Citrus Sinensis ID: 003707

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-
MDSTKTLPPVSAISSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRVFMN
ccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHcHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccHHHHccccccHHHHHHHHccccccHHHHHHHHHHccccc
cccccccccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHccccccHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHcc
mdstktlppvsaisSTTLSFlndnltnkEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFthvnvkltdlasasrspssvsdggvrakqiLGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAmnnnrrsnstqdsEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLsslgwppplsilassnpetrassevsnplftmrgdlkhQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPiavasqhhfskwtdkpEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEifpvyvdqldeesisgVQSQARISWLHLVDLMISFDKRIKSLVEQSGILfslqedgnlqkisslsvfcdrpdwlDIWAQIELADTLENlkhdvddernwkmkVQKGAllfgsedyrsptvsSAFLQRLSSVVDrcrslptvsLRSRFLRLAGAPVIQKFLDCVLLRCQEAegltaltdedgllkvANCVNAAHYFESVLREWCEDVFFLEMALdqdnqletslsdnsrsewpvggsrsgiFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILmsnakfydggvvrfgcDMEVLFGVFRAwclrpegffpktsEGLKLLKMREEQLqggvlggekwmkqSGITHLSVAEAEKIeknrvfmn
mdstktlppvsaissttlSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLtdlasasrspssvsdggvraKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVssamnnnrrsnstqdseDMRLLAIKALKQAEDILtsvtktrpqwARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQhhfskwtdkpeFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKhdvddernwkMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLtaltdedgLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLetslsdnsrsewpvggsrsgifDEEIKKLEEFRTEWVEKISVVIlrgfdalsrdYVKNRRqwqekseenwsVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHlsvaeaekieknrvfmn
MDSTKTLPPVSAISSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTdlasasrspssvsdggvrAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVssamnnnrrsnsTQDSEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRAllsslgwppplsilASSNPETRASSEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMReeqlqggvlggeKWMKQSGITHLSVAEAEKIEKNRVFMN
*******************FLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDL*******************ILGEELPALAKEVARVDMVRAYAETALKLDSLVGDI************************LLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPL*******************LFTMRGDLKHQYCENFLALCRLQEL*************RELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMAL*******************************IKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHL****************
****************TLSFLNDNLTNKEYHARAARLASE*************************************************************************ALAKEVARVDMVRAYAETALKLDSLVGDIEDA***********************AIKALKQAEDILT**TK**PQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPP***********************TMRGDLKHQYCENFLALCRL*********************HQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQ*************LLKVANCVNAAHYFESVLREWCEDVFFLEMALDQ************************IFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYV********************VGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKM**************WMKQSGITHLSVAEAEKIEKNRVFM*
**********SAISSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLA*************VRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMN***********EDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILAS**********VSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDN*******************RSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVK***********NWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRVFMN
****KTLPPVSAISSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASR***********AKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSIL***********EVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLET***************RSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRR********NWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRVFMN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSTKTLPPVSAISSTTLSFLNDNLTNKEYHARAARLxxxxxxxxxxxxxxxxxxxxxLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRVFMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query801 2.2.26 [Sep-21-2011]
Q6NUQ1792 RAD50-interacting protein yes no 0.604 0.611 0.227 4e-19
Q8BZ36792 RAD50-interacting protein yes no 0.515 0.521 0.237 2e-17
Q9VS46724 RINT1-like protein OS=Dro yes no 0.509 0.563 0.225 7e-13
>sp|Q6NUQ1|RINT1_HUMAN RAD50-interacting protein 1 OS=Homo sapiens GN=RINT1 PE=1 SV=1 Back     alignment and function desciption
 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 134/588 (22%), Positives = 248/588 (42%), Gaps = 104/588 (17%)

Query: 207 MLRPQAIADHRALLSSLGWP---PPLS-ILASSNPETRASSEVSNPLFTMRGDLKHQYCE 262
           +L+ +  +D   +L+ L WP   PP S  +  S P +  + E+ + L T+          
Sbjct: 223 ILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPAS--APEIYSYLETL---------- 270

Query: 263 NFLALCRLQELQRQ----RKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHF----- 313
                C+L +LQ       + +QL       A    +  I+ ++ P+    ++HF     
Sbjct: 271 ----FCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLTPLQKRFRYHFRGNRQ 326

Query: 314 SKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVG--YSCREEWISAMVTALLTY 371
           +    KPE+    V     ++ + +DE +QP++D+   VG   + R E+   ++  +L  
Sbjct: 327 TNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDK---VGSLVNARLEFSRGLMMLVLEK 383

Query: 372 LAKEIFP--VYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFS--- 426
           LA +I P  +Y D L               + HLVD ++ F++ + S+    G   S   
Sbjct: 384 LATDI-PCLLYDDNL---------------FCHLVDEVLLFERELHSVHGYPGTFASCMH 427

Query: 427 -LQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLF 485
            L E+   Q+                W  +E    L+ +   +  E  W   V +   + 
Sbjct: 428 ILSEETCFQR----------------WLTVERKFALQKMDSMLSSEAAW---VSQYKDIT 468

Query: 486 GSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEA 545
             ++ + P  +  F+  L  + DR ++LPT S + +FL L      +  +D   +R    
Sbjct: 469 DVDEMKVPDCAETFMTLLLVITDRYKNLPTASRKLQFLELQ-----KDLVDDFRIR---- 519

Query: 546 EGLTALTDEDGL----LKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDN 601
             LT +  E+       +    +NA +Y  +VL +W ++VFFL++   Q   LE    +N
Sbjct: 520 --LTQVMKEETRASLGFRYCAILNAVNYISTVLADWADNVFFLQL---QQAALEVFAENN 574

Query: 602 SRSEWPVG---GSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQW-- 656
           + S+  +G      S +FD+ I  LE  + + + +    + R     ++ Y K R  W  
Sbjct: 575 TLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKER--WLS 632

Query: 657 --QEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILM 714
              +  +   S+S      L  L+  +  +E  L    F + W+ L   +D  +++ I++
Sbjct: 633 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 692

Query: 715 SNAKFYDGGVVRFGCDM-EVLFGVFRAWCLRPEGFFPKTSEGLKLLKM 761
           +N  F +GG  +   DM   LF +F  +C RPE +F    E   +L +
Sbjct: 693 AN-HFNEGGAAQLQFDMTRNLFPLFSHYCKRPENYFKHIKEACIVLNL 739
Involved in regulation of membrane traffic between the Golgi and the endoplasmic reticulum. May play a role in cell cycle checkpoint control. Essential for telomere length control.
Homo sapiens (taxid: 9606)
>sp|Q8BZ36|RINT1_MOUSE RAD50-interacting protein 1 OS=Mus musculus GN=Rint1 PE=2 SV=2 Back     alignment and function description
>sp|Q9VS46|RINT1_DROME RINT1-like protein OS=Drosophila melanogaster GN=CG8605 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query801
225456727800 PREDICTED: RINT1-like protein-like [Viti 0.971 0.972 0.720 0.0
147810884 1318 hypothetical protein VITISV_022021 [Viti 0.971 0.590 0.720 0.0
255540979799 conserved hypothetical protein [Ricinus 0.995 0.997 0.683 0.0
224124062804 predicted protein [Populus trichocarpa] 0.986 0.982 0.686 0.0
356510640796 PREDICTED: RINT1-like protein-like [Glyc 0.991 0.997 0.662 0.0
356527413796 PREDICTED: RINT1-like protein-like [Glyc 0.988 0.994 0.656 0.0
449495762784 PREDICTED: RINT1-like protein-like [Cucu 0.968 0.989 0.635 0.0
449438621784 PREDICTED: RINT1-like protein-like [Cucu 0.968 0.989 0.631 0.0
357505407801 RAD50-interacting protein [Medicago trun 0.987 0.987 0.638 0.0
20260548795 putative protein [Arabidopsis thaliana] 0.986 0.993 0.610 0.0
>gi|225456727|ref|XP_002268222.1| PREDICTED: RINT1-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1147 bits (2966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/781 (72%), Positives = 649/781 (83%), Gaps = 3/781 (0%)

Query: 20  FLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTH 79
           FLN     KE   RA  L SEL+ +C  LDQ+L++LNR LE+ L  YA  ++ +  LF +
Sbjct: 20  FLNKEFHRKEDLIRATHLVSELQKRCGDLDQNLIDLNRTLEATLLAYAFHSNGLHDLFRN 79

Query: 80  VNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLV 139
           +N++LT L S +   S    G  RA Q+L EELPALAKEVARV+ VR YAETALKLDSLV
Sbjct: 80  INLQLTRLNSTTCFSSDGGGGEGRAGQLLAEELPALAKEVARVETVRMYAETALKLDSLV 139

Query: 140 GDIEDAVSSAMNNN-RRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVD 198
           GDIEDAVSS MN N ++  ST  SE+MRL A+KALK  ED+LTSVTKTRPQWARLV+AVD
Sbjct: 140 GDIEDAVSSTMNRNLKKHASTHSSEEMRLHALKALKLTEDVLTSVTKTRPQWARLVSAVD 199

Query: 199 HRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFTMRGDLKH 258
            RVDRALA+LRPQAIADHR LL+SLGWPPPLS L +SN +TR SSEV NPLFTM+GDLKH
Sbjct: 200 QRVDRALAILRPQAIADHRTLLASLGWPPPLSTL-NSNLDTRKSSEVLNPLFTMQGDLKH 258

Query: 259 QYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTD 318
           QYCENFL+LC LQELQR+RK RQLEG+ RE+ALHQPLW IEELVNPI++A Q HFSKW D
Sbjct: 259 QYCENFLSLCSLQELQRRRKYRQLEGYYREIALHQPLWVIEELVNPISLAFQRHFSKWID 318

Query: 319 KPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFP 378
           KPEFIF LVYK+TRDYVDSMDELLQPLVDEA+L GYSCREEWISAMVT+L+ YLAKEIFP
Sbjct: 319 KPEFIFALVYKVTRDYVDSMDELLQPLVDEAMLAGYSCREEWISAMVTSLVIYLAKEIFP 378

Query: 379 VYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISS 438
            YV QLDEES++GVQSQARI+WLHLVDLMI+FDKR++S++  SG+L  LQEDGNLQKISS
Sbjct: 379 SYVGQLDEESVTGVQSQARIAWLHLVDLMITFDKRVQSMLAHSGLLVFLQEDGNLQKISS 438

Query: 439 LSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSA 498
           LSVFCDRPDWLD+WA+IEL D L+ LK +++D +NW MKVQ   LL G EDYRSP +SS 
Sbjct: 439 LSVFCDRPDWLDLWAKIELDDVLDKLKLEMEDRKNWTMKVQGAVLLPGPEDYRSPAISSV 498

Query: 499 FLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLL 558
           FLQRLS+VVDRCR+LP+VSL SRF RL+GAP+I KFLDC+LLRCQEAEGLTALTD+D L+
Sbjct: 499 FLQRLSAVVDRCRALPSVSLSSRFARLSGAPIIHKFLDCILLRCQEAEGLTALTDDDALI 558

Query: 559 KVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDE 618
           KV N +NAA YFESVL+EWCEDVFFLEM L + +QL T +  NS S  P+ G  SGIFD+
Sbjct: 559 KVTNSINAARYFESVLKEWCEDVFFLEMGLHEGDQLGTVVGVNSFSR-PIEGPGSGIFDD 617

Query: 619 EIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQ 678
           EI+KLE+FR EWV K+SVV+ RGFDA  RDY+KNR+QWQEK EE W VS+ L+GALDYLQ
Sbjct: 618 EIEKLEKFRLEWVGKLSVVLSRGFDARCRDYMKNRKQWQEKVEEGWMVSKSLLGALDYLQ 677

Query: 679 GKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVF 738
           GKMSI+EGSLNA+DF+ VWRSLA  VDRL+F GILMSN KFYDGGV RF CD+EVLFGVF
Sbjct: 678 GKMSILEGSLNAIDFVGVWRSLAAHVDRLIFSGILMSNVKFYDGGVERFRCDLEVLFGVF 737

Query: 739 RAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRV 798
           RAWC+RPEGFFPK SEGLKLLKM E+QLQ     GEKWM ++GI HLSVAEAEKI KNRV
Sbjct: 738 RAWCMRPEGFFPKASEGLKLLKMGEDQLQDYSAAGEKWMVENGIRHLSVAEAEKIVKNRV 797

Query: 799 F 799
           F
Sbjct: 798 F 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147810884|emb|CAN67279.1| hypothetical protein VITISV_022021 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540979|ref|XP_002511554.1| conserved hypothetical protein [Ricinus communis] gi|223550669|gb|EEF52156.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224124062|ref|XP_002330095.1| predicted protein [Populus trichocarpa] gi|222871229|gb|EEF08360.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510640|ref|XP_003524045.1| PREDICTED: RINT1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356527413|ref|XP_003532305.1| PREDICTED: RINT1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449495762|ref|XP_004159937.1| PREDICTED: RINT1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449438621|ref|XP_004137086.1| PREDICTED: RINT1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357505407|ref|XP_003622992.1| RAD50-interacting protein [Medicago truncatula] gi|355498007|gb|AES79210.1| RAD50-interacting protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|20260548|gb|AAM13172.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query801
TAIR|locus:2100327795 MAG2 "AT3G47700" [Arabidopsis 0.986 0.993 0.579 3.1e-241
TAIR|locus:2201771804 AT1G08400 "AT1G08400" [Arabido 0.911 0.907 0.341 2.4e-108
UNIPROTKB|F1NCP7776 RINT1 "Uncharacterized protein 0.365 0.377 0.247 1.3e-20
MGI|MGI:1916233792 Rint1 "RAD50 interactor 1" [Mu 0.367 0.371 0.254 6.3e-18
UNIPROTKB|Q08DT8792 RINT1 "Uncharacterized protein 0.367 0.371 0.251 2.2e-17
RGD|1560433734 Rint1 "RAD50 interactor 1" [Ra 0.367 0.400 0.251 3.7e-17
UNIPROTKB|F1SB37792 RINT1 "Uncharacterized protein 0.367 0.371 0.248 1.8e-16
UNIPROTKB|Q6NUQ1792 RINT1 "RAD50-interacting prote 0.367 0.371 0.248 1.8e-14
FB|FBgn0035762724 CG8605 [Drosophila melanogaste 0.302 0.334 0.242 5.8e-10
ASPGD|ASPL0000073983738 AN4884 [Emericella nidulans (t 0.410 0.445 0.246 1e-06
TAIR|locus:2100327 MAG2 "AT3G47700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2325 (823.5 bits), Expect = 3.1e-241, P = 3.1e-241
 Identities = 465/803 (57%), Positives = 573/803 (71%)

Query:     1 MDSTKTLPPVSAISSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLE 60
             M++ K LP VS+ S++  SFL+         + +  L SEL+T+ S LDQ L  LNR LE
Sbjct:     1 MEAIKPLPQVSSFSASVFSFLDGRFKESTDLSHSTGLVSELQTEISELDQRLAGLNRQLE 60

Query:    61 SKLSVYASFTDRVSGLFTHVNVKLTXXXXXXXXXXXXXXXXX---XAKQILGEELPALAK 117
             S L+ YASF+DRV GLF  VN KL                       + + GE+LP+LAK
Sbjct:    61 SGLAAYASFSDRVGGLFFEVNAKLADLSSSTSVTRSASDSGKEEEATEHVAGEDLPSLAK 120

Query:   118 EVARVDMVRAYAETALKLDSLVGDIEDAVXXXXXXXXXXXXTQDSEDMRLLAIKALKQAE 177
             EVA+V+ VRAYAETALKLD+LVGDIEDAV            +   E++RL AIK LK  E
Sbjct:   121 EVAQVESVRAYAETALKLDTLVGDIEDAVMSSLNKNLRTSRSSGFEEVRLHAIKTLKTTE 180

Query:   178 DILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRAXXXXXXXXXXXXXXASSNP 237
             +IL+SV K  P+WARLV+AVDHRVDRALAM+RPQAIAD+RA               S++ 
Sbjct:   181 EILSSVAKRHPRWARLVSAVDHRVDRALAMMRPQAIADYRALLSSLRWPPQLSTLTSASL 240

Query:   238 ETRASSEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELAL-HQPLW 296
             +++ S  V NPLF M G LK QYC +F ALC LQ LQ QRKSRQL  H  E  L HQPLW
Sbjct:   241 DSK-SENVQNPLFNMEGSLKSQYCGSFHALCSLQGLQLQRKSRQLGIHKGENVLFHQPLW 299

Query:   297 AIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSC 356
             AIEELVNP+ VASQ HF+KW++KPEFIF LVYKITRDYVDSMDELLQPLVDEA L GYSC
Sbjct:   300 AIEELVNPLTVASQRHFTKWSEKPEFIFALVYKITRDYVDSMDELLQPLVDEAKLAGYSC 359

Query:   357 REEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKS 416
             REEW+SAMV++L  YL KEIFP+YV QLDE + + ++S+A++SWLHL+DLMISFDKR++S
Sbjct:   360 REEWVSAMVSSLSLYLVKEIFPIYVGQLDEANETDLRSEAKVSWLHLIDLMISFDKRVQS 419

Query:   417 LVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKM 476
             LV QSGIL SLQEDGNL +ISSLSVFCDRPDWLD+WA+IEL + L   K ++D++RNW  
Sbjct:   420 LVSQSGIL-SLQEDGNLLRISSLSVFCDRPDWLDLWAEIELDERLVKFKEEIDNDRNWTA 478

Query:   477 KVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLD 536
             KVQ   L+  S  YR P +SS FLQ LSS+++R +S+P + LR+RFLRLA +P I KFLD
Sbjct:   479 KVQD-ELISSSNVYRPPIISSIFLQHLSSIIERSKSVPALYLRARFLRLAASPTIHKFLD 537

Query:   537 CVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLET 596
             C+LLRCQ+A+GLTALT+ + L+KV+N +NA HY ESVL EW EDVFFLEM   Q +  E 
Sbjct:   538 CLLLRCQDADGLTALTENNDLIKVSNSINAGHYIESVLEEWSEDVFFLEMGTGQHDPQEV 597

Query:   597 SLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQW 656
                +N     P      GIF EE +KLE+FR EW+ K+SVVILRGFDA  R+Y+KNR+QW
Sbjct:   598 PGLENFTE--P----SEGIFGEEFEKLEKFRLEWINKLSVVILRGFDARIREYIKNRKQW 651

Query:   657 QEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSN 716
             QEK ++ W+VS  LVGALDYLQGK SIIE +LN  DF  +WR+LA+ +D+L F  ILM+N
Sbjct:   652 QEKKDKEWTVSRALVGALDYLQGKTSIIEENLNKADFTAMWRTLASEIDKLFFNSILMAN 711

Query:   717 AKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMRXXXXXXXXXXXXKW 776
              KF + GV R   DMEVL+GVFR WC+RPEGFFPK SEGL LLKM             KW
Sbjct:   712 VKFTNDGVERLKVDMEVLYGVFRTWCVRPEGFFPKLSEGLTLLKMEEKQVKDGLSRGDKW 771

Query:   777 MKQSGITHLSVAEAEKIEKNRVF 799
             ++++ I +LS AEA+K+ K+RVF
Sbjct:   772 LRENRIRYLSEAEAKKVAKSRVF 794
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IMP
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP
GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=IDA
TAIR|locus:2201771 AT1G08400 "AT1G08400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCP7 RINT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1916233 Rint1 "RAD50 interactor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DT8 RINT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1560433 Rint1 "RAD50 interactor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB37 RINT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NUQ1 RINT1 "RAD50-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0035762 CG8605 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073983 AN4884 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query801
pfam04437483 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family 1e-138
>gnl|CDD|218088 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family Back     alignment and domain information 
 Score =  418 bits (1077), Expect = e-138
 Identities = 171/525 (32%), Positives = 251/525 (47%), Gaps = 64/525 (12%)

Query: 296 WAIEELVNPIAVASQHHFS-----KWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEAL 350
             IE LVNP  +  ++HFS        DKPE+ F  V K  R+  D + E LQP  D+A 
Sbjct: 1   LPIEVLVNPFRLRFKYHFSGNKQTNRLDKPEWYFAFVLKYIRENGDFLYECLQPFFDKAG 60

Query: 351 LVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISF 410
           LVGYS REE+I+ ++  L   LA  +                 SQ      HL+D +++F
Sbjct: 61  LVGYSAREEFINGLLQPLREKLAHTLP--------------SISQDLKLLSHLIDEILAF 106

Query: 411 DKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDD 470
           DK ++S     G+             S LSV   R DW + W +IE    L+ L+  ++ 
Sbjct: 107 DKELRSSFNYPGLP-----------GSVLSVLI-REDWFEKWLKIEKEFALDKLEAILEA 154

Query: 471 ERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPV 530
           E  W  + Q   ++ G+++ + P  +  F + L ++ +R R LP++  + RFLR     +
Sbjct: 155 EDAW--EPQYEGVITGNDELKPPKCAERFNKLLETITERYRPLPSLDQQLRFLRDVQLTL 212

Query: 531 IQKFLDCVLLRCQEAEGLT-----ALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLE 585
             +F + +L R +E    T     +LTD+  L +    +NAA+Y ES L++W +DVFFL+
Sbjct: 213 CDQFFERLLSRYEEYLLSTSTLDESLTDDAELERTCRKLNAANYLESKLKDWSDDVFFLQ 272

Query: 586 MALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDAL 645
            A   D    TS S  +            +FDE I  LE  R +    I   +++GF A 
Sbjct: 273 EASLGDIANRTSSSYGA------------LFDETINSLERLRLDSEGSIVHRLVKGFKAA 320

Query: 646 SRDYVKNRRQWQEKSE----ENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLA 701
            R+Y K    W   S     E+ S S  LV AL YL+ ++S +E  L    F+ +WR L 
Sbjct: 321 LRNYFK-ISTWSSLSSTSALESLSPSAELVEALRYLRRRISKLERLLPLAIFLRIWRQLL 379

Query: 702 TGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKM 761
             +D  +   ILM N KF +GG  +F  DM  LF VF  +C+RPE FF K SEGLKLL +
Sbjct: 380 LSLDTYIISSILMLN-KFSEGGAAQFHFDMRNLFEVFSLYCMRPENFFKKLSEGLKLLNL 438

Query: 762 REEQLQGGVLG--------GEKWMKQSGITHLSVAEAEKIEKNRV 798
           +   L    L             + + GI  L+  EA  +   RV
Sbjct: 439 KYGSLLSEFLDSEYIKNESFRSLLAELGIETLTDTEALDVLYRRV 483

This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control, as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport. Length = 483

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 801
KOG2218737 consensus ER to golgi transport protein/RAD50-inte 100.0
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 100.0
KOG2180793 consensus Late Golgi protein sorting complex, subu 99.03
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 98.71
PF07393710 Sec10: Exocyst complex component Sec10; InterPro: 98.14
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 98.13
KOG0412773 consensus Golgi transport complex COD1 protein [In 98.08
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 97.45
PF06046566 Sec6: Exocyst complex component Sec6; InterPro: IP 96.92
KOG1328 1103 consensus Synaptic vesicle protein BAIAP3, involve 96.44
PF14923450 CCDC142: Coiled-coil protein 142 96.11
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 95.18
KOG3745763 consensus Exocyst subunit - Sec10p [Intracellular 94.92
KOG3691982 consensus Exocyst complex subunit Sec8 [Intracellu 92.02
KOG2347934 consensus Sec5 subunit of exocyst complex [Intrace 90.48
PF14906321 DUF4495: Domain of unknown function (DUF4495) 86.57
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 82.87
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 80.62
PF10474234 DUF2451: Protein of unknown function C-terminus (D 80.03
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-102  Score=874.08  Aligned_cols=724  Identities=30%  Similarity=0.469  Sum_probs=610.9

Q ss_pred             CCCCCCCCCchhhhhhhhccCCHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Q 003707            6 TLPPVSAISSTTLSFLNDNLTNKEYHARAA-RLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKL   84 (801)
Q Consensus         6 ~~~~~~~~~~~~~~~ld~~~~s~~dl~~~~-~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l   84 (801)
                      ++|.+++.+.++..|+|++|....|+.... .++++++.+|++|.+.|.+++.++..-..+|++.++.+......++..+
T Consensus         1 ~~~~~s~~~~~~~~~~~~~~~~~~D~L~r~~~~~s~l~~~~seL~q~l~~L~~~~~~n~~~~~s~~~~~q~~~~ev~~~l   80 (737)
T KOG2218|consen    1 MLAELSEMPLRILAFLDGEFCDGIDLLLRASDLVSELEKELSELNQRLQNLKERDPSNLTTYLSAEQGAQQDIEEVGAEL   80 (737)
T ss_pred             CCCccccchHHHHHhccccccccHHHHhccccchhhHHHHHHHHHHHHhhhcccCcccchhHhhHHHHhhhhHHHHhhhH
Confidence            389999999999999999999887776554 4999999999999999999999999988889988888887777777666


Q ss_pred             hhhhhhccCCCCCCCc--chhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCC
Q 003707           85 TDLASASRSPSSVSDG--GVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDS  162 (801)
Q Consensus        85 ~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~  162 (801)
                      +.|....  +...++.  .+..++...+.+ +..+++.++|..+.|+..+++++.+++++++++....+++.   +    
T Consensus        81 e~L~~l~--~~~~~~~~~~e~v~~~~~e~~-~~~~~V~~le~~k~yl~~~~~l~t~~~~l~nsi~~~~~k~~---~----  150 (737)
T KOG2218|consen   81 EKLQRLE--RALYGDLQLEEQVLKVAKEIL-QMRDEVLKLEVFKQYLGTLLELDTLLFSLENSIFLSASKAL---F----  150 (737)
T ss_pred             HHHHHHH--HHhhHHHHHHHHHhhccchhh-HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHhhcccchhh---h----
Confidence            6555541  0011111  112222245777 88999999999999999999999999999997655543221   1    


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccCCCccccCc
Q 003707          163 EDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRAS  242 (801)
Q Consensus       163 ~~~al~a~~~L~~~~~~~~~~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~  242 (801)
                       -..+..+..++++++++  |...++-|..|+..+++|+++||+.|+++.+++++++|.+++||  ++++++.+.+    
T Consensus       151 -~t~~s~~eE~n~iee~~--v~~~h~i~~~l~~s~~~r~~k~~~~l~~~~~~~feaiLssl~Wp--~a~~~s~~~~----  221 (737)
T KOG2218|consen  151 -STSFSLFEEINNIEEIL--VARLHLIWRKLFRSFDRRTVKWHKLLRKQKSSDFEAILSSLRWP--LATLMSESVG----  221 (737)
T ss_pred             -hhHHhhhhhcccchHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcchhhhccC----
Confidence             22334566688888754  88889999999999999999999999999999999999999999  5554432111    


Q ss_pred             cccCCcccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCccccccCCchhhHHHhHhhHHHhcccccc-----ccc
Q 003707          243 SEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFS-----KWT  317 (801)
Q Consensus       243 ~~~~~pl~~~~~~~~~~~~~~f~~L~~LQ~~~~~~~~~~~~~~~~~~~~~~~Lw~i~~Lv~P~~~RF~YHF~-----Nrl  317 (801)
                        +..||+.|   ....|+..|..|-+.+.....|.+-+   +. .+..+|++||+++|++|+.+||+|||+     ||+
T Consensus       222 --l~s~l~~~---~k~~f~~sfl~l~~~~~~~~~r~~l~---~~-~es~~~~lw~~q~L~~P~~~rF~YHF~~~rqTn~l  292 (737)
T KOG2218|consen  222 --LKSPLREM---LKSLFCQSFLFLSEETLQGESRRPLQ---YF-KESVEPVLWATQVLLTPYAKRFRYHFMSDRQTNRL  292 (737)
T ss_pred             --ccchhHHH---HHHHHHHHHHhhhhhcccchhhchhh---hc-CCCCCchhHHHHHHHHHHHhhhheeeccccccccc
Confidence              12366555   78899999999943332222222221   11 234489999999999999999999999     999


Q ss_pred             cCccchHHHHHHHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccchhh
Q 003707          318 DKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQAR  397 (801)
Q Consensus       318 dKPEw~f~~vl~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~i~p~l~~~~~d~~~~~~~~~~~  397 (801)
                      +||||||++|++|+++|..++++.+||++|++|+.+++++++||++|++++.+|+..+| +.+.             +..
T Consensus       293 sKPEwff~~vlk~~ren~~~~d~~~qp~~D~agl~~~~~r~efi~~lvql~kekl~~~I-~q~d-------------~k~  358 (737)
T KOG2218|consen  293 SKPEWFFEFVLKVLRENRESFDELFQPLVDKAGLLSVNARLEFINGLVQLAKEKLAVDI-SQLD-------------QKR  358 (737)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCHHHHHHHHHHHHHHHHhhhhh-hhHH-------------hhh
Confidence            99999999999999999999999999999999999999999999999999999999988 5442             234


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcccccccCCccCcccceEeecCCchHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 003707          398 ISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMK  477 (801)
Q Consensus       398 sl~~HlIdE~l~FD~~Lr~~~~y~~~~~~~~~~~~w~gls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i~  477 (801)
                      .+|+|||||+++||++|++.|+|||.           +++++++|| +|+|+++|+++|+++|..+++.|++++.||.+.
T Consensus       359 ~l~~HLvdq~l~Fdkrl~s~f~Y~~t-----------~~s~i~~l~-~~~~~~~W~~iEle~a~~k~k~~~~n~~aW~~~  426 (737)
T KOG2218|consen  359 NLFLHLVDQVLAFDKRLQSSFGYPGT-----------FLSLISLLS-QPMWLKKWLKIELEEALRKFKMIIKNEVAWVDG  426 (737)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcc-----------hhhhhhHhc-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh
Confidence            79999999999999999999999875           237889999 799999999999999999999999999999998


Q ss_pred             cccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHHHHHHHHHHHHHHHhhhhhhcccCchhH
Q 003707          478 VQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGL  557 (801)
Q Consensus       478 ~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~lLd~f~~rL~~~~~a~~~~~~~~g~~~l  557 (801)
                      +++ .  ++..++|+|.||++|++++..|++||..||.+.+|++|++.++..+.+.|+ .+..+++.+++.++..     
T Consensus       427 s~~-~--S~~~~~kiP~~a~~F~~ll~~i~dr~k~lp~~~~~~qFl~s~~~~l~~~~r-~ll~~~~~~e~~~s~~-----  497 (737)
T KOG2218|consen  427 SKD-L--SDENDLKIPDCAERFRDLLSAIIDRYKNLPALDYQLQFLRSQLDILRQEFR-ILLTRYKEFELSKSLH-----  497 (737)
T ss_pred             hhh-h--hhhhhhccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccc-----
Confidence            876 2  556799999999999999999999999999999999999999766555554 4556677777654322     


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003707          558 LKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVV  637 (801)
Q Consensus       558 ~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~  637 (801)
                      .++|.+.|+.+||+.+|++||+++||++||++..+   ..+.     -+++.+..+|+|+++++.|+++..+|..+++.+
T Consensus       498 ~~li~~~n~VNyvervl~ews~nv~fl~l~~a~~d---~~v~-----~l~e~~~~ns~F~~~~~~leel~~~~~~~~iv~  569 (737)
T KOG2218|consen  498 GFLIAILNSVNYVERVLKEWSSNVVFLDLADAVED---EDVY-----MLHEATSGNSVFEEVSNFLEELMSTWMLKLIVH  569 (737)
T ss_pred             hhHHHhhhhHHHHHHHHHHHhcchhHHHHHHHhhc---cccc-----ccccccccchhHHHHHHHHHHHhhHHHHHHHHH
Confidence            68999999999999999999999999999998863   1111     112444556999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc-cccc-cccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003707          638 ILRGFDALSRDYVKNRRQ-WQEK-SEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMS  715 (801)
Q Consensus       638 v~~~~~~~lr~Y~~~~~~-w~~~-~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~  715 (801)
                      +.+++++.+++|++++|. |.++ +..+++||.++|++++.|++++..|+..|+|.+|..+||.++..||.|.|+.+++.
T Consensus       570 ~l~~~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~~~~l~~~idv~~~~e~il~  649 (737)
T KOG2218|consen  570 LLQNLKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAIWRNLQENIDVYVFEEIILK  649 (737)
T ss_pred             HHHhhHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence            999999999999997643 4432 23578899999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccCCChHH--HHHhhh-chHhHHHhhCCCccCHHHHHH
Q 003707          716 NAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQ--LQGGVL-GGEKWMKQSGITHLSVAEAEK  792 (801)
Q Consensus       716 n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~~--l~~~l~-~~~~~L~elgI~~Ls~~ea~~  792 (801)
                      |.+|+.+|+.||..|+.+|+++|++||.||+.+|++++|+|.+|+|..++  +++++. .++.+++++||+.|++.+|.+
T Consensus       650 ~~~f~~~~~~~f~~Da~~L~~~fs~yc~rp~~~f~~l~e~~~vL~l~e~~~~l~~~Ls~~~~~~le~~~i~~Ls~~di~~  729 (737)
T KOG2218|consen  650 NHKFESSGLFQFVHDAKRLLEVFSEYCVRPLLKFKSLRELVCVLKLEEGELRLKDALSRPGTKCLEELGIKYLSDQDIED  729 (737)
T ss_pred             hhhcCchHHHHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccHhhhhhhhcccHHHHHHHhhhhhcCHHHHHH
Confidence            88999999999999999999999999999999999999999999999996  556666 479999999999999999999


Q ss_pred             HHHhcccC
Q 003707          793 IEKNRVFM  800 (801)
Q Consensus       793 vL~rRv~~  800 (801)
                      +|+||||+
T Consensus       730 ~l~~rv~~  737 (737)
T KOG2218|consen  730 VLYRRVYG  737 (737)
T ss_pred             HHHHHhcC
Confidence            99999996

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex Back     alignment and domain information
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>PF14923 CCDC142: Coiled-coil protein 142 Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14906 DUF4495: Domain of unknown function (DUF4495) Back     alignment and domain information
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query801
3fhn_A706 Protein transport protein TIP20; TIP20P, vesicle t 5e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae} Length = 706 Back     alignment and structure
 Score =  257 bits (656), Expect = 5e-75
 Identities = 87/760 (11%), Positives = 211/760 (27%), Gaps = 124/760 (16%)

Query: 83  KLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDI 142
           +L       +   + +D  V   +++ +++  +   V  ++ +RA       L+ L    
Sbjct: 28  ELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQLRAKYGDLQILNKLEKVA 87

Query: 143 EDAVSSAMNNNRRSNSTQDSEDMRLL---------------AIKALKQAEDILTSVTKTR 187
                     ++  +  +  +++                   + ++      + ++    
Sbjct: 88  VQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFATVPQINNIDSQY 147

Query: 188 PQWARLVAAVDHRVDRALAMLRPQAI-ADHRALLSSLGWPPPLSILASSNPETRASSEVS 246
             + +L + V  + +  +               L    W        S           +
Sbjct: 148 AAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENST 207

Query: 247 NPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIA 306
                               L    E + Q    +             LW  + L N   
Sbjct: 208 KLY-------------QLSLLYLPLEEETQNGDSERPLSRSNNNQEPVLWNFKSLANNFN 254

Query: 307 VASQHHFS--KWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAM 364
           V   +HF     + K E  F  +     + +     +     +   L      E++I+ +
Sbjct: 255 VRFTYHFHATSSSSKIETYFQFLNDYLAENLYKCINIFHDDCNG--LTKPVIHEQFINYV 312

Query: 365 VTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGIL 424
           +  +   +   +F   +  L                + L+  +++ DK + +     G+ 
Sbjct: 313 LQPIRDKVRSTLFQNDLKTL----------------IVLISQILATDKNLLNSFHYHGLG 356

Query: 425 FSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALL 484
                           V     +  + W   E+        +   +  ++          
Sbjct: 357 L---------------VSLISDEVWEKWINYEVEMANRQFINITKNPEDF---------- 391

Query: 485 FGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRS------RFLRLAGAPVIQKFLDCV 538
                   P  S  F++ ++ + D       +              L    +   +LD +
Sbjct: 392 --------PKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCSLIFMNLTSSYLDYI 443

Query: 539 LLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSL 598
           L      E  T    E  L +    +   ++    ++    +  F+++     + + ++ 
Sbjct: 444 LTVDSLNETRT---KEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLT----DIVNSTE 496

Query: 599 SDNSRSEWPVGGSRSGIFDEEIKKLEE-FRTEWVEKISVVILRGFDALSRDYVKNRRQWQ 657
           S    S          +F       E+   T+    I   I +      R+Y K    W 
Sbjct: 497 SKKYNS----------LFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK-ISTWS 545

Query: 658 -------EKSEENWSVSEMLVGALDYLQGKMSIIEG-SLNAMDFIMVWRSLATGVDRLLF 709
                  E    +   S  LV +++ L+  ++ ++   +     + V   L   +     
Sbjct: 546 TLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFT 605

Query: 710 RGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGG 769
             IL  N KF   G+ +F  D + L  +                E +K+LK++ +     
Sbjct: 606 ESILKLN-KFNQNGLNQFLHDFKSLSSILSLPSHATNYKCMSLHELVKILKLKYDPNNQQ 664

Query: 770 VLGGE--------KWMKQSGITHLSVAEAEKIEKNRVFMN 801
            L  E           +   I +L   + +      ++ N
Sbjct: 665 FLNPEYIKTGNFTSLKEAYSIKYLKDTKIQDALYRIIYGN 704
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00