Citrus Sinensis ID: 003686

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800---
MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYGKSPNMKVSPVSPTTGEKSIHYFSKSDNSDARYQKNPTFSKCAPSHFRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTYTSVRKPAPAMSVRSDPFSDSGSDHCSATPSSSAAQAALTVQPSCVKLKRGREEAAASFLKEDAIQMKTLNPRKGGYGFSSGSSSVGASSATKIDGLKKKRCKDKKAVNSNEREMANRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNAVSKTPHESFSTEIKDKKEERQKDFVNGEKGDANKCSEFVNTKTGVQIKKSLPASDVETDNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKVEKEAMVCQSKEAREDKMVVYKRRTLKETGKVLVLDT
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccEEcccEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEEEccccccccEEEEEcccccccEEEEEEcccccccEEEccccccccccccccEEEcccccccccccccccccccccHHHHHHHcHHHHHHHHHcccccccccccccccHHHHHHHccccHHcccccHHHHcccccccHHHHcHHcccccHHHHHHHcccccccEEEEcc
ccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHEcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEHcccHccEHEHHHHHHHcccEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHcHHHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHcccccEEEEEccccccccEEEEEEEEEcccccEEEEEEEccccccccccccEcccccccEcEEEEEccEEEEccccEEEEEEEEEEccccEEEEEcccccEEEEEEccccccccccccccccEEEEEEEEccccHcccEEEEEEEEEccEEEEEEcccccccEEEEcHHHHHEEccccccEEEccccccccccccEEcccccccHHHHHHcccccccccccccccccccccccccccHHHHcccccccccccccHHHHHccccHHHcccccccccccEEEEEEcccccccEEEEEcc
MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQklypeldglpQLLVILDVHISASKRINGMVDWYRVlgvepladdeTIQMQYRKLALIihpdkstsagAEAAFQILTEAWNILsdkskrldydqkrngrygkspnmkvspvspttgeksihyfsksdnsdaryqknptfskcapshfrpkpstfwttcnACKMHFEYLRTYLnnnlvcpqcRQLFLavetappplndtmtgntytsvrkpapamsvrsdpfsdsgsdhcsatpsssAAQAALTVQPSCVKLKRGREEAAASFLKEDAIQMktlnprkggygfssgsssvgassatkidglkkkrckdkkAVNSNEREMANRIftgnggvwisgfenggsesgrvkiagnqipgcrRELSLLQIRNMLMNKAKKEICWKLDELCqnavsktphesfstEIKDKKEERQKdfvngekgdankcsefvntktgvqikkslpasdvetdnkdadptsmivpdpdfhdfdqdrtemsfsenqvwaayddddgmpRYYAMIQSVISLKPFKMRISWLNsksnnelaplnwvgsgfpktsgdfwrgkyevydSLNSFSHKVrwakgtrgaihiyprkGEVWALYRNWradwsectpdevihKYDMVEVLEdynektgigvvpllkvprfKTVFRQHLEqskrrtipreeifrfshrvpsylltgqeghnspkgcleldpastpLELLQVLTEAQLEKMEtaentkeeypvggeqnteKELVKNGKIIEEQGISEDVRKKVEKEAMVCQSKEAREDKMVVYKRRTlketgkvlvldt
MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWnilsdkskrldydqkrngrygkspnmkvspvspttgeKSIHYFSKSDNSDARYQKNPtfskcapshfrpKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTYTSVRKPAPAMSVRSDPFSDSGSDHCSATPSSSAAQAALTVQPSCVKLKRGREEAAASFLKEDAIQMKTLNPRKggygfssgsssvgassatkidglkkkrckdkkavnsneremanriftgnggvWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNavsktphesfsteikdkkeerqkdfvngekgdankcsefvntktgvqikkslpasdvetdnkdadptsmivpdPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSfshkvrwakgtrgaihiyprkgEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEktgigvvpllkvprFKTVFrqhleqskrrtipreeifrfSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMetaentkeeypvggeqntekelvkngkiieeqgisedvrkkVEKEamvcqskearedkmvvykrrtlketgkvlvldt
MECNkdeaararklaekklaekdVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYGKSPNMKVSPVSPTTGEKSIHYFSKSDNSDARYQKNPTFSKCAPSHFRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTYTSVRKPAPAMSVRSDPFSDSGSDHCsatpsssaaqaaLTVQPSCVKLKRGREEAAASFLKEDAIQMKTLNPRKggygfssgsssvgassATkidglkkkrckdkkAVNSNEREMANRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNAVSKTPHESFSTEIKDKKEERQKDFVNGEKGDANKCSEFVNTKTGVQIKKSLPASDVETDNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKVEKEAMVCQSKEAREDKMVVYKRRTLKETGKVLVLDT
********************************KAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS*******************************************************************STFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVET*********************************************************************************************************************************NRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNA*****************************************************************************************NQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQ***RTIPREEIFRFSHRVPSYLLT**********************LL***********************************************************************VY****************
***NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRN*************************************************FRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAV*************************************************************************************************************************************************************************************************************************************************************************MIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWS**T*DEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTE*****************************************************************************KVLVLD*
**********ARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYGKSPNM**********EKSIHYFSKSDNSDARYQKNPTFSKCAPSHFRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTYTSVRKPAP******************************TVQPSCVKLKRGREEAAASFLKEDAIQMKTLNPRKGGYG******************************NSNEREMANRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNAV************KDKKEERQKDFVNGEKGDANKCSEFVNTKTGVQIKKSLPASDVETDNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKVEKEAMVCQSKEAREDKMVVYKRRTLKETGKVLVLDT
*EC**DE*ARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG***************************************************KPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPP****************************************************************************************************************************************************************************************************************************************************************PTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTE*************************************************************EDKMVVYKRRTLKETGKVLVLDT
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MECNxxxxxxxxxxxxxxxxxxxxxGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYGKSPNMKVSPVSPTTGEKSIHYFSKSDNSDARYQKNPTFSKCAPSHFRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTYTSVRKPAPAMSVRSDPFSDSGSDHCSATPSSSAAQAALTVQPSCVKLKRGREEAAASFLKEDAIQMKTLNPRKGGYGFSSGSSSVGASSATKIDGLKKKRCKDKKAVNSNEREMANRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICWKLDELCQNAVSKTPHESFSTEIKDKKEERQKDFVNGEKGDANKCSEFVNTKTGVQIKKSLPASDVETDNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKVEKEAMVCQSKEAREDKMVVYKRRTLKETGKVLVLDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query803 2.2.26 [Sep-21-2011]
Q9QYI4376 DnaJ homolog subfamily B yes no 0.159 0.340 0.306 7e-12
Q7ZXQ8371 DnaJ homolog subfamily B N/A no 0.153 0.331 0.293 2e-11
Q9NXW2375 DnaJ homolog subfamily B yes no 0.159 0.341 0.308 2e-11
Q58DR2370 DnaJ homolog subfamily B yes no 0.154 0.335 0.289 3e-11
Q87VN8314 Curved DNA-binding protei yes no 0.088 0.226 0.5 3e-11
Q0IIE8379 DnaJ homolog subfamily B no no 0.161 0.343 0.284 4e-11
Q28I38375 DnaJ homolog subfamily B yes no 0.158 0.338 0.317 5e-11
Q8TBM8379 DnaJ homolog subfamily B no no 0.161 0.343 0.278 1e-10
Q149L6379 DnaJ homolog subfamily B no no 0.161 0.343 0.273 1e-10
B0KK26318 Curved DNA-binding protei yes no 0.088 0.223 0.452 4e-10
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2 Back     alignment and function desciption
 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 70/173 (40%), Gaps = 45/173 (26%)

Query: 1   MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYP--------------------- 39
           ME NKDEA R   +A K +     E A     KAQ+LYP                     
Sbjct: 1   MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDH 60

Query: 40  ------------------------ELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEP 75
                                   E  G           ++A KR+    D+Y +LGV  
Sbjct: 61  PQPTDTTHTTTKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSR 120

Query: 76  LADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128
            A DE ++  YRKLAL  HPDK+ + GA  AF+ +  A+ +LS+  KR  YDQ
Sbjct: 121 SASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 173

Mus musculus (taxid: 10090)
>sp|Q7ZXQ8|DJB14_XENLA DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1 Back     alignment and function description
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4 Back     alignment and function description
>sp|Q58DR2|DJB12_BOVIN DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2 SV=1 Back     alignment and function description
>sp|Q87VN8|CBPA_PSESM Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cbpA PE=3 SV=1 Back     alignment and function description
>sp|Q0IIE8|DJB14_BOVIN DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2 SV=1 Back     alignment and function description
>sp|Q28I38|DJB14_XENTR DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1 Back     alignment and function description
>sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2 SV=1 Back     alignment and function description
>sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2 SV=1 Back     alignment and function description
>sp|B0KK26|CBPA_PSEPG Curved DNA-binding protein OS=Pseudomonas putida (strain GB-1) GN=cbpA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query803
224136189738 predicted protein [Populus trichocarpa] 0.902 0.982 0.511 0.0
255540213783 conserved hypothetical protein [Ricinus 0.956 0.980 0.518 0.0
224122036658 predicted protein [Populus trichocarpa] 0.814 0.993 0.508 0.0
359473614 1168 PREDICTED: uncharacterized protein LOC10 0.917 0.630 0.466 0.0
449440969841 PREDICTED: uncharacterized protein LOC10 0.977 0.933 0.448 0.0
255564086753 conserved hypothetical protein [Ricinus 0.885 0.944 0.471 0.0
356518880793 PREDICTED: uncharacterized protein LOC10 0.921 0.933 0.460 0.0
224057750670 predicted protein [Populus trichocarpa] 0.829 0.994 0.481 0.0
356507592691 PREDICTED: uncharacterized protein LOC10 0.826 0.960 0.470 0.0
356507362813 PREDICTED: uncharacterized protein LOC10 0.925 0.913 0.464 0.0
>gi|224136189|ref|XP_002322265.1| predicted protein [Populus trichocarpa] gi|222869261|gb|EEF06392.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/803 (51%), Positives = 510/803 (63%), Gaps = 78/803 (9%)

Query: 1   MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKR 60
           MECNK+EA R +++AEKK  E+D+ GA+  ALKAQKLYP LDGLPQLL  LDVH++A  R
Sbjct: 1   MECNKEEAFRVKEIAEKKFIERDIAGARRFALKAQKLYPALDGLPQLLATLDVHMAADNR 60

Query: 61  INGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDK 120
            NG VDWYRVL VEP A ++TI+  YRKLALI+HPDK+ + GA  AF I++EAWN+LSDK
Sbjct: 61  TNGEVDWYRVLDVEPSASEDTIRRHYRKLALILHPDKNKAVGAHGAFNIISEAWNLLSDK 120

Query: 121 SKRLDYDQKRN--GRYGKSPNMKVSPVSPTTGEKSIHYFSKSDNSDARYQKNPTFSKCAP 178
           +KR+ YDQKRN      K P+ K S   PT            +NS+AR QKN    K AP
Sbjct: 121 AKRIAYDQKRNVTDMDQKVPHWKSS--VPT---------GHDNNSNARSQKNAMRPKPAP 169

Query: 179 SHFRPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAPPPLNDTMTGNTY 238
                KP+TFWT CNACK  FEYLRTYLN++L+C  C + FL VET PP    +M GN  
Sbjct: 170 PPLFSKPNTFWTICNACKTQFEYLRTYLNHSLLCQNCHRSFLGVETPPP----SMDGNG- 224

Query: 239 TSVRKPAPAMSVRSDPFSDSGSDHCSATPSSSAAQAALTVQPSCVKLKRGREEAAASFLK 298
                P+P  +  S   + +   H     S++                 G +  + +F K
Sbjct: 225 -----PSPIWTSYSQEHNSTW--HVRTENSTNM----------------GPKFQSGAFSK 261

Query: 299 EDAIQMKTLNPRKGGYGFSSGSSSVGASSATKIDGLKKK-------RCKDKKAVNSNERE 351
           +            GG+G S+ S+  GA S      LK+K       R    +  NSN RE
Sbjct: 262 D------------GGFG-SAPSTLSGAQSKK----LKRKHEEEFLYRKTKTQRANSNGRE 304

Query: 352 MANRIFTGNGGVWISGFENGGSESGRVKIAGNQIPGCRRELSLLQIRNMLMNKAKKEICW 411
            A ++   NG V  SG +    E+GR  I+GN       ELS ++IR MLM +AKK+I  
Sbjct: 305 TAKQLANRNGRVGESGSQKSSLEAGRRSISGNHKVNSTSELSQIEIRKMLMERAKKDISK 364

Query: 412 KLDELCQNAVSKTPHESFSTEIKDKKEE--RQKDFVNGEKGDANKCSEFVNTKTGVQIKK 469
           K+ E    A       +  T  KD K+E  +QKD   G K DA +C EF+++K+     +
Sbjct: 365 KVKEWSSVAT------ALKTSEKDIKKEGGKQKD---GTKADAKECPEFLDSKSRAHTTE 415

Query: 470 SLPA-SDVETDNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAM 528
             P  ++ + D    D   M VPDPDFHDFD+DRTE SF +NQVWAAYDDDDGMPRYYAM
Sbjct: 416 PSPINANDDPDTNINDWPVMSVPDPDFHDFDKDRTESSFGDNQVWAAYDDDDGMPRYYAM 475

Query: 529 IQSVISLKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKV 588
           I SVIS KPFKMRISWLN+KSN EL PLNW+GSGF KTSGDFW GK++V  SLNSFSHKV
Sbjct: 476 IHSVISRKPFKMRISWLNTKSNRELGPLNWIGSGFYKTSGDFWIGKHKVNKSLNSFSHKV 535

Query: 589 RWAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVV 648
           +W KG+RG I IYP KG++WA+Y+NW  DW+E TPDEVIHKYDM+EVLEDY E+ G+ V 
Sbjct: 536 KWVKGSRGTIQIYPGKGDIWAVYKNWSPDWNERTPDEVIHKYDMMEVLEDYKEERGVAVA 595

Query: 649 PLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPAS 708
           PL+KV  FKTVFRQH + SK RTIPREE+FRFSH+VPS LLTGQEG N+PKGC ELDPAS
Sbjct: 596 PLVKVAGFKTVFRQHPDSSKTRTIPREEMFRFSHQVPSVLLTGQEGQNAPKGCWELDPAS 655

Query: 709 TPLELLQVLTEAQLE-KMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKV 767
           TPLELLQVL+E QL+  METAE  KE+Y         +E V+    +EE+G+     +  
Sbjct: 656 TPLELLQVLSEVQLDGMMETAEKDKEKYLSRDMTKFNEEFVEYVNTVEEKGVVGKAARGD 715

Query: 768 EKEAMVCQSKEAREDKMVVYKRR 790
              A   + KE  ED ++VYKRR
Sbjct: 716 VANARKKKRKETNEDTVMVYKRR 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540213|ref|XP_002511171.1| conserved hypothetical protein [Ricinus communis] gi|223550286|gb|EEF51773.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224122036|ref|XP_002318734.1| predicted protein [Populus trichocarpa] gi|222859407|gb|EEE96954.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473614|ref|XP_002271091.2| PREDICTED: uncharacterized protein LOC100257476 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440969|ref|XP_004138256.1| PREDICTED: uncharacterized protein LOC101223022 [Cucumis sativus] gi|449501461|ref|XP_004161373.1| PREDICTED: uncharacterized LOC101223022 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255564086|ref|XP_002523041.1| conserved hypothetical protein [Ricinus communis] gi|223537724|gb|EEF39345.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356518880|ref|XP_003528105.1| PREDICTED: uncharacterized protein LOC100797672 [Glycine max] Back     alignment and taxonomy information
>gi|224057750|ref|XP_002299311.1| predicted protein [Populus trichocarpa] gi|222846569|gb|EEE84116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507592|ref|XP_003522548.1| PREDICTED: uncharacterized protein LOC100811443 [Glycine max] Back     alignment and taxonomy information
>gi|356507362|ref|XP_003522436.1| PREDICTED: uncharacterized protein LOC100788095 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query803
TAIR|locus:2163786726 AT5G53150 [Arabidopsis thalian 0.383 0.424 0.473 1.1e-120
TAIR|locus:2040110656 AT2G25560 [Arabidopsis thalian 0.376 0.460 0.438 6.3e-110
TAIR|locus:2051244706 AT2G05230 [Arabidopsis thalian 0.302 0.344 0.439 1e-95
TAIR|locus:2051274706 AT2G05250 [Arabidopsis thalian 0.302 0.344 0.439 1e-95
TAIR|locus:2180024 884 AT5G18750 [Arabidopsis thalian 0.430 0.391 0.319 3.9e-66
TAIR|locus:504954888485 AT5G50115 [Arabidopsis thalian 0.155 0.257 0.541 5.1e-65
TAIR|locus:2181261 1104 AT5G27240 [Arabidopsis thalian 0.287 0.209 0.368 1.9e-62
TAIR|locus:2081046673 AT3G06340 [Arabidopsis thalian 0.371 0.442 0.332 4.3e-62
TAIR|locus:2114880 1165 AT3G04980 [Arabidopsis thalian 0.398 0.274 0.278 4.2e-59
TAIR|locus:2122950558 AT4G19570 [Arabidopsis thalian 0.198 0.284 0.443 1.8e-37
TAIR|locus:2163786 AT5G53150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 152/321 (47%), Positives = 214/321 (66%)

Query:   446 NGEKGDANKCSEFVNTK---TGVQIKKSLPASDVETDNKDADPTSMIVPDPDFHDFDQDR 502
             N  K  ++K SE   +K   T  ++++S+     E+D    +   ++VPD DFH+FD DR
Sbjct:   407 NSTKAMSSKASEVERSKMSSTANEVERSVEVIPHESD----EVKEIVVPDSDFHNFDLDR 462

Query:   503 TEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGSG 562
             +E +F ++Q+WAAYDD DGMPR+YA IQ VIS+ PFK++ISWLNSK+ +E  P++W+G+G
Sbjct:   463 SESAFKDDQIWAAYDDADGMPRFYARIQKVISVNPFKLKISWLNSKTTSEFGPIDWMGAG 522

Query:   563 FPKTSGDFWRGKYEVYDSLNSFSHKVRWAKGTRGAIHIYPRKGEVWALYRNWRADWSECT 622
             F K+ GDF  G+YE  D+LN+FSH V + KG RG +HI P+KG+VWALYRNW  +W + T
Sbjct:   523 FAKSCGDFRCGRYESTDTLNAFSHSVDFTKGARGLLHILPKKGQVWALYRNWSPEWDKNT 582

Query:   623 PDEVIHKYDMVEVLEDYNEKT-GIGVVPLLKVPRFKTVFRQHLEQSKRRTIPREEIFRFS 681
             PDEV HKY+MVEVL+DY E    + V  LLK   F+ VFR+  E+   R I +EE+ RFS
Sbjct:   583 PDEVKHKYEMVEVLDDYTEDDQSLTVALLLKAEGFRVVFRRCTEKLGVRKIAKEEMLRFS 642

Query:   682 HRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEAQLEKMETAENTKEEYPVGGEQ 741
             H+VP Y+LTG+E  N+P+G LELDPA+TP        EA  EK E  +  ++   V  ++
Sbjct:   643 HQVPHYILTGKEADNAPEGFLELDPAATPCAFSSENAEAD-EKSEAVKENEQGEAV--KE 699

Query:   742 NTEKELVKNGKIIEEQGISED 762
             N E E +K  +  E + + E+
Sbjct:   700 NEESEALKENE--ESEAVKEN 718
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2040110 AT2G25560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051244 AT2G05230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051274 AT2G05250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180024 AT5G18750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954888 AT5G50115 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181261 AT5G27240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081046 AT3G06340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114880 AT3G04980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122950 AT4G19570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
pfam11926218 pfam11926, DUF3444, Domain of unknown function (DU 1e-103
pfam0022663 pfam00226, DnaJ, DnaJ domain 5e-19
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 2e-16
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 2e-15
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 4e-15
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 6e-14
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 2e-13
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 2e-12
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 2e-12
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 5e-12
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 1e-11
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 2e-11
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 9e-11
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 2e-10
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 2e-10
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 2e-10
COG2214237 COG2214, CbpA, DnaJ-class molecular chaperone [Pos 3e-10
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 6e-10
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 7e-10
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 7e-10
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 2e-09
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 2e-09
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 3e-09
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 3e-09
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 3e-09
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 3e-09
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 5e-09
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 8e-09
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 1e-08
TIGR03835 871 TIGR03835, termin_org_DnaJ, terminal organelle ass 2e-08
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 3e-08
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 4e-08
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-07
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 3e-07
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 7e-07
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 3e-06
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 2e-05
PRK09430267 PRK09430, djlA, Dna-J like membrane chaperone prot 0.002
>gnl|CDD|221319 pfam11926, DUF3444, Domain of unknown function (DUF3444) Back     alignment and domain information 
 Score =  316 bits (813), Expect = e-103
 Identities = 116/218 (53%), Positives = 152/218 (69%), Gaps = 3/218 (1%)

Query: 479 DNKDADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPF 538
            N    P  + VPDPDFHDFD+DR+E SF+  Q+WA YDDDDGMPRYYA I+ V+S+ PF
Sbjct: 1   SNSSDSPNEIDVPDPDFHDFDKDRSESSFAVGQIWALYDDDDGMPRYYARIKKVLSVPPF 60

Query: 539 KMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYEVYDSLNSFSHKVRWAK-GTRGA 597
           K+RI+WL  K ++E     WV  G P + G F  GK E  +S+N FSH+V   K G RG 
Sbjct: 61  KLRITWLEPKPDSEEEID-WVDEGLPVSCGKFKLGKTEEIESVNMFSHQVVPEKKGRRGE 119

Query: 598 IHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFK 657
             IYPRKGE+WALY+NW  DW+  TPD+  ++Y++VEVL DY ++ GI V PL+KV  F 
Sbjct: 120 YEIYPRKGEIWALYKNWSPDWNADTPDKKTYEYEIVEVLSDYTDEAGISVAPLVKVEGFV 179

Query: 658 TVFRQHLEQ-SKRRTIPREEIFRFSHRVPSYLLTGQEG 694
           +VF++ L+      TIP+EE+ RFSH+VPS+ LTG+EG
Sbjct: 180 SVFKRDLQGGIATITIPKEEMLRFSHQVPSFRLTGEEG 217

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 210 amino acids in length. This domain is found associated with pfam00226. This domain has two conserved sequence motifs: FSH and FSH. Length = 218
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 803
PF11926217 DUF3444: Domain of unknown function (DUF3444); Int 100.0
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.86
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.75
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.74
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.67
PRK14288369 chaperone protein DnaJ; Provisional 99.65
PRK14296372 chaperone protein DnaJ; Provisional 99.65
PRK14279392 chaperone protein DnaJ; Provisional 99.61
PRK14287371 chaperone protein DnaJ; Provisional 99.59
PRK14286372 chaperone protein DnaJ; Provisional 99.59
PRK14278378 chaperone protein DnaJ; Provisional 99.58
PRK14276380 chaperone protein DnaJ; Provisional 99.58
PRK14298377 chaperone protein DnaJ; Provisional 99.58
PRK14299291 chaperone protein DnaJ; Provisional 99.58
PRK14283378 chaperone protein DnaJ; Provisional 99.57
PRK14291382 chaperone protein DnaJ; Provisional 99.57
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.56
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.56
PRK14280376 chaperone protein DnaJ; Provisional 99.56
PRK14282369 chaperone protein DnaJ; Provisional 99.55
PRK14285365 chaperone protein DnaJ; Provisional 99.55
PRK14277386 chaperone protein DnaJ; Provisional 99.55
PRK14294366 chaperone protein DnaJ; Provisional 99.54
PRK14295389 chaperone protein DnaJ; Provisional 99.54
PRK14284391 chaperone protein DnaJ; Provisional 99.53
PRK14301373 chaperone protein DnaJ; Provisional 99.53
PRK14297380 chaperone protein DnaJ; Provisional 99.53
KOG0717508 consensus Molecular chaperone (DnaJ superfamily) [ 99.52
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.52
PRK10767371 chaperone protein DnaJ; Provisional 99.52
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.51
PRK14281397 chaperone protein DnaJ; Provisional 99.51
PRK14292371 chaperone protein DnaJ; Provisional 99.5
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.5
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.49
PRK14293374 chaperone protein DnaJ; Provisional 99.49
PRK14300372 chaperone protein DnaJ; Provisional 99.49
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.48
PRK14290365 chaperone protein DnaJ; Provisional 99.47
PTZ003411136 Ring-infected erythrocyte surface antigen; Provisi 99.47
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.46
PRK14289386 chaperone protein DnaJ; Provisional 99.45
KOG0718546 consensus Molecular chaperone (DnaJ superfamily) [ 99.45
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 99.44
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.44
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.42
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.4
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.35
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 99.32
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.32
PHA03102153 Small T antigen; Reviewed 99.24
PRK01356166 hscB co-chaperone HscB; Provisional 99.17
PRK05014171 hscB co-chaperone HscB; Provisional 99.16
PRK00294173 hscB co-chaperone HscB; Provisional 99.09
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 99.06
PRK03578176 hscB co-chaperone HscB; Provisional 99.05
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.03
PTZ00100116 DnaJ chaperone protein; Provisional 98.88
PHA02624647 large T antigen; Provisional 98.84
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 98.83
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.79
PRK01773173 hscB co-chaperone HscB; Provisional 98.65
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.63
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 98.51
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 98.5
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.52
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 97.45
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 96.63
KOG0431453 consensus Auxilin-like protein and related protein 96.15
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 94.57
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 94.21
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 92.72
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 91.19
PF1371937 zinc_ribbon_5: zinc-ribbon domain 89.13
PF11926217 DUF3444: Domain of unknown function (DUF3444); Int 89.09
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 86.4
PF1371736 zinc_ribbon_4: zinc-ribbon domain 84.0
KOG20411189 consensus WD40 repeat protein [General function pr 83.98
PF1342844 TPR_14: Tetratricopeptide repeat 83.22
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 82.44
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 81.44
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 80.33
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain Back     alignment and domain information 
Probab=100.00  E-value=2.3e-83  Score=656.97  Aligned_cols=212  Identities=53%  Similarity=0.982  Sum_probs=203.0

Q ss_pred             CCCCCceeccCCCCCCCcCccccCCCCCCCEEEEecCCCCCccceeEEEEEeccCCceEEEEecccCCCCCccccccccC
Q 003686          482 DADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGS  561 (803)
Q Consensus       482 ~~~~~~~~~pd~dF~dFd~dR~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~~Fkl~iswLe~~~~~e~~~~~W~~~  561 (803)
                      ...+..|+||||||||||++|++++|++|||||+||+.||||||||||+||++.+||+|||+|||++|++++ +++|+++
T Consensus         3 ~~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~-~~~w~~~   81 (217)
T PF11926_consen    3 NSSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEE-EIRWEDE   81 (217)
T ss_pred             CCCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCccc-ceeeeec
Confidence            346789999999999999999999999999999999999999999999999987799999999999999985 8999999


Q ss_pred             CCceeeeeeEeCceeeeccCCceeEEEE-eEecCCccEEEecCCCcEeEEecCCCCCCCCCCCCCccceeeEEEEeccCC
Q 003686          562 GFPKTSGDFWRGKYEVYDSLNSFSHKVR-WAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYN  640 (803)
Q Consensus       562 ~lpv~CG~F~~~~~~~~~~~~~FSH~v~-~~~g~~~~y~IyPrkGEvWAlYk~Ws~~w~~~~~~~~~~~YdiVEVL~d~~  640 (803)
                      +|||+||+|++|++.++.++++|||+|. +..|.++.|+|||||||||||||||+++|+.+++++..|+|||||||+||+
T Consensus        82 ~~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~  161 (217)
T PF11926_consen   82 GLPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYS  161 (217)
T ss_pred             CCceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCC
Confidence            9999999999999999999999999985 777889999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEeeeeeCCcccceeeccCCC-ceEEecCCCccceeccccceeecCCCC
Q 003686          641 EKTGIGVVPLLKVPRFKTVFRQHLEQS-KRRTIPREEIFRFSHRVPSYLLTGQEG  694 (803)
Q Consensus       641 ~~~gv~V~~L~Kv~Gf~svF~~~~~~~-~~~~Ip~~el~rFSHqIPs~rltg~e~  694 (803)
                      ++.||.|+||+||+||+|||+|..+.+ .++.||++||+|||||||||||||+|+
T Consensus       162 ~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~  216 (217)
T PF11926_consen  162 EEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEG  216 (217)
T ss_pred             ccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccC
Confidence            999999999999999999999997665 689999999999999999999999996

This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13717 zinc_ribbon_4: zinc-ribbon domain Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 4e-11
2kqx_A73 Nmr Structure Of The J-Domain (Residues 2-72) In Th 7e-11
2ctp_A78 Solution Structure Of J-Domain From Human Dnaj Subf 1e-09
2ej7_A82 Solution Structure Of The Dnaj Domain Of The Human 1e-09
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 2e-09
2och_A73 J-domain Of Dnj-12 From Caenorhabditis Elegans Leng 1e-08
2lo1_A71 Nmr Structure Of The Protein Bc008182, A Dnaj-Like 3e-08
1hdj_A77 Human Hsp40 (Hdj-1), Nmr Length = 77 4e-08
2cug_A88 Solution Structure Of The J Domain Of The Pseudo Dn 5e-08
2ctr_A88 Solution Structure Of J-Domain From Human Dnaj Subf 6e-08
1xbl_A107 Nmr Structure Of The J-Domain (Residues 2-76) In Th 2e-07
1bq0_A103 J-Domain (Residues 1-77) Of The Escherichia Coli N- 2e-07
2o37_A92 J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S 4e-07
1bqz_A77 J-Domain (Residues 1-77) Of The Escherichia Coli N- 7e-07
1wjz_A94 Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P 1e-06
2ys8_A90 Solution Structure Of The Dnaj-Like Domain From Hum 4e-06
2l6l_A155 Solution Structure Of Human J-Protein Co-Chaperone, 6e-06
2lgw_A99 Solution Structure Of The J Domain Of Hsj1a Length 1e-05
2dn9_A79 Solution Structure Of J-Domain From The Dnaj Homolo 8e-05
2ctw_A109 Solution Structure Of J-Domain From Mouse Dnaj Subf 1e-04
3apq_A210 Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt 7e-04
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 66  DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
           D+Y +LGV+P  D +TI+  YR+LA   HPD S    AEA F+ L EAW +L D+ +R +
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 126 YDQ 128
           YDQ
Sbjct: 89  YDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 Back     alignment and structure
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 Back     alignment and structure
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 Back     alignment and structure
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 Back     alignment and structure
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 Back     alignment and structure
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 Back     alignment and structure
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 Back     alignment and structure
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 Back     alignment and structure
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 Back     alignment and structure
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 Back     alignment and structure
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 Back     alignment and structure
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 Back     alignment and structure
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94 Back     alignment and structure
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90 Back     alignment and structure
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155 Back     alignment and structure
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 Back     alignment and structure
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 Back     alignment and structure
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 Back     alignment and structure
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 7e-19
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 1e-17
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 2e-17
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 4e-17
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 5e-17
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 6e-17
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 2e-16
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 3e-16
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 3e-16
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 7e-16
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 1e-15
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 2e-15
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 3e-15
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 3e-15
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 4e-15
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 5e-15
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 6e-15
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 6e-15
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 1e-14
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 1e-14
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-14
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 7e-14
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 2e-11
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 8e-11
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 3e-10
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 3e-10
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 3e-10
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 1e-09
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 2e-08
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 3e-08
2guz_A71 Mitochondrial import inner membrane translocase su 6e-08
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 7e-08
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 2e-06
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
 Score = 80.9 bits (200), Expect = 7e-19
 Identities = 25/74 (33%), Positives = 38/74 (51%)

Query: 54  HISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEA 113
              A +RI    D + +LGV+P A  + +   YRKLA+++HPDK  + G+E AF+ +  A
Sbjct: 16  QADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNA 75

Query: 114 WNILSDKSKRLDYD 127
              L    K     
Sbjct: 76  RTALLKNIKSGPSS 89
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 803
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 5e-13
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 2e-11
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 5e-11
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 7e-11
d1fafa_79 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 3e-10
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 4e-10
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 1e-08
d1gh6a_114 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 1e-05
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 66  DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGA-------EAAFQILTEAWNILS 118
           DWY +LG +P A+   ++ +Y+KL L+ HPDK ++             F  + +AW IL 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 119 DKSKRLDYDQKRNG 132
           ++  +  YD +R+G
Sbjct: 77  NEETKKKYDLQRSG 90
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query803
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.47
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.41
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.29
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.09
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.05
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.03
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 98.9
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.5e-14  Score=121.57  Aligned_cols=70  Identities=37%  Similarity=0.682  Sum_probs=65.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             7660789656999999999999999999839999999-579999999999999909914679865015876
Q 003686           64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR  133 (803)
Q Consensus        64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~-~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~  133 (803)
                      ..|||+||||+++|+.++||++||+|++++|||+++. +.++..|..|++||+||+||.+|..||..+...
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             88779980989996999999999999865023006897179999999988897028899999998768142
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure