYWDQNAQCLHRISV   79 (808)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~L~~hpiF~~~~~~~~~~~~~~~-~~rnll~~~~~~~l~~w~~~~~~l~~~~l   79 (808)
                      |.|||++.++.+++|++||||+.++|+.+++||.|...+. +++.+.+.+ .+||+++|+ |+++|+||+.++|+++.+|
T Consensus         1 m~~~~~~~~d~~~~~~~p~~~~~lr~Vl~~~~ptea~~p~-s~~lP~V~~l~trN~~~~~-gD~lf~Wd~~ds~Llv~~l   78 (741)
T KOG4460|consen    1 MAAAEGPVGDGELWQWLPNHFLRLREVLKNQSPTEAEKPA-SSSLPSVPPLLTRNVVFGL-GDELFLWDGEDSSLLVVRL   78 (741)
T ss_pred             CCcccCCCCcchhhhcCCCccccHhHHhhhcCchhhcccc-cCCCCCCccccccchhccc-CCEEEEEecCcceEEEEEe
Confidence            9999999999999999999999999999999999987754 445565532 599999999 6699999999999999999


Q ss_pred             ccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCC----CC-CceeeEEEEecc
Q 003591           80 RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS----DN-KTIICRTVSVGS  154 (808)
Q Consensus        80 R~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~----d~-~~~~c~t~~v~~  154 (808)
                      |. .+++.++.+...|++|.|+.++.|+|.+|.+|++|.++||+|.+||+||+||+|||+.    |+ ..+.||++.||.
T Consensus        79 R~-~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~  157 (741)
T KOG4460|consen   79 RG-PSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE  157 (741)
T ss_pred             cc-CCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc
Confidence            97 3444455567899999999999999999999999999999999999999999999762    33 458899999997


Q ss_pred             eeeeccCCccceeEEEEecCC--CCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCC
Q 003591          155 QIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHL  232 (808)
Q Consensus       155 ~~~~~~~~~~~I~qv~WHP~s--d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~  232 (808)
                      + ||++++.+.++||+|||.|  |+||+||++||+||+||++.+.+     .++.+..+||+....+++    +||    
T Consensus       158 ~-~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te-----lylqpgepgRS~tn~Si~----sFG----  223 (741)
T KOG4460|consen  158 R-FFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE-----LYLQPGEPGRSPTNVSIL----SFG----  223 (741)
T ss_pred             e-eeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch-----hhccCCCcCCCCccceee----ccC----
Confidence            5 6788899999999999999  99999999999999999988554     467776778876654443    676    


Q ss_pred             CCceEEEEEecCccEEEEcccCCCCCCcChhHHHHHHhhhhhhhhcccchhhhhchHHHHHHHHhhcccccccccCCCCC
Q 003591          233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDP  312 (808)
Q Consensus       233 w~~~tLyiL~~~GdIYalcP~lP~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ns~~q~~Wl~~~~~~~~~~~~~~~~~  312 (808)
                                 +|.||.+||..|++..+.++.+-   ++...++. +.+.....|+....+|++..|..+..+++ +++.
T Consensus       224 -----------e~~~~~l~~~~a~~~V~~~Esv~---Nd~~~l~~-S~ktL~~~nSs~k~E~iE~p~~~L~EnG~-~~NI  287 (741)
T KOG4460|consen  224 -----------EEESLVLNKGRAYTAVLGEEAVA---NDFGPLAA-SPKTLFGQNSSGKDEVVEYPLYILYENGE-TFNI  287 (741)
T ss_pred             -----------CcceeeeccCcccccccCchhhc---cCcccccc-CccceeeecccccceeEecceeeeeccCc-ceeE
Confidence                       59999999999999999888763   44333333 55556678888889999999999888765 4444


Q ss_pred             CccccccCCccCCcccccCCeeccCCCCCCchhhhccccccCcceeEEEeecCCCcEEEEEecCceEEEEeecCCCCccc
Q 003591          313 PALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVW  392 (808)
Q Consensus       313 ~~v~~~p~~~~~~~~~lQGPf~~~~~~~~d~y~~~~~~~~~~~a~~il~~~~~~~~il~ia~~~G~v~i~l~~~ev~~~W  392 (808)
                      -.+.++|+..   ..+||||++|.| .++|+|+        .++|.++|++. .++||||||++|++++|++.++.++.|
T Consensus       288 yi~~~~~~~~---~~~LQGPl~~~p-~aeDnyg--------~~~CaL~~lpS-~p~ilViA~S~G~L~h~~L~e~e~~~~  354 (741)
T KOG4460|consen  288 YISLLHSPGN---IGKLQGPLPMHP-AAEDNYG--------YDACALLCLPS-VPNILVIATSSGMLYHCVLLEGEEEDD  354 (741)
T ss_pred             EEEEccCcch---hhhhcCCccCCc-ccccccc--------hhhheeEeecC-CCCeEEEEecCCceeeeeeeccccccc
Confidence            4455566654   689999999996 7788998        68999888885 999999999999999999999999999


Q ss_pred             ccCCCCCccccccccccccceeecc-ccCCCCccccCCCCCccccCCCCCCccchhhhcccCCCCCCCCCeeEEEeCCCC
Q 003591          393 TVNIPPRLRVDSQDRIHGLAMICEP-ISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLM  471 (808)
Q Consensus       393 ~~~~~~~l~v~~~~~~~~~~~i~E~-i~~el~~~~~~~~~~~~~~~~~~p~Ll~l~~vdl~~p~~~~~~~~~~l~~D~~~  471 (808)
                      .+++..+....++.++.+++||||+ +++++. ..                        -..|.+...+|+|.+++|+.+
T Consensus       355 hS~N~s~ds~~~~~p~~yV~~~~E~~i~l~l~-~~------------------------~~~p~d~~~~cP~~L~Rd~~~  409 (741)
T KOG4460|consen  355 HSSNKSWDSRIDLIPSLYVFECVELELALKLA-SG------------------------EDDPFDSDFSCPVKLHRDPKC  409 (741)
T ss_pred             cccccchhhhhhcchhhHHHHHHhhhhhhhhc-cC------------------------CCCCccccCCCCchhhhcccc
Confidence            9988876654477888889999998 554431 11                        123555678999999999999


Q ss_pred             CceEEEEEcCCceEEEccccccc----cc-cCCCCC--cCC---CCceeEEEecCCCCCCCCCCeeeEEEeecCCCceEE
Q 003591          472 QERIYIVHDGGIDSVVLHFLPFT----SQ-TRGKDE--TNR---SPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWI  541 (808)
Q Consensus       472 ~~r~~v~H~~GVh~VsL~Wv~~L----e~-e~g~d~--~l~---~~~v~~ll~t~~~~~~~~~pl~G~~~i~D~~g~~lL  541 (808)
                      +-||||+|++|||+|.++|++.+    +. +.++|-  .+.   .+++++++||....+...+||.||+.+.|++|+ ++
T Consensus       410 ~Lry~~~heaGvh~v~~S~i~El~~~L~s~e~D~d~L~~l~~~S~~~~e~iLcTk~~~c~~V~pi~Gf~~L~d~~G~-~I  488 (741)
T KOG4460|consen  410 PLRYHCTHEAGVHSVGLSWIHELHKFLGSDEEDKDSLQELSTESKCFVEHILCTKPLPCRQVAPIRGFWILPDILGP-TI  488 (741)
T ss_pred             cccchhhhccceEeehhhhHHHHHHHhcCCCcchHHHHhhhhhhhhhhHHHhcCCCCcccccccccceeeccccCCc-eE
Confidence            99999999999999999999955    22 333331  122   345999999998888788999999999999988 69


Q ss_pred             EEEcCCCcEEEEEeccccc-cC-CccccccccccccCCCcCCCCchhhcccccCCCcccccCCCCCCCccccCcccchhh
Q 003591          542 VGVTSTQECVVIEMKTWNL-LL-PVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRS  619 (808)
Q Consensus       542 l~~t~~~~~v~l~l~~~~~-~~-P~~~~~~~~~~s~~~~~~~~~~~~~~~~ll~~p~~~~~P~~~~~l~s~~~~~~e~~~  619 (808)
                      ||+.++|+||+.++..... .. |..+.-.+     .+-.+++...++.+.++.+|+....|++-+.. ...|...|+++
T Consensus       489 V~vLsSGecI~w~Ll~~~h~~~~p~~~~~~d-----~Ev~eQE~~~~f~k~i~s~lqrsva~paL~~~-~SsP~~~E~~~  562 (741)
T KOG4460|consen  489 VCILSSGECIIWPLLSTVHPASPPLLCTRED-----VEVAEQETPDSFEKHIRSILQRSVANPALLKA-SSAPPPEECLQ  562 (741)
T ss_pred             EEEecCCcEEEEeeeccccccCCcccCchhH-----hHHHhhhcCCcHHHHHHHhhhhhcCChhcccc-ccCCCcHHHHH
Confidence            9999999999987754222 11 21111011     11123333444556666666533333332222 33355889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591          620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL  699 (808)
Q Consensus       620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L  699 (808)
                      +|.+|+++|||+|+.++|+|++|++||+..|+.++++|+.+|++++|++++|++++++|++|||+|+++|+.|++|+++|
T Consensus       563 lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L  642 (741)
T KOG4460|consen  563 LLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL  642 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCccc-CcHHHHHHHHHH
Q 003591          700 RNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNY-VQDAQISQLRSL  778 (808)
Q Consensus       700 ~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~l~~~  778 (808)
                      +....++.|+|++|||.|++||+.+. +++++|.+.||+++++.+++++- ++.+   +..-..+-| ++++|+++||+.
T Consensus       643 ~~~~~~~lp~l~~AErdFk~Elq~~~-~~~~~L~~~iET~~~~~~KQ~~H-~~~v---~~al~K~~Y~l~~~Q~~~iqsi  717 (741)
T KOG4460|consen  643 LHSFHSELPVLSDAERDFKKELQLIP-DQLRHLGNAIETVTMKKDKQQQH-MEKV---LSALPKPTYILSAYQRKCIQSI  717 (741)
T ss_pred             HhcccccCCcchhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhccCCcccccHHHHHHHHHH
Confidence            88777999999999999999999887 59999999999999999994433 3321   111112223 679999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHh
Q 003591          779 MEKLSLVNSENLKKVKLVESALK  801 (808)
Q Consensus       779 L~~~~~~i~e~~~k~~~~~~~~~  801 (808)
                      |++++++|.||.||||+|++.++
T Consensus       718 L~~L~~~i~~~~k~VK~i~~~v~  740 (741)
T KOG4460|consen  718 LKELGEHIREMVKQVKDIRNHVN  740 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999886

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria Back     alignment and domain information
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>smart00806 AIP3 Actin interacting protein 3 Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6 Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 7e-06
1c1g_A 284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Length = 452 Back     alignment and structure
 Score =  109 bits (273), Expect = 2e-25
 Identities = 52/373 (13%), Positives = 109/373 (29%), Gaps = 43/373 (11%)

Query: 28  PLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPT 87
            L   P+F A           + +P+ + +    +R+ +   N        +R       
Sbjct: 6   RLSALPIFQASL-------SASQSPRYIFSSQNGTRIVFIQDN-------IIRW-----Y 46

Query: 88  SILAAFPSKVMRADVKLNFE-VSRISINRNGSALLLIGSDGLCVMYLYGR--TCSSDNKT 144
           ++L       +     L  +    +  + +G  L L   + + VM +          +  
Sbjct: 47  NVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ 106

Query: 145 IICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQ 202
              +                   +V +HP S  D+ + +L  D    +F++ +   +   
Sbjct: 107 DAFQIFHYSID-EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS-QEKPI 164

Query: 203 EYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKW 262
                    G       I  ++FS  G  L+           G I+   P +P   +   
Sbjct: 165 VLNKPNNSFGLDARVNDITDLEFSKDGLTLY----CLNTTEGGDIFAFYPFLPSVLLLNE 220

Query: 263 ESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHAL 322
           + +  I N +        ++  V      I  L+             G     K +    
Sbjct: 221 KDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHENWNSRFGKVDIQKEY---- 276

Query: 323 FDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQID 382
                 +QGP   I     +        +     ++ +     ++ IV  S+  G L + 
Sbjct: 277 --RLAKVQGPFT-INPFPGELY------DYTATNIATILIDNGQNEIVCVSFDDGSLILL 327

Query: 383 ALADEIQPVWTVN 395
               E+   W V+
Sbjct: 328 FKDLEMSMSWDVD 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.48
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 95.2
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 94.27
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 94.21
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 94.05
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 93.87
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 93.23
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.83
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 92.71
d1tbga_340 beta1-subunit of the signal-transducing G protein 92.51
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 88.17
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 87.26
d1tbga_340 beta1-subunit of the signal-transducing G protein 84.47
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 82.68
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 80.06
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.48  E-value=0.023  Score=31.03  Aligned_cols=113  Identities=10%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             CEEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             4013289968899989999258-399999699888899984046799842513431588643369998538997799991
Q 003591          105 NFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS  183 (808)
Q Consensus       105 ~f~i~~i~is~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt  183 (808)
                      ...|..+.++|+|++||..+.. .|.|-.+...  .    .+....+.         .....|..+.|+|.+ ..|++..
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~--~----~~~~~~~~---------~~~~~v~~v~~s~d~-~~l~~~~  121 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT--T----HILKTTIP---------VFSGPVKDISWDSES-KRIAAVG  121 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSST--T----CCEEEEEE---------CSSSCEEEEEECTTS-CEEEEEE
T ss_pred             CCCEEEEEEECCCCEEECCCCCCEEEEEEEECC--C----CCCCCCCC---------CCCCCCCCCCCCCCC-CCCCCCC
T ss_conf             888899999489996722556736746631011--1----10000134---------335754332333111-0001111


Q ss_pred             C--CCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEE
Q ss_conf             4--98289986358999873589803379998899898530788703799997169999904862999
Q 003591          184 S--DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI  249 (808)
Q Consensus       184 s--D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~~~GdIYa  249 (808)
                      +  |..+++|++...  .+...+.           .....+.+.+|.+.   +.+.+..-..+|.|+.
T Consensus       122 ~~~~~~~~v~~~~~~--~~~~~l~-----------~h~~~v~~v~~~~~---~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1         122 EGRERFGHVFLFDTG--TSNGNLT-----------GQARAMNSVDFKPS---RPFRIISGSDDNTVAI  173 (311)
T ss_dssp             CCSSCSEEEEETTTC--CBCBCCC-----------CCSSCEEEEEECSS---SSCEEEEEETTSCEEE
T ss_pred             CCCCCCCCCCCCCCC--CCCCCCC-----------CCCCCCCCCCCCCC---CEEEECCCCCCCCCCC
T ss_conf             221111111111111--1111111-----------11111111111211---1012000112211111
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure