Citrus Sinensis ID: 003710

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-
Protein Sequence
MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEcccccccccccEEcccccc
Coil and Loop (DISEMBL)
matpaplaihshffnsnsptrrnpsqkqfkipetnptpsfetnarssksthihknqtitskksigprnitKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCegfkadyftYPFVIKACAGLLYLSEGEKVHGSlfksglnsdvYVCNSLIVMYMKLGCVECAErmfdempvrdtvswnsmiggycsvgdgVSSLVFFKEMqncglrydrFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMleddnlnpdciTIINLLPSCTKLgallegksihgyairkgflpnvALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDlwseplkpdamTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCgdlqtardVVSWNVIIMAYAIHGLGKISIQLFSEMrekgikpnesTFVSLLSSCSisgmvdegwnyfdsmrkdygivpgieHYGCIIDLLGRIGNLDQAKRFIeempsaptaRIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMyaeagrweDVEQIKAIMEKeglkkttgcsmfekngethrfinqdrshsktYLIYNVLDILLRKIGedfyihnvskfspahlmknraksphhhsVRLAISFGListsvgnpvlvrnntricEDCHSAVKKISEITkrelivrdpkcfhhfrngccscgdyw
Flexible Loop (DISEMBL)
matpaplaihshffnsnsptrrnpsqkqfkipetnptpsfetnarssksthihknqtitskksigprniTKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVlssaqdntgCYVLLSNMYAEAGRWEDVEQIKAIMekeglkkttgcSMFEKNGETHrfinqdrshsktYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSavkkiseitkrelivrdpkcfhhfrngccscgdyw
Low Complexity Region (SEG)
MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Disordered region (IsUnstruct)
************************************************************************************ESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLM********HHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDY*
Disordered Region (DISOPRED)
**T*AP*AIHSH*********************TNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Disordered Region (DISEMBL)
MATPAPLAIHSHFFNSN************KIPETNPTP**********************KKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMK********HSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Disordered Region (DISPRO)
MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	801	2.2.26 [Sep-21-2011]
O49619	804	Pentatricopeptide repeat-	yes	no	0.906	0.902	0.580	0.0
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.980	0.970	0.344	1e-147
O81767	823	Pentatricopeptide repeat-	no	no	0.936	0.911	0.355	1e-141
Q9M9E2	866	Pentatricopeptide repeat-	no	no	0.896	0.829	0.361	1e-138
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.892	0.820	0.352	1e-137
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.940	0.885	0.332	1e-131
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.887	0.798	0.345	1e-131
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.895	0.673	0.335	1e-125
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.896	0.906	0.341	1e-123
Q5G1T1	850	Pentatricopeptide repeat-	no	no	0.918	0.865	0.335	1e-123

>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/741 (58%), Positives = 534/741 (72%), Gaps = 15/741 (2%)

Query: 72  TRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFK 131
           TRAL+    S  ME A  LF++M+  D ++WNV+I+GF   GL+ EAV+F+ RMV  G K
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query: 132 ADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERM 191
           AD FTYPFVIK+ AG+  L EG+K+H  + K G  SDVYVCNSLI +YMKLGC   AE++
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 192 FDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCL 251
           F+EMP RD VSWNSMI GY ++GDG SSL+ FKEM  CG + DRFS +SALGA S     
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 252 KIGKEIHCQVIKSGLEM-DVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGG 310
           K+GKEIHC  ++S +E  DVMV TS++DMY K G V YAER+FN +  RNIVAWN M+G 
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307

Query: 311 YVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP 370
           Y  N    ++F C +KM E + L PD IT INLLP+     A+LEG++IHGYA+R+GFLP
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLP 363

Query: 371 NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLW 430
           ++ LETALIDMY   G LK  E +F  M EKN++SWN++IAAYV+NG+N  A+ELFQ+LW
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423

Query: 431 SEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQ 490
              L PD+ T ASILPAYAE  +LS+  +IH+ I K    SN  I NS+V+MYA CGDL+
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query: 491 TAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCS 541
            AR         DVVSWN IIMAYA+HG G+IS+ LFSEM    + PN+STF SLL++CS
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query: 542 ISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIW 601
           ISGMVDEGW YF+SM+++YGI PGIEHYGC++DL+GR GN   AKRF+EEMP  PTARIW
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603

Query: 602 GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661
           G+LL ASR + DI  AEFAA  +     DNTGCYVLL NMYAEAGRWEDV +IK +ME +
Sbjct: 604 GSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESK 663

Query: 662 GLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIG-EDFYIHNVSKFSPA 720
           G+ +T+  S  E  G++H F N DRSH  T  IY VLD++ R +G ED Y+H VS+  P 
Sbjct: 664 GISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPE 723

Query: 721 HLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI 780
            L+K+R+ SP  HSVRLA  FGLIST  G  V VRNNTRIC  CH  ++K S +T+RE++
Sbjct: 724 TLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIV 783

Query: 781 VRDPKCFHHFRNGCCSCGDYW 801
           V D K FHHF NG CSCG+YW
Sbjct: 784 VGDSKIFHHFSNGRCSCGNYW 804

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/808 (34%), Positives = 451/808 (55%), Gaps = 23/808 (2%)

Query: 4   PAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKS 63
           P P + H HF           S++ +        P+     R S    + +   +  K  
Sbjct: 15  PNPPSRHRHFL----------SERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNG 64

Query: 64  IGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHH 123
           +   +  +T+ +      GS++ A  +FE +      +++ +++GF       +A++F  
Sbjct: 65  LYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFV 124

Query: 124 RMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLG 183
           RM  +  +   + + +++K C     L  G+++HG L KSG + D++    L  MY K  
Sbjct: 125 RMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184

Query: 184 CVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALG 243
            V  A ++FD MP RD VSWN+++ GY   G    +L   K M    L+    +++S L 
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244

Query: 244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVA 303
           A+S    + +GKEIH   ++SG +  V + T+LVDMY KCG ++ A +LF+ +  RN+V+
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVS 304

Query: 304 WNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYA 363
           WN+M+  YV N +  E+    +KML D+ + P  ++++  L +C  LG L  G+ IH  +
Sbjct: 305 WNSMIDAYVQNENPKEAMLIFQKML-DEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363

Query: 364 IRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAM 423
           +  G   NV++  +LI MY     +     +FG +  + LVSWNAMI  + +NG+  +A+
Sbjct: 364 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 423

Query: 424 ELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY 483
             F  + S  +KPD  T+ S++ A AE++    +  IH ++ +  L  N++++ ++V MY
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMY 483

Query: 484 AKCG---------DLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFV 534
           AKCG         D+ + R V +WN +I  Y  HG GK +++LF EM++  IKPN  TF+
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL 543

Query: 535 SLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS 594
           S++S+CS SG+V+ G   F  M+++Y I   ++HYG ++DLLGR G L++A  FI +MP 
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603

Query: 595 APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654
            P   ++GA+L A + + ++  AE AA  +     D+ G +VLL+N+Y  A  WE V Q+
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663

Query: 655 KAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNV 714
           +  M ++GL+KT GCSM E   E H F +   +H  +  IY  L+ L+  I E  Y+ + 
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723

Query: 715 S-KFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISE 773
           +      + +K +  S   HS +LAISFGL++T+ G  + VR N R+C DCH+A K IS 
Sbjct: 724 NLVLGVENDVKEQLLST--HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISL 781

Query: 774 ITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           +T RE++VRD + FHHF+NG CSCGDYW
Sbjct: 782 VTGREIVVRDMQRFHHFKNGACSCGDYW 809

Arabidopsis thaliana (taxid: 3702)

>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/793 (35%), Positives = 449/793 (56%), Gaps = 43/793 (5%)

Query: 30  KIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSS-GSMESAC 88
           +I + +    + TN +S+K  H    + + SK+    +N+  +  L  L    G++  A 
Sbjct: 53  EIDDVHTLFRYCTNLQSAKCLHA---RLVVSKQ---IQNVCISAKLVNLYCYLGNVALAR 106

Query: 89  YLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVE-FHHRMVCEGFKADYFTYPFVIKACAGL 147
           + F+ +   D Y WN++I G+   G   E +  F   M+  G   DY T+P V+KAC  +
Sbjct: 107 HTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV 166

Query: 148 LYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMI 207
           +   +G K+H    K G   DVYV  SLI +Y +   V  A  +FDEMPVRD  SWN+MI
Sbjct: 167 I---DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 223

Query: 208 GGYCSVGDGVSSLVFFKEMQNCGLR-YDRFSLISALGAISIEGCLKIGKEIHCQVIKSGL 266
            GYC  G+   +L       + GLR  D  +++S L A +  G    G  IH   IK GL
Sbjct: 224 SGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278

Query: 267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRK 326
           E ++ V   L+D+Y + G +   +++F+ ++ R++++WN+++  Y +N   L + S  ++
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338

Query: 327 MLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKG-FLPNVALETALIDMYAGS 385
           M     + PDC+T+I+L    ++LG +   +S+ G+ +RKG FL ++ +  A++ MYA  
Sbjct: 339 M-RLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 397

Query: 386 GALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE-PLKPDAMTFASI 444
           G +     +F  +   +++SWN +I+ Y +NG   EA+E++  +  E  +  +  T+ S+
Sbjct: 398 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 457

Query: 445 LPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDV--------- 495
           LPA ++   L   M++H  + K GL  ++++  S+  MY KCG L+ A  +         
Sbjct: 458 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNS 517

Query: 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDS 555
           V WN +I  +  HG G+ ++ LF EM ++G+KP+  TFV+LLS+CS SG+VDEG   F+ 
Sbjct: 518 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEM 577

Query: 556 MRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV 615
           M+ DYGI P ++HYGC++D+ GR G L+ A +FI+ M   P A IWGALL+A R + ++ 
Sbjct: 578 MQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVD 637

Query: 616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKN 675
             + A+ H+     ++ G +VLLSNMYA AG+WE V++I++I   +GL+KT G S  E +
Sbjct: 638 LGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVD 697

Query: 676 GETHRFINQDRSHSKTYLIYNVLDIL---LRKIG----EDFYIHNVSKFSPAHLMKNRAK 728
            +   F   +++H     +Y  L  L   L+ IG      F + +V      H++ +   
Sbjct: 698 NKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMS--- 754

Query: 729 SPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFH 788
               HS RLAI+F LI+T     + +  N R+C DCHS  K IS+IT+RE+IVRD   FH
Sbjct: 755 ----HSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFH 810

Query: 789 HFRNGCCSCGDYW 801
           HF+NG CSCGDYW
Sbjct: 811 HFKNGVCSCGDYW 823

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/738 (36%), Positives = 422/738 (57%), Gaps = 20/738 (2%)

Query: 75  LQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMV-CEGFKAD 133
           L   V  G++  A Y+F KMS  + + WNV++ G+   G F EA+  +HRM+   G K D
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 134 YFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFD 193
            +T+P V++ C G+  L+ G++VH  + + G   D+ V N+LI MY+K G V+ A  +FD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 194 EMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKI 253
            MP RD +SWN+MI GY   G     L  F  M+   +  D  +L S + A  + G  ++
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 254 GKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVV 313
           G++IH  VI +G  +D+ V  SL  MY   G    AE+LF+ +  ++IV+W  M+ GY  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query: 314 NAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVA 373
           N    ++    R M++ D++ PD IT+  +L +C  LG L  G  +H  AI+   +  V 
Sbjct: 376 NFLPDKAIDTYR-MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVI 434

Query: 374 LETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP 433
           +   LI+MY+    +     +F ++  KN++SW ++IA    N +  EA+   + +    
Sbjct: 435 VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM-KMT 493

Query: 434 LKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA- 492
           L+P+A+T  + L A A I  L    +IH+ + + G+  + ++ N+++ MY +CG + TA 
Sbjct: 494 LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAW 553

Query: 493 -------RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGM 545
                  +DV SWN+++  Y+  G G + ++LF  M +  ++P+E TF+SLL  CS S M
Sbjct: 554 SQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQM 613

Query: 546 VDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALL 605
           V +G  YF  M +DYG+ P ++HY C++DLLGR G L +A +FI++MP  P   +WGALL
Sbjct: 614 VRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALL 672

Query: 606 TASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKK 665
            A R ++ I   E +A+H+    + + G Y+LL N+YA+ G+W +V +++ +M++ GL  
Sbjct: 673 NACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTV 732

Query: 666 TTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKN 725
             GCS  E  G+ H F++ D+ H +T  I  VL+    K+ E      ++K S +  M  
Sbjct: 733 DAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSE----VGLTKISESSSMDE 788

Query: 726 RAKSPHH----HSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIV 781
              S       HS R AI+FGLI+T  G P+ V  N  +CE+CH  VK IS+  +RE+ V
Sbjct: 789 TEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISV 848

Query: 782 RDPKCFHHFRNGCCSCGD 799
           RD + FHHF++G CSCGD
Sbjct: 849 RDAEHFHHFKDGECSCGD 866

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/734 (35%), Positives = 413/734 (56%), Gaps = 19/734 (2%)

Query: 82  GSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI 141
           G ++ A  +F+++       WN+++     +G F  ++    +M+  G + D +T+  V 
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTV 201
           K+ + L  +  GE++HG + KSG      V NSL+  Y+K   V+ A ++FDEM  RD +
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262

Query: 202 SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQV 261
           SWNS+I GY S G     L  F +M   G+  D  +++S     +    + +G+ +H   
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query: 262 IKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESF 321
           +K+    +     +L+DMY KCG +D A+ +F  +  R++V++ +M+ GY       E+ 
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query: 322 SCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDM 381
               +M E++ ++PD  T+  +L  C +   L EGK +H +        ++ +  AL+DM
Sbjct: 383 KLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDM 441

Query: 382 YAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP-LKPDAMT 440
           YA  G+++  E +F  M  K+++SWN +I  Y +N    EA+ LF  L  E    PD  T
Sbjct: 442 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 501

Query: 441 FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA-------- 492
            A +LPA A ++      +IH  I + G  S+ +++NS+V MYAKCG L  A        
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 561

Query: 493 -RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWN 551
            +D+VSW V+I  Y +HG GK +I LF++MR+ GI+ +E +FVSLL +CS SG+VDEGW 
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWR 621

Query: 552 YFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKN 611
           +F+ MR +  I P +EHY CI+D+L R G+L +A RFIE MP  P A IWGALL   R +
Sbjct: 622 FFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIH 681

Query: 612 NDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSM 671
           +D+  AE  A  V     +NTG YVL++N+YAEA +WE V++++  + + GL+K  GCS 
Sbjct: 682 HDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSW 741

Query: 672 FEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMK----NRA 727
            E  G  + F+  D S+ +T  I    +  LRK+         S  +   L+      + 
Sbjct: 742 IEIKGRVNIFVAGDSSNPETENI----EAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query: 728 KSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCF 787
           ++   HS +LA++ G+IS+  G  + V  N R+C DCH   K +S++T+RE+++RD   F
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query: 788 HHFRNGCCSCGDYW 801
           H F++G CSC  +W
Sbjct: 858 HQFKDGHCSCRGFW 871

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/837 (33%), Positives = 430/837 (51%), Gaps = 84/837 (10%)

Query: 40  FETNARSSKSTHIHKNQTITSKKSIGPR---------NITKTRALQELVSSGSMESACYL 90
           F T+A       IHK +TI+  K I  +         N+T +  +   +S G +  A  L
Sbjct: 23  FSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT-SHLISTYISVGCLSHAVSL 81

Query: 91  FEKMSYLDT--YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLL 148
             +    D   Y WN +IR + DNG   + +     M    +  D +T+PFV KAC  + 
Sbjct: 82  LRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 149 YLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIG 208
            +  GE  H     +G  S+V+V N+L+ MY +   +  A ++FDEM V D VSWNS+I 
Sbjct: 142 SVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIE 201

Query: 209 GYCSVGDGVSSLVFFKEMQN-CGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLE 267
            Y  +G    +L  F  M N  G R D  +L++ L   +  G   +GK++HC  + S + 
Sbjct: 202 SYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI 261

Query: 268 MDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKM 327
            ++ V   LVDMY KCG++D A  +F+ +  +++V+WNAMV GY     F ++     KM
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 328 LED----------------------------------DNLNPDCITIINLLPSCTKLGAL 353
            E+                                    + P+ +T+I++L  C  +GAL
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 354 LEGKSIHGYAIR-------KGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--EKNLV 404
           + GK IH YAI+        G      +   LIDMYA    +     +F S+   E+++V
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441

Query: 405 SWNAMIAAYVRNGQNREAMELFQDLWSE--PLKPDAMTFASILPAYAEIATLSDSMQIHS 462
           +W  MI  Y ++G   +A+EL  +++ E    +P+A T +  L A A +A L    QIH+
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501

Query: 463 --LITKLGLVSNIYISNSIVYMYAKCGDLQTARDV---------VSWNVIIMAYAIHGLG 511
             L  +   V  +++SN ++ MYAKCG +  AR V         V+W  ++  Y +HG G
Sbjct: 502 YALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560

Query: 512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC 571
           + ++ +F EMR  G K +  T + +L +CS SGM+D+G  YF+ M+  +G+ PG EHY C
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620

Query: 572 IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN 631
           ++DLLGR G L+ A R IEEMP  P   +W A L+  R +  +   E+AA  +   A ++
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680

Query: 632 TGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKT 691
            G Y LLSN+YA AGRW+DV +I+++M  +G+KK  GCS  E    T  F   D++H   
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHA 740

Query: 692 YLIYNVLDILLRKIGE-------DFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLI 744
             IY VL   +++I +        F +H+V       L+         HS +LA+++G++
Sbjct: 741 KEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLL-------FEHSEKLALAYGIL 793

Query: 745 STSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           +T  G  + +  N R+C DCH+A   +S I   ++I+RD   FHHF+NG CSC  YW
Sbjct: 794 TTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/753 (34%), Positives = 424/753 (56%), Gaps = 42/753 (5%)

Query: 82  GSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI 141
           G   +   +F+++S  +   WN +I        ++ A+E    M+ E  +   FT   V+
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 206

Query: 142 KACAGLLY---LSEGEKVHG-SLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV 197
            AC+ L     L  G++VH   L K  LNS  ++ N+L+ MY KLG +  ++ +      
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKGELNS--FIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 198 RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEI 257
           RD V+WN+++   C     + +L + +EM   G+  D F++ S L A S    L+ GKE+
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 258 HCQVIKSG-LEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAH 316
           H   +K+G L+ +  V ++LVDMY  C  V    R+F+ +F R I  WNAM+ GY  N H
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 317 FLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376
             E+      M E   L  +  T+  ++P+C + GA    ++IHG+ +++G   +  ++ 
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQN 444

Query: 377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWS----- 431
            L+DMY+  G + +  ++FG M +++LV+WN MI  YV +  + +A+ L   + +     
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504

Query: 432 ------EPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAK 485
                   LKP+++T  +ILP+ A ++ L+   +IH+   K  L +++ + +++V MYAK
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK 564

Query: 486 CGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSL 536
           CG LQ +R         +V++WNVIIMAY +HG G+ +I L   M  +G+KPNE TF+S+
Sbjct: 565 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 624

Query: 537 LSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA- 595
            ++CS SGMVDEG   F  M+ DYG+ P  +HY C++DLLGR G + +A + +  MP   
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 684

Query: 596 PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655
             A  W +LL ASR +N++   E AA++++    +    YVLL+N+Y+ AG W+   +++
Sbjct: 685 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 744

Query: 656 AIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYI---- 711
             M+++G++K  GCS  E   E H+F+  D SH ++  +   L+ L  ++ ++ Y+    
Sbjct: 745 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS 804

Query: 712 ---HNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAV 768
              HNV +     L+         HS +LAI+FG+++TS G  + V  N R+C DCH A 
Sbjct: 805 CVLHNVEEDEKEILLCG-------HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857

Query: 769 KKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           K IS+I  RE+I+RD + FH F+NG CSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  451 bits (1159), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/731 (33%), Positives = 402/731 (54%), Gaps = 14/731 (1%)

Query: 82   GSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI 141
            G++ SA ++F  MS  D   +N +I G    G  ++A+E   RM  +G + D  T   ++
Sbjct: 337  GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396

Query: 142  KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTV 201
             AC+    L  G+++H    K G  S+  +  +L+ +Y K   +E A   F E  V + V
Sbjct: 397  VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVV 456

Query: 202  SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQV 261
             WN M+  Y  + D  +S   F++MQ   +  ++++  S L      G L++G++IH Q+
Sbjct: 457  LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516

Query: 262  IKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESF 321
            IK+  +++  V + L+DMY K G +D A  +      +++V+W  M+ GY       ++ 
Sbjct: 517  IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576

Query: 322  SCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDM 381
            +  R+ML D  +  D + + N + +C  L AL EG+ IH  A   GF  ++  + AL+ +
Sbjct: 577  TTFRQML-DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 635

Query: 382  YAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTF 441
            Y+  G ++ +   F      + ++WNA+++ + ++G N EA+ +F  +  E +  +  TF
Sbjct: 636  YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695

Query: 442  ASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA--------- 492
             S + A +E A +    Q+H++ITK G  S   + N+++ MYAKCG +  A         
Sbjct: 696  GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 755

Query: 493  RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNY 552
            ++ VSWN II AY+ HG G  ++  F +M    ++PN  T V +LS+CS  G+VD+G  Y
Sbjct: 756  KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 815

Query: 553  FDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNN 612
            F+SM  +YG+ P  EHY C++D+L R G L +AK FI+EMP  P A +W  LL+A   + 
Sbjct: 816  FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHK 875

Query: 613  DIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMF 672
            ++   EFAA H+L    +++  YVLLSN+YA + +W+  +  +  M+++G+KK  G S  
Sbjct: 876  NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWI 935

Query: 673  EKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSP-- 730
            E     H F   D++H     I+     L ++  E  Y+ +   FS  + +++  K P  
Sbjct: 936  EVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDC--FSLLNELQHEQKDPII 993

Query: 731  HHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHF 790
              HS +LAISFGL+S     P+ V  N R+C DCH+ +K +S+++ RE+IVRD   FHHF
Sbjct: 994  FIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHF 1053

Query: 791  RNGCCSCGDYW 801
              G CSC DYW
Sbjct: 1054 EGGACSCKDYW 1064

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/749 (34%), Positives = 397/749 (53%), Gaps = 31/749 (4%)

Query: 72  TRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGF-VDNGLFQEAVEFHHRMVCEGF 130
           T+  Q L   G++  A  +F  +   D +++NV++RGF V+         F H       
Sbjct: 56  TKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL 115

Query: 131 KADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAER 190
           K +  TY F I A +G      G  +HG     G +S++ + ++++ MY K   VE A +
Sbjct: 116 KPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARK 175

Query: 191 MFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG-LRYDRFSLISALGAISIEG 249
           +FD MP +DT+ WN+MI GY      V S+  F+++ N    R D  +L+  L A++   
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 250 CLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVG 309
            L++G +IH    K+G      V T  + +Y KCG +     LF      +IVA+NAM+ 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295

Query: 310 GYVVNAHFLESFSCLRK-MLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF 368
           GY  N     S S  ++ ML    L     T+++L+P     G L+   +IHGY ++  F
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSS--TLVSLVPVS---GHLMLIYAIHGYCLKSNF 350

Query: 369 LPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQD 428
           L + ++ TAL  +Y+    ++   KLF    EK+L SWNAMI+ Y +NG   +A+ LF++
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 429 LWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCG- 487
           +      P+ +T   IL A A++  LS    +H L+      S+IY+S +++ MYAKCG 
Sbjct: 411 MQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGS 470

Query: 488 --------DLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSS 539
                   DL T ++ V+WN +I  Y +HG G+ ++ +F EM   GI P   TF+ +L +
Sbjct: 471 IAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530

Query: 540 CSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTAR 599
           CS +G+V EG   F+SM   YG  P ++HY C++D+LGR G+L +A +FIE M   P + 
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590

Query: 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659
           +W  LL A R + D   A   +  +     DN G +VLLSN+++    +     ++   +
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650

Query: 660 KEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFY-------IH 712
           K  L K  G ++ E     H F + D+SH +   IY  L+ L  K+ E  Y       +H
Sbjct: 651 KRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALH 710

Query: 713 NVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKIS 772
           +V +     ++K        HS RLAI+FGLI+T  G  + +  N R+C DCH+  K IS
Sbjct: 711 DVEEEERELMVKV-------HSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLIS 763

Query: 773 EITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           +IT+R ++VRD   FHHF++G CSCGDYW
Sbjct: 764 KITERVIVVRDANRFHHFKDGVCSCGDYW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/760 (33%), Positives = 410/760 (53%), Gaps = 24/760 (3%)

Query: 64  IGPRNITKTRALQELVSSGSMESACYLFEKMSYL---DTYIWNVVIRGFVDNGLFQEAVE 120
           I P ++     +     SG    A  +FE M      D   W+ ++  + +NG   +A++
Sbjct: 93  IEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIK 152

Query: 121 FHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSG-LNSDVYVCNSLIVMY 179
                +  G   + + Y  VI+AC+   ++  G    G L K+G   SDV V  SLI M+
Sbjct: 153 VFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMF 212

Query: 180 MK-LGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSL 238
           +K     E A ++FD+M   + V+W  MI     +G    ++ FF +M   G   D+F+L
Sbjct: 213 VKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272

Query: 239 ISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKC---GVVDYAERLFNM 295
            S   A +    L +GK++H   I+SGL  DV  + SLVDMY KC   G VD   ++F+ 
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDR 330

Query: 296 IFPRNIVAWNAMVGGYVVNAHF-LESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALL 354
           +   ++++W A++ GY+ N +   E+ +   +M+   ++ P+  T  +   +C  L    
Sbjct: 331 MEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPR 390

Query: 355 EGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYV 414
            GK + G A ++G   N ++  ++I M+  S  ++  ++ F S+ EKNLVS+N  +    
Sbjct: 391 VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTC 450

Query: 415 RNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIY 474
           RN    +A +L  ++    L   A TFAS+L   A + ++    QIHS + KLGL  N  
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510

Query: 475 ISNSIVYMYAKCGDLQTA---------RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG 525
           + N+++ MY+KCG + TA         R+V+SW  +I  +A HG     ++ F++M E+G
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEG 570

Query: 526 IKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQA 585
           +KPNE T+V++LS+CS  G+V EGW +F+SM +D+ I P +EHY C++DLL R G L  A
Sbjct: 571 VKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA 630

Query: 586 KRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA 645
             FI  MP      +W   L A R +++    + AAR +L    +    Y+ LSN+YA A
Sbjct: 631 FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACA 690

Query: 646 GRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKI 705
           G+WE+  +++  M++  L K  GCS  E   + H+F   D +H   + IY+ LD L+ +I
Sbjct: 691 GKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEI 750

Query: 706 GEDFYIHNVS----KFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRIC 761
               Y+ +      K    +    + +  + HS ++A++FGLISTS   PV V  N R+C
Sbjct: 751 KRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVC 810

Query: 762 EDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
            DCH+A+K IS ++ RE+++RD   FHHF++G CSC DYW
Sbjct: 811 GDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	801
225428104	802	PREDICTED: pentatricopeptide repeat-cont	0.990	0.988	0.612	0.0
224080660	784	predicted protein [Populus trichocarpa]	0.941	0.961	0.632	0.0
15236277	804	pentatricopeptide repeat-containing prot	0.906	0.902	0.580	0.0
297798412	803	pentatricopeptide repeat-containing prot	0.951	0.948	0.549	0.0
357114151	782	PREDICTED: pentatricopeptide repeat-cont	0.933	0.956	0.456	0.0
125542314	781	hypothetical protein OsI_09918 [Oryza sa	0.915	0.938	0.461	0.0
92429671	795	unknown [Sorghum bicolor]	0.898	0.905	0.460	0.0
108706064	781	pentatricopeptide, putative, expressed [	0.915	0.938	0.459	0.0
255560477	484	pentatricopeptide repeat-containing prot	0.593	0.981	0.657	0.0
326495618	788	predicted protein [Hordeum vulgare subsp	0.936	0.951	0.448	0.0

>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Vitis vinifera] gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/810 (61%), Positives = 618/810 (76%), Gaps = 17/810 (2%)

Query: 1   MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITS 60
           MA+  P   H++F+NS  P R    +K+ + P+TNP        R  K+    +NQ+   
Sbjct: 1   MASTFP---HTYFYNSKRP-RNASREKRARTPQTNPDTDLILKPRIFKTARSKRNQSFLV 56

Query: 61  KKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVE 120
           +++    +++ TRAL   V  G M++A  LFE M   DT+IWNV+IRGFVDNGLF +AV+
Sbjct: 57  ERN----SVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVD 112

Query: 121 FHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYM 180
           F+HRM   G + D FTYPFVIKAC GL  L+EGE+VHG + KSGL+ D+Y+ NSLI+MY 
Sbjct: 113 FYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYA 172

Query: 181 KLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLIS 240
           K+GC+E AE +F EMPVRD VSWNSMI GY SVGDG  SL  F+EMQ  G++ DRFS+I 
Sbjct: 173 KIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIG 232

Query: 241 ALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRN 300
            LGA S+EG L+ GKEIHCQ+++S LE+DVMVQTSLVDMY KCG +DYAERLF+ I  ++
Sbjct: 233 ILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKS 292

Query: 301 IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIH 360
           IVAWNAM+GGY +NA   ESF+ +RKM E   L+PD IT+INLLP C +L A+L GKS+H
Sbjct: 293 IVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVH 352

Query: 361 GYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNR 420
           G+AIR GFLP++ LETAL+DMY   G LK  E LFG M E+NL+SWNAMIA+Y +NG+NR
Sbjct: 353 GFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENR 412

Query: 421 EAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIV 480
           +AM LFQDL ++ LKPDA T ASILPAYAE+A+L ++ QIH  +TKL L SN ++SNSIV
Sbjct: 413 KAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIV 472

Query: 481 YMYAKCGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES 531
           +MY KCG+L  AR         DV+SWN +IMAYAIHG G+ISI+LFSEMREKG +PN S
Sbjct: 473 FMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGS 532

Query: 532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE 591
           TFVSLL SCS++G+V+EGW YF+SM++DY I PGIEHYGCI+DL+GR GNLD AK FIEE
Sbjct: 533 TFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEE 592

Query: 592 MPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDV 651
           MP APTARIWG+LLTASR   D+  AE AA H+LS   DNTGCYVLLSNMYAEAGRWEDV
Sbjct: 593 MPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDV 652

Query: 652 EQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYI 711
           E+IK  M+KEGL+K+ GCS+ + + +T RF+NQDRS ++  ++Y+VLDI+ +KIGED Y+
Sbjct: 653 ERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYV 712

Query: 712 HNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKI 771
           H+++KF P+ L K RA S   HS+RLAI FGLIST++GNPVLVR N RICE CH   K+I
Sbjct: 713 HSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRI 772

Query: 772 SEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           SE TKRE+IVRD K FHHF  G CSCGDYW
Sbjct: 773 SETTKREIIVRDSKIFHHFNGGHCSCGDYW 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]

 Score = 1029 bits (2661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/782 (63%), Positives = 606/782 (77%), Gaps = 28/782 (3%)

Query: 32  PETNPTPSFETNARSS--KSTHIHKNQTITSKKSIG-PRNITKTRALQELVSSGSMESAC 88
           PE N  P      R +  KS  I + Q+ TS K +  P ++  TR L   V SG M +A 
Sbjct: 19  PEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLCGFVESGLMGNAL 78

Query: 89  YLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLL 148
            +FEKM++ DT+IWNV+IRG+ +NGLFQEA++F++RM CEG ++D FT+PFVIKAC  LL
Sbjct: 79  DMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELL 138

Query: 149 YLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIG 208
            L  G+KVHG L K G + DVYVCN LI MY+K+G +E AE++FDEMPVRD VSWNSM+ 
Sbjct: 139 ALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVS 198

Query: 209 GYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEM 268
           GY   GDG+SSL+ FKEM   G + DRF +ISALGA SIE CL+ G EIHCQVI+S LE+
Sbjct: 199 GYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL 258

Query: 269 DVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKML 328
           D+MVQTSL+DMYGKCG VDYAER+FN I+ +NIVAWNAM+GG                M 
Sbjct: 259 DIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG----------------MQ 302

Query: 329 EDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGAL 388
           EDD + PD IT+INLLPSC++ GALLEGKSIHG+AIRK FLP + LETAL+DMY   G L
Sbjct: 303 EDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGEL 362

Query: 389 KMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448
           K+ E +F  M EKN+VSWN M+AAYV+N Q +EA+++FQ + +EPLKPDA+T AS+LPA 
Sbjct: 363 KLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAV 422

Query: 449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVVSWN 499
           AE+A+ S+  QIHS I KLGL SN +ISN+IVYMYAKCGDLQTAR         DVVSWN
Sbjct: 423 AELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWN 482

Query: 500 VIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKD 559
            +IMAYAIHG G+ SIQ FSEMR KG KPN STFVSLL++CSISG++DEGW +F+SM+ +
Sbjct: 483 TMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVE 542

Query: 560 YGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEF 619
           YGI PGIEHYGC++DLLGR GNLD+AK FIEEMP  PTARIWG+LL ASR +ND+V AE 
Sbjct: 543 YGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAEL 602

Query: 620 AARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETH 679
           AARH+LS   DNTGCYVLLSNMYAEAGRWEDV++IK +M+++GL KT GCSM + NG + 
Sbjct: 603 AARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSE 662

Query: 680 RFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAI 739
            FINQDRSH+ T LIY+VLDILL+KIGED Y+H+++KF P  + K R  SP +HSV+LAI
Sbjct: 663 SFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAI 722

Query: 740 SFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGD 799
            FGLIST++GNPV+VR NTRIC+DCH A KKIS++TKRE++V D K FHHFR+GCCSC D
Sbjct: 723 CFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRD 782

Query: 800 YW 801
           YW
Sbjct: 783 YW 784

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g35130, chloroplastic; Flags: Precursor gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana] gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/741 (58%), Positives = 534/741 (72%), Gaps = 15/741 (2%)

Query: 72  TRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFK 131
           TRAL+    S  ME A  LF++M+  D ++WNV+I+GF   GL+ EAV+F+ RMV  G K
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query: 132 ADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERM 191
           AD FTYPFVIK+ AG+  L EG+K+H  + K G  SDVYVCNSLI +YMKLGC   AE++
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 192 FDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCL 251
           F+EMP RD VSWNSMI GY ++GDG SSL+ FKEM  CG + DRFS +SALGA S     
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 252 KIGKEIHCQVIKSGLEM-DVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGG 310
           K+GKEIHC  ++S +E  DVMV TS++DMY K G V YAER+FN +  RNIVAWN M+G 
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307

Query: 311 YVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP 370
           Y  N    ++F C +KM E + L PD IT INLLP+     A+LEG++IHGYA+R+GFLP
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLP 363

Query: 371 NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLW 430
           ++ LETALIDMY   G LK  E +F  M EKN++SWN++IAAYV+NG+N  A+ELFQ+LW
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423

Query: 431 SEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQ 490
              L PD+ T ASILPAYAE  +LS+  +IH+ I K    SN  I NS+V+MYA CGDL+
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query: 491 TAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCS 541
            AR         DVVSWN IIMAYA+HG G+IS+ LFSEM    + PN+STF SLL++CS
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query: 542 ISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIW 601
           ISGMVDEGW YF+SM+++YGI PGIEHYGC++DL+GR GN   AKRF+EEMP  PTARIW
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603

Query: 602 GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661
           G+LL ASR + DI  AEFAA  +     DNTGCYVLL NMYAEAGRWEDV +IK +ME +
Sbjct: 604 GSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESK 663

Query: 662 GLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIG-EDFYIHNVSKFSPA 720
           G+ +T+  S  E  G++H F N DRSH  T  IY VLD++ R +G ED Y+H VS+  P 
Sbjct: 664 GISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPE 723

Query: 721 HLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI 780
            L+K+R+ SP  HSVRLA  FGLIST  G  V VRNNTRIC  CH  ++K S +T+RE++
Sbjct: 724 TLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIV 783

Query: 781 VRDPKCFHHFRNGCCSCGDYW 801
           V D K FHHF NG CSCG+YW
Sbjct: 784 VGDSKIFHHFSNGRCSCGNYW 804

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/784 (54%), Positives = 543/784 (69%), Gaps = 22/784 (2%)

Query: 33  ETNPTPSFETNARSSKSTH-IHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLF 91
           +T    S E ++R SK    + +++   +K+   P     TRAL+    SG ME A  LF
Sbjct: 27  QTTGKRSLEFDSRFSKPVRLVLRDRYKVTKQLNDP---ALTRALRGFADSGLMEDALQLF 83

Query: 92  EKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLS 151
           ++M+  DT++WNV+I+GF   GL+ EA++ + RMV  G KAD FTYPFVIK+  G+  L 
Sbjct: 84  DEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLE 143

Query: 152 EGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYC 211
           EG+K+H  + K    SDVYVCNSLI +YMKLGC   AE++F+EMP RD VSWNSMI GY 
Sbjct: 144 EGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYL 203

Query: 212 SVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEM-DV 270
           ++ DG  SL+ FKEM   G + DRFS +SALGA S      +GKE+HC  ++S +E  DV
Sbjct: 204 ALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDV 263

Query: 271 MVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLED 330
           MV TS++DMY K G V YAER+F  I  RNIVAWN ++G Y  N+   ++F C +KM E 
Sbjct: 264 MVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQ 323

Query: 331 DNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKM 390
           + L PD IT+INLLP+C    A+LEG++IHGYA+R+GFLP++ L+TALIDMY   G LK 
Sbjct: 324 NGLQPDVITLINLLPAC----AILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKS 379

Query: 391 TEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAE 450
            E +F  + EKNL+SWN++IAAYV+NG+N  A+ELFQ LW   L PD+ T ASILPAYAE
Sbjct: 380 AEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAE 439

Query: 451 IATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVVSWNVI 501
             +LS+  QIH+ I K    SN  I NS+V+MYA CGDL+ AR         DVVSWN I
Sbjct: 440 SLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSI 499

Query: 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYG 561
           IMAYA+HG G+IS+ LFSEM    + PN+STF SLL++CSISGMVDEGW YF+SM+++YG
Sbjct: 500 IMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYG 559

Query: 562 IVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAA 621
           I PGIEHYG ++DL+GR GN   AKRFI EMP  PTARIWG+LL ASR +NDI  AEFAA
Sbjct: 560 IDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAA 619

Query: 622 RHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRF 681
             +     DNTGCYVLL NMYAEA RWEDV +IK +ME +G+ +T+  S  E   +TH  
Sbjct: 620 EQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKSKTHVL 679

Query: 682 INQDRSHSKTYLIYNVLDILLRKIG----EDFYIHNVSKFSPAHLMKNRAKSPHHHSVRL 737
            N DRSH +T  IY VLDI+ R IG    ED Y+H VSK     L K+R+ SP  HSVRL
Sbjct: 680 TNGDRSHVETNKIYEVLDIVSRMIGEEEEEDSYVHYVSKLRRETLAKSRSNSPRRHSVRL 739

Query: 738 AISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSC 797
           A  FGLIST  G  V VRNNTRIC  CH  ++K S++T+RE++V D K FHHF NG CSC
Sbjct: 740 ATCFGLISTETGRTVTVRNNTRICRKCHEFLEKASKMTRREIVVGDSKIFHHFSNGRCSC 799

Query: 798 GDYW 801
           G+YW
Sbjct: 800 GNYW 803

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Brachypodium distachyon]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/769 (45%), Positives = 497/769 (64%), Gaps = 21/769 (2%)

Query: 49  STHIHKNQTITSKKSIGPR-NITKTRALQELV----SSGSMESACYLFEKMSYLDTYIWN 103
           +T+  ++   ++ K   PR    +  +L+ LV    ++G M  A  L    S  D ++ N
Sbjct: 19  TTYASQHLAASTSKEPPPRVRPKRGPSLKSLVLSHAAAGRMHDA--LAAVRSSPDAFLHN 76

Query: 104 VVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS 163
           VVIRGF D GL + A+  +  M+  G + D FT+P V+K CA L  L EG   H +  + 
Sbjct: 77  VVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRL 136

Query: 164 GL-NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVF 222
           GL  S+VY  NSL+  Y KLG V  AER+FD MPVRD V+WNSM+ GY S G G  +L  
Sbjct: 137 GLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDC 196

Query: 223 FKEM-QNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYG 281
           F+EM +   +++D   +I+AL A  ++  L  G+E+H  VI+ GLE DV V TSL+DMY 
Sbjct: 197 FREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYC 256

Query: 282 KCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITII 341
           KCG +  AE +F  +  R +V WN M+GGY +N    E+F C  +M  + +   + +T I
Sbjct: 257 KCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGH-QVEVVTAI 315

Query: 342 NLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK 401
           NLL +C +  + L G+S+HGY  R  FLP+V LETAL++MY+  G +K +E +FG M  K
Sbjct: 316 NLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNK 375

Query: 402 NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIH 461
            LVSWN MIAAY+      EA+ LF +L ++PL PD  T ++++PA+  +  L    Q+H
Sbjct: 376 TLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMH 435

Query: 462 SLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVVSWNVIIMAYAIHGLGK 512
           S I +L    N  ++N++++MYA+CGD+ ++R         DV+SWN IIM YAIHG GK
Sbjct: 436 SYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGK 495

Query: 513 ISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI 572
           I++++FSEM+  G++PNESTFVS+L++CS+SGM DEGW  F+ M++DYGI+P IEHYGC+
Sbjct: 496 IALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCM 555

Query: 573 IDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632
            DLLGR G+L +  +FIE +P  PT RIWG+LLTASR  NDI  AE+AA  +     DNT
Sbjct: 556 TDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNT 615

Query: 633 GCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTY 692
           GCYV+LS+MYA+AGRWEDV++I++ M ++GL++T   S+ E +G +  F+N D +H ++ 
Sbjct: 616 GCYVILSSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSK 675

Query: 693 LIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPV 752
            I+ V D+L RKIGE  Y  N+S   P  L   R   P+ HSVRLA+ FGLIS+    P+
Sbjct: 676 TIHEVSDVLSRKIGETDYPRNLS--DPISLTSRRTIIPNKHSVRLAVVFGLISSEARAPI 733

Query: 753 LVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           LV+ N RIC  CH A+K IS+ ++R ++V D   +H F +G C CGDYW
Sbjct: 734 LVKKNVRICNHCHHALKLISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/746 (46%), Positives = 482/746 (64%), Gaps = 13/746 (1%)

Query: 66  PRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRM 125
           P+  +    +  L + G M+ A      +   D ++ NV+IRGF D GL   A+  +  M
Sbjct: 39  PKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGM 98

Query: 126 VCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCV 185
           + +G + D FT+P V+K CA L  L EG   HG + K GL  DVY CNSL+  Y KLG V
Sbjct: 99  LEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLV 158

Query: 186 ECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC-GLRYDRFSLISALGA 244
           E AER+FD MPVRD V+WN M+ GY S G G  +L  F+EM +   +++D   +I+AL A
Sbjct: 159 EDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAA 218

Query: 245 ISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAW 304
             +E     GKEIH  VI+ GLE D+ V TSL+DMY KCG V YA  +F  +  R +V W
Sbjct: 219 CCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTW 278

Query: 305 NAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAI 364
           N M+GGY +N    E+F C  +M   + L  + +T INLL +C +  + L G+S+HGY +
Sbjct: 279 NCMIGGYALNERPDEAFDCFMQM-RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVV 337

Query: 365 RKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME 424
           R+ FLP+V LETAL++MY   G ++ +EK+FG +  K LVSWN MIAAY+      EA+ 
Sbjct: 338 RRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAIT 397

Query: 425 LFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484
           LF +L ++PL PD  T ++++PA+  + +L    QIHS I  LG   N  I N++++MYA
Sbjct: 398 LFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYA 457

Query: 485 KCGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS 535
           + GD+  +R         DV+SWN +IM YAIHG GK ++++F EM+  G++PNESTFVS
Sbjct: 458 RSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVS 517

Query: 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA 595
           +L++CS+SG+VDEGW +F+ M ++YG++P IEHYGC+ DLLGR G+L +  +FIE MP  
Sbjct: 518 VLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPID 577

Query: 596 PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655
           PT+R+WG+LLTASR  NDI  AE+AA  +     DNTGCY++LS+MYA+AGRWEDVE+++
Sbjct: 578 PTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVR 637

Query: 656 AIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVS 715
            +M+++GL++T   S+ E +     F N D SHS++  I+ V DIL RKI E     N S
Sbjct: 638 LLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKETDDTRNQS 697

Query: 716 KFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEIT 775
              P  +       P+ HSVRLA+ FGLIS+ +G+P+LV+ N RIC  CH A+K IS  +
Sbjct: 698 Y--PVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYS 755

Query: 776 KRELIVRDPKCFHHFRNGCCSCGDYW 801
            R ++V D K +H F +G C CGDYW
Sbjct: 756 GRRIVVGDSKIYHEFSDGSCCCGDYW 781

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/734 (46%), Positives = 485/734 (66%), Gaps = 14/734 (1%)

Query: 79  VSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP 138
           V++G M+ A   F  ++    ++ NV+IRGF D  L  +A+  +  M+  G + D FT+P
Sbjct: 65  VAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFP 124

Query: 139 FVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR 198
            V+K CA    L EG   H ++ K GL +DVY  NSL+ +Y KLG V  AER+FD MP R
Sbjct: 125 VVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPAR 184

Query: 199 DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC-GLRYDRFSLISALGAISIEGCLKIGKEI 257
           D VSWN+M+ GY S G G  +L  F+EM +   + +D   +I+AL A  +E  L +G+EI
Sbjct: 185 DIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREI 244

Query: 258 HCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHF 317
           H   I+ GLE DV V TSLVDMY KCG V +AE +F  +  R +V WN M+GGY +N   
Sbjct: 245 HGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERP 304

Query: 318 LESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETA 377
           +++F C  +M   D    + +T INLL +C +  + L G+S+H Y +R+ FLP+V LETA
Sbjct: 305 VDAFDCFMQM-RVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETA 363

Query: 378 LIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD 437
           L++MY   G ++ +EK+FG + +K LVSWN MIAAY+     +EA+ LF +L ++PL PD
Sbjct: 364 LLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPD 423

Query: 438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---- 493
             T  +++PA+  + ++    Q+HS I KLG   +  I N++++MYA+CG++  +R    
Sbjct: 424 YFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFD 483

Query: 494 -----DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDE 548
                DV+SWN II+ YAIHG GKI++++F EM+  G++PNESTFVS+L++CS+SG+  E
Sbjct: 484 KMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAE 543

Query: 549 GWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTAS 608
           GW  F+SM+++YG++P IEHYGC+ DLLGR G L +  RFIE MP APT+RIWG+LLTAS
Sbjct: 544 GWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTAS 603

Query: 609 RKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTG 668
           R  NDI  AE+AA  +     +NTGCYV+LS+MYA+AGRWEDVE+I+++M+++GL++T  
Sbjct: 604 RNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEA 663

Query: 669 CSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDF-YIHNVSKFSPAHLMKNRA 727
            S+ E N +   F+N D SH ++  I+   DIL R IGED     N+    P     +  
Sbjct: 664 RSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNIGEDLDSSSNLRDSDP--FASSTT 721

Query: 728 KSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCF 787
             P+ HSVRLA++FGLIS+  G+PVLV+ N R+C  CH A+K IS+ + R+++V D K +
Sbjct: 722 VLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRVCNHCHHALKLISKYSGRKIVVGDTKIY 781

Query: 788 HHFRNGCCSCGDYW 801
           H F +G C CGDYW
Sbjct: 782 HIFSDGSCCCGDYW 795

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/746 (45%), Positives = 483/746 (64%), Gaps = 13/746 (1%)

Query: 66  PRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRM 125
           P+  +    +  L + G M+ A      +   D ++ NV+IRGF D GL   A+  +  M
Sbjct: 39  PKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGM 98

Query: 126 VCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCV 185
           + +G + D FT+P V+K CA L  L EG   HG + K GL  DVY CNSL+  Y KLG V
Sbjct: 99  LEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLV 158

Query: 186 ECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC-GLRYDRFSLISALGA 244
           E AER+FD MPVRD V+WN+M+ GY S G G  +L  F+EM +   +++D   +I+AL A
Sbjct: 159 EDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAA 218

Query: 245 ISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAW 304
             +E     GKEIH  VI+ GLE D+ V TSL+DMY KCG V YA  +F  +  R +V W
Sbjct: 219 CCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTW 278

Query: 305 NAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAI 364
           N M+GGY +N    E+F C  +M   + L  + +T INLL +C +  + L G+S+HGY +
Sbjct: 279 NCMIGGYALNERPDEAFDCFMQM-RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVV 337

Query: 365 RKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME 424
           R+ FLP+V LETAL++MY   G ++ +EK+FG +  K LVSWN MIAAY+      EA+ 
Sbjct: 338 RRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAIT 397

Query: 425 LFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484
           LF +L ++PL PD  T ++++PA+  + +L    QIHS I  LG   N  I N++++MYA
Sbjct: 398 LFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYA 457

Query: 485 KCGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS 535
           + GD+  +R         DV+SWN +IM YAIHG GK ++++F EM+  G++PNESTFVS
Sbjct: 458 RSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVS 517

Query: 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA 595
           +L++CS+SG+VDEGW +F+ M ++YG++P IEHYGC+ DLLGR G+L +  +FIE MP  
Sbjct: 518 VLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPID 577

Query: 596 PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655
           PT+R+WG+LLTASR  NDI  AE+AA  +     DNTGCY++LS+MYA+AGRWEDVE+++
Sbjct: 578 PTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVR 637

Query: 656 AIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVS 715
            +M+++GL++T   S+ E +     F N D SHS++  I+ V +IL RKI E     N S
Sbjct: 638 LLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEETDDTRNQS 697

Query: 716 KFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEIT 775
              P  +       P+ HSVRLA+ FGLIS+ +G+P+LV+ N RIC  CH A+K IS  +
Sbjct: 698 Y--PVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYS 755

Query: 776 KRELIVRDPKCFHHFRNGCCSCGDYW 801
            R ++V D K +H F +G C CGDYW
Sbjct: 756 GRRIVVGDSKIYHEFSDGSCCCGDYW 781

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/484 (65%), Positives = 385/484 (79%), Gaps = 9/484 (1%)

Query: 327 MLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSG 386
           M EDDNL PD IT+INLLPSC++ GAL  GK IHGYAIRK FLP++ LETAL+DMY   G
Sbjct: 1   MQEDDNLIPDVITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCG 60

Query: 387 ALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILP 446
            L++ +++F  + EKNLVSWN MIAAYV+NG N EA+ELF  LW+EP KPDA+T ASILP
Sbjct: 61  ELELAKRVFSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIASILP 120

Query: 447 AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVVS 497
           AYAE+A++S+  QIHS I K+ L S+  ISN+IVYMYAKCGDL+TAR         +VVS
Sbjct: 121 AYAELASVSECKQIHSYIIKIELSSHTIISNAIVYMYAKCGDLKTARRIFDGMLCKNVVS 180

Query: 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR 557
           WN +IMAY IHG G +SIQLFSEMRE GIKPNESTFVSLLSSCSI+G+VDEGW +F+SM+
Sbjct: 181 WNTMIMAYGIHGFGTMSIQLFSEMRENGIKPNESTFVSLLSSCSITGLVDEGWEFFNSMK 240

Query: 558 KDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSA 617
            DY I  GIEH+GC++DLLGR GNLD A +FIEE+P  PTARIWG+LLTASR  N+I  A
Sbjct: 241 SDYNIDHGIEHFGCMVDLLGRTGNLDAAMQFIEELPLVPTARIWGSLLTASRNKNNIALA 300

Query: 618 EFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGE 677
           E AA+H+ S   DNTGCYVLLSNMYAEAGRWEDVEQIK +M+K+G+ KT  C M E NG+
Sbjct: 301 ELAAKHIFSLEHDNTGCYVLLSNMYAEAGRWEDVEQIKTLMKKKGIVKTVSCCMVETNGK 360

Query: 678 THRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRL 737
           +H+FINQD+SHS+  +IY+VLDI+++KIG+D Y+H+VSKF    LM  R  SP +HSV+L
Sbjct: 361 SHKFINQDKSHSQINMIYDVLDIIMKKIGKDAYVHSVSKFRLVDLMNKRKNSPANHSVKL 420

Query: 738 AISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSC 797
           AI FGLIST++G PV++R  TRICEDCH   KKIS +TKRE+I+ D K FHHF  G CSC
Sbjct: 421 AICFGLISTAIGKPVVIRKTTRICEDCHMVAKKISLVTKREIIIGDSKIFHHFNGGSCSC 480

Query: 798 GDYW 801
            DYW
Sbjct: 481 RDYW 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/769 (44%), Positives = 488/769 (63%), Gaps = 19/769 (2%)

Query: 49  STHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRG 108
           S H+    +     S+ P+       +    ++G M+ A          D ++ NVVIRG
Sbjct: 23  SQHLAAATSKEPPPSVRPKPGGTKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRG 82

Query: 109 FVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNS- 167
             D GL   A+  +  M+  G + D FT+P V+K CA L  L EG   H +  + G+ + 
Sbjct: 83  LADAGLPGAALAAYAAMLAAGARPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAA 142

Query: 168 DVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQ 227
           DVY  NSL+  Y +LG V+ AER+FD MP RD V+WNSM+ GY S G G  +LV F+EM 
Sbjct: 143 DVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMH 202

Query: 228 NC-GLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVV 286
               +++D   +I+AL A  +E  L  G+E+H  VI+ G+E DV V TS++DMY KCG +
Sbjct: 203 EALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDI 262

Query: 287 DYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPS 346
             AE +F  +  R +V WN M+GGY +N    E+F C  +M  + +   + +T INLL +
Sbjct: 263 ASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGH-QVEVVTAINLLAA 321

Query: 347 CTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSW 406
           C +  + L G+S+HGY  R+ FLP+V LETAL++MY+  G +K +EK+FG M  K LVSW
Sbjct: 322 CAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSW 381

Query: 407 NAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITK 466
           N MIAAY+      EA+ LF DL ++PL PD  T ++++PA+  +  L    Q+HS I +
Sbjct: 382 NNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIR 441

Query: 467 LGLVSNIYISNSIVYMYAKCGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQL 517
           LG   N  I N+I++MYA+CGD+ ++R         DV+SWN +IM YAIHG G+ ++++
Sbjct: 442 LGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEM 501

Query: 518 FSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLG 577
           FSEM+  G++PNESTFVS+L++CS+SG+ DEGW  F+SM++DYG++P IEHYGC+ DLLG
Sbjct: 502 FSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLG 561

Query: 578 RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQ-----DNT 632
           R G+L +  +FIE MP  PT R+WG+LLTASR  NDI  AE+AA  +    Q     DNT
Sbjct: 562 RAGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNT 621

Query: 633 GCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTY 692
           GCYVL+S+MYA+AGRW+DVE+IK++ME++GL++T   S+ E +G +  F+N D +H ++ 
Sbjct: 622 GCYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSK 681

Query: 693 LIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPV 752
           +I  V + L  KIGE     N S   P  L   R   P+ HSVRLA+ FGLIST    P+
Sbjct: 682 MIQEVSNFLSGKIGEMRDPMNQS--DPTSLDSRRTTEPNKHSVRLAVVFGLISTEARTPI 739

Query: 753 LVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           LV+ N RIC DCH A+K IS+ + R ++V D   +H F +G C CGDYW
Sbjct: 740 LVKKNVRICNDCHHALKLISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	801
TAIR|locus:2131631	804	AT4G35130 "AT4G35130" [Arabido	0.906	0.902	0.580	1.9e-232
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.967	0.957	0.349	5.2e-136
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.456	0.411	0.397	2.9e-133
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.921	0.896	0.362	7.9e-133
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.898	0.831	0.364	3.9e-131
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.893	0.822	0.357	3.3e-127
TAIR|locus:2148101	850	AT5G16860 "AT5G16860" [Arabido	0.525	0.495	0.369	9.4e-122
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.932	0.943	0.346	4.7e-118
TAIR|locus:2096414	882	AT3G03580 [Arabidopsis thalian	0.905	0.821	0.344	6.2e-117
TAIR|locus:2032840	937	AT1G16480 "AT1G16480" [Arabido	0.922	0.788	0.332	1e-116

TAIR|locus:2131631 AT4G35130 "AT4G35130" [Arabidopsis thaliana (taxid:3702)]

 Score = 2242 (794.3 bits), Expect = 1.9e-232, P = 1.9e-232
 Identities = 430/741 (58%), Positives = 534/741 (72%)

Query:    72 TRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFK 131
             TRAL+    S  ME A  LF++M+  D ++WNV+I+GF   GL+ EAV+F+ RMV  G K
Sbjct:    68 TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query:   132 ADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERM 191
             AD FTYPFVIK+ AG+  L EG+K+H  + K G  SDVYVCNSLI +YMKLGC   AE++
Sbjct:   128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query:   192 FDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCL 251
             F+EMP RD VSWNSMI GY ++GDG SSL+ FKEM  CG + DRFS +SALGA S     
Sbjct:   188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query:   252 KIGKEIHCQVIKSGLEM-DVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGG 310
             K+GKEIHC  ++S +E  DVMV TS++DMY K G V YAER+FN +  RNIVAWN M+G 
Sbjct:   248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307

Query:   311 YVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP 370
             Y  N    ++F C +KM E + L PD IT INLLP+     A+LEG++IHGYA+R+GFLP
Sbjct:   308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLP 363

Query:   371 NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLW 430
             ++ LETALIDMY   G LK  E +F  M EKN++SWN++IAAYV+NG+N  A+ELFQ+LW
Sbjct:   364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423

Query:   431 SEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQ 490
                L PD+ T ASILPAYAE  +LS+  +IH+ I K    SN  I NS+V+MYA CGDL+
Sbjct:   424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query:   491 TAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCS 541
              AR         DVVSWN IIMAYA+HG G+IS+ LFSEM    + PN+STF SLL++CS
Sbjct:   484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query:   542 ISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIW 601
             ISGMVDEGW YF+SM+++YGI PGIEHYGC++DL+GR GN   AKRF+EEMP  PTARIW
Sbjct:   544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603

Query:   602 GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661
             G+LL ASR + DI  AEFAA  +     DNTGCYVLL NMYAEAGRWEDV +IK +ME +
Sbjct:   604 GSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESK 663

Query:   662 GLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGE-DFYIHNVSKFSPA 720
             G+ +T+  S  E  G++H F N DRSH  T  IY VLD++ R +GE D Y+H VS+  P 
Sbjct:   664 GISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPE 723

Query:   721 HLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI 780
              L+K+R+ SP  HSVRLA  FGLIST  G  V VRNNTRIC  CH  ++K S +T+RE++
Sbjct:   724 TLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIV 783

Query:   781 VRDPKCFHHFRNGCCSCGDYW 801
             V D K FHHF NG CSCG+YW
Sbjct:   784 VGDSKIFHHFSNGRCSCGNYW 804

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
 Identities = 278/795 (34%), Positives = 451/795 (56%)

Query:    24 PSQKQFKIPETNPTPS--FETNA-----RSSKSTHIHKNQTITSKKSIGPRNITKTRALQ 76
             PS+ +  + E N  P+  +E  A     R S    + +   +  K  +   +  +T+ + 
Sbjct:    18 PSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVS 77

Query:    77 ELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFT 136
                  GS++ A  +FE +      +++ +++GF       +A++F  RM  +  +   + 
Sbjct:    78 LFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYN 137

Query:   137 YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP 196
             + +++K C     L  G+++HG L KSG + D++    L  MY K   V  A ++FD MP
Sbjct:   138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197

Query:   197 VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKE 256
              RD VSWN+++ GY   G    +L   K M    L+    +++S L A+S    + +GKE
Sbjct:   198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257

Query:   257 IHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAH 316
             IH   ++SG +  V + T+LVDMY KCG ++ A +LF+ +  RN+V+WN+M+  YV N +
Sbjct:   258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317

Query:   317 FLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376
               E+    +KML D+ + P  ++++  L +C  LG L  G+ IH  ++  G   NV++  
Sbjct:   318 PKEAMLIFQKML-DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVN 376

Query:   377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKP 436
             +LI MY     +     +FG +  + LVSWNAMI  + +NG+  +A+  F  + S  +KP
Sbjct:   377 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 436

Query:   437 DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCG--------- 487
             D  T+ S++ A AE++    +  IH ++ +  L  N++++ ++V MYAKCG         
Sbjct:   437 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query:   488 DLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVD 547
             D+ + R V +WN +I  Y  HG GK +++LF EM++  IKPN  TF+S++S+CS SG+V+
Sbjct:   497 DMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556

Query:   548 EGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTA 607
              G   F  M+++Y I   ++HYG ++DLLGR G L++A  FI +MP  P   ++GA+L A
Sbjct:   557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query:   608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTT 667
              + + ++  AE AA  +     D+ G +VLL+N+Y  A  WE V Q++  M ++GL+KT 
Sbjct:   617 CQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query:   668 GCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSK-FSPAHLMKNR 726
             GCSM E   E H F +   +H  +  IY  L+ L+  I E  Y+ + +      + +K +
Sbjct:   677 GCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQ 736

Query:   727 AKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKC 786
               S H  S +LAISFGL++T+ G  + VR N R+C DCH+A K IS +T RE++VRD + 
Sbjct:   737 LLSTH--SEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQR 794

Query:   787 FHHFRNGCCSCGDYW 801
             FHHF+NG CSCGDYW
Sbjct:   795 FHHFKNGACSCGDYW 809

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
 Identities = 151/380 (39%), Positives = 237/380 (62%)

Query:   434 LKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR 493
             LKP+++T  +ILP+ A ++ L+   +IH+   K  L +++ + +++V MYAKCG LQ +R
Sbjct:   513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query:   494 ---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISG 544
                      +V++WNVIIMAY +HG G+ +I L   M  +G+KPNE TF+S+ ++CS SG
Sbjct:   573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query:   545 MVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMP-SAPTARIWGA 603
             MVDEG   F  M+ DYG+ P  +HY C++DLLGR G + +A + +  MP     A  W +
Sbjct:   633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query:   604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663
             LL ASR +N++   E AA++++    +    YVLL+N+Y+ AG W+   +++  M+++G+
Sbjct:   693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query:   664 KKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLM 723
             +K  GCS  E   E H+F+  D SH ++  +   L+ L  ++ ++ Y+ + S     H +
Sbjct:   753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS--CVLHNV 810

Query:   724 KNRAKSPH--HHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIV 781
             +   K      HS +LAI+FG+++TS G  + V  N R+C DCH A K IS+I  RE+I+
Sbjct:   811 EEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIIL 870

Query:   782 RDPKCFHHFRNGCCSCGDYW 801
             RD + FH F+NG CSCGDYW
Sbjct:   871 RDVRRFHRFKNGTCSCGDYW 890

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
 Identities = 283/781 (36%), Positives = 446/781 (57%)

Query:    42 TNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSS-GSMESACYLFEKMSYLDTY 100
             TN +S+K  H    + + SK+    +N+  +  L  L    G++  A + F+ +   D Y
Sbjct:    65 TNLQSAKCLHA---RLVVSKQI---QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query:   101 IWNVVIRGFVDNGLFQEAVE-FHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGS 159
              WN++I G+   G   E +  F   M+  G   DY T+P V+KAC  ++   +G K+H  
Sbjct:   119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCL 175

Query:   160 LFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSS 219
               K G   DVYV  SLI +Y +   V  A  +FDEMPVRD  SWN+MI GYC  G+   +
Sbjct:   176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query:   220 LVFFKEMQNCGLR-YDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVD 278
             L     + N GLR  D  +++S L A +  G    G  IH   IK GLE ++ V   L+D
Sbjct:   236 LT----LSN-GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290

Query:   279 MYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI 338
             +Y + G +   +++F+ ++ R++++WN+++  Y +N   L + S  ++M     + PDC+
Sbjct:   291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM-RLSRIQPDCL 349

Query:   339 TIINLLPSCTKLGALLEGKSIHGYAIRKG-FLPNVALETALIDMYAGSGALKMTEKLFGS 397
             T+I+L    ++LG +   +S+ G+ +RKG FL ++ +  A++ MYA  G +     +F  
Sbjct:   350 TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW 409

Query:   398 MIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE-PLKPDAMTFASILPAYAEIATLSD 456
             +   +++SWN +I+ Y +NG   EA+E++  +  E  +  +  T+ S+LPA ++   L  
Sbjct:   410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469

Query:   457 SMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDV---------VSWNVIIMAYAI 507
              M++H  + K GL  ++++  S+  MY KCG L+ A  +         V WN +I  +  
Sbjct:   470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 529

Query:   508 HGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIE 567
             HG G+ ++ LF EM ++G+KP+  TFV+LLS+CS SG+VDEG   F+ M+ DYGI P ++
Sbjct:   530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query:   568 HYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSS 627
             HYGC++D+ GR G L+ A +FI+ M   P A IWGALL+A R + ++   + A+ H+   
Sbjct:   590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query:   628 AQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRS 687
               ++ G +VLLSNMYA AG+WE V++I++I   +GL+KT G S  E + +   F   +++
Sbjct:   650 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 709

Query:   688 HSKTYLIYNVLDIL---LRKIG--ED--FYIHNVSKFSPAHLMKNRAKSPHHHSVRLAIS 740
             H     +Y  L  L   L+ IG   D  F + +V      H++ +       HS RLAI+
Sbjct:   710 HPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMS-------HSERLAIA 762

Query:   741 FGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDY 800
             F LI+T     + +  N R+C DCHS  K IS+IT+RE+IVRD   FHHF+NG CSCGDY
Sbjct:   763 FALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDY 822

Query:   801 W 801
             W
Sbjct:   823 W 823

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 268/736 (36%), Positives = 425/736 (57%)

Query:    75 LQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMV-CEGFKAD 133
             L   V  G++  A Y+F KMS  + + WNV++ G+   G F EA+  +HRM+   G K D
Sbjct:   136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query:   134 YFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFD 193
              +T+P V++ C G+  L+ G++VH  + + G   D+ V N+LI MY+K G V+ A  +FD
Sbjct:   196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query:   194 EMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKI 253
              MP RD +SWN+MI GY   G     L  F  M+   +  D  +L S + A  + G  ++
Sbjct:   256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query:   254 GKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVV 313
             G++IH  VI +G  +D+ V  SL  MY   G    AE+LF+ +  ++IV+W  M+ GY  
Sbjct:   316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query:   314 NAHFLESFSC-LRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNV 372
             N  FL   +    +M++ D++ PD IT+  +L +C  LG L  G  +H  AI+   +  V
Sbjct:   376 N--FLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433

Query:   373 ALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE 432
              +   LI+MY+    +     +F ++  KN++SW ++IA    N +  EA+ +F      
Sbjct:   434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKM 492

Query:   433 PLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA 492
              L+P+A+T  + L A A I  L    +IH+ + + G+  + ++ N+++ MY +CG + TA
Sbjct:   493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552

Query:   493 --------RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISG 544
                     +DV SWN+++  Y+  G G + ++LF  M +  ++P+E TF+SLL  CS S 
Sbjct:   553 WSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQ 612

Query:   545 MVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGAL 604
             MV +G  YF  M +DYG+ P ++HY C++DLLGR G L +A +FI++MP  P   +WGAL
Sbjct:   613 MVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGAL 671

Query:   605 LTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK 664
             L A R ++ I   E +A+H+    + + G Y+LL N+YA+ G+W +V +++ +M++ GL 
Sbjct:   672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731

Query:   665 KTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMK 724
                GCS  E  G+ H F++ D+ H +T  I  VL+    K+ E   +  +S+ S     +
Sbjct:   732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSE-VGLTKISESSSMDETE 790

Query:   725 -NRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRD 783
              +R +    HS R AI+FGLI+T  G P+ V  N  +CE+CH  VK IS+  +RE+ VRD
Sbjct:   791 ISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRD 850

Query:   784 PKCFHHFRNGCCSCGD 799
              + FHHF++G CSCGD
Sbjct:   851 AEHFHHFKDGECSCGD 866

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 262/733 (35%), Positives = 423/733 (57%)

Query:    82 GSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI 141
             G ++ A  +F+++       WN+++     +G F  ++    +M+  G + D +T+  V 
Sbjct:   143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query:   142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTV 201
             K+ + L  +  GE++HG + KSG      V NSL+  Y+K   V+ A ++FDEM  RD +
Sbjct:   203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262

Query:   202 SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQV 261
             SWNS+I GY S G     L  F +M   G+  D  +++S     +    + +G+ +H   
Sbjct:   263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query:   262 IKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESF 321
             +K+    +     +L+DMY KCG +D A+ +F  +  R++V++ +M+ GY       E+ 
Sbjct:   323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query:   322 SCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP-NVALETALID 380
                 +M E++ ++PD  T+  +L  C +   L EGK +H + I++  L  ++ +  AL+D
Sbjct:   383 KLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW-IKENDLGFDIFVSNALMD 440

Query:   381 MYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP-LKPDAM 439
             MYA  G+++  E +F  M  K+++SWN +I  Y +N    EA+ LF  L  E    PD  
Sbjct:   441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500

Query:   440 TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA------- 492
             T A +LPA A ++      +IH  I + G  S+ +++NS+V MYAKCG L  A       
Sbjct:   501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560

Query:   493 --RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGW 550
               +D+VSW V+I  Y +HG GK +I LF++MR+ GI+ +E +FVSLL +CS SG+VDEGW
Sbjct:   561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620

Query:   551 NYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRK 610
              +F+ MR +  I P +EHY CI+D+L R G+L +A RFIE MP  P A IWGALL   R 
Sbjct:   621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query:   611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCS 670
             ++D+  AE  A  V     +NTG YVL++N+YAEA +WE V++++  + + GL+K  GCS
Sbjct:   681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query:   671 MFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFS--PAHLMKNRAK 728
               E  G  + F+  D S+ +T  I   L  +  ++ E+ Y   ++K++   A  M+ + +
Sbjct:   741 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY-SPLTKYALIDAEEME-KEE 798

Query:   729 SPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFH 788
             +   HS +LA++ G+IS+  G  + V  N R+C DCH   K +S++T+RE+++RD   FH
Sbjct:   799 ALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFH 858

Query:   789 HFRNGCCSCGDYW 801
              F++G CSC  +W
Sbjct:   859 QFKDGHCSCRGFW 871

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 163/441 (36%), Positives = 252/441 (57%)

Query:   378 LIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPL- 434
             LIDMYA    +     +F S+   E+++V+W  MI  Y ++G   +A+EL  +++ E   
Sbjct:   413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query:   435 -KPDAMTFASILPAYAEIATLSDSMQIHS--LITKLGLVSNIYISNSIVYMYAKCGDLQT 491
              +P+A T +  L A A +A L    QIH+  L  +   V  +++SN ++ MYAKCG +  
Sbjct:   473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISD 531

Query:   492 ARDV---------VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSI 542
             AR V         V+W  ++  Y +HG G+ ++ +F EMR  G K +  T + +L +CS 
Sbjct:   532 ARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSH 591

Query:   543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWG 602
             SGM+D+G  YF+ M+  +G+ PG EHY C++DLLGR G L+ A R IEEMP  P   +W 
Sbjct:   592 SGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWV 651

Query:   603 ALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662
             A L+  R +  +   E+AA  +   A ++ G Y LLSN+YA AGRW+DV +I+++M  +G
Sbjct:   652 AFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKG 711

Query:   663 LKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHL 722
             +KK  GCS  E    T  F   D++H     IY VL   +++I +  Y+     F+  H 
Sbjct:   712 VKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETG-FA-LHD 769

Query:   723 MKNRAKSP--HHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI 780
             + +  K      HS +LA+++G+++T  G  + +  N R+C DCH+A   +S I   ++I
Sbjct:   770 VDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDII 829

Query:   781 VRDPKCFHHFRNGCCSCGDYW 801
             +RD   FHHF+NG CSC  YW
Sbjct:   830 LRDSSRFHHFKNGSCSCKGYW 850

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
 Identities = 267/771 (34%), Positives = 405/771 (52%)

Query:    48 KSTHI-HKNQTITSKKSIGPRNITK--TRALQELVSSGSMESACYLFEKMSYLDTYIWNV 104
             +ST I H  QT       G RN     T+  Q L   G++  A  +F  +   D +++NV
Sbjct:    29 RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query:   105 VIRGF-VDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS 163
             ++RGF V+         F H       K +  TY F I A +G      G  +HG     
Sbjct:    89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148

Query:   164 GLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFF 223
             G +S++ + ++++ MY K   VE A ++FD MP +DT+ WN+MI GY      V S+  F
Sbjct:   149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208

Query:   224 KEMQN--CGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYG 281
             +++ N  C  R D  +L+  L A++    L++G +IH    K+G      V T  + +Y 
Sbjct:   209 RDLINESC-TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query:   282 KCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRK-MLEDDNLNPDCITI 340
             KCG +     LF      +IVA+NAM+ GY  N     S S  ++ ML    L     T+
Sbjct:   268 KCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSS--TL 325

Query:   341 INLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE 400
             ++L+P     G L+   +IHGY ++  FL + ++ TAL  +Y+    ++   KLF    E
Sbjct:   326 VSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPE 382

Query:   401 KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQI 460
             K+L SWNAMI+ Y +NG   +A+ LF+++      P+ +T   IL A A++  LS    +
Sbjct:   383 KSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWV 442

Query:   461 HSLITKLGLVSNIYISNSIVYMYAKCG---------DLQTARDVVSWNVIIMAYAIHGLG 511
             H L+      S+IY+S +++ MYAKCG         DL T ++ V+WN +I  Y +HG G
Sbjct:   443 HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQG 502

Query:   512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC 571
             + ++ +F EM   GI P   TF+ +L +CS +G+V EG   F+SM   YG  P ++HY C
Sbjct:   503 QEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYAC 562

Query:   572 IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN 631
             ++D+LGR G+L +A +FIE M   P + +W  LL A R + D   A   +  +     DN
Sbjct:   563 MVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDN 622

Query:   632 TGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGET-HRFINQDRSHSK 690
              G +VLLSN+++    +     ++   +K  L K  G ++ E  GET H F + D+SH +
Sbjct:   623 VGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEI-GETPHVFTSGDQSHPQ 681

Query:   691 TYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGN 750
                IY  L+ L  K+ E  Y             + R      HS RLAI+FGLI+T  G 
Sbjct:   682 VKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGT 741

Query:   751 PVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
              + +  N R+C DCH+  K IS+IT+R ++VRD   FHHF++G CSCGDYW
Sbjct:   742 EIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 255/740 (34%), Positives = 409/740 (55%)

Query:    74 ALQELVSS-GSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKA 132
             AL ++ S  G +  A  +F++M   D   WN +I G+  +G ++EA+E +H +       
Sbjct:   146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query:   133 DYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMF 192
             D FT   V+ A   LL + +G+ +HG   KSG+NS V V N L+ MY+K      A R+F
Sbjct:   206 DSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVF 265

Query:   193 DEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLK 252
             DEM VRD+VS+N+MI GY  +     S+  F E  +   + D  ++ S L A      L 
Sbjct:   266 DEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLS 324

Query:   253 IGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYV 312
             + K I+  ++K+G  ++  V+  L+D+Y KCG +  A  +FN +  ++ V+WN+++ GY+
Sbjct:   325 LAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384

Query:   313 VNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNV 372
              +   +E+    + M+  +    D IT + L+   T+L  L  GK +H   I+ G   ++
Sbjct:   385 QSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDL 443

Query:   373 ALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE 432
             ++  ALIDMYA  G +  + K+F SM   + V+WN +I+A VR G     +++   +   
Sbjct:   444 SVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKS 503

Query:   433 PLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA 492
              + PD  TF   LP  A +A      +IH  + + G  S + I N+++ MY+KCG L+ +
Sbjct:   504 EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENS 563

Query:   493 ---------RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS 543
                      RDVV+W  +I AY ++G G+ +++ F++M + GI P+   F++++ +CS S
Sbjct:   564 SRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHS 623

Query:   544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGA 603
             G+VDEG   F+ M+  Y I P IEHY C++DLL R   + +A+ FI+ MP  P A IW +
Sbjct:   624 GLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683

Query:   604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663
             +L A R + D+ +AE  +R ++    D+ G  +L SN YA   +W+ V  I+  ++ + +
Sbjct:   684 VLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHI 743

Query:   664 KKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLM 723
              K  G S  E     H F + D S  ++  IY  L+IL   + ++ YI +  + S  +L 
Sbjct:   744 TKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQ-NLE 802

Query:   724 KNRAKSPH--HHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIV 781
             +   K      HS RLAI+FGL++T  G P+ V  N R+C DCH   K IS+I  RE++V
Sbjct:   803 EEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILV 862

Query:   782 RDPKCFHHFRNGCCSCGDYW 801
             RD   FH F++G CSC D W
Sbjct:   863 RDANRFHLFKDGTCSCKDRW 882

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 250/752 (33%), Positives = 407/752 (54%)

Query:    61 KKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVE 120
             K  +  +   +   +  L S G+++ A Y+F++MS  DT  WN +   +  NG  +E+  
Sbjct:   188 KSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFR 247

Query:   121 FHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYM 180
                 M     + +  T   ++     + +   G  +HG + K G +S V VCN+L+ MY 
Sbjct:   248 IFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYA 307

Query:   181 KLG-CVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLI 239
               G  VE A  +F +MP +D +SWNS++  + + G  + +L     M + G   +  +  
Sbjct:   308 GAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFT 366

Query:   240 SALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR 299
             SAL A       + G+ +H  V+ SGL  + ++  +LV MYGK G +  + R+   +  R
Sbjct:   367 SALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRR 426

Query:   300 NIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLE-GKS 358
             ++VAWNA++GGY  +    ++ +  + M   + ++ + IT++++L +C   G LLE GK 
Sbjct:   427 DVVAWNALIGGYAEDEDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLPGDLLERGKP 485

Query:   359 IHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQ 418
             +H Y +  GF  +  ++ +LI MYA  G L  ++ LF  +  +N+++WNAM+AA   +G 
Sbjct:   486 LHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 545

Query:   419 NREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNS 478
               E ++L   + S  +  D  +F+  L A A++A L +  Q+H L  KLG   + +I N+
Sbjct:   546 GEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNA 605

Query:   479 IVYMYAKCGDL---------QTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529
                MY+KCG++            R + SWN++I A   HG  +     F EM E GIKP 
Sbjct:   606 AADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPG 665

Query:   530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFI 589
               TFVSLL++CS  G+VD+G  Y+D + +D+G+ P IEH  C+IDLLGR G L +A+ FI
Sbjct:   666 HVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFI 725

Query:   590 EEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWE 649
              +MP  P   +W +LL + + + ++     AA ++     ++   YVL SNM+A  GRWE
Sbjct:   726 SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWE 785

Query:   650 DVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDF 709
             DVE ++  M  + +KK   CS  +   +   F   DR+H +T  IY  L+ + + I E  
Sbjct:   786 DVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESG 845

Query:   710 YIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVK 769
             Y+ + S+       + +  +  +HS RLA+++ L+ST  G+ V +  N RIC DCHS  K
Sbjct:   846 YVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYK 905

Query:   770 KISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
              +S +  R +++RD   FHHF  G CSC DYW
Sbjct:   906 FVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49619	PP350_ARATH	No assigned EC number	0.5802	0.9063	0.9029	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	801
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.0
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-138
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-72
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-58
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-45
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-26
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-14
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	8e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  584 bits (1506), Expect = 0.0
 Identities = 273/733 (37%), Positives = 425/733 (57%), Gaps = 11/733 (1%)

Query: 75  LQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADY 134
           L   V  G +  A Y+F KM   D + WNV++ G+   G F EA+  +HRM+  G + D 
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187

Query: 135 FTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDE 194
           +T+P V++ C G+  L+ G +VH  + + G   DV V N+LI MY+K G V  A  +FD 
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247

Query: 195 MPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIG 254
           MP RD +SWN+MI GY   G+ +  L  F  M+   +  D  ++ S + A  + G  ++G
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

Query: 255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVN 314
           +E+H  V+K+G  +DV V  SL+ MY   G    AE++F+ +  ++ V+W AM+ GY  N
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367

Query: 315 AHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVAL 374
               +       ++E DN++PD ITI ++L +C  LG L  G  +H  A RKG +  V +
Sbjct: 368 G-LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426

Query: 375 ETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPL 434
             ALI+MY+    +    ++F ++ EK+++SW ++IA    N +  EA+  F+ +    L
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485

Query: 435 KPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA-- 492
           KP+++T  + L A A I  L    +IH+ + + G+  + ++ N+++ +Y +CG +  A  
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545

Query: 493 ------RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMV 546
                 +DVVSWN+++  Y  HG G ++++LF+ M E G+ P+E TF+SLL +CS SGMV
Sbjct: 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605

Query: 547 DEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT 606
            +G  YF SM + Y I P ++HY C++DLLGR G L +A  FI +MP  P   +WGALL 
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665

Query: 607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKT 666
           A R +  +   E AA+H+     ++ G Y+LL N+YA+AG+W++V +++  M + GL   
Sbjct: 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725

Query: 667 TGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNR 726
            GCS  E  G+ H F+  D SH +   I  VL+    K+       + S      +  ++
Sbjct: 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSK 784

Query: 727 AKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKC 786
                 HS RLAI+FGLI+T  G P+ V  N  +CE+CH+ VK IS+I +RE+ VRD + 
Sbjct: 785 DDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQ 844

Query: 787 FHHFRNGCCSCGD 799
           FHHF++G CSCGD
Sbjct: 845 FHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  424 bits (1092), Expect = e-138
 Identities = 193/578 (33%), Positives = 325/578 (56%), Gaps = 15/578 (2%)

Query: 233 YDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERL 292
           YD  +L+ A  A+    C+K    ++  V  SG E D  +   ++ M+ KCG++  A RL
Sbjct: 126 YD--ALVEACIALKSIRCVK---AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180

Query: 293 FNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGA 352
           F+ +  RN+ +W  ++GG V   ++ E+F+  R+M ED + + +  T + +L +   LG+
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGS 239

Query: 353 LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAA 412
              G+ +H   ++ G + +  +  ALIDMY+  G ++    +F  M EK  V+WN+M+A 
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299

Query: 413 YVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSN 472
           Y  +G + EA+ L+ ++    +  D  TF+ ++  ++ +A L  + Q H+ + + G   +
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359

Query: 473 IYISNSIVYMYAKCGDLQTARDV---------VSWNVIIMAYAIHGLGKISIQLFSEMRE 523
           I  + ++V +Y+K G ++ AR+V         +SWN +I  Y  HG G  ++++F  M  
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419

Query: 524 KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLD 583
           +G+ PN  TF+++LS+C  SG+ ++GW  F SM +++ I P   HY C+I+LLGR G LD
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479

Query: 584 QAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA 643
           +A   I   P  PT  +W ALLTA R + ++     AA  +     +    YV+L N+Y 
Sbjct: 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539

Query: 644 EAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLR 703
            +GR  +  ++   ++++GL     C+  E   + H F + DR H ++  IY  LD L++
Sbjct: 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599

Query: 704 KIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICED 763
           +I E  Y+   ++  P         S  +HS +LAI+FGLI+TS   P+ +  + RIC+D
Sbjct: 600 EISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKD 659

Query: 764 CHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801
           CH  +K I+ +TKRE++VRD   FHHF+ G CSCGDYW
Sbjct: 660 CHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  253 bits (647), Expect = 3e-72
 Identities = 147/523 (28%), Positives = 252/523 (48%), Gaps = 25/523 (4%)

Query: 36  PTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMS 95
             P F  N          +  +  +   +   N    +  + L  + S  S        S
Sbjct: 2   QPPHFYLNPGKPNL---FQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSS--------S 50

Query: 96  YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEK 155
             D+   N  +R    +G  ++A++    M       D   Y  + + C     + EG +
Sbjct: 51  THDS---NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107

Query: 156 VHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGD 215
           V      S  +  V + N+++ M+++ G +  A  +F +MP RD  SWN ++GGY   G 
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167

Query: 216 GVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS 275
              +L  +  M   G+R D ++    L        L  G+E+H  V++ G E+DV V  +
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

Query: 276 LVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP 335
           L+ MY KCG V  A  +F+ +  R+ ++WNAM+ GY  N   LE       M E   ++P
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDP 286

Query: 336 DCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLF 395
           D +TI +++ +C  LG    G+ +HGY ++ GF  +V++  +LI MY   G+    EK+F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346

Query: 396 GSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLS 455
             M  K+ VSW AMI+ Y +NG   +A+E +  +  + + PD +T AS+L A A +  L 
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406

Query: 456 DSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA---------RDVVSWNVIIMAYA 506
             +++H L  + GL+S + ++N+++ MY+KC  +  A         +DV+SW  II    
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466

Query: 507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEG 549
           ++     ++  F +M    +KPN  T ++ LS+C+  G +  G
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  211 bits (539), Expect = 1e-58
 Identities = 108/343 (31%), Positives = 186/343 (54%), Gaps = 2/343 (0%)

Query: 106 IRGFVDNGLFQEAVE-FHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSG 164
           I   V  G  +EA+E F        F     TY  +++AC  L  +   + V+  +  SG
Sbjct: 94  IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153

Query: 165 LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFK 224
              D Y+ N +++M++K G +  A R+FDEMP R+  SW ++IGG    G+   +   F+
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213

Query: 225 EMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCG 284
           EM   G   +  + +  L A +  G  + G+++HC V+K+G+  D  V  +L+DMY KCG
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273

Query: 285 VVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLL 344
            ++ A  +F+ +  +  VAWN+M+ GY ++ +  E+     +M  D  ++ D  T   ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMI 332

Query: 345 PSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLV 404
              ++L  L   K  H   IR GF  ++   TAL+D+Y+  G ++    +F  M  KNL+
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392

Query: 405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPA 447
           SWNA+IA Y  +G+  +A+E+F+ + +E + P+ +TF ++L A
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  174 bits (442), Expect = 1e-45
 Identities = 119/438 (27%), Positives = 206/438 (47%), Gaps = 50/438 (11%)

Query: 66  PRNITKTRALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRM 125
           P      R L   V  G +  A  LF++M   +   W  +I G VD G ++EA      M
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM 215

Query: 126 VCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCV 185
             +G  A+  T+  +++A AGL     G+++H  + K+G+  D +V  +LI MY K G +
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275

Query: 186 ECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAI 245
           E A  +FD MP + TV+WNSM+ GY   G    +L  + EM++ G+  D+F+    +   
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335

Query: 246 SIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN 305
           S    L+  K+ H  +I++G  +D++  T+LVD+Y K G ++ A  +F+ +  +N+++WN
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395

Query: 306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSI------ 359
           A++ GY  +    ++     +M+  + + P+ +T + +L +C   G   +G  I      
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454

Query: 360 -HG-------YA------------------IRKG-FLPNVALETALIDMYAGSGALKM-- 390
            H        YA                  IR+  F P V +  AL+        L++  
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514

Query: 391 --TEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448
              EKL+G   EK L ++  ++  Y  +G+  EA ++ + L  + L        S+ PA 
Sbjct: 515 LAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL--------SMHPAC 565

Query: 449 AEIATLSDSMQIHSLITK 466
             I  +    Q HS  + 
Sbjct: 566 TWI-EVKK--QDHSFFSG 580

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  114 bits (286), Expect = 5e-26
 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 12/316 (3%)

Query: 305 NAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAI 364
           N+ +     +    ++   L  M E   +  D    + L   C    A+ EG  +   A+
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113

Query: 365 RKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME 424
                  V L  A++ M+   G L     +FG M E++L SWN ++  Y + G   EA+ 
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173

Query: 425 LFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484
           L+  +    ++PD  TF  +L     I  L+   ++H+ + + G   ++ + N+++ MY 
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233

Query: 485 KCGDLQTAR---------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS 535
           KCGD+ +AR         D +SWN +I  Y  +G     ++LF  MRE  + P+  T  S
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293

Query: 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA 595
           ++S+C + G    G      + K  G    +     +I +   +G+  +A++    M   
Sbjct: 294 VISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ET 351

Query: 596 PTARIWGALLTASRKN 611
             A  W A+++   KN
Sbjct: 352 KDAVSWTAMISGYEKN 367

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 76.8 bits (189), Expect = 3e-14
 Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)

Query: 327 MLEDDNLNPDCITIINLLPSCTKLG---ALLEGKSIHGYAIRKGFLPNVALETALIDMYA 383
           ++++  L  DC     L+ +C K G   A+ E   +    +  G   NV    ALID  A
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFE---VFHEMVNAGVEANVHTFGALIDGCA 518

Query: 384 GSGALKMTEKLFGSMIEKNL----VSWNAMIAAYVRNGQNREAMELFQDLWSE--PLKPD 437
            +G +      +G M  KN+    V +NA+I+A  ++G    A ++  ++ +E  P+ PD
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578

Query: 438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVS 497
            +T  +++ A A    +  + +++ +I +  +     +    V   ++ GD   A  +  
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI-- 636

Query: 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR 557
                               + +M++KG+KP+E  F +L+     +G +D+ +      R
Sbjct: 637 --------------------YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

Query: 558 KDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA---PTARIWGALLTA 607
           K  GI  G   Y  ++       N  +A    E++ S    PT     AL+TA
Sbjct: 677 KQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728

Length = 1060

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 733 HSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFR 791
           H+ + A+++GL++T +     ++   R+C DCH   + I++ T RE+IVRDP  FHHF+
Sbjct: 63  HAEKQALAYGLLTTRI-----IKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.4 bits (162), Expect = 4e-11
 Identities = 91/421 (21%), Positives = 174/421 (41%), Gaps = 66/421 (15%)

Query: 181 KLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD-RF--S 237
           K   V+ A R    +      ++N ++    S  D   +L   + +Q  GL+ D +   +
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477

Query: 238 LISALGAISIEGCLKIGK-----EIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERL 292
           LIS         C K GK     E+  +++ +G+E +V    +L+D   + G V  A   
Sbjct: 478 LIST--------CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529

Query: 293 FNMIFPRNI----VAWNAMV-----GGYVVNAHFLESFSCLRKM-LEDDNLNPDCITIIN 342
           + ++  +N+    V +NA++      G V  A     F  L +M  E   ++PD IT+  
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRA-----FDVLAEMKAETHPIDPDHITVGA 584

Query: 343 LLPSCTKLG----ALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM 398
           L+ +C   G    A    + IH Y I KG      + T  ++  +  G       ++  M
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNI-KGTP---EVYTIAVNSCSQKGDWDFALSIYDDM 640

Query: 399 IEKNL----VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATL 454
            +K +    V ++A++      G   +A E+ QD   + +K   ++++S++ A +     
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700

Query: 455 SDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKIS 514
             +++++  I  + L   +   N++  + A C   Q  +                    +
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNAL--ITALCEGNQLPK--------------------A 738

Query: 515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574
           +++ SEM+  G+ PN  T+  LL +       D G +     ++D GI P +    CI  
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITG 797

Query: 575 L 575
           L
Sbjct: 798 L 798

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 397 SMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE-PLKPDAMTFASILPAYAEIATLS 455
           + I K+ VS  + I   V  G++REA+ELF+ L +  P    A T+ +++ A   + ++ 
Sbjct: 81  TQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR 140

Query: 456 DSMQIHSLITKLGLVSNIYISNSIVYMYAKCG---------DLQTARDVVSWNVIIMAYA 506
               ++  +   G   + Y+ N ++ M+ KCG         D    R++ SW  II    
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200

Query: 507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI 566
             G  + +  LF EM E G      TFV +L + +  G    G      + K  G+V G 
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVV-GD 258

Query: 567 EHYGC-IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTA 607
               C +ID+  + G+++ A+   + MP   T   W ++L  
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA-WNSMLAG 299

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.9 bits (131), Expect = 1e-09
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSC 540
           DVV++N +I  Y   G  + +++LF+EM+++GIKPN  T+  L+   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 6e-08
 Identities = 12/49 (24%), Positives = 29/49 (59%)

Query: 401 KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYA 449
            ++V++N +I  Y + G+  EA++LF ++    +KP+  T++ ++    
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.9 bits (110), Expect = 9e-07
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 98  DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACA 145
           D   +N +I G+   G  +EA++  + M   G K + +TY  +I    
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 168 DVYVCNSLIVMYMKLGCVECAERMFDEMPVR----DTVSWNSMIGGYC 211
           DV   N+LI  Y K G VE A ++F+EM  R    +  +++ +I G C
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 199 DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFS---LISAL 242
           D V++N++I GYC  G    +L  F EM+  G++ + ++   LI  L
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGL 231
           V++NS+I GYC  G    +L  FKEM+  G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 10/26 (38%), Positives = 21/26 (80%)

Query: 404 VSWNAMIAAYVRNGQNREAMELFQDL 429
           V++N++I+ Y + G+  EA+ELF+++
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGI 526
           V++N +I  Y   G  + +++LF EM+EKG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 100 YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKAD 133
             +N +I G    G  +EA+E    M   G + D
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 100 YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGF 130
             +N +I G+   G  +EA+E    M  +G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD 234
           V++N++I G C  G    +L  FKEM+  G+  D
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE 530
           V++N +I      G  + +++LF EM+E+GI+P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	801
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.87
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.81
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.72
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.69
PRK14574	822	hmsH outer membrane protein; Provisional	99.68
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.54
KOG2003	840	consensus TPR repeat-containing protein [General f	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.51
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.5
KOG2076	895	consensus RNA polymerase III transcription factor	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.42
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.42
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.39
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.27
KOG2003	840	consensus TPR repeat-containing protein [General f	99.27
KOG1126	638	consensus DNA-binding cell division cycle control	99.26
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.26
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.25
PF13041	50	PPR_2: PPR repeat family	99.25
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.23
PF13041	50	PPR_2: PPR repeat family	99.21
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.2
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.19
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.19
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.16
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.09
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.06
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.05
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.04
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.0
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.95
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.95
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.94
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.92
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.91
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.91
PRK12370	553	invasion protein regulator; Provisional	98.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.87
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.81
KOG1129	478	consensus TPR repeat-containing protein [General f	98.8
PRK12370	553	invasion protein regulator; Provisional	98.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.61
KOG1129	478	consensus TPR repeat-containing protein [General f	98.61
PRK11189	296	lipoprotein NlpI; Provisional	98.6
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.54
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.54
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.53
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.52
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.5
PF12854	34	PPR_1: PPR repeat	98.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.5
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.47
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.47
PF12854	34	PPR_1: PPR repeat	98.4
PRK15359	144	type III secretion system chaperone protein SscB;	98.37
KOG1125	579	consensus TPR repeat-containing protein [General f	98.36
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.33
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.26
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.26
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.14
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.14
PRK15359	144	type III secretion system chaperone protein SscB;	98.13
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.13
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.12
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.11
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.11
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.11
PRK04841	903	transcriptional regulator MalT; Provisional	98.1
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.09
PLN02789	320	farnesyltranstransferase	98.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.03
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.97
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.96
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.94
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.94
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.91
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.9
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.85
KOG1125	579	consensus TPR repeat-containing protein [General f	97.84
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.8
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.74
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.69
PLN02789	320	farnesyltranstransferase	97.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.65
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.58
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.44
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.4
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.35
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.33
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.2
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.17
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.16
KOG0553	304	consensus TPR repeat-containing protein [General f	97.08
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.02
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.01
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.99
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.97
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.96
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.95
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.91
PF13431	34	TPR_17: Tetratricopeptide repeat	96.9
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.87
KOG0553	304	consensus TPR repeat-containing protein [General f	96.86
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.84
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.74
PF12688	120	TPR_5: Tetratrico peptide repeat	96.74
PRK15331	165	chaperone protein SicA; Provisional	96.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.68
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.63
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.56
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.53
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.52
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.52
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.44
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.39
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.32
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.29
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.27
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.13
PRK10803	263	tol-pal system protein YbgF; Provisional	96.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.08
PF13428	44	TPR_14: Tetratricopeptide repeat	96.03
PF12688	120	TPR_5: Tetratrico peptide repeat	96.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.02
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.94
PRK10803	263	tol-pal system protein YbgF; Provisional	95.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.8
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.7
PF13371	73	TPR_9: Tetratricopeptide repeat	95.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.57
KOG4555	175	consensus TPR repeat-containing protein [Function	95.56
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.5
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.5
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.39
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.31
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.68
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.43
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.37
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.37
PRK11906	458	transcriptional regulator; Provisional	94.33
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.28
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.26
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.19
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.83
KOG3941	406	consensus Intermediate in Toll signal transduction	93.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.61
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	93.59
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.52
PRK11906	458	transcriptional regulator; Provisional	93.34
KOG3941	406	consensus Intermediate in Toll signal transduction	93.18
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	93.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.01
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.93
PF13512	142	TPR_18: Tetratricopeptide repeat	92.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.6
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.42
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.21
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.11
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.07
PRK15331	165	chaperone protein SicA; Provisional	90.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.61
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.57
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.13
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.62
PF13512	142	TPR_18: Tetratricopeptide repeat	89.15
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.81
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.59
KOG1258	577	consensus mRNA processing protein [RNA processing	88.56
KOG2610	491	consensus Uncharacterized conserved protein [Funct	88.45
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.14
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.13
PRK09687	280	putative lyase; Provisional	87.88
PRK09687	280	putative lyase; Provisional	87.52
KOG1585	308	consensus Protein required for fusion of vesicles	87.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.38
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	87.35
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.72
KOG4234	271	consensus TPR repeat-containing protein [General f	86.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.46
PF13428	44	TPR_14: Tetratricopeptide repeat	86.46
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.41
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.42
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	84.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	83.2
KOG4555	175	consensus TPR repeat-containing protein [Function	82.87
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	82.48
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	82.19
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.66

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2e-148  Score=1317.24  Aligned_cols=730  Identities=37%  Similarity=0.696  Sum_probs=718.3

Q ss_pred             CChhHH-HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 003710           67 RNITKT-RALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACA  145 (801)
Q Consensus        67 ~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  145 (801)
                      .+..+. .|+++|+++|+++.|+++|++|+++|+++||++|.+|++.|++++|+++|++|...|+.||.+||+++|++|+
T Consensus       119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~  198 (857)
T PLN03077        119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG  198 (857)
T ss_pred             CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence            344444 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHH
Q 003710          146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKE  225 (801)
Q Consensus       146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~  225 (801)
                      +.+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH
Q 003710          226 MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN  305 (801)
Q Consensus       226 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~  305 (801)
                      |.+.|+.||..||+.+|.+|++.|+++.|+++|..|.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n  358 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT  358 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 003710          306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGS  385 (801)
Q Consensus       306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~  385 (801)
                      +||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~  437 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            9999999999999999999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710          386 GALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT  465 (801)
Q Consensus       386 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~  465 (801)
                      |++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.++|..+.
T Consensus       438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999985 699999999999999999999999999999999


Q ss_pred             HhCCCCchHHHHHHHHHHHhcCCccccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710          466 KLGLVSNIYISNSIVYMYAKCGDLQTAR--------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL  537 (801)
Q Consensus       466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  537 (801)
                      +.|+.++..++|+||++|+|+|++++|.        |+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|
T Consensus       517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            9999999999999999999999999997        88999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 003710          538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSA  617 (801)
Q Consensus       538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a  617 (801)
                      .+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|+++||.+++++|+.+||..+|++|+++|+.+|+.+.|
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHH
Q 003710          618 EFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNV  697 (801)
Q Consensus       618 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~  697 (801)
                      +.+++++++++|++...|++|+++|+..|+|++|.++++.|+++|++|+||+||||+++++|.|++||++||+.++||+.
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~  756 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV  756 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccccCCccccccchhhhccccccchHHHHHHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccce
Q 003710          698 LDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKR  777 (801)
Q Consensus       698 l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r  777 (801)
                      |++|..+|++.||+||+..++++ +|++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||||++|
T Consensus       757 l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r  835 (857)
T PLN03077        757 LEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRR  835 (857)
T ss_pred             HHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCe
Confidence            99999999999999999988844 77899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCccccccccccCCCC
Q 003710          778 ELIVRDPKCFHHFRNGCCSCGD  799 (801)
Q Consensus       778 ~i~~rd~~~~h~f~~g~csc~~  799 (801)
                      ||||||++|||||+||+|||||
T Consensus       836 ~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        836 EISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             EEEEecCCcceeCCCCcccCCC
Confidence            9999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6.9e-129  Score=1123.23  Aligned_cols=613  Identities=34%  Similarity=0.608  Sum_probs=591.7

Q ss_pred             CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhH
Q 003710           96 YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEG-FKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNS  174 (801)
Q Consensus        96 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  174 (801)
                      .++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.+||.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4577899999999999999999999999998765 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 003710          175 LIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIG  254 (801)
Q Consensus       175 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a  254 (801)
                      |+++|+++|++++|+++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003710          255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLN  334 (801)
Q Consensus       255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~  334 (801)
                      +++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+. |+.
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~  322 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVS  322 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 003710          335 PDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYV  414 (801)
Q Consensus       335 pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~  414 (801)
                      ||..||++++.+|++.|++++|.++|+.|.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998777777777777666


Q ss_pred             HcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch
Q 003710          415 RNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD  494 (801)
Q Consensus       415 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d  494 (801)
                      ++|+.++|+++|+                                                                   
T Consensus       403 ~~G~~~~A~~lf~-------------------------------------------------------------------  415 (697)
T PLN03081        403 NHGRGTKAVEMFE-------------------------------------------------------------------  415 (697)
T ss_pred             HcCCHHHHHHHHH-------------------------------------------------------------------
Confidence            6666555555554                                                                   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710          495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID  574 (801)
Q Consensus       495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~  574 (801)
                                               +|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|++
T Consensus       416 -------------------------~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        416 -------------------------RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             -------------------------HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence                                     4555678899999999999999999999999999999988899999999999999


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710          575 LLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      +|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchhhhccccccch
Q 003710          655 KAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHS  734 (801)
Q Consensus       655 ~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hs  734 (801)
                      ++.|+++|++|.||+|||++++++|.|++||.+||+.++||+.|++|..+|++.||.||+.+++|++++++|+..+++||
T Consensus       551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hs  630 (697)
T PLN03081        551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS  630 (697)
T ss_pred             HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccceEEEEeCCCccccccccccCCCCCC
Q 003710          735 VRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW  801 (801)
Q Consensus       735 e~la~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w  801 (801)
                      ||||+|||||++|+|+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus       631 ekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        631 EKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             HHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-84  Score=772.15  Aligned_cols=678  Identities=26%  Similarity=0.373  Sum_probs=599.2

Q ss_pred             CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH
Q 003710           96 YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL  175 (801)
Q Consensus        96 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  175 (801)
                      .++..++|.+|.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.+..|.++|..+.+.|..++..++|+|
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            45666789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710          176 IVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK  255 (801)
Q Consensus       176 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~  255 (801)
                      +.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++++.+.
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~  207 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR  207 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003710          256 EIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP  335 (801)
Q Consensus       256 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p  335 (801)
                      ++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+. |+.|
T Consensus       208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~P  286 (857)
T PLN03077        208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDP  286 (857)
T ss_pred             HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003710          336 DCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVR  415 (801)
Q Consensus       336 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  415 (801)
                      |.+||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus       287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~  366 (857)
T PLN03077        287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK  366 (857)
T ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--
Q 003710          416 NGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--  493 (801)
Q Consensus       416 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~--  493 (801)
                      .|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..+||+||++|+++|++++|.  
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v  446 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV  446 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 003710          494 -------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI  566 (801)
Q Consensus       494 -------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~  566 (801)
                             |+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.|.+++..+.+. |+.++.
T Consensus       447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~  524 (857)
T PLN03077        447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDG  524 (857)
T ss_pred             HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccc
Confidence                   888999999999999999999999999986 69999999999999999999999999999999876 999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccC-CCCchhHHHHHHHHHHc
Q 003710          567 EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSA-QDNTGCYVLLSNMYAEA  645 (801)
Q Consensus       567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~  645 (801)
                      .++++|+++|+++|++++|.++|++|  +||..+|++++.+|.++|+.++|..+++++.+.. .+|..+|..++.+|++.
T Consensus       525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  602 (857)
T PLN03077        525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS  602 (857)
T ss_pred             eechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence            99999999999999999999999999  8999999999999999999999999999998753 45788899999999999


Q ss_pred             CCchHHHHHHHHHH-HCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchh
Q 003710          646 GRWEDVEQIKAIME-KEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMK  724 (801)
Q Consensus       646 g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~  724 (801)
                      |++++|.++|+.|+ +.|+.|+... +.       ..+.....-+.       +++..+.+++.+..||...+..-+..-
T Consensus       603 g~v~ea~~~f~~M~~~~gi~P~~~~-y~-------~lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac  667 (857)
T PLN03077        603 GMVTQGLEYFHSMEEKYSITPNLKH-YA-------CVVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNAC  667 (857)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCchHH-HH-------HHHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            99999999999999 5688765321 00       00000000111       223333334446778765443222110


Q ss_pred             hhccccccc---hHHHH-HHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccceEEE-------EeCCCcccccccc
Q 003710          725 NRAKSPHHH---SVRLA-ISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI-------VRDPKCFHHFRNG  793 (801)
Q Consensus       725 ~~~~~~~~h---se~la-~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r~i~-------~rd~~~~h~f~~g  793 (801)
                      .    ....   .|+.| ..+.+-...++..+.+.+=.--.++...+.|....+..+.+-       |--.+..|-|..|
T Consensus       668 ~----~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~  743 (857)
T PLN03077        668 R----IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD  743 (857)
T ss_pred             H----HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecC
Confidence            0    0011   12222 234444443444443333334567778888887777666542       2234688999877


Q ss_pred             ccCC
Q 003710          794 CCSC  797 (801)
Q Consensus       794 ~csc  797 (801)
                      .-|.
T Consensus       744 d~~h  747 (857)
T PLN03077        744 DESH  747 (857)
T ss_pred             CCCC
Confidence            6554

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.7e-70  Score=632.81  Aligned_cols=516  Identities=16%  Similarity=0.226  Sum_probs=473.1

Q ss_pred             ChhHHHHHHHHHcCCChHHHHHHHhhCCCCChh-----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003710           68 NITKTRALQELVSSGSMESACYLFEKMSYLDTY-----IWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIK  142 (801)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  142 (801)
                      ...+..+++.|++.|++++|+++|++|+.++.+     .++.++.+|.+.|..++|+.+|+.|..    ||..+|+.+|.
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~  445 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS  445 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence            344448889999999999999999999876554     456678889999999999999999974    99999999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC----CCCcccHHHHHHHHHcCCChhh
Q 003710          143 ACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP----VRDTVSWNSMIGGYCSVGDGVS  218 (801)
Q Consensus       143 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~  218 (801)
                      +|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|.    .||.++||+||.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            999999999999999999999999999999999999999999999999999998    6899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc
Q 003710          219 SLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIK--SGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI  296 (801)
Q Consensus       219 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m  296 (801)
                      |+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+  .|+.||..+|++||++|+++|++++|.++|++|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987  689999999999999999999999999999999


Q ss_pred             CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 003710          297 FP----RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNV  372 (801)
Q Consensus       297 ~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~  372 (801)
                      .+    ++.++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.++|+.|.+.|+.||.
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            54    57799999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHccCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710          373 ALETALIDMYAGSGALKMTEKLFGSMI----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY  448 (801)
Q Consensus       373 ~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~  448 (801)
                      .+|++||++|+++|++++|.++|++|.    .||.++||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999994    6899999999999999999999999999999999999999999999999


Q ss_pred             HhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710          449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY----AKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK  524 (801)
Q Consensus       449 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  524 (801)
                      ++.|+++.|.++|++|.+.|+.||..+|++|+.++    .++++..++  ...|+. .......+..++|+.+|++|++.
T Consensus       765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~--v~~f~~-g~~~~~n~w~~~Al~lf~eM~~~  841 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP--VVSFDS-GRPQIENKWTSWALMVYRETISA  841 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhc-cccccccchHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999874    445554433  344432 22233345567899999999999


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003710          525 GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS  594 (801)
Q Consensus       525 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~  594 (801)
                      |+.||..||+.+|.+++..+..+.+..+++.|... +..|+..+|++||+++++.  .++|..++++|..
T Consensus       842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~  908 (1060)
T PLN03218        842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS  908 (1060)
T ss_pred             CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence            99999999999998887888888888888877654 6777889999999998542  4789999999964

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.3e-66  Score=599.79  Aligned_cols=512  Identities=17%  Similarity=0.219  Sum_probs=461.6

Q ss_pred             CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHH
Q 003710          130 FKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGL-NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIG  208 (801)
Q Consensus       130 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~  208 (801)
                      -.++...|..++..|++.|++++|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            356777899999999999999999999999999986 5678888899999999999999999999999999999999999


Q ss_pred             HHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHH
Q 003710          209 GYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDY  288 (801)
Q Consensus       209 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  288 (801)
                      +|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 003710          289 AERLFNMIF----PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLED-DNLNPDCITIINLLPSCTKLGALLEGKSIHGYA  363 (801)
Q Consensus       289 A~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~  363 (801)
                      |.++|++|.    .||.++||.||.+|++.|++++|.++|.+|... .|+.||.+||+++|.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999993    489999999999999999999999999999762 378999999999999999999999999999999


Q ss_pred             HHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710          364 IRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM  439 (801)
Q Consensus       364 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~  439 (801)
                      .+.|+.|+..+||++|.+|++.|++++|.++|++|.    .+|.++|+++|.+|++.|++++|+++|++|.+.|+.||..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            999999999999999999999999999999999995    4688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710          440 TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFS  519 (801)
Q Consensus       440 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~  519 (801)
                      +|+++|.+|++.|++++|.++|+.|.+.|+.||..                      +||+||.+|++.|+.++|+++|+
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv----------------------tyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS----------------------TMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH----------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999888754                      55666666666677777799999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC---------------
Q 003710          520 EMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLG----RIG---------------  580 (801)
Q Consensus       520 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g---------------  580 (801)
                      +|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++.    +++               
T Consensus       744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~  822 (1060)
T PLN03218        744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ  822 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            9999999999999999999999999999999999999876 99999999999998743    222               


Q ss_pred             ----CHHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCCCchhHHHHHHHHHHcCCc-hHH
Q 003710          581 ----NLDQAKRFIEEMPS---APTARIWGALLTASRKNNDIVSAEFAARHVL-SSAQDNTGCYVLLSNMYAEAGRW-EDV  651 (801)
Q Consensus       581 ----~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~-~~a  651 (801)
                          ..++|..+|++|..   .||..+|+.++.++...++.+.+..+++.+. .-.+++..+|..|++.+   |++ ++|
T Consensus       823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A  899 (1060)
T PLN03218        823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRA  899 (1060)
T ss_pred             cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHH
Confidence                24679999999975   5999999999987778888888888887654 34567788999999987   443 589


Q ss_pred             HHHHHHHHHCCCccCC
Q 003710          652 EQIKAIMEKEGLKKTT  667 (801)
Q Consensus       652 ~~~~~~m~~~g~~~~~  667 (801)
                      ..++++|...|+.|+.
T Consensus       900 ~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        900 FSLLEEAASLGVVPSV  915 (1060)
T ss_pred             HHHHHHHHHcCCCCCc
Confidence            9999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.4e-62  Score=564.69  Aligned_cols=479  Identities=20%  Similarity=0.308  Sum_probs=436.5

Q ss_pred             CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 003710          197 VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS  275 (801)
Q Consensus       197 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~  275 (801)
                      .++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|++.|+.||..+||.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4577899999999999999999999999998764 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHH
Q 003710          276 LVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLE  355 (801)
Q Consensus       276 li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~  355 (801)
                      |+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|.++.
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q 003710          356 GKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLK  435 (801)
Q Consensus       356 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  435 (801)
                      +.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHH
Q 003710          436 PDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISI  515 (801)
Q Consensus       436 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~  515 (801)
                      ||..||++++.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+|+|++++|                      .
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A----------------------~  380 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----------------------R  380 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH----------------------H
Confidence            999999999999999999999999999999999999999999999999998888877                      8


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 003710          516 QLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-  594 (801)
Q Consensus       516 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-  594 (801)
                      ++|++|.    +||.+||++++.+|++.|+.++|.++|++|.+. |+.||..+|++++.+|.+.|.+++|.++|+.|.. 
T Consensus       381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            9999995    589999999999999999999999999999976 9999999999999999999999999999999953 


Q ss_pred             ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710          595 ---APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSM  671 (801)
Q Consensus       595 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  671 (801)
                         .|+..+|+.++.++.+.|++++|.++++++-  ..++..+|..|+.+|...|+++.|.++++.+.+.+.  ....++
T Consensus       456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--~~~~~y  531 (697)
T PLN03081        456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--EKLNNY  531 (697)
T ss_pred             cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--CCCcch
Confidence               5999999999999999999999999987642  234677899999999999999999999999865432  211111


Q ss_pred             EEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccc
Q 003710          672 FEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFS  718 (801)
Q Consensus       672 ~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~  718 (801)
                      +.+       +.......+.    +...++.+.|++.|+.+.....+
T Consensus       532 ~~L-------~~~y~~~G~~----~~A~~v~~~m~~~g~~k~~g~s~  567 (697)
T PLN03081        532 VVL-------LNLYNSSGRQ----AEAAKVVETLKRKGLSMHPACTW  567 (697)
T ss_pred             HHH-------HHHHHhCCCH----HHHHHHHHHHHHcCCccCCCeeE
Confidence            110       0011112222    24467889999999986555433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.7e-31  Score=321.39  Aligned_cols=572  Identities=13%  Similarity=0.059  Sum_probs=289.2

Q ss_pred             HHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHH
Q 003710           77 ELVSSGSMESACYLFEKMSYL---DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEG  153 (801)
Q Consensus        77 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  153 (801)
                      .+...|++++|...|+++...   +...+..+...+...|++++|...|.++.+.. +.+...+..+...+...|+.++|
T Consensus       270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A  348 (899)
T TIGR02917       270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA  348 (899)
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence            334556666666666554321   12223333444555566666666666555432 22333444455555556666666


Q ss_pred             HHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC
Q 003710          154 EKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG  230 (801)
Q Consensus       154 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  230 (801)
                      .+.+..+.+.. ..+...+..+...|.+.|++++|.++|+++..   .+...|..+...+...|++++|++.|+++.+..
T Consensus       349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  427 (899)
T TIGR02917       349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD  427 (899)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence            66665555443 23444555555566666666666666655431   233445555555555566666666555554432


Q ss_pred             CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHH
Q 003710          231 LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAM  307 (801)
Q Consensus       231 ~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~l  307 (801)
                      ... ......++..+.+.|+.++|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+++..   .+...+..+
T Consensus       428 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  505 (899)
T TIGR02917       428 PEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL  505 (899)
T ss_pred             Ccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            111 1223334444555555555555555554432 23444555555555555555555555555421   233444455


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 003710          308 VGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGA  387 (801)
Q Consensus       308 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~  387 (801)
                      ...+...|++++|.+.|+++...  .+.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|+
T Consensus       506 a~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  582 (899)
T TIGR02917       506 ARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ  582 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC
Confidence            55555555555555555555543  12233444455555555555555555555554443 2234444555555555555


Q ss_pred             hHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHH
Q 003710          388 LKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLI  464 (801)
Q Consensus       388 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~  464 (801)
                      .++|..+++.+..   .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+
T Consensus       583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (899)
T TIGR02917       583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA  661 (899)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555555431   234455555555555555555555555554421 122334444445555555555555555555


Q ss_pred             HHhCCCCchHHHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003710          465 TKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST  532 (801)
Q Consensus       465 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  532 (801)
                      .+.. +.+...+..++..+.+.|++++|.            +...|..+...+...|++++|++.|+++...  .|+..+
T Consensus       662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~  738 (899)
T TIGR02917       662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN  738 (899)
T ss_pred             HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence            5432 233445555555555555555554            2334445555555555555555555555552  244444


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHh
Q 003710          533 FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRK  610 (801)
Q Consensus       533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~  610 (801)
                      +..+..++.+.|++++|.+.++.+.+.  ...+...+..+...|.+.|++++|.+.++++..  +++..++..+...+..
T Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       739 AIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            445555555555555555555555432  112244555555555555555555555555432  2234445555555555


Q ss_pred             cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      .|+ ..|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+
T Consensus       817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            555 445555555555555555555555555555555555555555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=100.00  E-value=4.1e-37  Score=261.89  Aligned_cols=106  Identities=45%  Similarity=0.742  Sum_probs=97.0

Q ss_pred             cccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchhhh--------ccccccchHHHHH
Q 003710          668 GCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNR--------AKSPHHHSVRLAI  739 (801)
Q Consensus       668 ~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~  739 (801)
                      ||||+++    |.|++||.+||+.        ++..++...||.|++..+.|+++++++        +..+++||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            7999877    9999999999988        455677888999999999998877655        6688999999999


Q ss_pred             HHhccCCCCCCcEEEEecc-ccCCchhhhhhhhccccceEEEEeCCCcccccc
Q 003710          740 SFGLISTSVGNPVLVRNNT-RICEDCHSAVKKISEITKRELIVRDPKCFHHFR  791 (801)
Q Consensus       740 ~~~~~~~~~~~~i~i~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~  791 (801)
                      ||||+++      ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999999      999999 999999999999999999999999999999997

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.6e-30  Score=315.88  Aligned_cols=576  Identities=13%  Similarity=0.035  Sum_probs=457.7

Q ss_pred             HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCC-------------------
Q 003710           73 RALQELVSSGSMESACYLFEKMS---YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGF-------------------  130 (801)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------------------  130 (801)
                      .+...+...|+++.|...|++..   ..+...|..++..+...|++++|...++.+.+...                   
T Consensus       198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (899)
T TIGR02917       198 LKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY  277 (899)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCH
Confidence            55555666666666666666543   22444555555666666666666665555544321                   


Q ss_pred             -------------CCCc-ccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC
Q 003710          131 -------------KADY-FTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP  196 (801)
Q Consensus       131 -------------~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~  196 (801)
                                   .|+. ..+..+...+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+.
T Consensus       278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  356 (899)
T TIGR02917       278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPAL  356 (899)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                         1111 112222333445666677777776666654 2345566777788888888888888887765


Q ss_pred             C---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHH
Q 003710          197 V---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQ  273 (801)
Q Consensus       197 ~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~  273 (801)
                      .   .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|+.++|.+.+..+.+.... +....
T Consensus       357 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~  434 (899)
T TIGR02917       357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRAD  434 (899)
T ss_pred             hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhH
Confidence            2   355678888888999999999999998887643 124455666667778888999999999888876532 34456


Q ss_pred             HHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhcc
Q 003710          274 TSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKL  350 (801)
Q Consensus       274 ~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~  350 (801)
                      ..++..|.+.|+.++|.++++.+..   .+..+|+.+...|...|++++|...|.++.+.  .+.+...+..+...+...
T Consensus       435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~  512 (899)
T TIGR02917       435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQE  512 (899)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHC
Confidence            6678889999999999999998843   46778999999999999999999999999864  233445677788888999


Q ss_pred             CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710          351 GALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQ  427 (801)
Q Consensus       351 g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~  427 (801)
                      |++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++..   .+...+..++..|...|++++|+.+++
T Consensus       513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  591 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN  591 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999998865 45778899999999999999999999998843   356778889999999999999999999


Q ss_pred             HHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc------------hH
Q 003710          428 DLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DV  495 (801)
Q Consensus       428 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~  495 (801)
                      ++... .+.+..++..+..++...|++++|...++.+.+.. +.+...+..+...|.+.|+.++|.            +.
T Consensus       592 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       592 EAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            99864 34567788999999999999999999999998765 456778889999999999999997            56


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL  575 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~  575 (801)
                      .+|..++..+...|++++|+++++.+.+.+ .++...+..+...+...|++++|.+.|+.+..   ..|+...+..++.+
T Consensus       670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~  745 (899)
T TIGR02917       670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRA  745 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHH
Confidence            789999999999999999999999999865 45667788888899999999999999999875   35777888899999


Q ss_pred             HHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHH
Q 003710          576 LGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQ  653 (801)
Q Consensus       576 ~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~  653 (801)
                      +.+.|++++|.+.++++..  ..+...+..+...+...|+.+.|...++++++..|+++.++..++.+|...|+ ++|..
T Consensus       746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~  824 (899)
T TIGR02917       746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE  824 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence            9999999999999988754  34567788888889999999999999999999999999999999999999999 88999


Q ss_pred             HHHHHHHC
Q 003710          654 IKAIMEKE  661 (801)
Q Consensus       654 ~~~~m~~~  661 (801)
                      +++++.+.
T Consensus       825 ~~~~~~~~  832 (899)
T TIGR02917       825 YAEKALKL  832 (899)
T ss_pred             HHHHHHhh
Confidence            99988775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=2.8e-22  Score=244.40  Aligned_cols=583  Identities=12%  Similarity=0.052  Sum_probs=423.0

Q ss_pred             ccCCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--CCh-hhH----------------HHHHHHHHcCCChhHHHHH
Q 003710           62 KSIGPRNITKT-RALQELVSSGSMESACYLFEKMSY--LDT-YIW----------------NVVIRGFVDNGLFQEAVEF  121 (801)
Q Consensus        62 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~~-~~~----------------~~li~~~~~~~~~~~A~~~  121 (801)
                      ..+.|.++-+. .+...+.+.|+.++|.+.+++..+  |+. ..+                -.+.+.+...|++++|++.
T Consensus        55 ~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~  134 (1157)
T PRK11447         55 ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS  134 (1157)
T ss_pred             HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence            34567776666 788888899999999999988753  322 111                2234467888999999999


Q ss_pred             HHHHHHCCCCCCccc-HHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCc
Q 003710          122 HHRMVCEGFKADYFT-YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDT  200 (801)
Q Consensus       122 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~  200 (801)
                      |+++.+.. +|+... ...........++.++|...++.+++.. +.+...+..+...+...|+.++|.+.|+++.....
T Consensus       135 ~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~  212 (1157)
T PRK11447        135 YDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA  212 (1157)
T ss_pred             HHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Confidence            99988643 333321 1111122234588999999999998875 33566788888899999999999999988753211


Q ss_pred             ------ccH-----------------HHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 003710          201 ------VSW-----------------NSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEI  257 (801)
Q Consensus       201 ------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l  257 (801)
                            ..|                 ...+..+-.....+.|...+.++......|+... ...-..+...|++++|...
T Consensus       213 ~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~  291 (1157)
T PRK11447        213 GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPE  291 (1157)
T ss_pred             chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHH
Confidence                  111                 1111112222223445555555443322333221 1223455678999999999


Q ss_pred             HHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--CCc---ccHHHH------------HHHHHhCCChhHH
Q 003710          258 HCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--RNI---VAWNAM------------VGGYVVNAHFLES  320 (801)
Q Consensus       258 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A  320 (801)
                      +++.++.. +.+..++..|...|.+.|+.++|...|++..+  |+.   ..|..+            ...+.+.|++++|
T Consensus       292 l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        292 LQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            99999874 33678888999999999999999999998744  322   223322            3356789999999


Q ss_pred             HHHHHHHHhCCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC
Q 003710          321 FSCLRKMLEDDNLNP-DCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI  399 (801)
Q Consensus       321 ~~l~~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~  399 (801)
                      ...|++....   .| +...+..+-..+...|+.++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+.
T Consensus       371 ~~~~~~Al~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        371 ERLYQQARQV---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLS  445 (1157)
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCC
Confidence            9999999865   34 44566677888899999999999999999864 334566677777775 467899999998775


Q ss_pred             CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710          400 EKN------------LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITK  466 (801)
Q Consensus       400 ~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~  466 (801)
                      ...            ...+..+...+...|++++|++.|++.++.  .|+ ...+..+...+.+.|+.++|...++.+++
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~  523 (1157)
T PRK11447        446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ  523 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            432            123445667788899999999999999874  565 44566777889999999999999999987


Q ss_pred             hCCCCchHHHHHHHHHHHhcCCccccchHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710          467 LGLVSNIYISNSIVYMYAKCGDLQTARDVV----------------------SWNVIIMAYAIHGLGKISIQLFSEMREK  524 (801)
Q Consensus       467 ~g~~~~~~~~~~li~~y~~~g~~~~A~d~~----------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~  524 (801)
                      .. +.+...+.++...+.+.|+.++|....                      .+..+...+...|+.++|+++++.    
T Consensus       524 ~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----  598 (1157)
T PRK11447        524 QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----  598 (1157)
T ss_pred             cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence            54 334445555555667788877775211                      122456678899999999999872    


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchH
Q 003710          525 GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIW  601 (801)
Q Consensus       525 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~  601 (801)
                       .+++...+..+...+.+.|++++|+..|+...+   ..|+ ...+..++.+|...|++++|++.++.... .|+ ...+
T Consensus       599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~  674 (1157)
T PRK11447        599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ  674 (1157)
T ss_pred             -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence             234555677788889999999999999999885   3566 88899999999999999999999998764 343 4567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHH-CCCc
Q 003710          602 GALLTASRKNNDIVSAEFAARHVLSSAQDNT------GCYVLLSNMYAEAGRWEDVEQIKAIMEK-EGLK  664 (801)
Q Consensus       602 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~g~~  664 (801)
                      ..+..++...|+.++|...++++++..|+++      ..+..++.++...|++++|...++.... .|+.
T Consensus       675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence            7778888899999999999999998876544      3566779999999999999999887753 3453

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.94  E-value=6e-22  Score=241.53  Aligned_cols=577  Identities=11%  Similarity=0.042  Sum_probs=424.2

Q ss_pred             HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccH------------
Q 003710           73 RALQELVSSGSMESACYLFEKMS---YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTY------------  137 (801)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~------------  137 (801)
                      ..++.....++.+.|.+.++++.   ..|+..+..++..+.+.|+.++|.+.++++.+..  |+...+            
T Consensus        33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~  110 (1157)
T PRK11447         33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP  110 (1157)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence            55667778899999999999864   3467788899999999999999999999998754  544333            


Q ss_pred             -----HHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH-HHHHHhcCCchHHHHhhccCCC--C-CcccHHHHHH
Q 003710          138 -----PFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL-IVMYMKLGCVECAERMFDEMPV--R-DTVSWNSMIG  208 (801)
Q Consensus       138 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~  208 (801)
                           ....+.+...|+.++|.+.++.+.+.. +++....... .......|+.++|++.|+++..  | +...+..+..
T Consensus       111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~  189 (1157)
T PRK11447        111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL  189 (1157)
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                 222345778899999999999998764 3332211111 2222345999999999999873  3 5567888999


Q ss_pred             HHHcCCChhhHHHHHHHHHhCCCC----------------CChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003710          209 GYCSVGDGVSSLVFFKEMQNCGLR----------------YDRF---SLISALGAISIEGCLKIGKEIHCQVIKSGLEMD  269 (801)
Q Consensus       209 ~~~~~g~~~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~  269 (801)
                      .+...|+.++|+..|+++......                ++..   .+...+..+-.....+.+...+....+....|+
T Consensus       190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~  269 (1157)
T PRK11447        190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA  269 (1157)
T ss_pred             HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence            999999999999999998653210                0000   111111112222234445555555444433333


Q ss_pred             hHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhH------
Q 003710          270 VMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITI------  340 (801)
Q Consensus       270 ~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~------  340 (801)
                      .. ...+...+...|++++|...|++...   .+...+..+...|.+.|++++|+..|++..+...-.++...+      
T Consensus       270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV  348 (1157)
T ss_pred             hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence            22 22345667889999999999998743   367788999999999999999999999988651111111111      


Q ss_pred             ------HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHH
Q 003710          341 ------INLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIA  411 (801)
Q Consensus       341 ------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~  411 (801)
                            ...-..+.+.|++++|...++.+++.. +.+...+..|...|.+.|++++|++.|++..+   .+...+..+..
T Consensus       349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                  122345678899999999999999874 34567778899999999999999999998753   34556777777


Q ss_pred             HHHHcCCHHHHHHHHHHHhCCCCCC--------CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003710          412 AYVRNGQNREAMELFQDLWSEPLKP--------DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY  483 (801)
Q Consensus       412 ~~~~~g~~~~A~~l~~~m~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  483 (801)
                      .|. .++.++|+.+++.+.......        ....+..+...+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus       428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~  505 (1157)
T PRK11447        428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            774 467899999988764321100        01123445566778999999999999999865 44567788899999


Q ss_pred             HhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhc
Q 003710          484 AKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES---------TFVSLLSSCSI  542 (801)
Q Consensus       484 ~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~  542 (801)
                      .+.|++++|.            +...+..+...+...|+.++|+..++++......++..         .+..+...+..
T Consensus       506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999997            44455556666778899999999998865433222221         23345667888


Q ss_pred             cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHH
Q 003710          543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFA  620 (801)
Q Consensus       543 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~  620 (801)
                      .|+.++|..+++.      ..++...+..+.+.|.+.|++++|++.+++... .| +...+..+...+...|+.++|+..
T Consensus       586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999872      123466778899999999999999999998764 34 567889999999999999999999


Q ss_pred             HHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          621 ARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       621 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ++++++..|++...+..++.+|...|++++|.++++.+....
T Consensus       660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            999999999999999999999999999999999999987754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=1.8e-18  Score=201.41  Aligned_cols=206  Identities=8%  Similarity=-0.067  Sum_probs=153.2

Q ss_pred             HcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHH
Q 003710           79 VSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEK  155 (801)
Q Consensus        79 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  155 (801)
                      ...|++++|...|+...+   .+..++..+.+.|.+.|++++|+..+++..+.  .|+...|..++..+   ++..+|..
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~  129 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT  129 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence            345999999999998753   34667899999999999999999999999875  46555555555333   88889999


Q ss_pred             HHHHHHHhCCCCchhhHhHHHHH--------HHhcCCchHHHHhhccCCCCC--ccc-HHHHHHHHHcCCChhhHHHHHH
Q 003710          156 VHGSLFKSGLNSDVYVCNSLIVM--------YMKLGCVECAERMFDEMPVRD--TVS-WNSMIGGYCSVGDGVSSLVFFK  224 (801)
Q Consensus       156 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~d--~~~-~~~li~~~~~~g~~~~A~~l~~  224 (801)
                      +++.+++.. +.+..++..+...        |.+.+...++++  .+...++  ... .-.+...|.+.|++++|++++.
T Consensus       130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            999999886 3345555555555        888877777777  3333343  333 3444899999999999999999


Q ss_pred             HHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC
Q 003710          225 EMQNCGLRYDRFSLISALGAISI-EGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP  298 (801)
Q Consensus       225 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~  298 (801)
                      ++.+.+... ..-...+-.++.. .++ +.+..++..    .+..|..+...+.+.|.+.|+.++|.++++++..
T Consensus       207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~  275 (987)
T PRK09782        207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP  275 (987)
T ss_pred             HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence            999986433 3324444456665 355 667666443    3446888999999999999999999999998843

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.87  E-value=4.2e-17  Score=190.06  Aligned_cols=576  Identities=12%  Similarity=0.058  Sum_probs=354.5

Q ss_pred             cCCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003710           63 SIGPRNITKT-RALQELVSSGSMESACYLFEKMSY--LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPF  139 (801)
Q Consensus        63 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  139 (801)
                      ...|.+..+. .|...|.+.|++++|+..+++...  |+-.-|..++..+   +++.+|..+|+++.... +-+..++..
T Consensus        72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~  147 (987)
T PRK09782         72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTL  147 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHH
Confidence            4456666666 888999999999999999988754  3223333333332   77888888888887643 112222322


Q ss_pred             HHHHH-----hcCCChhHHHHHHHHHHHhCCCCchhhHhHH-HHHHHhcCCchHHHHhhccCCCCC---cccHHHHHHHH
Q 003710          140 VIKAC-----AGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL-IVMYMKLGCVECAERMFDEMPVRD---TVSWNSMIGGY  210 (801)
Q Consensus       140 ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~  210 (801)
                      +....     .+-...+++.+.++ .......|+..+...+ ...|.+.|++++|.+++.++.+.+   ..-+..|-..|
T Consensus       148 la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay  226 (987)
T PRK09782        148 RCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVL  226 (987)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            22220     01112233333333 2222222233333333 555555555555555555544221   11133333344


Q ss_pred             Hc-CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----------------------
Q 003710          211 CS-VGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGL-----------------------  266 (801)
Q Consensus       211 ~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~-----------------------  266 (801)
                      .+ .++ +++..+++.    .++-|......+...+.+.|+.++|.+++..+...-.                       
T Consensus       227 ~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~  301 (987)
T PRK09782        227 LAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL  301 (987)
T ss_pred             HHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence            44 233 444444332    1223444444555555555555555544444322110                       


Q ss_pred             -------CCc-hHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-Ch
Q 003710          267 -------EMD-VMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP-DC  337 (801)
Q Consensus       267 -------~~~-~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~  337 (801)
                             .++ ....-.+++.+.+.++++.+.++.+ ....+. ..-.-..+....+...++...++.|.+.   .| +.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~---~~~~~  376 (987)
T PRK09782        302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQ---EPANL  376 (987)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhc---CCCCH
Confidence                   011 1122334677778888887777643 222222 1111112222346667777777777654   22 22


Q ss_pred             hhHHHHHHHHhccCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHccCC---hHHHHHH------------------
Q 003710          338 ITIINLLPSCTKLGALLEGKSIHGYAIRK-G-FLPNVALETALIDMYAGSGA---LKMTEKL------------------  394 (801)
Q Consensus       338 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~---~~~A~~~------------------  394 (801)
                      ...-.+---..+.|+.++|.+++...... + -..+....+-|+..|.+.+.   ..++..+                  
T Consensus       377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  456 (987)
T PRK09782        377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG  456 (987)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence            22223333345678888888888877662 1 12345566678888887766   3333222                  


Q ss_pred             -------HhcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHH
Q 003710          395 -------FGSMI---EK--NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHS  462 (801)
Q Consensus       395 -------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~  462 (801)
                             +....   ..  +...|..+..++.. ++.++|+..|.+....  .|+......+..++...|++++|...++
T Consensus       457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r  533 (987)
T PRK09782        457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ  533 (987)
T ss_pred             hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                   11111   12  45566777766666 7888888877777653  4665544444455567889999998888


Q ss_pred             HHHHhCCCCchHHHHHHHHHHHhcCCccccchH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003710          463 LITKLGLVSNIYISNSIVYMYAKCGDLQTARDV------------VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE  530 (801)
Q Consensus       463 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  530 (801)
                      .+...  +|+...+..+...+.+.|+.++|...            ..+..+.......|++++|+..|++..+  +.|+.
T Consensus       534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~  609 (987)
T PRK09782        534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSA  609 (987)
T ss_pred             HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCH
Confidence            87554  34444455667778888888887611            1122222333445999999999999988  56888


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHH
Q 003710          531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTA  607 (801)
Q Consensus       531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~  607 (801)
                      ..+..+...+.+.|++++|...|+....   +.|+ ...+..+..++...|++++|++.+++... .| +...+..+..+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a  686 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV  686 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8888999999999999999999999874   5676 78888999999999999999999988754 34 46788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +...|+.+.|+..++++++++|++..+....+++.....+++.|.+-+++.-.-++
T Consensus       687 l~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        687 NQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999887776655444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=6.9e-18  Score=173.75  Aligned_cols=371  Identities=16%  Similarity=0.170  Sum_probs=270.1

Q ss_pred             hHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH-
Q 003710          270 VMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP-  345 (801)
Q Consensus       270 ~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-  345 (801)
                      ..+|+.+.+.+-..|++++|.++++.+.+   ..+..|..+..++...|+.+.|.+.|.+..   .+.|+.+-..+-+. 
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lgn  192 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchhH
Confidence            45666667777777777777777776643   345667777777777777777777777666   34565554333222 


Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003710          346 SCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREA  422 (801)
Q Consensus       346 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A  422 (801)
                      ..-..|++++|..-+...++..- .=..+|+.|...+-..|++..|..-|++...-|+   ..|-.|-..|...+.+++|
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence            22235667777776666665431 1244566666666677777777777777654332   4566666677777777777


Q ss_pred             HHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--------
Q 003710          423 MELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--------  493 (801)
Q Consensus       423 ~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~--------  493 (801)
                      +..|.+...  ..|+ .+.+..+-..|...|.++.|...++..++.. +.-...|+.|..++...|++.+|.        
T Consensus       272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            777776654  3454 3445555555666777777777777776543 223456777777777777777776        


Q ss_pred             ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 003710          494 ----DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IE  567 (801)
Q Consensus       494 ----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~  567 (801)
                          ...+.+.|...|...|+.++|..+|....+  +.|.-. .++.|...+-+.|++++|+..+++..   .|.|+ ..
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd  423 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD  423 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence                344678888999999999999999999988  777754 68899999999999999999999887   68999 89


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHc
Q 003710          568 HYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA  645 (801)
Q Consensus       568 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~  645 (801)
                      .|+.|...|-..|+.+.|.+.+.+... .|. ....+.|.+.+...|+..+|.+.++.++++.|+-+.+|-.|....---
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v  503 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV  503 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence            999999999999999999999988653 454 467788999999999999999999999999999999998888777666


Q ss_pred             CCchHHH
Q 003710          646 GRWEDVE  652 (801)
Q Consensus       646 g~~~~a~  652 (801)
                      .+|.+-.
T Consensus       504 cdw~D~d  510 (966)
T KOG4626|consen  504 CDWTDYD  510 (966)
T ss_pred             hcccchH
Confidence            7776633

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=1.4e-17  Score=171.58  Aligned_cols=370  Identities=15%  Similarity=0.189  Sum_probs=302.2

Q ss_pred             HHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh-hhHHHHHHHHhccCCh
Q 003710          278 DMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC-ITIINLLPSCTKLGAL  353 (801)
Q Consensus       278 ~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~  353 (801)
                      ..+....+.+....--.....   .-..+|..+...+-..|+.++|+.+|+.|.+.   .|+. ..|..+-.++...|+.
T Consensus        90 ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~  166 (966)
T KOG4626|consen   90 AIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDL  166 (966)
T ss_pred             hhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCC
Confidence            344555555543332222222   23467888999999999999999999999864   6654 4788899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchh-HHHHHHHHHHccCChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003710          354 LEGKSIHGYAIRKGFLPNVA-LETALIDMYAGSGALKMTEKLFGSMIEKN---LVSWNAMIAAYVRNGQNREAMELFQDL  429 (801)
Q Consensus       354 ~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m  429 (801)
                      +.|.+.+.+.++..  |+.. +.+-+-...-..|++++|...+.+..+.+   .+.|+.|...+-..|+..+|+..|++.
T Consensus       167 ~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA  244 (966)
T KOG4626|consen  167 ELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA  244 (966)
T ss_pred             cccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence            99999999888753  4433 33344555566899999998887765433   478999999999999999999999999


Q ss_pred             hCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch------------HH
Q 003710          430 WSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD------------VV  496 (801)
Q Consensus       430 ~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d------------~~  496 (801)
                      ..  +.|+ ...|..|-..+...+.++.|...+..+.... +....++..+.-.|-..|.++.|.|            ..
T Consensus       245 vk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~  321 (966)
T KOG4626|consen  245 VK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD  321 (966)
T ss_pred             hc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence            76  5676 3467778888888888888888887776543 3346677778888889999999872            35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                      .||.|..++-..|+..+|.+.|.+.+.  +.|+. ...+.|...+...|++++|..+|....   .+.|. ....+.|..
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~  396 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLAS  396 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHH
Confidence            799999999999999999999999988  56764 478899999999999999999999876   56788 788999999


Q ss_pred             HHHhcCCHHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710          575 LLGRIGNLDQAKRFIEEMP-SAPT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE  652 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~  652 (801)
                      .|-.+|++++|+.-+++.. .+|+ ...++.+.+.+...|+++.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|.
T Consensus       397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence            9999999999999998865 3676 5678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 003710          653 QIKAIMEK  660 (801)
Q Consensus       653 ~~~~~m~~  660 (801)
                      .-++...+
T Consensus       477 ~sY~~aLk  484 (966)
T KOG4626|consen  477 QSYRTALK  484 (966)
T ss_pred             HHHHHHHc
Confidence            99888765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.80  E-value=5.2e-17  Score=176.74  Aligned_cols=165  Identities=14%  Similarity=0.122  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIID  574 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~  574 (801)
                      |..++..+...|+.++|++.|+++.+.  .|+ ...+..+...+.+.|++++|.++|+.+.+.   .|+  ...+..++.
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~  257 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLME  257 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHH
Confidence            445566677778888888888888874  344 446777778888899999999999988753   344  456788889


Q ss_pred             HHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH---cCCchH
Q 003710          575 LLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE---AGRWED  650 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~  650 (801)
                      +|.+.|++++|.+.++++.. .|+...+..+...+...|+.+.|...++++++..|++.. +..+...+..   .|+.++
T Consensus       258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~  336 (389)
T PRK11788        258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKE  336 (389)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchh
Confidence            99999999999999888754 577777788888899999999999999999999988764 4444545443   569999


Q ss_pred             HHHHHHHHHHCCCccCCc
Q 003710          651 VEQIKAIMEKEGLKKTTG  668 (801)
Q Consensus       651 a~~~~~~m~~~g~~~~~~  668 (801)
                      +..+++.|.+++++++|.
T Consensus       337 a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        337 SLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999887

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.3e-14  Score=143.80  Aligned_cols=406  Identities=14%  Similarity=0.144  Sum_probs=260.9

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc--CCChh-HHHHHHHHHHHhCCCCchhhHhHH
Q 003710           99 TYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAG--LLYLS-EGEKVHGSLFKSGLNSDVYVCNSL  175 (801)
Q Consensus        99 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l  175 (801)
                      +.+=|.|+.. ...|...++.-+|+.|.+.|+..+...-..+++..+-  ..++. .-.+-|-.|.+.|- .+..+    
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~s----  189 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSS----  189 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccc----
Confidence            3455666654 4578899999999999999987777666666554332  22222 22334445555552 23333    


Q ss_pred             HHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710          176 IVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK  255 (801)
Q Consensus       176 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~  255 (801)
                          .|.|.+.+   ++-+...++..+|..||.|+|+--..+.|.+++++-.....+.+..+|+.+|.+-+-    ..++
T Consensus       190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K  258 (625)
T KOG4422|consen  190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK  258 (625)
T ss_pred             ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence                35666555   444555677889999999999999999999999999999899999999999987653    3448


Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003710          256 EIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP  335 (801)
Q Consensus       256 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p  335 (801)
                      .+..+|+...+.||..|+|+++...++.|+++.|++.+                           ++++.+|.+- |+.|
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKei-GVeP  310 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEI-GVEP  310 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHh-CCCc
Confidence            99999999999999999999999999999998877653                           3334444444 4444


Q ss_pred             ChhhHHHHHHHHhccCChHH-HHHHHHHHHH----hCCCC----chhHHHHHHHHHHccCChHHHHHHHhcCCC------
Q 003710          336 DCITIINLLPSCTKLGALLE-GKSIHGYAIR----KGFLP----NVALETALIDMYAGSGALKMTEKLFGSMIE------  400 (801)
Q Consensus       336 d~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------  400 (801)
                      ...+|..+|..+++.++..+ +..+...+..    ..+.|    |...+...++.+.+..+.+-|.++-.-...      
T Consensus       311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~  390 (625)
T KOG4422|consen  311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF  390 (625)
T ss_pred             chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence            44444444444444433322 2222222211    11111    223333334444444444444443322211      


Q ss_pred             --C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHH
Q 003710          401 --K---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYI  475 (801)
Q Consensus       401 --~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~  475 (801)
                        +   ..+-|..+....|+....+.-+..|+.|.-.-+-|+..+...+++|....+.++-..+++..++..|..-+...
T Consensus       391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l  470 (625)
T KOG4422|consen  391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL  470 (625)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence              1   12345667778888889999999999999888899999999999999999999999999999998875433222


Q ss_pred             HHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHH-
Q 003710          476 SNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES---TFVSLLSSCSISGMVDEGWN-  551 (801)
Q Consensus       476 ~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~-  551 (801)
                      .                                      .+++..|......|+..   -+..+..-|+.  ++.++.+ 
T Consensus       471 ~--------------------------------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~  510 (625)
T KOG4422|consen  471 R--------------------------------------EEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYES  510 (625)
T ss_pred             H--------------------------------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHh
Confidence            1                                      34555555544444423   33333332221  2222221 


Q ss_pred             HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710          552 YFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM  592 (801)
Q Consensus       552 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m  592 (801)
                      .-.+|.   ...-.....++..-++.|.|+.++|.+++.-.
T Consensus       511 ~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~  548 (625)
T KOG4422|consen  511 QPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLF  548 (625)
T ss_pred             hHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence            222232   22333556778888888888888888887665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.78  E-value=1.2e-16  Score=173.83  Aligned_cols=299  Identities=15%  Similarity=0.133  Sum_probs=188.4

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc---hhhHhHHHHHHHhc
Q 003710          106 IRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSD---VYVCNSLIVMYMKL  182 (801)
Q Consensus       106 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~  182 (801)
                      ...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++   ..++..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            334556788888888888888753 23444677777777788888888888877776532221   23456666677777


Q ss_pred             CCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 003710          183 GCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHC  259 (801)
Q Consensus       183 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~  259 (801)
                      |++++|.++|+++..   .+..+++.++..+.+.|++++|++.|+.+.+.+..++...                      
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------  178 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------  178 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence            777777777776653   3455666677777777777777777776655432211100                      


Q ss_pred             HHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 003710          260 QVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD  336 (801)
Q Consensus       260 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd  336 (801)
                               ....+..+...|.+.|++++|.+.|+++.+   .+...+..+...|.+.|++++|.++|+++... +....
T Consensus       179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~  248 (389)
T PRK11788        179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYL  248 (389)
T ss_pred             ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhH
Confidence                     011233455556666666666666666532   23345566666777777777777777777643 11111


Q ss_pred             hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHH
Q 003710          337 CITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYV  414 (801)
Q Consensus       337 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~  414 (801)
                      ..++..+..++...|+.++|.+.+..+.+..  |+..++..++..|.+.|++++|..+|+++.  .|+..+++.++..+.
T Consensus       249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            2345566666666777777777666666543  444555677777777788888887777663  356667777777666


Q ss_pred             H---cCCHHHHHHHHHHHhCCCCCCCHh
Q 003710          415 R---NGQNREAMELFQDLWSEPLKPDAM  439 (801)
Q Consensus       415 ~---~g~~~~A~~l~~~m~~~g~~pd~~  439 (801)
                      .   .|+.++++.+|++|.+.+++|+..
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            4   457778888888887777666655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.78  E-value=1.8e-15  Score=173.59  Aligned_cols=414  Identities=11%  Similarity=0.031  Sum_probs=270.1

Q ss_pred             HHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 003710          203 WNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGK  282 (801)
Q Consensus       203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~  282 (801)
                      +...-..|.+.|++++|+..|++...  +.|+...|..+-.++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            33455566777777777777777654  45666666666677777777777777777777653 2245566667777788


Q ss_pred             CCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCChhhHHHHHHHHhccCChHHHHH
Q 003710          283 CGVVDYAERLFNMIFPRN---IVAWNAMVGGYVVNAHFLESFSCLRKMLED-DNLNPDCITIINLLPSCTKLGALLEGKS  358 (801)
Q Consensus       283 ~g~~~~A~~lf~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~~~~~~g~~~~a~~  358 (801)
                      .|++++|..-|......+   ......++..+..    ..+........+. ....|........+..+    .......
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~  278 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA  278 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence            888888877665442211   1111111111111    1222222222221 01112111111111111    1111111


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHH------HccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003710          359 IHGYAIRKGFLPNVALETALIDMY------AGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRNGQNREAMELF  426 (801)
Q Consensus       359 ~~~~~~~~g~~~~~~~~~~Li~~y------~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~  426 (801)
                      -+....    ..+......++..+      ...+++++|.+.|+...+.      +...|+.+...+...|++++|+..|
T Consensus       279 ~~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       279 GLEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             hhhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            111100    11111111111111      2346888999999877532      3456888888888999999999999


Q ss_pred             HHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003710          427 QDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAY  505 (801)
Q Consensus       427 ~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~  505 (801)
                      ++....  .|+ ...|..+...+...|++++|...++.+++..  |+                     +...|..+...|
T Consensus       355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~---------------------~~~~~~~lg~~~  409 (615)
T TIGR00990       355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SE---------------------DPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHH
Confidence            998764  565 4467777778888999999999999887753  22                     234566666777


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710          506 AIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD  583 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~  583 (801)
                      ...|++++|++.|++.++  +.|+ ...+..+...+.+.|++++|+..|+...+.   .|+ ...|..+..+|...|+++
T Consensus       410 ~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHH
Confidence            778888888999999988  4565 456777888899999999999999998753   465 788999999999999999


Q ss_pred             HHHHHHHhCCC-CCCc-chH-------HHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710          584 QAKRFIEEMPS-APTA-RIW-------GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       584 eA~~~~~~m~~-~p~~-~~~-------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      +|.+.+++... .|+. ..+       +..+..+...|++++|+..++++++++|++...+..++.+|...|++++|.+.
T Consensus       485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~  564 (615)
T TIGR00990       485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL  564 (615)
T ss_pred             HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            99999988543 3321 111       11122234469999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC
Q 003710          655 KAIMEKE  661 (801)
Q Consensus       655 ~~~m~~~  661 (801)
                      +++..+.
T Consensus       565 ~e~A~~l  571 (615)
T TIGR00990       565 FERAAEL  571 (615)
T ss_pred             HHHHHHH
Confidence            9988663

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=6.3e-15  Score=172.16  Aligned_cols=385  Identities=10%  Similarity=0.041  Sum_probs=236.2

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHHH
Q 003710          247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSC  323 (801)
Q Consensus       247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l  323 (801)
                      ..|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++.   .+.+...+..+...+...|++++|+..
T Consensus        27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3344444444444443311 223334445555555555555555555553   122333444555555555555555555


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH
Q 003710          324 LRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL  403 (801)
Q Consensus       324 ~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~  403 (801)
                      +++..+.   .|+...+..+..++...|+.++|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.... ++
T Consensus       106 l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p  180 (765)
T PRK10049        106 AKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP  180 (765)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence            5555543   2222224444445555566666666665555543 22344445566666677777777777766654 21


Q ss_pred             H--------HHHHHHHHH-----HHcCCH---HHHHHHHHHHhCC-CCCCCHh-hHH----HHHHHHHhhcChhhHHHHH
Q 003710          404 V--------SWNAMIAAY-----VRNGQN---REAMELFQDLWSE-PLKPDAM-TFA----SILPAYAEIATLSDSMQIH  461 (801)
Q Consensus       404 ~--------~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~----~ll~a~~~~~~~~~a~~i~  461 (801)
                      .        ....++..+     ...+++   ++|++.++.+... ...|+.. .+.    ..+.++...|+.++|...+
T Consensus       181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~  260 (765)
T PRK10049        181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY  260 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            1        111112211     122233   6788888888753 2233321 111    1134455678889999998


Q ss_pred             HHHHHhCCC-CchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 003710          462 SLITKLGLV-SNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-----ESTFVS  535 (801)
Q Consensus       462 ~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~  535 (801)
                      +.+.+.+-+ |+-.                     ..|  +...|...|++++|+..|+++.+..  |.     ......
T Consensus       261 ~~ll~~~~~~P~~a---------------------~~~--la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~  315 (765)
T PRK10049        261 QRLKAEGQIIPPWA---------------------QRW--VASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELAD  315 (765)
T ss_pred             HHhhccCCCCCHHH---------------------HHH--HHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHH
Confidence            888876522 2210                     111  2345666777777789998877632  32     234556


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcch
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYG----------IVPG---IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARI  600 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~  600 (801)
                      +..++...|++++|.++++.+.+...          -.|+   ...+..+..++...|++++|++.++++..  +.+...
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l  395 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL  395 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            66678889999999999998875311          1123   23556788889999999999999998754  234677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      |..+...+...|+.+.|+..++++++++|++...+..++..+...|+|++|..+++.+.+..
T Consensus       396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            88888889999999999999999999999999999999999999999999999999987743

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3e-13  Score=147.64  Aligned_cols=565  Identities=13%  Similarity=0.069  Sum_probs=378.6

Q ss_pred             hHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHhcCCChhHHHHHHH
Q 003710           84 MESACYLFEKMSY--L-DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE--GFKADYFTYPFVIKACAGLLYLSEGEKVHG  158 (801)
Q Consensus        84 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  158 (801)
                      ++.|.+.|..+..  | |+...-.-.......+++..|+.+|......  ...||+..  .+-..+.+.++.+.|+..|.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence            5777777766542  2 3322222223334578899999999886543  34555543  22244568888888888888


Q ss_pred             HHHHhCCCCchhhHhHHHHHHH------hcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC
Q 003710          159 SLFKSGLNSDVYVCNSLIVMYM------KLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC  229 (801)
Q Consensus       159 ~~~~~g~~~~~~~~~~li~~y~------~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  229 (801)
                      .+.+..  |  ...++++....      ....+..+..++...-   ..|++..|.|-+-|.-.|+++.++.+...+...
T Consensus       224 ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~  299 (1018)
T KOG2002|consen  224 RALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN  299 (1018)
T ss_pred             HHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            888653  2  33333333321      1123444555544432   458888999999999999999999999888764


Q ss_pred             CCC--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--C-CcccH
Q 003710          230 GLR--YDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--R-NIVAW  304 (801)
Q Consensus       230 g~~--p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~-~~~~~  304 (801)
                      ...  .-...|..+-+++-..|+++.|...|.+..+..-..-+.-+--|..+|.+.|+++.+...|+.+..  | +..+.
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence            311  123457778888889999999999998887764222233344677999999999999999998844  3 44455


Q ss_pred             HHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHH----HHhCCCCchhHHH
Q 003710          305 NAMVGGYVVNA----HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYA----IRKGFLPNVALET  376 (801)
Q Consensus       305 ~~li~~~~~~g----~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~  376 (801)
                      ..+-..|...+    ..++|..++.+..+.  ...|...|..+-..+-. ++.......+..+    ...+-.+...+.|
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            55555666554    456677777666653  23344455555444443 3433335555443    4566678889999


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCC-------CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-H
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEK-------NL-------VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT-F  441 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~-------~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~  441 (801)
                      .+...+...|.++.|...|+.....       |.       .-|| +...+-..++.+.|.+.|+.....  .|.-++ |
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y  533 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAY  533 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence            9999999999999999999876321       22       1233 344555667889999999998764  455443 2


Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--------------hHHHHHHHHHHHHH
Q 003710          442 ASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--------------DVVSWNVIIMAYAI  507 (801)
Q Consensus       442 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~--------------d~~~~~~li~~~~~  507 (801)
                      ..++...-..+...+|...+..+.... ..++.+.+-+.+.|.+...+..|.              |..+.-+|.+.|.+
T Consensus       534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~  612 (1018)
T KOG2002|consen  534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ  612 (1018)
T ss_pred             HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence            233212223456777777777777543 344555555666777766666665              33444444443332


Q ss_pred             ------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710          508 ------------HGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL  575 (801)
Q Consensus       508 ------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~  575 (801)
                                  .+..++|+++|.+.++.. +-|...=+.+.-.++..|++.+|..+|.+..+..  .-...+|-.+..+
T Consensus       613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~  689 (1018)
T KOG2002|consen  613 ALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHC  689 (1018)
T ss_pred             HhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHH
Confidence                        345788999999988743 3355666777778899999999999999998752  2335678889999


Q ss_pred             HHhcCCHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHH---------
Q 003710          576 LGRIGNLDQAKRFIEEMPS----APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY---------  642 (801)
Q Consensus       576 ~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---------  642 (801)
                      |..+|++-.|+++|+....    +.+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++-+.         
T Consensus       690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr  769 (1018)
T KOG2002|consen  690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR  769 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence            9999999999999987543    356778888999999999999999999999999999877554443333         


Q ss_pred             ----------HHcCCchHHHHHHHHHHHCCCc
Q 003710          643 ----------AEAGRWEDVEQIKAIMEKEGLK  664 (801)
Q Consensus       643 ----------~~~g~~~~a~~~~~~m~~~g~~  664 (801)
                                ...+..++|.++|..|...+-+
T Consensus       770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                      3334577888899888876543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=1.2e-14  Score=166.17  Aligned_cols=345  Identities=9%  Similarity=-0.007  Sum_probs=239.4

Q ss_pred             HHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh-hhHHHHHHHHhcc
Q 003710          275 SLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC-ITIINLLPSCTKL  350 (801)
Q Consensus       275 ~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~  350 (801)
                      .++....+.|+.++|..+++....   .+...+..++.+....|++++|+..|+++...   .|+. ..+..+...+...
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence            345566677888888888877632   34445555666677788888888888888753   4443 3556666677788


Q ss_pred             CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710          351 GALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--EK-NLVSWNAMIAAYVRNGQNREAMELFQ  427 (801)
Q Consensus       351 g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~  427 (801)
                      |+.+.|...+..+++.. +.+...+..+...|...|+.++|...++.+.  .+ +...+..+ ..+.+.|++++|+..++
T Consensus       124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            88888888888887753 3356677778888888888888888877652  22 33333333 34677888888888888


Q ss_pred             HHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Q 003710          428 DLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI  507 (801)
Q Consensus       428 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~  507 (801)
                      .+......++...+..+..++...|+.++|.+.+..+.+.. +.+...+..+..+|...|+.++|.              
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~--------------  266 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK--------------  266 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH--------------
Confidence            87665333344444455567777888888888888877654 333444444444444444444330              


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003710          508 HGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQA  585 (801)
Q Consensus       508 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA  585 (801)
                          .+|+..|++..+  +.|+. ..+..+...+...|++++|...++...+   +.|+ ...+..+..+|.+.|++++|
T Consensus       267 ----~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        267 ----LQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             ----HHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence                247899999887  45654 4677888889999999999999998875   3566 66777888999999999999


Q ss_pred             HHHHHhCCC-CCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          586 KRFIEEMPS-APTARIWGA-LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       586 ~~~~~~m~~-~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      .+.++++.. .|+...+.. +..++...|+.++|...++++++..|++.            ...|++|...+....+
T Consensus       338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~  402 (656)
T PRK15174        338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS  402 (656)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence            999988764 466544443 45678889999999999999999998864            2344556555555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.72  E-value=3.3e-14  Score=162.55  Aligned_cols=306  Identities=10%  Similarity=0.004  Sum_probs=209.3

Q ss_pred             HhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhccCChHH
Q 003710          280 YGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTKLGALLE  355 (801)
Q Consensus       280 y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~~~  355 (801)
                      ....|+.++|...|+++..   .+...|..+...+.+.|++++|+..|++...   +.|+ ...+..+...+...|+.++
T Consensus        86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~e  162 (656)
T PRK15174         86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQ  162 (656)
T ss_pred             HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHH
Confidence            3345555555555555422   2334455555566666666666666666653   2343 3345556666667777777


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710          356 GKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK----NLVSWNAMIAAYVRNGQNREAMELFQDLWS  431 (801)
Q Consensus       356 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  431 (801)
                      |...+..+....-. +...+..+ ..+.+.|++++|...++.+.+.    +...+..+...+.+.|++++|+..|++...
T Consensus       163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~  240 (656)
T PRK15174        163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA  240 (656)
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            77777666554322 23333333 3478899999999999987443    333445567788999999999999999987


Q ss_pred             CCCCCCHhhHHHHHHHHHhhcChhh----HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Q 003710          432 EPLKPDAMTFASILPAYAEIATLSD----SMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI  507 (801)
Q Consensus       432 ~g~~pd~~t~~~ll~a~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~  507 (801)
                      .. +-+...+..+-..+...|++++    |...++.+.+..  |+                     +...|..+...+..
T Consensus       241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~---------------------~~~a~~~lg~~l~~  296 (656)
T PRK15174        241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SD---------------------NVRIVTLYADALIR  296 (656)
T ss_pred             cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CC---------------------CHHHHHHHHHHHHH
Confidence            53 2245566677788889999885    788888888753  33                     23456666777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHH
Q 003710          508 HGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI-EHYGCIIDLLGRIGNLDQA  585 (801)
Q Consensus       508 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA  585 (801)
                      .|++++|+..+++..+  ..|+. ..+..+..++...|++++|...|+.+.+.   .|+. ..+..+..++...|+.++|
T Consensus       297 ~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        297 TGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHH
Confidence            8888888999999998  45664 45667788899999999999999998753   5663 3445567889999999999


Q ss_pred             HHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710          586 KRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD  630 (801)
Q Consensus       586 ~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  630 (801)
                      .+.+++... .|+..           ..++++|...+.++++.-+.
T Consensus       372 ~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~  406 (656)
T PRK15174        372 ESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNL  406 (656)
T ss_pred             HHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence            999998653 35432           34556777777777765433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.72  E-value=7.6e-13  Score=144.60  Aligned_cols=528  Identities=13%  Similarity=0.092  Sum_probs=375.9

Q ss_pred             ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh--cCCChhHHHHHHHHHHHhC--CCCchhhHhHHHHHHHhcCCchHHH
Q 003710          114 LFQEAVEFHHRMVCEGFKADYFTYPFVIKACA--GLLYLSEGEKVHGSLFKSG--LNSDVYVCNSLIVMYMKLGCVECAE  189 (801)
Q Consensus       114 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~  189 (801)
                      +.+.|...|....+.. ++|.  ...+.++|.  ..+++..|..+|..++...  ..+|+.+.  +-..++++|+.+.|+
T Consensus       145 ~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~  219 (1018)
T KOG2002|consen  145 SMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL  219 (1018)
T ss_pred             cHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence            3689999999988753 3333  345566665  5678999999999977653  35565543  336678999999999


Q ss_pred             HhhccCCCCCcccHHHHHHHHH---c---CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710          190 RMFDEMPVRDTVSWNSMIGGYC---S---VGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIK  263 (801)
Q Consensus       190 ~~f~~m~~~d~~~~~~li~~~~---~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~  263 (801)
                      ..|.+..+-|+..-++++....   .   ...+..++.++...-... .-|+...+.|-+-+...|+++.+..+...++.
T Consensus       220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~  298 (1018)
T KOG2002|consen  220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK  298 (1018)
T ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence            9999988666655555553221   1   223455566655543321 23566777788888899999999999999987


Q ss_pred             hCCCCc--hHHHHHHHHHHhcCCChHHHHHHHhhcCC--CC--cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh
Q 003710          264 SGLEMD--VMVQTSLVDMYGKCGVVDYAERLFNMIFP--RN--IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC  337 (801)
Q Consensus       264 ~g~~~~--~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~  337 (801)
                      .-....  ...|--+..+|-..|++++|...|-+...  +|  +..+--+...|...|+.+++...|....+.   .||.
T Consensus       299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---~p~~  375 (1018)
T KOG2002|consen  299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---LPNN  375 (1018)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---Ccch
Confidence            753221  22356678999999999999999987744  22  445666788999999999999999999864   4554


Q ss_pred             -hhHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCh------HHHHHHHhc-CCCCCHHH
Q 003710          338 -ITIINLLPSCTKLG----ALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGAL------KMTEKLFGS-MIEKNLVS  405 (801)
Q Consensus       338 -~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~------~~A~~~f~~-~~~~~~~~  405 (801)
                       .|...+-..|+..+    ..+.|..+.....+.- +.|...|-.+..+|-...-+      ..|..++.. +....+..
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~  454 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEV  454 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence             46666656666554    4566666666655543 44666676676666654432      333333322 23356778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhCC---CCCCCH-----hhHHHHHH-HHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710          406 WNAMIAAYVRNGQNREAMELFQDLWSE---PLKPDA-----MTFASILP-AYAEIATLSDSMQIHSLITKLGLVSNIYIS  476 (801)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~  476 (801)
                      .|.+...+...|++++|...|.+....   ...+|.     +|...-+. ..-..++.+.|.+.|..+.+..  |     
T Consensus       455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p-----  527 (1018)
T KOG2002|consen  455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--P-----  527 (1018)
T ss_pred             HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--c-----
Confidence            899999999999999999999998765   233343     22222333 3445678999999999999754  2     


Q ss_pred             HHHHHHHHhcC-------Cccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 003710          477 NSIVYMYAKCG-------DLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNESTFVSL  536 (801)
Q Consensus       477 ~~li~~y~~~g-------~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l  536 (801)
                       +.|++|.+.|       .+.+|.            +...|+-+...|.....+..|.+-|+.....- ..+|.....+|
T Consensus       528 -~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL  606 (1018)
T KOG2002|consen  528 -GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL  606 (1018)
T ss_pred             -hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence             3556666665       333333            66788888889999999988888777665432 23687887788


Q ss_pred             HHHHhc------------cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchH
Q 003710          537 LSSCSI------------SGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIW  601 (801)
Q Consensus       537 l~a~~~------------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~  601 (801)
                      .+.|.+            .+..++|+++|....+   ..| |...-+-+.-.++..|++.+|.++|.+...  ..+..+|
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~  683 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW  683 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence            775543            3456778888887764   334 467777888899999999999999998865  2466889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccC--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          602 GALLTASRKNNDIVSAEFAARHVLSSA--QDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       602 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ..|...|...|++..|.++|+..++..  .+++.+...|+.++.+.|+|.+|.+.........
T Consensus       684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA  746 (1018)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999998753  3567888899999999999999999887766543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.72  E-value=3e-13  Score=154.88  Aligned_cols=178  Identities=9%  Similarity=0.006  Sum_probs=120.7

Q ss_pred             HHHHhcCCchHHHHhhccCCCCCcc---cHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHH---HHHHhccCC
Q 003710          177 VMYMKLGCVECAERMFDEMPVRDTV---SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISA---LGAISIEGC  250 (801)
Q Consensus       177 ~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~  250 (801)
                      -...+.|+++.|+..|++..+.+..   ....++..+...|+.++|+..+++..    .|+...+..+   ...+...|+
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence            3456889999999999887743333   23378888888899999999988876    4433333332   345667788


Q ss_pred             hHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHH
Q 003710          251 LKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVV--NAHFLESFSCLRKML  328 (801)
Q Consensus       251 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~  328 (801)
                      ++.|.++++++++... .+..++..++..|...++.++|.+.++++...+......+..+|..  .++..+|++.++++.
T Consensus       118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            8888888888888753 2356666778888888888888888888865443332224344443  455556888888888


Q ss_pred             hCCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHH
Q 003710          329 EDDNLNPD-CITIINLLPSCTKLGALLEGKSIHGY  362 (801)
Q Consensus       329 ~~~g~~pd-~~t~~~ll~~~~~~g~~~~a~~~~~~  362 (801)
                      +.   .|+ ...+.....++.+.|-...|.++...
T Consensus       197 ~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        197 RL---APTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             Hh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            64   454 34456666777777777776655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.70  E-value=4.2e-13  Score=154.11  Aligned_cols=273  Identities=11%  Similarity=0.009  Sum_probs=197.2

Q ss_pred             cCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHccCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHH
Q 003710          350 LGALLEGKSIHGYAIRKG-F-LPNVALETALIDMYAGSGALKMTEKLFGSMIE--K-NLVSWNAMIAAYVRNGQNREAME  424 (801)
Q Consensus       350 ~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~  424 (801)
                      .+.+++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+  | +...|..+...+...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            356777777777777654 2 22455677778888888999999998887743  2 35577888888889999999999


Q ss_pred             HHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003710          425 LFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIM  503 (801)
Q Consensus       425 l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~  503 (801)
                      .|++..+.  .| +...+..+...+...|++++|...++..++..  |+                     +...|..+..
T Consensus       387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~---------------------~~~~~~~la~  441 (615)
T TIGR00990       387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PD---------------------FIFSHIQLGV  441 (615)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--cc---------------------CHHHHHHHHH
Confidence            99988764  34 45667777778888999999999999888753  32                     1234555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--------HHHHHHHH
Q 003710          504 AYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI--------EHYGCIID  574 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~li~  574 (801)
                      .+.+.|++++|+..|++.++.  .|+ ...+..+...+...|++++|++.|+...+   +.|+.        ..++....
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~  516 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALA  516 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHH
Confidence            777788888889999998873  454 56788888889999999999999998764   33431        11222233


Q ss_pred             HHHhcCCHHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710          575 LLGRIGNLDQAKRFIEEMP-SAPT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE  652 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~  652 (801)
                      .+...|++++|.+++++.. ..|+ ...+..+...+...|++++|...+++++++.+.....+        ....|.+|.
T Consensus       517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~  588 (615)
T TIGR00990       517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEAT  588 (615)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHH
Confidence            4455799999999998853 2444 35688888999999999999999999998877643322        223455666


Q ss_pred             HHHHHHHH
Q 003710          653 QIKAIMEK  660 (801)
Q Consensus       653 ~~~~~m~~  660 (801)
                      ++....++
T Consensus       589 ~~~~~~~~  596 (615)
T TIGR00990       589 RTQIQVQE  596 (615)
T ss_pred             HHHHHHHH
Confidence            66555554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.69  E-value=1.2e-13  Score=161.42  Aligned_cols=408  Identities=9%  Similarity=0.025  Sum_probs=256.7

Q ss_pred             chhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHH
Q 003710          168 DVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD-RFSLISALG  243 (801)
Q Consensus       168 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~  243 (801)
                      +.....-.+......|+.++|++++.+...   .+...+..+...+.+.|++++|+.+|++..+.  .|+ ......+..
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            333444555666677777888777777553   23334777777777778888888877776653  333 334445555


Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHH
Q 003710          244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLES  320 (801)
Q Consensus       244 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A  320 (801)
                      .+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++..   .+...+..+...+...|..++|
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence            6667777777777777776663 22344 66666677777777777777776633   2344455566666666777777


Q ss_pred             HHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH-----HccCCh---HHHH
Q 003710          321 FSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMY-----AGSGAL---KMTE  392 (801)
Q Consensus       321 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y-----~k~g~~---~~A~  392 (801)
                      +..++....    .|+....   +             +             ......++..+     ...+++   ++|.
T Consensus       170 l~~l~~~~~----~p~~~~~---l-------------~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al  216 (765)
T PRK10049        170 LGAIDDANL----TPAEKRD---L-------------E-------------ADAAAELVRLSFMPTRSEKERYAIADRAL  216 (765)
T ss_pred             HHHHHhCCC----CHHHHHH---H-------------H-------------HHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence            766655432    2321000   0             0             00001111111     111222   4555


Q ss_pred             HHHhcCCC-----CCH-HH----HHHHHHHHHHcCCHHHHHHHHHHHhCCCCC-CCHhhHHHHHHHHHhhcChhhHHHHH
Q 003710          393 KLFGSMIE-----KNL-VS----WNAMIAAYVRNGQNREAMELFQDLWSEPLK-PDAMTFASILPAYAEIATLSDSMQIH  461 (801)
Q Consensus       393 ~~f~~~~~-----~~~-~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~  461 (801)
                      ..++.+.+     ++. ..    ....+..+...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|...+
T Consensus       217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l  295 (765)
T PRK10049        217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSIL  295 (765)
T ss_pred             HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHH
Confidence            55555431     111 11    111133455678889999999998876532 3322 222456788888999999988


Q ss_pred             HHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH
Q 003710          462 SLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-----------IKPNE  530 (801)
Q Consensus       462 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~  530 (801)
                      +.+.+..  |...               ..  ....+..+..++...|++++|+++++++.+..           -.||.
T Consensus       296 ~~~l~~~--p~~~---------------~~--~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~  356 (765)
T PRK10049        296 TELFYHP--ETIA---------------DL--SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND  356 (765)
T ss_pred             HHHhhcC--CCCC---------------CC--ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence            8877532  2110               00  01123344456677788888899999888742           12342


Q ss_pred             ---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHH
Q 003710          531 ---STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGAL  604 (801)
Q Consensus       531 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~l  604 (801)
                         ..+..+...+...|++++|+++++.+...   .|+ ...+..+..++...|++++|++.+++... .|+ ...+..+
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence               23455667888899999999999998753   455 88899999999999999999999998765 465 4566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710          605 LTASRKNNDIVSAEFAARHVLSSAQDNTGCY  635 (801)
Q Consensus       605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  635 (801)
                      .......|+++.|+..++++++..|+++.+.
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            7778889999999999999999999998654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.68  E-value=1.1e-12  Score=150.25  Aligned_cols=445  Identities=9%  Similarity=-0.028  Sum_probs=301.3

Q ss_pred             HhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHH-H--HHHHHcCCChhhHH
Q 003710          144 CAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNS-M--IGGYCSVGDGVSSL  220 (801)
Q Consensus       144 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~-l--i~~~~~~g~~~~A~  220 (801)
                      ..+.|++..|...+..+.+........++ .++..+...|+.++|+..+++...|+...+.. +  ...|...|++++|+
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            45889999999999999987532222345 88899999999999999999988775554444 3  34777889999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--
Q 003710          221 VFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--  298 (801)
Q Consensus       221 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--  298 (801)
                      ++|+++.+.... +...+..++..+...++.++|.+.+..+.+.  .|+...+-.++..+...++..+|.+.++++.+  
T Consensus       123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            999999875422 3455667778888999999999999999876  45555565555566556677679999999844  


Q ss_pred             C-CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003710          299 R-NIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETA  377 (801)
Q Consensus       299 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~  377 (801)
                      | +...+..++....+.|-...|+++..+-       |+-++-......         -.....+.++.+..++..--  
T Consensus       200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~-------p~~f~~~~~~~l---------~~~~~a~~vr~a~~~~~~~~--  261 (822)
T PRK14574        200 PTSEEVLKNHLEILQRNRIVEPALRLAKEN-------PNLVSAEHYRQL---------ERDAAAEQVRMAVLPTRSET--  261 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC-------ccccCHHHHHHH---------HHHHHHHHHhhcccccccch--
Confidence            3 5667788889999999999999776543       433332211110         00111122222221111000  


Q ss_pred             HHHHHHccCChHHHHHHHhcC----CC-CC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHH
Q 003710          378 LIDMYAGSGALKMTEKLFGSM----IE-KN-LVS----WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPA  447 (801)
Q Consensus       378 Li~~y~k~g~~~~A~~~f~~~----~~-~~-~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a  447 (801)
                        .   +.--.+.|..-++.+    .. |. ...    .--.+.++...|++.++++.|+.|...|.+....+-..+..+
T Consensus       262 --~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada  336 (822)
T PRK14574        262 --E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA  336 (822)
T ss_pred             --h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence              0   000112222222222    11 11 111    123456778889999999999999988876555677888899


Q ss_pred             HHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--
Q 003710          448 YAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG--  525 (801)
Q Consensus       448 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--  525 (801)
                      |...+..++|..++..+....-+...                 .-.+......|.-+|...+++++|..+++++.+..  
T Consensus       337 yl~~~~P~kA~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~  399 (822)
T PRK14574        337 YIDRRLPEKAAPILSSLYYSDGKTFR-----------------NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY  399 (822)
T ss_pred             HHhcCCcHHHHHHHHHHhhccccccC-----------------CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            99999999999999988754311000                 00011223445566667777777799999988731  


Q ss_pred             -----------CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710          526 -----------IKPNEST-FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEM  592 (801)
Q Consensus       526 -----------~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m  592 (801)
                                 ..||-.. +..+...+.-.|++.+|++.++.+..   ..|. ......+.+++...|...+|.+.++..
T Consensus       400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a  476 (822)
T PRK14574        400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAV  476 (822)
T ss_pred             EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                       1123233 34455667888999999999999874   3454 888899999999999999999999776


Q ss_pred             CC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710          593 PS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY  635 (801)
Q Consensus       593 ~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  635 (801)
                      .. .|+ ..+...+..+....|+++.|+.+.+.+++..|++..+-
T Consensus       477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            54 454 44555667777888999999999999999999987543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=5.2e-13  Score=132.57  Aligned_cols=344  Identities=15%  Similarity=0.148  Sum_probs=227.5

Q ss_pred             ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710           98 DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV  177 (801)
Q Consensus        98 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  177 (801)
                      ...+|.+||.|+++-...+.|.+++.+......+.+..+||.+|.+-.    +..++++..+|+.....||.+++|+++.
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~  281 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS  281 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence            445788999999999999999999999888878888899999988754    3445888999999999999999999999


Q ss_pred             HHHhcCCchHHHHhh----ccCC----CCCcccHHHHHHHHHcCCChhh-HHHHHHHHHh----CCCCC----ChhhHHH
Q 003710          178 MYMKLGCVECAERMF----DEMP----VRDTVSWNSMIGGYCSVGDGVS-SLVFFKEMQN----CGLRY----DRFSLIS  240 (801)
Q Consensus       178 ~y~~~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~~  240 (801)
                      ..++.|+++.|++.+    .+|+    +|...+|..+|..+++.++..+ |..++.+.+.    +.++|    |...|.+
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            999999888876654    3343    6777788888887777777644 3444444432    22332    3455677


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHH
Q 003710          241 ALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLES  320 (801)
Q Consensus       241 ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A  320 (801)
                      .+..|.+..+.+.|.++++.+.... .            |...|..      ++     ...-|..+....++....+.-
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~~-----~~fYyr~~~~licq~es~~~~  417 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------QH-----RNFYYRKFFDLICQMESIDVT  417 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------HH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776654211 0            0000100      00     112244455566666667777


Q ss_pred             HHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-Ch---H-------
Q 003710          321 FSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSG-AL---K-------  389 (801)
Q Consensus       321 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~---~-------  389 (801)
                      +..|..|.-. -+-|+..+...++++....+.++...+++..++..|...+....--++..+++.. ..   +       
T Consensus       418 ~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~  496 (625)
T KOG4422|consen  418 LKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA  496 (625)
T ss_pred             HHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence            7777777766 6777777888888877777888888788777777775555544444444444433 11   0       


Q ss_pred             ---HHHHHHh-------cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-C---CCCHhhHHHHHHHHHhhcC
Q 003710          390 ---MTEKLFG-------SMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP-L---KPDAMTFASILPAYAEIAT  453 (801)
Q Consensus       390 ---~A~~~f~-------~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~---~pd~~t~~~ll~a~~~~~~  453 (801)
                         -|..+++       +|.  +-.....+.+...+.+.|..++|.++|.-..+.+ -   .|......-++.+.....+
T Consensus       497 ~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s  576 (625)
T KOG4422|consen  497 FAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS  576 (625)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence               0111111       111  1134556677777888999999999998885544 2   2333334455666667778


Q ss_pred             hhhHHHHHHHHHHhCCC
Q 003710          454 LSDSMQIHSLITKLGLV  470 (801)
Q Consensus       454 ~~~a~~i~~~~~~~g~~  470 (801)
                      ..+|...++.+...+++
T Consensus       577 psqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  577 PSQAIEVLQLASAFNLP  593 (625)
T ss_pred             HHHHHHHHHHHHHcCch
Confidence            88888888888766544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.54  E-value=5.9e-10  Score=121.65  Aligned_cols=551  Identities=12%  Similarity=0.078  Sum_probs=280.2

Q ss_pred             HHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHH
Q 003710           78 LVSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGE  154 (801)
Q Consensus        78 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  154 (801)
                      +...|++++|.+++.++.+   .+...|..|...|-+.|+.++++..+-..-... +-|...|..+-.-....|.+.+|.
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence            3334999999999988753   456689999999999999998887765544322 334556777777777888888888


Q ss_pred             HHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCc-cc-------HHHHHHHHHcCCChhhHHHHHHHH
Q 003710          155 KVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDT-VS-------WNSMIGGYCSVGDGVSSLVFFKEM  226 (801)
Q Consensus       155 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~-~~-------~~~li~~~~~~g~~~~A~~l~~~m  226 (801)
                      -.+..+++.. +++....-.-..+|-+.|+...|..-|.++-..+. +.       --.++..|...++-+.|++.++..
T Consensus       228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8888888876 34444444456777888888888777766543222 11       112345555666667777766665


Q ss_pred             HhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc-CCCCcccH
Q 003710          227 QNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI-FPRNIVAW  304 (801)
Q Consensus       227 ~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m-~~~~~~~~  304 (801)
                      ...+ -..+..+++.++..+.+....+.+......+.....++|..-+.+-          +.-..-+... ..++..+|
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~  376 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSY  376 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCc
Confidence            5421 1223334444444445555555555444444331111111000000          0000000000 00011111


Q ss_pred             HH----HHHHHHhC--CChhHHHHHHHHHHhCCC--CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710          305 NA----MVGGYVVN--AHFLESFSCLRKMLEDDN--LNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET  376 (801)
Q Consensus       305 ~~----li~~~~~~--g~~~~A~~l~~~m~~~~g--~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  376 (801)
                      +.    +.-++...  +...+++.-|  .... .  +.-+...|.-+..++.+.|.+.+|..++..+......-+..+|-
T Consensus       377 ~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  377 DLRVIRLMICLVHLKERELLEALLHF--LVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             cchhHhHhhhhhcccccchHHHHHHH--HHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence            11    01111111  1122222221  1111 2  11122234444444444455555555544444443333344444


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--------CCCCCHhhHHHHH
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSE--------PLKPDAMTFASIL  445 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~~t~~~ll  445 (801)
                      .+..+|...|..+.|...|+.....   +...--+|-..|.+.|+.++|++.+..|...        +..|+........
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~  533 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC  533 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence            4555555555555555544444222   1112222333444445555555555443211        1222222222223


Q ss_pred             HHHHhhcChhhHHHHHHHHHHh----------------------CCCCchHHHHHHHHHHHhcCCccccc----------
Q 003710          446 PAYAEIATLSDSMQIHSLITKL----------------------GLVSNIYISNSIVYMYAKCGDLQTAR----------  493 (801)
Q Consensus       446 ~a~~~~~~~~~a~~i~~~~~~~----------------------g~~~~~~~~~~li~~y~~~g~~~~A~----------  493 (801)
                      ..+.+.|+.++-..+-..|+..                      +..........++.+-.+.++-...+          
T Consensus       534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~  613 (895)
T KOG2076|consen  534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR  613 (895)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence            3333444443332222222210                      00111112222233333332211111          


Q ss_pred             -------hHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHH--HH-HHHHHHHhccCCHHHHHHHHHHhH
Q 003710          494 -------DVVSW----NVIIMAYAIHGLGKISIQLFSEMREKGIK--PNES--TF-VSLLSSCSISGMVDEGWNYFDSMR  557 (801)
Q Consensus       494 -------d~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~  557 (801)
                             .+.-|    .-+|..+++.|++++|+.+...+.+..+.  ++..  ++ ...+.++...+++..|..+++.|.
T Consensus       614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i  693 (895)
T KOG2076|consen  614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI  693 (895)
T ss_pred             hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                   12223    45677899999999999999988875432  2221  22 234567778999999999999998


Q ss_pred             HhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHHccCCCC
Q 003710          558 KDYGIVPG---IEHYGCIIDLLGRIGNLDQAKRFIEEM-PSAPTARIWGALLTA--SRKNNDIVSAEFAARHVLSSAQDN  631 (801)
Q Consensus       558 ~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~  631 (801)
                      ..++..-+   ...|++..+.+.+.|+-.-=.+++... ...|+......++.+  ....+.+.-|...+-++....|++
T Consensus       694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~  773 (895)
T KOG2076|consen  694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS  773 (895)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence            76554433   566777777777776655555554443 333333222222322  345567778999999999999999


Q ss_pred             chhHHHHHHHHH
Q 003710          632 TGCYVLLSNMYA  643 (801)
Q Consensus       632 ~~~~~~l~~~y~  643 (801)
                      |.+-.+|+-++-
T Consensus       774 Pl~nl~lglafi  785 (895)
T KOG2076|consen  774 PLINLCLGLAFI  785 (895)
T ss_pred             cHHHHHHHHHHH
Confidence            988777776664

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=1.2e-11  Score=123.52  Aligned_cols=475  Identities=13%  Similarity=0.115  Sum_probs=267.8

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhcCCChhHHHHHHHHHHHhCCCCc----hhhHhHHHHH
Q 003710          104 VVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACAGLLYLSEGEKVHGSLFKSGLNSD----VYVCNSLIVM  178 (801)
Q Consensus       104 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~  178 (801)
                      .|.+-|..+....+|+..|+-+.+...-||.-.+. .+-..+.+.+.+..|.+.+...+..-...+    ..+.+.+--.
T Consensus       206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt  285 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT  285 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence            34455556667778888888777766666654432 223445566677778777777665532222    1233444445


Q ss_pred             HHhcCCchHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 003710          179 YMKLGCVECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKE  256 (801)
Q Consensus       179 y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~  256 (801)
                      +.+.|++++|..-|+...  .||..+---||-++..-|+.++..+.|.+|..--..||..-|.                 
T Consensus       286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-----------------  348 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-----------------  348 (840)
T ss_pred             EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-----------------
Confidence            677788888888877654  4565543334445555677777777787777654444443221                 


Q ss_pred             HHHHHHHhCCCCchHHHHHHH-----HHHhcCC--ChHHHH----HHHhhcCCCCccc-HHHHHHHHHhCCChhHHHHHH
Q 003710          257 IHCQVIKSGLEMDVMVQTSLV-----DMYGKCG--VVDYAE----RLFNMIFPRNIVA-WNAMVGGYVVNAHFLESFSCL  324 (801)
Q Consensus       257 l~~~~~~~g~~~~~~~~~~li-----~~y~~~g--~~~~A~----~lf~~m~~~~~~~-~~~li~~~~~~g~~~~A~~l~  324 (801)
                            +..-.|+....|--|     .-.-+..  +.+++.    ++..-+..||-.. +.--+...-..-..+-|.++ 
T Consensus       349 ------~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-  421 (840)
T KOG2003|consen  349 ------KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-  421 (840)
T ss_pred             ------CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-
Confidence                  001122222222111     1111110  111111    1111111222110 00000000000001111100 


Q ss_pred             HHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc--CChHHHHHHHhcCCCCC
Q 003710          325 RKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGS--GALKMTEKLFGSMIEKN  402 (801)
Q Consensus       325 ~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~~  402 (801)
                       +|              .-...+.+.|+++.|.+++..+.+..-..-...-|.|...+.-.  .++.+|...-+....-|
T Consensus       422 -ei--------------~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d  486 (840)
T KOG2003|consen  422 -EI--------------NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID  486 (840)
T ss_pred             -hh--------------hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence             00              00112345666666666666665554433333333333333332  24444444443332211


Q ss_pred             HHHHHHHH-----HHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHH
Q 003710          403 LVSWNAMI-----AAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISN  477 (801)
Q Consensus       403 ~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~  477 (801)
                        -||.-.     ..-..+|++++|.+.|++.+...-.-....|+.-| .+-..|++++|+..|-.+...- ..      
T Consensus       487 --ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~n------  556 (840)
T KOG2003|consen  487 --RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LN------  556 (840)
T ss_pred             --ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-Hh------
Confidence              122111     11123678888888888876543222222333222 2345667777766654433110 01      


Q ss_pred             HHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 003710          478 SIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSM  556 (801)
Q Consensus       478 ~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m  556 (801)
                                      ++...-.+.+.|-...+..+|++++-+...  +.| |+..+.-|...|-+.|+-..|.+++-.-
T Consensus       557 ----------------n~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yds  618 (840)
T KOG2003|consen  557 ----------------NAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS  618 (840)
T ss_pred             ----------------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence                            122233455566677788888999977655  555 5567778888999999999999887643


Q ss_pred             HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcchHHHHHHHH-HhcCCHHHHHHHHHHHHccCCCCch
Q 003710          557 RKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMP-SAPTARIWGALLTAS-RKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       557 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                         |..-| +.++...|..-|....-+++|+.+|++.. ..|+..-|..++..| ++.|++..|...++...+..|.|..
T Consensus       619 ---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld  695 (840)
T KOG2003|consen  619 ---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD  695 (840)
T ss_pred             ---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence               44455 48888889999999999999999999875 489999999999877 6789999999999999999999999


Q ss_pred             hHHHHHHHHHHcCCc
Q 003710          634 CYVLLSNMYAEAGRW  648 (801)
Q Consensus       634 ~~~~l~~~y~~~g~~  648 (801)
                      .+-.|+.++...|.-
T Consensus       696 clkflvri~~dlgl~  710 (840)
T KOG2003|consen  696 CLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHhccccch
Confidence            999999999888853

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.53  E-value=6e-09  Score=109.49  Aligned_cols=492  Identities=13%  Similarity=0.052  Sum_probs=340.6

Q ss_pred             HHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhh
Q 003710          142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVS  218 (801)
Q Consensus       142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~  218 (801)
                      ++.......+.|+-++....+.- +.+    .-|.-+|++...++.|.++++...   ..+...|-+-...=-.+|+.+.
T Consensus       384 KaAVelE~~~darilL~rAvecc-p~s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m  458 (913)
T KOG0495|consen  384 KAAVELEEPEDARILLERAVECC-PQS----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM  458 (913)
T ss_pred             HHHHhccChHHHHHHHHHHHHhc-cch----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence            44445566666777777777653 222    234556667777788888876654   4467778776666677888877


Q ss_pred             HHHHHHH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhcCCChHHHHHH
Q 003710          219 SLVFFKE----MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD--VMVQTSLVDMYGKCGVVDYAERL  292 (801)
Q Consensus       219 A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~l  292 (801)
                      ..+++.+    +...|+..+...|..=..+|-..|..-....+...++..|++..  ..+++.-.+.+.+.+.++-|+.+
T Consensus       459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV  538 (913)
T KOG0495|consen  459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV  538 (913)
T ss_pred             HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence            7777654    45678888888888888888888888888888888887777543  45677777788888888888888


Q ss_pred             HhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 003710          293 FNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL  369 (801)
Q Consensus       293 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~  369 (801)
                      |....+   .+...|...+..--..|..++-..+|++....  ++-....+.......-..|++..|+.++..+.+..-.
T Consensus       539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn  616 (913)
T KOG0495|consen  539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN  616 (913)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence            876533   45667777777777778888888888887764  2222333333344444567777777777777665422


Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh-hHHHHHH
Q 003710          370 PNVALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM-TFASILP  446 (801)
Q Consensus       370 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~  446 (801)
                       +..++-+-+..-.....++.|+.+|.+..  .+..-.|.--+..--..+..++|++++++.++  .-|+.. .|..+-+
T Consensus       617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQ  693 (913)
T ss_pred             -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhH
Confidence             56666677777777777777777776653  23444454444444445667777777766655  245533 3333444


Q ss_pred             HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710          447 AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI  526 (801)
Q Consensus       447 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  526 (801)
                      .+-+.++++.|+..|..-.+. ++..+                      ..|-.+...--+.|..-+|..+|++.+-.+ 
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~-cP~~i----------------------pLWllLakleEk~~~~~rAR~ildrarlkN-  749 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKK-CPNSI----------------------PLWLLLAKLEEKDGQLVRARSILDRARLKN-  749 (913)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-CCCCc----------------------hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence            555556666666555443332 12222                      344444444455566666688888887754 


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 003710          527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT  606 (801)
Q Consensus       527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~  606 (801)
                      +-|...|...+..-.+.|+.+.|..+.....++  ...+...|.--|.+..+.++-..+.+.+++.  +.|+.+..++..
T Consensus       750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~  825 (913)
T KOG0495|consen  750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAK  825 (913)
T ss_pred             CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHH
Confidence            345667899999999999999999998888764  4445778888888888888877777777765  456667777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEE
Q 003710          607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFE  673 (801)
Q Consensus       607 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~  673 (801)
                      .+.....++.|...++++++.+|++..++..+-..+...|.-++-.++++.....  .|.-|..|+-
T Consensus       826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a  890 (913)
T KOG0495|consen  826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA  890 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence            8888999999999999999999999999999999999999999988998887654  3445667753

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.51  E-value=2.1e-10  Score=124.26  Aligned_cols=530  Identities=11%  Similarity=0.024  Sum_probs=300.1

Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCC
Q 003710          120 EFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRD  199 (801)
Q Consensus       120 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d  199 (801)
                      .++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-..+.....+++.++......++.+.+.       +|-
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            35566777888888888888888888888888888 8888887777777788888888888888776655       667


Q ss_pred             cccHHHHHHHHHcCCChhhHHHHHHH-HH-------hCCCCCChhhHHHHHHHHhccC-------ChHHHHHHHHHHHHh
Q 003710          200 TVSWNSMIGGYCSVGDGVSSLVFFKE-MQ-------NCGLRYDRFSLISALGAISIEG-------CLKIGKEIHCQVIKS  264 (801)
Q Consensus       200 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-------~~~~a~~l~~~~~~~  264 (801)
                      ..+|+.|..+|.+.||... ++..++ |.       ..|+.--..-|...+++|-..-       ....-+.++++.++.
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888654 222222 21       1233222222222222221110       011122333444444


Q ss_pred             CC-CCchHHHHH---HHHHH-hcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh
Q 003710          265 GL-EMDVMVQTS---LVDMY-GKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI  338 (801)
Q Consensus       265 g~-~~~~~~~~~---li~~y-~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~  338 (801)
                      +. .|-..-++.   .++-. .-...+++-........+ ++..++.+.+..-..+|+.+.|..++.+|.+. |+..+.+
T Consensus       162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~H  240 (1088)
T KOG4318|consen  162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAH  240 (1088)
T ss_pred             HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccc
Confidence            31 111111111   11111 111223333333333333 78899999999999999999999999999999 9999999


Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 003710          339 TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQ  418 (801)
Q Consensus       339 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  418 (801)
                      -|..+|-+   .++......+..-|...|+.|+..|+.-.+-...++|....+....+.-.--....+..+..|...+.+
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~  317 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR  317 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence            88888876   788888889999999999999999988877777776554333322211111112223333333211111


Q ss_pred             HH-----HHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHh--CCC-CchHHHHHHHHHHHhcCCcc
Q 003710          419 NR-----EAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKL--GLV-SNIYISNSIVYMYAKCGDLQ  490 (801)
Q Consensus       419 ~~-----~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~-~~~~~~~~li~~y~~~g~~~  490 (801)
                      .+     -....+++..-.|+......|. +..-....|.-+...++-+.+...  ... .++..+.+++.-|.+.  .+
T Consensus       318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr--~e  394 (1088)
T KOG4318|consen  318 LRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR--IE  394 (1088)
T ss_pred             HHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH--HH
Confidence            11     1222223322233332222222 222222355566666665555421  111 1233344444444331  11


Q ss_pred             ccchHHHHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHHhccC
Q 003710          491 TARDVVSWNVIIMAYAI---HGLGKISIQLFSEM------------RE----KGIKP-------NESTFVSLLSSCSISG  544 (801)
Q Consensus       491 ~A~d~~~~~~li~~~~~---~g~~~~A~~l~~~m------------~~----~g~~p-------~~~t~~~ll~a~~~~g  544 (801)
                      .+.+...++ .-.+...   .....+..++....            ..    +-..|       =...-..++..|+..-
T Consensus       395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~  473 (1088)
T KOG4318|consen  395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY  473 (1088)
T ss_pred             hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            111111122 1111111   11111111111111            00    01111       0112334455555555


Q ss_pred             CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCcchHHHHHHHHHhcCCHHHHHH
Q 003710          545 MVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-----PTARIWGALLTASRKNNDIVSAEF  619 (801)
Q Consensus       545 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-----p~~~~~~~ll~~~~~~g~~~~a~~  619 (801)
                      +..+++..-+..... - -  ...|..||+.+....++++|..+.++....     -|...+..+.....+++....+..
T Consensus       474 n~lK~l~~~ekye~~-l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t  549 (1088)
T KOG4318|consen  474 NKLKILCDEEKYEDL-L-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST  549 (1088)
T ss_pred             HHHHHHHHHHHHHHH-H-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence            555555443333221 1 1  267999999999999999999999987632     345566777888888888888887


Q ss_pred             HHHHHHc---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710          620 AARHVLS---SAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSM  671 (801)
Q Consensus       620 ~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  671 (801)
                      +.+...+   ..|....+..-+.+.-+..|+.+...++++-+...|+.. +|--|
T Consensus       550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~  603 (1088)
T KOG4318|consen  550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW  603 (1088)
T ss_pred             HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence            7776654   334445666778888899999999999999999988865 45444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.50  E-value=1e-10  Score=126.56  Aligned_cols=209  Identities=14%  Similarity=0.121  Sum_probs=132.8

Q ss_pred             cccccCCCCChhHHHHHHHHHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 003710           59 TSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYL----DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADY  134 (801)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  134 (801)
                      +...++.|+.+++.+||..||..|+.+.|- +|.-|.-+    +...++.++.+..+.++.+.+.           .|..
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a   83 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA   83 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence            344678888888889999999999999998 77766532    3345677777766666665543           5666


Q ss_pred             ccHHHHHHHHhcCCChhH---HHHHHHHHH----HhCCC-----------------CchhhHhHHHHHHHhcCCchHHHH
Q 003710          135 FTYPFVIKACAGLLYLSE---GEKVHGSLF----KSGLN-----------------SDVYVCNSLIVMYMKLGCVECAER  190 (801)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-----------------~~~~~~~~li~~y~~~g~~~~A~~  190 (801)
                      .||..++.+|...||+..   ..+.+..+.    ..|+.                 ||.   ..++....-.|-++.+.+
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHH
Confidence            677777777777776543   222111111    11211                 111   112222222333444444


Q ss_pred             hhccCC----------------------------------CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChh
Q 003710          191 MFDEMP----------------------------------VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRF  236 (801)
Q Consensus       191 ~f~~m~----------------------------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  236 (801)
                      ++..+|                                  .++..+|.+++..-..+|+.+.|..++.+|++.|+..+..
T Consensus       161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H  240 (1088)
T KOG4318|consen  161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH  240 (1088)
T ss_pred             HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence            433332                                  2566777777777778888888888888888888877777


Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCC
Q 003710          237 SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGV  285 (801)
Q Consensus       237 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~  285 (801)
                      -|-.+|-+   .++...+..+..-|...|+.|+..|+..-+-...+.|.
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            77766655   66777777777778888888887777766655555444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.50  E-value=5.9e-09  Score=114.04  Aligned_cols=583  Identities=13%  Similarity=0.077  Sum_probs=354.4

Q ss_pred             CCChhHH-HHHHHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 003710           66 PRNITKT-RALQELVSSGSMESACYLFEKM---SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI  141 (801)
Q Consensus        66 ~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  141 (801)
                      |.....+ .|-..|-..|+.++++..+-..   ...|.--|..+-....+.|++.+|.-.|.+..+.. +++...+---.
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers  248 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS  248 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence            3333334 8889999999999998877553   34566789999999999999999999999998764 44444444455


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH----HHHHHhcCCchHHHHhhccCCC--C---CcccHHHHHHHHHc
Q 003710          142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL----IVMYMKLGCVECAERMFDEMPV--R---DTVSWNSMIGGYCS  212 (801)
Q Consensus       142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~  212 (801)
                      ..|-+.|+...|..-+.++.....+.|..-...+    +..|...++-+.|.+.++....  .   +...+|.++..|.+
T Consensus       249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~  328 (895)
T KOG2076|consen  249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK  328 (895)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            6778899999999999999887543333333333    4445566777888888877653  2   45678999999999


Q ss_pred             CCChhhHHHHHHHHHhCCCCCCh----------------------hhHH----HHHHHHhccCChHHHHHHHHHHHHhCC
Q 003710          213 VGDGVSSLVFFKEMQNCGLRYDR----------------------FSLI----SALGAISIEGCLKIGKEIHCQVIKSGL  266 (801)
Q Consensus       213 ~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~a~~~~~~~~~a~~l~~~~~~~g~  266 (801)
                      ...++.|......+......+|.                      ..|.    -+.-++......+....+...+.+...
T Consensus       329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~  408 (895)
T KOG2076|consen  329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV  408 (895)
T ss_pred             hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence            99999999998888762222222                      1111    222334556666677777777777764


Q ss_pred             --CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh-h
Q 003710          267 --EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP----RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI-T  339 (801)
Q Consensus       267 --~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t  339 (801)
                        .-++..|.-+.++|...|.+.+|.++|..+..    .+...|--+..+|...|.+++|.+.|......   .|+.. .
T Consensus       409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~  485 (895)
T KOG2076|consen  409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDA  485 (895)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhh
Confidence              44677888999999999999999999998844    46778999999999999999999999999854   56554 3


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----------
Q 003710          340 IINLLPSCTKLGALLEGKSIHGYAI--------RKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK----------  401 (801)
Q Consensus       340 ~~~ll~~~~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----------  401 (801)
                      -.+|-..+-+.|+.++|.+.+..+.        ..+..|+....--..+.|.+.|+.++-..+-..|..+          
T Consensus       486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~  565 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR  565 (895)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence            3445556678899999999988853        3345666666667778888888877644433333110          


Q ss_pred             ----------------CHHHHHHHHHHHHHcCCHHHHHH------HHHHHhCCCCCCCHh--hHHHHHHHHHhhcChhhH
Q 003710          402 ----------------NLVSWNAMIAAYVRNGQNREAME------LFQDLWSEPLKPDAM--TFASILPAYAEIATLSDS  457 (801)
Q Consensus       402 ----------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a  457 (801)
                                      +...--.++.+-.+.++......      .+.--...|+.-|..  -+.-++..+++.+.+++|
T Consensus       566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeA  645 (895)
T KOG2076|consen  566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEA  645 (895)
T ss_pred             HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                            00011111222211111110000      011111112222211  223344455556666666


Q ss_pred             HHHHHHHHHhCC--CCch---HHHHHHHHHHHhcCCccccc-----------------hHHHHHHHHHHHHHcCCHHHHH
Q 003710          458 MQIHSLITKLGL--VSNI---YISNSIVYMYAKCGDLQTAR-----------------DVVSWNVIIMAYAIHGLGKISI  515 (801)
Q Consensus       458 ~~i~~~~~~~g~--~~~~---~~~~~li~~y~~~g~~~~A~-----------------d~~~~~~li~~~~~~g~~~~A~  515 (801)
                      ..+...+.....  .++.   ..-...+.+....+++..|.                 -...||...+.+.+.|+-.--.
T Consensus       646 l~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~  725 (895)
T KOG2076|consen  646 LSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYL  725 (895)
T ss_pred             HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555543221  1111   11222233333334444443                 2334555555555554433333


Q ss_pred             HHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHH----------hcCCH
Q 003710          516 QLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYG-CIIDLLG----------RIGNL  582 (801)
Q Consensus       516 ~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~----------~~g~~  582 (801)
                      +++.....  ..|+.  ........-....+.+..|+..+-...   ...|+...++ ||.-++.          |.-..
T Consensus       726 R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i  800 (895)
T KOG2076|consen  726 RLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQI  800 (895)
T ss_pred             HHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33333222  12222  111111122334667777777665554   3456633333 3333332          11123


Q ss_pred             HHHHHHHHhCCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc------------hhHHHHHHHHHHcC
Q 003710          583 DQAKRFIEEMPS--AP--TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT------------GCYVLLSNMYAEAG  646 (801)
Q Consensus       583 ~eA~~~~~~m~~--~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~y~~~g  646 (801)
                      -++..++++...  .+  ...++-.+..++...|=+..|...++++++..|.+.            .+-..|.-+|-..|
T Consensus       801 ~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SG  880 (895)
T KOG2076|consen  801 AQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSG  880 (895)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCC
Confidence            345555544322  22  345566688899999999999999999998876431            12235667899999


Q ss_pred             CchHHHHHHHH
Q 003710          647 RWEDVEQIKAI  657 (801)
Q Consensus       647 ~~~~a~~~~~~  657 (801)
                      +..-|..+.+.
T Consensus       881 n~~lArqil~k  891 (895)
T KOG2076|consen  881 NMQLARQILEK  891 (895)
T ss_pred             cHHHHHHHHHh
Confidence            99988887753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=5.4e-13  Score=137.44  Aligned_cols=254  Identities=13%  Similarity=0.150  Sum_probs=113.3

Q ss_pred             HHHHHHHccCChHHHHHHHhcC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh
Q 003710          377 ALIDMYAGSGALKMTEKLFGSM-I----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI  451 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (801)
                      .+..++.+.|++++|.+++++. .    ..|...|..+.......+++++|++.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            4577788888999998888543 1    225556666666666778888888888888765432 34445555554 577


Q ss_pred             cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 003710          452 ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNE  530 (801)
Q Consensus       452 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~  530 (801)
                      ++.++|.++.....+..  +                      +...|..++..+...|+++++.+++++..... ..++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~----------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  146 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--G----------------------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA  146 (280)
T ss_dssp             ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred             ccccccccccccccccc--c----------------------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence            77888877766554322  1                      22345556666777788888899999977533 34566


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHH
Q 003710          531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTA  607 (801)
Q Consensus       531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~  607 (801)
                      ..|..+...+.+.|+.++|.+.++...+.   .|+ ......++.++...|+.+++.++++....  ..|+..|..+..+
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            67888888899999999999999999854   676 78889999999999999998888876543  3567889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      +...|+.+.|...++++++..|+|+.....+++++...|+.++|.+++...-
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999987654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.42  E-value=8.8e-08  Score=100.99  Aligned_cols=405  Identities=10%  Similarity=0.063  Sum_probs=285.5

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHH
Q 003710          246 SIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFS  322 (801)
Q Consensus       246 ~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~  322 (801)
                      ....+.+.|+-++...++.- +.+...+    -+|++..-++.|.+++++.   ...+...|.+-...--.+|+.+...+
T Consensus       387 VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k  461 (913)
T KOG0495|consen  387 VELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK  461 (913)
T ss_pred             HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence            33444445565665555542 2223322    3344445556666666554   33455666665555556666666666


Q ss_pred             HHHHH----HhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccCChHHHHHHHh
Q 003710          323 CLRKM----LEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPN--VALETALIDMYAGSGALKMTEKLFG  396 (801)
Q Consensus       323 l~~~m----~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~  396 (801)
                      ++.+-    ... |+..+..-|..=..+|-..|..-.+..+....+..|++..  ..+++.-.+.+.+.+.++-|+.+|.
T Consensus       462 ii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya  540 (913)
T KOG0495|consen  462 IIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA  540 (913)
T ss_pred             HHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence            55443    333 7777777777777777777888888888777777777543  4566667777888888888888877


Q ss_pred             cCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCch
Q 003710          397 SMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNI  473 (801)
Q Consensus       397 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~  473 (801)
                      ...+   .+...|...+..=-..|..++-..+|++.... ++-...-+.....-.-..|++..|+.++..+.+.. +.+.
T Consensus       541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse  618 (913)
T KOG0495|consen  541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE  618 (913)
T ss_pred             HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH
Confidence            6543   35566776666666677888888888887764 22223333333444555788888888888887765 3366


Q ss_pred             HHHHHHHHHHHhcCCccccc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 003710          474 YISNSIVYMYAKCGDLQTAR-----------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCS  541 (801)
Q Consensus       474 ~~~~~li~~y~~~g~~~~A~-----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~  541 (801)
                      .++-+-+.......+++.|+           ....|.--+......++.++|++++++.++  .-|+-. .|..+...+-
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEE  696 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHH
Confidence            77777788888888888877           334566666667778899999999999888  567755 5777777888


Q ss_pred             ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHH
Q 003710          542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAE  618 (801)
Q Consensus       542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~  618 (801)
                      +.++++.|.+.|..=.+   .-|+ +..|-.|.++=-+.|.+-.|..++++...  ..+...|...+..-.++|+.+.|+
T Consensus       697 ~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             HHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            88999999988876442   3465 77888899999999999999999998754  356789999999999999999999


Q ss_pred             HHHHHHHccCCC------------------------------CchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          619 FAARHVLSSAQD------------------------------NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       619 ~~~~~~~~~~p~------------------------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      .+..++++-.|.                              |+.+....+.++....+++.|++.|.+....+.
T Consensus       774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            988888776553                              466677888999999999999999998876543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=3.2e-10  Score=115.13  Aligned_cols=404  Identities=14%  Similarity=0.086  Sum_probs=244.6

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhcC
Q 003710          206 MIGGYCSVGDGVSSLVFFKEMQNCGLRYD-RFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD-VMVQTSLVDMYGKC  283 (801)
Q Consensus       206 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~li~~y~~~  283 (801)
                      .-+-|.++|.+++|++.|.+..+  +.|| +..|...-.+|...|+++.+.+--...++.  .|+ +-.+..-..++-..
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence            34557778888888888888776  4677 444555555566778888777776666554  333 33344444566666


Q ss_pred             CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHHHh--CCCCCCChhhHHHHHHHHhccCCh
Q 003710          284 GVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCL--------RKMLE--DDNLNPDCITIINLLPSCTKLGAL  353 (801)
Q Consensus       284 g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~--------~~m~~--~~g~~pd~~t~~~ll~~~~~~g~~  353 (801)
                      |++++|+.=         +|-.++..++-...-.--+.+++        .+-.+  ...+.|+.....+.+..+...-..
T Consensus       197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~  267 (606)
T KOG0547|consen  197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP  267 (606)
T ss_pred             ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence            777766531         12222222222221111122222        22111  123455555544444433211000


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-CChHHHHHHHhcC-------CCC---CHH------HHHHHHHHHHHc
Q 003710          354 LEGKSIHGYAIRKGFLPNVALETALIDMYAGS-GALKMTEKLFGSM-------IEK---NLV------SWNAMIAAYVRN  416 (801)
Q Consensus       354 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g~~~~A~~~f~~~-------~~~---~~~------~~~~li~~~~~~  416 (801)
                              .+...+-..|...-+.+=..|.+. ..+..|...+.+-       ...   |..      +.+....-+.-.
T Consensus       268 --------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~  339 (606)
T KOG0547|consen  268 --------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK  339 (606)
T ss_pred             --------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence                    000000001111111111111111 1222222222211       111   111      111111223446


Q ss_pred             CCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710          417 GQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV  496 (801)
Q Consensus       417 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~  496 (801)
                      |+.-.|.+-|+..+.....++.. |.-+-.+|....+.++....|+...+.. +-+..+|..-..++.            
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f------------  405 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF------------  405 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH------------
Confidence            88889999999988765444432 6666677888999999999999998765 334444443333333            


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                                -.+++++|+.=|++.+.  +.|+. ..|.-+-.+..+.+.+++++..|++..+++   |+ ++.|+....
T Consensus       406 ----------lL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAe  470 (606)
T KOG0547|consen  406 ----------LLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAE  470 (606)
T ss_pred             ----------HHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHH
Confidence                      34566667999999887  66754 467777778888999999999999998764   55 899999999


Q ss_pred             HHHhcCCHHHHHHHHHhCCC-CCC---------cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Q 003710          575 LLGRIGNLDQAKRFIEEMPS-APT---------ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE  644 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~-~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~  644 (801)
                      .+..++++++|.+.++.... +|+         +.+-.+++-.-.+ +|+..|+.+++++++++|....+|..|+.+-.+
T Consensus       471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ  549 (606)
T KOG0547|consen  471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQ  549 (606)
T ss_pred             HHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            99999999999999987643 333         2222333333333 899999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHH
Q 003710          645 AGRWEDVEQIKAIMEK  660 (801)
Q Consensus       645 ~g~~~~a~~~~~~m~~  660 (801)
                      .|+.++|.++|+.-..
T Consensus       550 ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  550 RGKIDEAIELFEKSAQ  565 (606)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            9999999999987543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.4e-09  Score=108.33  Aligned_cols=354  Identities=13%  Similarity=0.134  Sum_probs=253.9

Q ss_pred             CCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH--H
Q 003710          265 GLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITII--N  342 (801)
Q Consensus       265 g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~--~  342 (801)
                      +...|...+-..--.+-+.|....|...|......-+..|.+.+.-..-.-+.+.+..+..      +...|..-+.  -
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F  232 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFF  232 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHH
Confidence            4445555444444556677888889888888766555556555443322222222222211      2222222111  2


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHc
Q 003710          343 LLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRN  416 (801)
Q Consensus       343 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~  416 (801)
                      +..++....+.+++.+-.......|++.+...-+....++-...+++.|+.+|+++...      |..+|+.++  |+++
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~  310 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence            34466666788888888888888898888877777777777888999999999998654      445666544  3443


Q ss_pred             CCHHH---HHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc
Q 003710          417 GQNRE---AMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR  493 (801)
Q Consensus       417 g~~~~---A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  493 (801)
                      .+..-   |..+++   -...+  ..|...+-+-|+-.++.++|...|+...+.+-.                       
T Consensus       311 ~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-----------------------  362 (559)
T KOG1155|consen  311 DKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-----------------------  362 (559)
T ss_pred             hhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-----------------------
Confidence            33221   222221   11233  346667777788888999999999999886522                       


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC  571 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~  571 (801)
                      -...|+.|..-|....+...|++-++..++  +.| |-..|-.|..+|.-.+...-|+-+|+...   .++|+ ...|.+
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~a  437 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVA  437 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHH
Confidence            235799999999999999999999999998  555 56689999999999999999999999876   56776 899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHc-------cCCCCchhHHHHHHHH
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPSAP--TARIWGALLTASRKNNDIVSAEFAARHVLS-------SAQDNTGCYVLLSNMY  642 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~y  642 (801)
                      |.++|.+.++++||.+.|++...-.  +...+..|...+.+.++.++|...+++-++       .+|....+-..|+.-+
T Consensus       438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f  517 (559)
T KOG1155|consen  438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF  517 (559)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            9999999999999999999876433  347788899999999999999999998886       2343444556788999


Q ss_pred             HHcCCchHHHHHHHHHH
Q 003710          643 AEAGRWEDVEQIKAIME  659 (801)
Q Consensus       643 ~~~g~~~~a~~~~~~m~  659 (801)
                      .+.++|++|..+-....
T Consensus       518 ~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  518 KKMKDFDEASYYATLVL  534 (559)
T ss_pred             HhhcchHHHHHHHHHHh
Confidence            99999999988776544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=1.7e-10  Score=122.04  Aligned_cols=198  Identities=12%  Similarity=0.053  Sum_probs=143.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHH
Q 003710          402 NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIV  480 (801)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li  480 (801)
                      .+.+|-++..+|.-+++.+.|++.|++..+  +.| ...+|+.+-                                   
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlG-----------------------------------  462 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLG-----------------------------------  462 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcC-----------------------------------
Confidence            467888888888888888888888887765  333 233333222                                   


Q ss_pred             HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 003710          481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKD  559 (801)
Q Consensus       481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  559 (801)
                                            .-+.....++.|...|+..+.  +.|... .|..|...|.+.++++.|.-.|+...  
T Consensus       463 ----------------------hE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~--  516 (638)
T KOG1126|consen  463 ----------------------HESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV--  516 (638)
T ss_pred             ----------------------ChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh--
Confidence                                  223334455566667766654  445443 56677778888888888888888765  


Q ss_pred             cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710          560 YGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV  636 (801)
Q Consensus       560 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  636 (801)
                       .+.|. .....++...+.+.|+.|+|++++++...  ..|+..----...+...++.++|...+|++.++-|++..+|.
T Consensus       517 -~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~  595 (638)
T KOG1126|consen  517 -EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA  595 (638)
T ss_pred             -cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence             56776 66777788888888888888888887642  223333333444566678999999999999999999999999


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          637 LLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       637 ~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +++.+|-+.|+.+.|..-|..+.+...
T Consensus       596 llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  596 LLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            999999999999999999988876543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=2.5e-07  Score=94.05  Aligned_cols=501  Identities=12%  Similarity=0.078  Sum_probs=305.7

Q ss_pred             ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710           98 DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV  177 (801)
Q Consensus        98 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  177 (801)
                      +...|-.....-...+++..|..+|++.+.-. ..+...|-.-+..=.+...+..|+.+++..+..-...|. .|-..+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence            34445444444555667777888888776533 233334444445545667777788888877765433333 2333444


Q ss_pred             HHHhcCCchHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710          178 MYMKLGCVECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK  255 (801)
Q Consensus       178 ~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~  255 (801)
                      +=-..|++..|+++|++-.  +||.-.|++.|.-=.+-..++.|..+|++..-  +.|+..+|.--.+.=-+.|....++
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence            4455688888888887744  78888888888888888888888888888765  4588888877777777788888888


Q ss_pred             HHHHHHHHh-CC-CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC----C-CcccHHHHHHHHHhCCCh---hHHHHHHH
Q 003710          256 EIHCQVIKS-GL-EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP----R-NIVAWNAMVGGYVVNAHF---LESFSCLR  325 (801)
Q Consensus       256 ~l~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~----~-~~~~~~~li~~~~~~g~~---~~A~~l~~  325 (801)
                      .++...++. |- ..+..++++....=.++..++.|.-+|.-..+    . ....|.....-=-+.|+.   ++++--=+
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            888877764 21 11223344444444455666666666654321    1 111222222221222221   22221111


Q ss_pred             HHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----
Q 003710          326 KMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK----  401 (801)
Q Consensus       326 ~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----  401 (801)
                      +++                               ++.+++. -+.|-.+|--.++.-...|+.+..+++|++....    
T Consensus       308 k~q-------------------------------YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~  355 (677)
T KOG1915|consen  308 KFQ-------------------------------YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA  355 (677)
T ss_pred             hhH-------------------------------HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence            111                               1112221 1234444445555555566666666666655221    


Q ss_pred             -CHHHHHHHHH--------HHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHH----hhcChhhHHHHHHHHHHhC
Q 003710          402 -NLVSWNAMIA--------AYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYA----EIATLSDSMQIHSLITKLG  468 (801)
Q Consensus       402 -~~~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g  468 (801)
                       .-..|.-.|-        .=....+.+.+.++|+..++ =++-..+||.-+=-.++    +..++..|+++++.++  |
T Consensus       356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G  432 (677)
T KOG1915|consen  356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--G  432 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--c
Confidence             1122322221        11245788889999988887 24446778876544443    4678899999988776  4


Q ss_pred             CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 003710          469 LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDE  548 (801)
Q Consensus       469 ~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  548 (801)
                      ..|...++...|++-.+.+                      +++..-++|++.++-+ +-|-.+|.....-=...|+.+.
T Consensus       433 ~cPK~KlFk~YIelElqL~----------------------efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR  489 (677)
T KOG1915|consen  433 KCPKDKLFKGYIELELQLR----------------------EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR  489 (677)
T ss_pred             cCCchhHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence            5677777766666555544                      4555589999999854 2355677777777777899999


Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHH-----hcC----------
Q 003710          549 GWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASR-----KNN----------  612 (801)
Q Consensus       549 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~-----~~g----------  612 (801)
                      |..+|+...+...+..-...|-+.|+.=...|.++.|..+++++.. .+...+|.++..--.     ..+          
T Consensus       490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~  569 (677)
T KOG1915|consen  490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITD  569 (677)
T ss_pred             HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcch
Confidence            9999999887533333366788888888999999999999998875 356668888776543     233          


Q ss_pred             -CHHHHHHHHHHHHcc----CCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          613 -DIVSAEFAARHVLSS----AQDN--TGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       613 -~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                       +...|..+++.+...    .|..  ...+...-++=...|.-.+...+-+.|.+
T Consensus       570 ~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  570 ENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence             556777788777642    3321  12233344455666666666666666643

>TIGR00540 hemY_coli hemY protein

Probab=99.27  E-value=4.4e-09  Score=114.23  Aligned_cols=289  Identities=11%  Similarity=0.024  Sum_probs=155.8

Q ss_pred             hCCChhHHHHHHHHHHhCCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHH
Q 003710          313 VNAHFLESFSCLRKMLEDDNLNPDCI-TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMT  391 (801)
Q Consensus       313 ~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A  391 (801)
                      ..|+++.|.+.+.+..+.   .|+.. .+...-.+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+.+.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            356666776666655432   34432 22333445556677777777777666543222223444456777788888888


Q ss_pred             HHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH---HhhcChhhHHHHHHHHH
Q 003710          392 EKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY---AEIATLSDSMQIHSLIT  465 (801)
Q Consensus       392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~---~~~~~~~~a~~i~~~~~  465 (801)
                      ...++.+.+   .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+.   ...+..+.+.+.+..+.
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888887743   255677788888888899999999988888876443222111111111   11112222222332222


Q ss_pred             HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhc
Q 003710          466 KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF---VSLLSSCSI  542 (801)
Q Consensus       466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~  542 (801)
                      +..  |+                 +.-.+...+..++..+...|+.++|++++++..+.  .||....   .........
T Consensus       253 ~~~--p~-----------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~  311 (409)
T TIGR00540       253 KNQ--PR-----------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLK  311 (409)
T ss_pred             HHC--CH-----------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcC
Confidence            211  10                 00002334455555666666666668888887773  4554421   111112233


Q ss_pred             cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCcchHHHHHHHHHhcCCHHHHHH
Q 003710          543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE--M-PSAPTARIWGALLTASRKNNDIVSAEF  619 (801)
Q Consensus       543 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~  619 (801)
                      .++.+.+.+.++...+...-.|+.....+|..++.+.|++++|.+.|+.  . ...|+...+..|...+...|+.+.|.+
T Consensus       312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4666667666666654322222214455666666666666666666662  2 224555555555555555555555555


Q ss_pred             HHHHHH
Q 003710          620 AARHVL  625 (801)
Q Consensus       620 ~~~~~~  625 (801)
                      ++++.+
T Consensus       392 ~~~~~l  397 (409)
T TIGR00540       392 MRQDSL  397 (409)
T ss_pred             HHHHHH
Confidence            555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=3.8e-09  Score=106.02  Aligned_cols=408  Identities=12%  Similarity=0.111  Sum_probs=241.5

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHHhcCCChHHHHHHHhhcCC--CC------cccHHHHHHHHHhCCC
Q 003710          246 SIEGCLKIGKEIHCQVIKSGLEMDVMVQT-SLVDMYGKCGVVDYAERLFNMIFP--RN------IVAWNAMVGGYVVNAH  316 (801)
Q Consensus       246 ~~~~~~~~a~~l~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~lf~~m~~--~~------~~~~~~li~~~~~~g~  316 (801)
                      .......+|...++-+++..+-|+..... .+-+.|.+...+.+|.++++....  |+      +...|.+--.+.+.|+
T Consensus       212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq  291 (840)
T KOG2003|consen  212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ  291 (840)
T ss_pred             hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence            33445556666666666666655543321 223456666677777777654421  11      1223333445677788


Q ss_pred             hhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC------------CchhHHHHHHH----
Q 003710          317 FLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL------------PNVALETALID----  380 (801)
Q Consensus       317 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~------------~~~~~~~~Li~----  380 (801)
                      +++|+.-|...++.   .|+..+-..++-.+-..|+-+..++.|..|+.....            |+....|--|.    
T Consensus       292 y~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l  368 (840)
T KOG2003|consen  292 YDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL  368 (840)
T ss_pred             chhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence            88888888777654   677776666666666677777777777777654222            22222222221    


Q ss_pred             -HHHccC--ChHHHH----HHHhcCCCCCHH---HHH------------------HHHHHHHHcCCHHHHHHHHHHHhCC
Q 003710          381 -MYAGSG--ALKMTE----KLFGSMIEKNLV---SWN------------------AMIAAYVRNGQNREAMELFQDLWSE  432 (801)
Q Consensus       381 -~y~k~g--~~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~l~~~m~~~  432 (801)
                       -.-+..  +.+++.    ++..-...++-.   -|.                  .-..-|.++|+++.|+++++-+...
T Consensus       369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k  448 (840)
T KOG2003|consen  369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK  448 (840)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence             111111  111111    122222222211   111                  0123478899999999999888655


Q ss_pred             CCCCCHhhHHH--HHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc---------hHH---HH
Q 003710          433 PLKPDAMTFAS--ILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVV---SW  498 (801)
Q Consensus       433 g~~pd~~t~~~--ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---------d~~---~~  498 (801)
                      .-+.-...-+.  .|.-.-...++..|.+.-+..+... .-+......-.+.-...|+++.|.         |..   ..
T Consensus       449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal  527 (840)
T KOG2003|consen  449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL  527 (840)
T ss_pred             cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence            43322222222  2222222334555555555444211 001111000111122345555554         222   22


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710          499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG  577 (801)
Q Consensus       499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~  577 (801)
                      -.+.-.+-..|+.++|++.|-++..- +.-+...+.-+.+.|-...+...|++++.+..   .+.|+ +.+.+-|.++|-
T Consensus       528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhh
Confidence            22334566789999999999887542 23355567777788888889999999988775   45565 899999999999


Q ss_pred             hcCCHHHHHHHHHh-CCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710          578 RIGNLDQAKRFIEE-MPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK  655 (801)
Q Consensus       578 ~~g~~~eA~~~~~~-m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~  655 (801)
                      +.|+-.+|.+..-. ..- ..+..+..-|...|....-.+.+...++++--+.|....-...++..+.+.|++..|..++
T Consensus       604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            99999999987544 332 3455666666667777777889999999998888887666667777888999999999999


Q ss_pred             HHHHHC
Q 003710          656 AIMEKE  661 (801)
Q Consensus       656 ~~m~~~  661 (801)
                      +....+
T Consensus       684 k~~hrk  689 (840)
T KOG2003|consen  684 KDIHRK  689 (840)
T ss_pred             HHHHHh
Confidence            888654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.9e-10  Score=121.71  Aligned_cols=161  Identities=12%  Similarity=0.121  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC-  571 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-  571 (801)
                      ...+|-++.++|.-+++.+.|++.|++.++  +.| ...+|+.+..-+.....+|.|...|+...     ..++.||++ 
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw  492 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW  492 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence            567999999999999999999999999988  677 67789988888888999999999999754     456667776 


Q ss_pred             --HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710          572 --IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR  647 (801)
Q Consensus       572 --li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~  647 (801)
                        |.-.|.+.++++.|+-.|++... .| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-...+.++...++
T Consensus       493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR  572 (638)
T ss_pred             HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence              45679999999999999998864 45 455666677778899999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHC
Q 003710          648 WEDVEQIKAIMEKE  661 (801)
Q Consensus       648 ~~~a~~~~~~m~~~  661 (801)
                      +++|...++++++-
T Consensus       573 ~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  573 YVEALQELEELKEL  586 (638)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999999873

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=4.1e-07  Score=92.52  Aligned_cols=383  Identities=13%  Similarity=0.110  Sum_probs=263.5

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc--CCCCcccHHHHHHHHHhCCChhHHHHHH
Q 003710          247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI--FPRNIVAWNAMVGGYVVNAHFLESFSCL  324 (801)
Q Consensus       247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m--~~~~~~~~~~li~~~~~~g~~~~A~~l~  324 (801)
                      ..|++..|+++|+.-.+  ..|+...+++.|+.=.+...++.|+.++++.  ..|++.+|--....=.++|+...|..+|
T Consensus       153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            35666667777666554  3677777777777777777788888887765  5577777777777777777777777777


Q ss_pred             HHHHhCCCCCCChhhHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHccCChH---HHHHHHh
Q 003710          325 RKMLEDDNLNPDCITIINLLPSCT----KLGALLEGKSIHGYAIRKGFLP-NVALETALIDMYAGSGALK---MTEKLFG  396 (801)
Q Consensus       325 ~~m~~~~g~~pd~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~---~A~~~f~  396 (801)
                      ....+.   --|...-..++.+++    ....++.|.-++...++.--.. ....|..+...=-+-|+..   ++.---.
T Consensus       231 erAie~---~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  231 ERAIEF---LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            776643   222333334444444    3456788888888887753221 1445555555545556544   3332222


Q ss_pred             -----cCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH-------hhHHHHHHHH---HhhcChhhHH
Q 003710          397 -----SMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA-------MTFASILPAY---AEIATLSDSM  458 (801)
Q Consensus       397 -----~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~  458 (801)
                           .+...   |-.+|--.+..--..|+.+...++|++.... ++|-.       ..|..+=-+|   ....+++.++
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                 22222   5567777777777889999999999999864 56632       2233332333   3478899999


Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003710          459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS  538 (801)
Q Consensus       459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  538 (801)
                      +++...++ -++....++.-+=-||+                  .--.++.+...|-+++-..+  |.-|-..+|...|.
T Consensus       387 ~vyq~~l~-lIPHkkFtFaKiWlmyA------------------~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe  445 (677)
T KOG1915|consen  387 QVYQACLD-LIPHKKFTFAKIWLMYA------------------QFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE  445 (677)
T ss_pred             HHHHHHHh-hcCcccchHHHHHHHHH------------------HHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence            99999888 24445556655444443                  22344556666677776655  57899999999999


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCC
Q 003710          539 SCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNND  613 (801)
Q Consensus       539 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~  613 (801)
                      .=.+.+.+|....+++...+   ..|. ..+|.-...+=...|+.+.|..+|+-...+|.    ...|.+.+.--...|.
T Consensus       446 lElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E  522 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE  522 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence            99999999999999999874   4565 77888888888899999999999998877664    4677777777788999


Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHHHHHHH-----HcC-----------CchHHHHHHHHHHH
Q 003710          614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYA-----EAG-----------RWEDVEQIKAIMEK  660 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-----~~g-----------~~~~a~~~~~~m~~  660 (801)
                      ++.|..+++++++..+... +++..+..-.     +.|           ....|+++|+....
T Consensus       523 ~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  523 FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            9999999999998877543 5665555443     334           55678888877643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.25  E-value=6.2e-09  Score=112.37  Aligned_cols=86  Identities=10%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHH
Q 003710          348 TKLGALLEGKSIHGYAIRKGFLPNVALE--TALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREA  422 (801)
Q Consensus       348 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A  422 (801)
                      ...|+.+.+.+.+..+.+.  .|+....  -.....+...|+.+.|...++++.+   .+......+...|.+.|++++|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            4445555555555555432  2332222  2335566777777777777776643   2556677777888888888888


Q ss_pred             HHHHHHHhCCCCC
Q 003710          423 MELFQDLWSEPLK  435 (801)
Q Consensus       423 ~~l~~~m~~~g~~  435 (801)
                      .+++..+.+.+..
T Consensus       207 ~~~l~~l~k~~~~  219 (398)
T PRK10747        207 LDILPSMAKAHVG  219 (398)
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888776544

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=1.1e-11  Score=89.38  Aligned_cols=50  Identities=30%  Similarity=0.627  Sum_probs=47.2

Q ss_pred             CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 003710          198 RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISI  247 (801)
Q Consensus       198 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  247 (801)
                      ||+++||++|.+|++.|++++|+++|++|++.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-08  Score=105.41  Aligned_cols=266  Identities=14%  Similarity=0.070  Sum_probs=205.0

Q ss_pred             CCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHH
Q 003710          367 GFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFAS  443 (801)
Q Consensus       367 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~  443 (801)
                      |..-+..+.....+-+...+++.+..++++.+.+.|+   ..+..-|.++...|+..+-+.+=.+|.+. .+-...+|-+
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a  317 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA  317 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence            3445666667777778888889999888888866544   34555677888888888877777777764 2334678888


Q ss_pred             HHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003710          444 ILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMRE  523 (801)
Q Consensus       444 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~  523 (801)
                      +---|...|+.++|++.+.......  |.                +     ...|-.....|+-.|..++|+..+...-+
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD--~~----------------f-----gpaWl~fghsfa~e~EhdQAmaaY~tAar  374 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLD--PT----------------F-----GPAWLAFGHSFAGEGEHDQAMAAYFTAAR  374 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcC--cc----------------c-----cHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence            8777777888999998888776432  11                1     13588889999999999999988877655


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--------
Q 003710          524 KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--------  594 (801)
Q Consensus       524 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------  594 (801)
                      . ++-...-+.-+.--|.+.++.+.|.++|.+..   ++-|+ +..++-+.-+....+.+.+|..+|+....        
T Consensus       375 l-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e  450 (611)
T KOG1173|consen  375 L-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE  450 (611)
T ss_pred             h-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence            2 11122224445556888999999999999875   77786 77888888888889999999999887542        


Q ss_pred             CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          595 AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       595 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      ++ -..+|+.|..+|++.+..++|...+++++.+.|.+..+|..++-+|...|+.+.|...|.+...
T Consensus       451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            11 2345777888999999999999999999999999999999999999999999999999987654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.23  E-value=3.6e-09  Score=114.20  Aligned_cols=251  Identities=12%  Similarity=0.047  Sum_probs=113.1

Q ss_pred             HccCChHHHHHHHhcCCCC--CHHHHH--HHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhH
Q 003710          383 AGSGALKMTEKLFGSMIEK--NLVSWN--AMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDS  457 (801)
Q Consensus       383 ~k~g~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a  457 (801)
                      .+.|+.+.|...|.++.+.  +....-  .....+...|++++|...++++.+..  |+ ...+..+...+.+.|+++.+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHH
Confidence            4555666666555555322  111111  12344555566666666665555432  32 33344444555555555555


Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710          458 MQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL  537 (801)
Q Consensus       458 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  537 (801)
                      .+++..+.+.+..++.. ...+-              ...|..++.......+.+...++++.+-+. .+.+......+.
T Consensus       207 ~~~l~~l~k~~~~~~~~-~~~l~--------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A  270 (398)
T PRK10747        207 LDILPSMAKAHVGDEEH-RAMLE--------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMA  270 (398)
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHH
Confidence            55555555544322111 11000              011222222222333334444444443221 223444455555


Q ss_pred             HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCc-chHHHHHHHHHhcCCHH
Q 003710          538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA-RIWGALLTASRKNNDIV  615 (801)
Q Consensus       538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ll~~~~~~g~~~  615 (801)
                      .++...|+.++|.+.++...+   ..|+....  ++.+....++.+++.+.+++... .|+. ..+.++...|...|+++
T Consensus       271 ~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~  345 (398)
T PRK10747        271 EHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ  345 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence            555555555555555555443   12332111  11122233555555555554432 2332 23445555555555555


Q ss_pred             HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710          616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI  657 (801)
Q Consensus       616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~  657 (801)
                      .|+..++++++..|++ ..|..|+.++.+.|+.++|..++++
T Consensus       346 ~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        346 EASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555555543 2344555555555555555555543

>PF13041 PPR_2: PPR repeat family

Probab=99.21  E-value=2.7e-11  Score=87.42  Aligned_cols=50  Identities=26%  Similarity=0.639  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHh
Q 003710          401 KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAE  450 (801)
Q Consensus       401 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~  450 (801)
                      ||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999999874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=3.1e-06  Score=89.59  Aligned_cols=302  Identities=13%  Similarity=0.101  Sum_probs=173.7

Q ss_pred             HHHHHHHcCCChHHHHHHHhhCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcC
Q 003710           73 RALQELVSSGSMESACYLFEKMS-----YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGL  147 (801)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  147 (801)
                      .-+..+.++|++..-++.|++..     ......|...|......+-++-++.+|++..+-    ++..-.--|.-++..
T Consensus       107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~  182 (835)
T KOG2047|consen  107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS  182 (835)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence            45566667888888888888743     234557888888888888888899999888753    333356667777888


Q ss_pred             CChhHHHHHHHHHHHhC------CCCchhhHhHHHHHHHhcCC---chHHHHhhccCCCC--C--cccHHHHHHHHHcCC
Q 003710          148 LYLSEGEKVHGSLFKSG------LNSDVYVCNSLIVMYMKLGC---VECAERMFDEMPVR--D--TVSWNSMIGGYCSVG  214 (801)
Q Consensus       148 ~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~m~~~--d--~~~~~~li~~~~~~g  214 (801)
                      +++++|.+.++.++...      ...+-..|+.+.+..++.-+   --....+++.+..+  |  ...|++|..-|.+.|
T Consensus       183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g  262 (835)
T KOG2047|consen  183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG  262 (835)
T ss_pred             cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence            88888888887776321      14455667777776665432   22344455555432  3  346899999999999


Q ss_pred             ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhcCCChHHHHHHH
Q 003710          215 DGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEM-DVMVQTSLVDMYGKCGVVDYAERLF  293 (801)
Q Consensus       215 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~lf  293 (801)
                      .+++|.++|++-...-  .+..-|+.+.++|+.......+..+- .....+..+ +..             +++-...-|
T Consensus       263 ~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~  326 (835)
T KOG2047|consen  263 LFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARF  326 (835)
T ss_pred             hhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHH
Confidence            9999999998876542  33445666666665433222221111 000011111 110             112222222


Q ss_pred             hhc---------------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh------hHHHHHHHHhccCC
Q 003710          294 NMI---------------FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI------TIINLLPSCTKLGA  352 (801)
Q Consensus       294 ~~m---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~~~ll~~~~~~g~  352 (801)
                      +.+               ...++..|..-+..  ..|+..+-...|.+..+.  +.|...      .+..+-+.|-..|+
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~  402 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGD  402 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCc
Confidence            222               11244445444432  345666666666666553  333322      24444555556667


Q ss_pred             hHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCChHHHHHHHhcC
Q 003710          353 LLEGKSIHGYAIRKGFLPN---VALETALIDMYAGSGALKMTEKLFGSM  398 (801)
Q Consensus       353 ~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~  398 (801)
                      ++.|+.+|+...+..++.-   ..+|-...++=.+..+++.|.++.+..
T Consensus       403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            7777777766666544332   334444445555555666666665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.20  E-value=1.4e-10  Score=119.57  Aligned_cols=253  Identities=15%  Similarity=0.096  Sum_probs=97.3

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710          106 IRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC  184 (801)
Q Consensus       106 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  184 (801)
                      ...+.+.|++++|++++.+......+|+...|- .+...+...++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            455556677777777775443332133333333 3333445567777777777777766532 55566677776 67788


Q ss_pred             chHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 003710          185 VECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQV  261 (801)
Q Consensus       185 ~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~  261 (801)
                      +++|.++++..-  .++...+..++..+.+.++++++.+++++..... ...+...|......+.+.|+.++|...+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888776653  3466677888888888899999988888876533 3445566667777778888888888888888


Q ss_pred             HHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh
Q 003710          262 IKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI  338 (801)
Q Consensus       262 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~  338 (801)
                      ++.. +.|..+.+.++..+...|+.+++.++++..   .+.|...|..+..+|...|+.++|+..|++..+.  .+.|..
T Consensus       173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~  249 (280)
T PF13429_consen  173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL  249 (280)
T ss_dssp             HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence            8874 235777888888899889888877776655   3456778888888888889999999999888764  222444


Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHH
Q 003710          339 TIINLLPSCTKLGALLEGKSIHGYA  363 (801)
Q Consensus       339 t~~~ll~~~~~~g~~~~a~~~~~~~  363 (801)
                      +...+..++...|+.++|.++...+
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHT---------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            5555556666666666666555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.6e-07  Score=93.95  Aligned_cols=350  Identities=12%  Similarity=0.120  Sum_probs=223.3

Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH-HHHHHHHhCCChhHHHH
Q 003710          244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN-AMVGGYVVNAHFLESFS  322 (801)
Q Consensus       244 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~-~li~~~~~~g~~~~A~~  322 (801)
                      ...+.|....|...+-..+..- +   ..|.+-+....-..+.+.+..+-...+..+...-. -+..+|-...+.++++.
T Consensus       173 v~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~  248 (559)
T KOG1155|consen  173 VLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ  248 (559)
T ss_pred             HHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777666655321 2   22333333333334444444443333332111111 12345555567788888


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCC--hH-HHHHHHhc
Q 003710          323 CLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF--LPNVALETALIDMYAGSGA--LK-MTEKLFGS  397 (801)
Q Consensus       323 l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~k~g~--~~-~A~~~f~~  397 (801)
                      -....... |+.-+...-+..-.+.-...++++|..+|+++.+...  -.|..+|+.++  |.+..+  +. -|..++ .
T Consensus       249 k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~  324 (559)
T KOG1155|consen  249 KKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-N  324 (559)
T ss_pred             HHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-H
Confidence            77777766 6655554444444455567899999999999988742  12566666654  333332  21 222332 2


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710          398 MIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYIS  476 (801)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~  476 (801)
                      +.+--+.|...+..-|.-.++.++|...|+..++.  .|. ...|+.+-.-|...++...|.+-++.+++..  |.    
T Consensus       325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~----  396 (559)
T KOG1155|consen  325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PR----  396 (559)
T ss_pred             hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--ch----
Confidence            22223456666777788889999999999998764  444 3445566667888888888888888777643  21    


Q ss_pred             HHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 003710          477 NSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDS  555 (801)
Q Consensus       477 ~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~  555 (801)
                                       |-..|-.|..+|...+...=|+-.|++..+  ++|+ ...|.+|...|.+.++.++|++.|..
T Consensus       397 -----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  397 -----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             -----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                             567788888888888888888888888887  5664 55788888888889999999998888


Q ss_pred             hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHc
Q 003710          556 MRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS------APTARIW---GALLTASRKNNDIVSAEFAARHVLS  626 (801)
Q Consensus       556 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~  626 (801)
                      ...-  -..+...|..|.++|-+.++.++|..++++-..      ..+..+.   .-|..-+.+.+++++|...+.+++.
T Consensus       458 ai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  458 AILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            7752  233567888889999999999988887765432      1222111   1244556778888888887777776


Q ss_pred             cCCC
Q 003710          627 SAQD  630 (801)
Q Consensus       627 ~~p~  630 (801)
                      .++.
T Consensus       536 ~~~e  539 (559)
T KOG1155|consen  536 GETE  539 (559)
T ss_pred             CCch
Confidence            6443

>TIGR00540 hemY_coli hemY protein

Probab=99.19  E-value=1.1e-08  Score=111.19  Aligned_cols=296  Identities=12%  Similarity=-0.000  Sum_probs=176.3

Q ss_pred             hHHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710          101 IWNVVIRGFV--DNGLFQEAVEFHHRMVCEGFKADYFT-YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV  177 (801)
Q Consensus       101 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  177 (801)
                      ....+.+++.  ..|+++.|.+.+.+..+.  .|+... +-....+....|+.+.+.+.+....+....+...+.-....
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~  161 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence            3444555554  468888888888776554  344332 23334555667888888888877766532222234444566


Q ss_pred             HHHhcCCchHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 003710          178 MYMKLGCVECAERMFDEMPV--R-DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIG  254 (801)
Q Consensus       178 ~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a  254 (801)
                      .+...|+++.|...++.+.+  | +...+..+...+.+.|++++|.+++..+.+.++.+.. .+..+-.           
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~-----------  229 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ-----------  229 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------
Confidence            67777788877777777652  2 4556677777777788888787777777766543221 1111000           


Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003710          255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDD  331 (801)
Q Consensus       255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  331 (801)
                                      ..+..++..-......+...+.++..+.   .+...+..+...+...|+.++|.+++++..+. 
T Consensus       230 ----------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-  292 (409)
T TIGR00540       230 ----------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-  292 (409)
T ss_pred             ----------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence                            0011111111111223333444444433   35566666667777777777777777777653 


Q ss_pred             CCCCChhhHH-HHHH--HHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHccCChHHHHHHHh--cC--CCCC
Q 003710          332 NLNPDCITII-NLLP--SCTKLGALLEGKSIHGYAIRKGFLPNV--ALETALIDMYAGSGALKMTEKLFG--SM--IEKN  402 (801)
Q Consensus       332 g~~pd~~t~~-~ll~--~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~--~~--~~~~  402 (801)
                        .||..... .++.  .....++.+.+.+.++...+.. +-|.  ....++...+.+.|++++|.+.|+  ..  ..|+
T Consensus       293 --~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~  369 (409)
T TIGR00540       293 --LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD  369 (409)
T ss_pred             --CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence              34443210 1222  2223456666666666665542 2334  566788888888899999999888  34  3567


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003710          403 LVSWNAMIAAYVRNGQNREAMELFQDLW  430 (801)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~l~~~m~  430 (801)
                      ...+..+...+.+.|+.++|.+++++-.
T Consensus       370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       370 ANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7777788888889999999988888753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=7.6e-08  Score=93.38  Aligned_cols=298  Identities=12%  Similarity=0.106  Sum_probs=160.1

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHccCChHH
Q 003710          314 NAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKG-FLPN--VALETALIDMYAGSGALKM  390 (801)
Q Consensus       314 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~~~  390 (801)
                      +.+.++|.++|-+|.+.  -+-...+-.++-+.+.+.|..+.|..+|+.+.++- +..+  ....-.|..-|.+.|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            46778888888888763  11222244566677778888888888888777642 2211  2334456677888888888


Q ss_pred             HHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh----HHHHHHHHHhhcChhhHHHHHHH
Q 003710          391 TEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT----FASILPAYAEIATLSDSMQIHSL  463 (801)
Q Consensus       391 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~  463 (801)
                      |+.+|..+.+.+.   .....|+..|-+..+|++|++.-+++...+-++..+-    |.-+-.......+++.|+..+..
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            8888888876443   3455678888888888888888888876554443321    22222222233444555555444


Q ss_pred             HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710          464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS  543 (801)
Q Consensus       464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  543 (801)
                      ..+..-+.                       +..=-.+...+...|+++.|++.++...+.+..--..+...|..+|.+.
T Consensus       206 Alqa~~~c-----------------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         206 ALQADKKC-----------------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             HHhhCccc-----------------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            44322100                       0011122334455555555555555555433111122344444555555


Q ss_pred             CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 003710          544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARH  623 (801)
Q Consensus       544 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  623 (801)
                      |+.+++..++..+.+.   .+....-..|.+.-....-.                                +.|...+.+
T Consensus       263 g~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~--------------------------------~~Aq~~l~~  307 (389)
T COG2956         263 GKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGI--------------------------------DAAQAYLTR  307 (389)
T ss_pred             CCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhCh--------------------------------HHHHHHHHH
Confidence            5555555555544432   22333333333333333333                                333344444


Q ss_pred             HHccCCCCchhHHHHHHHH--HHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710          624 VLSSAQDNTGCYVLLSNMY--AEAGRWEDVEQIKAIMEKEGLKKTTGCSM  671 (801)
Q Consensus       624 ~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  671 (801)
                      -+...|.--+.|.++---.  +..|++.+...++..|....++..|.+.-
T Consensus       308 Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC  357 (389)
T COG2956         308 QLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC  357 (389)
T ss_pred             HHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence            4444444333332222211  34466888888888888877777665444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.14  E-value=1.4e-05  Score=84.78  Aligned_cols=524  Identities=14%  Similarity=0.121  Sum_probs=275.9

Q ss_pred             HHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 003710           85 ESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE-GFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS  163 (801)
Q Consensus        85 ~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  163 (801)
                      +.++....+||    ..|-.-+..+.+.|+.......|++.... .+.-....|...++.....+-++.+..++.+.++.
T Consensus        92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~  167 (835)
T KOG2047|consen   92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV  167 (835)
T ss_pred             HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            44555555565    37877888888888888888888876543 34445567888888888888888888888888765


Q ss_pred             CCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCC----------CcccHHHHHHHHHcCCChhhH---HHHHHHHHhCC
Q 003710          164 GLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR----------DTVSWNSMIGGYCSVGDGVSS---LVFFKEMQNCG  230 (801)
Q Consensus       164 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----------d~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~g  230 (801)
                          ++..-+.-|..+++.+++++|.+.+......          +-..|+.+-...+++-+.-..   -.+++.+..  
T Consensus       168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--  241 (835)
T KOG2047|consen  168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--  241 (835)
T ss_pred             ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--
Confidence                3344677788888899999988888776533          233466555555554332222   222333221  


Q ss_pred             CCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHH-h---hcCCCCcccH
Q 003710          231 LRYDR--FSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLF-N---MIFPRNIVAW  304 (801)
Q Consensus       231 ~~p~~--~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf-~---~m~~~~~~~~  304 (801)
                      .-+|.  ..+.+|.+-|.+.|.++.|+.++++.+..-  ..+.-++.+-+.|+....-.-+.++= .   .-.+.+.+.+
T Consensus       242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl  319 (835)
T KOG2047|consen  242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL  319 (835)
T ss_pred             cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence            12332  234555555666666666666665554432  12222333334443322111111110 0   0000111111


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhCCCC---------CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C
Q 003710          305 NAMVGGYVVNAHFLESFSCLRKMLEDDNL---------NP-DCITIINLLPSCTKLGALLEGKSIHGYAIRKGF-----L  369 (801)
Q Consensus       305 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~---------~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~  369 (801)
                                   +-.+.-|+.+.....+         .| +..++..-..  ...|+..+-...+.++++.=-     .
T Consensus       320 -------------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G  384 (835)
T KOG2047|consen  320 -------------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG  384 (835)
T ss_pred             -------------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC
Confidence                         2223333333322111         11 1222322222  234556666777777776411     1


Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-----
Q 003710          370 PNVALETALIDMYAGSGALKMTEKLFGSMIEKNL-------VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-----  437 (801)
Q Consensus       370 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----  437 (801)
                      .-...|..+.+.|-..|+++.|+.+|++..+-+-       ..|..-...=.++.+++.|+.+.+......-.|.     
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd  464 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD  464 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence            1245688899999999999999999998754322       3455555555677888999998887753211111     


Q ss_pred             ------Hh------hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003710          438 ------AM------TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAY  505 (801)
Q Consensus       438 ------~~------t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~  505 (801)
                            ..      .|...+..--..|-++..+.+++.++...+..-..+-|-                       ..-+
T Consensus       465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-----------------------AmfL  521 (835)
T KOG2047|consen  465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-----------------------AMFL  521 (835)
T ss_pred             CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-----------------------HHHH
Confidence                  11      122222222334566666666666666554322211110                       0112


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhc
Q 003710          506 AIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSI---SGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLGRI  579 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~  579 (801)
                      -.|..++++.+.|++-+..=--|+.. .|+..|.-+.+   .-.++.|+.+|++..+  |..|.  ...|-.....=-+-
T Consensus       522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence            23445566666665543321124433 34444433322   2356777777777665  55544  12222222333345


Q ss_pred             CCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch--hHHHHHHHHHHcCCchHHHH
Q 003710          580 GNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG--CYVLLSNMYAEAGRWEDVEQ  653 (801)
Q Consensus       580 g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~g~~~~a~~  653 (801)
                      |....|+.++++......    ...|+..+.--...=-+.....+++++++.-|++..  .....+++=.+.|..+.|+.
T Consensus       600 GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa  679 (835)
T KOG2047|consen  600 GLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA  679 (835)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            666667777766544222    234444444322222223345667777766665432  23345666667777777777


Q ss_pred             HHHHHHH
Q 003710          654 IKAIMEK  660 (801)
Q Consensus       654 ~~~~m~~  660 (801)
                      ++..-.+
T Consensus       680 Iya~~sq  686 (835)
T KOG2047|consen  680 IYAHGSQ  686 (835)
T ss_pred             HHHhhhh
Confidence            6655433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.09  E-value=1e-08  Score=102.45  Aligned_cols=199  Identities=11%  Similarity=0.049  Sum_probs=152.3

Q ss_pred             HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710          438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL  517 (801)
Q Consensus       438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l  517 (801)
                      ...+..+...+...|++++|.+.+..+.+..  |+                     +...|..+...|...|++++|++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~---------------------~~~~~~~la~~~~~~~~~~~A~~~   87 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD---------------------DYLAYLALALYYQQLGELEKAEDS   87 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc---------------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3445566677778888888888888777543  22                     223556666777778888888999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 003710          518 FSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP  596 (801)
Q Consensus       518 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p  596 (801)
                      +++..+.. +.+...+..+...+...|++++|.+.|+...+..........+..+...+...|++++|.+.+++... .|
T Consensus        88 ~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521        88 FRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99888753 33455677778888899999999999998875312122356677788889999999999999887653 23


Q ss_pred             -CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          597 -TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       597 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                       +...|..+...+...|+.+.|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus       167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence             3557778888888999999999999999888888888888889999999999999998887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1e-06  Score=88.34  Aligned_cols=137  Identities=12%  Similarity=0.021  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL-SSCS-ISGMVDEGWNYFDSMRKDYGIVPG-IEHYG  570 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~  570 (801)
                      +..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++.-.   .++|+ ....+
T Consensus       367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~  442 (564)
T KOG1174|consen  367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVN  442 (564)
T ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHH
Confidence            4445555666666666666666655554432 223444444432 2222 2233578888888654   67888 77888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchh
Q 003710          571 CIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGC  634 (801)
Q Consensus       571 ~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  634 (801)
                      .+..++.+.|+.+++..++++... .||...-+.|....+..+.+++|...+..+++++|+|..+
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            888999999999999999988764 5888888889899999999999999999999999987654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.05  E-value=3.9e-07  Score=91.42  Aligned_cols=281  Identities=12%  Similarity=0.072  Sum_probs=180.9

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHH
Q 003710          314 NAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEK  393 (801)
Q Consensus       314 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~  393 (801)
                      .|++.+|.++..+-.+. +-.| ...|..-..+.-..|+.+.+-+.+.++.+.--.++..+.-+........|+.+.|..
T Consensus        97 eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            35556666555554433 2222 233444455555666666666666666665445566666666777777777777776


Q ss_pred             HHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH-------hhHHHHHHHHHhhcChhhHHHHHHH
Q 003710          394 LFGSM---IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA-------MTFASILPAYAEIATLSDSMQIHSL  463 (801)
Q Consensus       394 ~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~~~~~~a~~i~~~  463 (801)
                      -.++.   ...+.........+|.+.|++.+...++.+|.+.|+--|.       .++..+++-+...+..+.-...|+.
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            66544   4456777888888888888888888888888888765543       4667777776666666665666665


Q ss_pred             HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710          464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS  543 (801)
Q Consensus       464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  543 (801)
                      ..+. ...++.+-.+++.-+.+|                      |+.++|.++..+-.+.+..|+    ...+-.+.+-
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l----------------------~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~  307 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRL----------------------GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRP  307 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHc----------------------CChHHHHHHHHHHHHhccChh----HHHHHhhcCC
Confidence            5432 122333334444444444                      444555788888877777776    2223456677


Q ss_pred             CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 003710          544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAAR  622 (801)
Q Consensus       544 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~  622 (801)
                      ++.+.-.+..+...+.++-.|  ..+.+|..+|.+.+.|.+|.+.++.... .|+...|.-+..++...|+.+.|.+..+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            777777777666665544444  5677777777888888888877775543 5777777777777777777777777776


Q ss_pred             HHH
Q 003710          623 HVL  625 (801)
Q Consensus       623 ~~~  625 (801)
                      +.+
T Consensus       386 e~L  388 (400)
T COG3071         386 EAL  388 (400)
T ss_pred             HHH
Confidence            665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=7e-07  Score=87.54  Aligned_cols=216  Identities=12%  Similarity=0.055  Sum_probs=131.5

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH-H----hhcChhhHHHHHHH
Q 003710          389 KMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY-A----EIATLSDSMQIHSL  463 (801)
Q Consensus       389 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~----~~~~~~~a~~i~~~  463 (801)
                      +.|.+++-.+.+.=+..--.++--|.+.++..+|..+.+++..  ..|-......+..+- .    ....+.-|.+.|..
T Consensus       271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffql  348 (557)
T KOG3785|consen  271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL  348 (557)
T ss_pred             ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence            4455554433222222333456668889999999999888743  345444444443322 1    11224445555555


Q ss_pred             HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710          464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS  543 (801)
Q Consensus       464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  543 (801)
                      .-..+...|..                     .--.+|.+.+.-..++++.+-+++....- +.-|.+--..+..|.+..
T Consensus       349 VG~Sa~ecDTI---------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~at  406 (557)
T KOG3785|consen  349 VGESALECDTI---------------------PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLAT  406 (557)
T ss_pred             hcccccccccc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHh
Confidence            54554443322                     12344555666666677777777766653 233333334567788889


Q ss_pred             CCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH-HHHHHHhcCCHHHHHHHH
Q 003710          544 GMVDEGWNYFDSMRKDYGIVPGIEHY-GCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGA-LLTASRKNNDIVSAEFAA  621 (801)
Q Consensus       544 g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~  621 (801)
                      |.+.+|+++|-.+... .++ +..+| ..|..+|.+.|..+-|.+++-++....+..+..- +.+-|.+.+.+--|-+++
T Consensus       407 gny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF  484 (557)
T KOG3785|consen  407 GNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF  484 (557)
T ss_pred             cChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998877532 222 33444 4566888999999999999888764444444433 445688888888888888


Q ss_pred             HHHHccCCC
Q 003710          622 RHVLSSAQD  630 (801)
Q Consensus       622 ~~~~~~~p~  630 (801)
                      ..+-.++|.
T Consensus       485 d~lE~lDP~  493 (557)
T KOG3785|consen  485 DELEILDPT  493 (557)
T ss_pred             hHHHccCCC
Confidence            887777774

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.04  E-value=9.3e-07  Score=95.64  Aligned_cols=391  Identities=15%  Similarity=0.126  Sum_probs=256.0

Q ss_pred             HhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhh
Q 003710          263 KSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCIT  339 (801)
Q Consensus       263 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t  339 (801)
                      ...+..|..+|..|.-+..++|+++.+.+.|++...   .....|+.+-..|...|.-..|+.++++-... .-.|+..+
T Consensus       316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s  394 (799)
T KOG4162|consen  316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDIS  394 (799)
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcch
Confidence            344567889999999999999999999999998744   34567999999999999999999999887754 22244444


Q ss_pred             -HHHHHHHHh-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHccC-----------ChHHHHHHHhcCCC--
Q 003710          340 -IINLLPSCT-KLGALLEGKSIHGYAIRK--GF--LPNVALETALIDMYAGSG-----------ALKMTEKLFGSMIE--  400 (801)
Q Consensus       340 -~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~k~g-----------~~~~A~~~f~~~~~--  400 (801)
                       +...-..|. +.+..++|...-..++..  |.  ......+-.+.-+|...-           ...++...+++..+  
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence             333334444 346777777776666662  11  122334444444444221           12344555555532  


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHH
Q 003710          401 ---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYIS  476 (801)
Q Consensus       401 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~  476 (801)
                         ++++.|  +---|+..++.+.|++..++...-+-.-+...|..+.-.++..+++..|..+.+... +.|..-..  .
T Consensus       475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~  550 (799)
T KOG4162|consen  475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--M  550 (799)
T ss_pred             CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--c
Confidence               233333  334567778899999999999887656677777777777778888999998888766 33321111  1


Q ss_pred             HHHHHHHHhcCCccccchHHH-----HHHHHH----------------HHHHcCCHHHHHHHHHHHH--------HCC--
Q 003710          477 NSIVYMYAKCGDLQTARDVVS-----WNVIIM----------------AYAIHGLGKISIQLFSEMR--------EKG--  525 (801)
Q Consensus       477 ~~li~~y~~~g~~~~A~d~~~-----~~~li~----------------~~~~~g~~~~A~~l~~~m~--------~~g--  525 (801)
                      ..-+..-...++.++|.|...     |...=.                .....++..+|.+..++..        ..|  
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se  630 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE  630 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence            111112222455555542221     220000                0001112222222222211        111  


Q ss_pred             -------CCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003710          526 -------IKP--NE------STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFI  589 (801)
Q Consensus       526 -------~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~  589 (801)
                             +.|  +.      ..|......+...+..++|...+.+..   ++.|- ...|......+...|.++||.+.|
T Consensus       631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence                   122  21      124455567888899999988877765   55565 677888888999999999999988


Q ss_pred             HhCCC-CCC-cchHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          590 EEMPS-APT-ARIWGALLTASRKNNDIVSAEF--AARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       590 ~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      ..... .|+ +.+..+|...+...|+...|+.  +...+++++|.++..|..|+.++-+.|+.++|.+.|....+.
T Consensus       708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            77653 565 5677888888999999888888  999999999999999999999999999999999999887664

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.8e-05  Score=86.24  Aligned_cols=542  Identities=14%  Similarity=0.135  Sum_probs=307.8

Q ss_pred             HHHHHHcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhH
Q 003710           74 ALQELVSSGSMESACYLFEKMS-YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSE  152 (801)
Q Consensus        74 l~~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  152 (801)
                      .+..|+.+|.++++.-...+.. .||   |-.+|+.+.+ -+++++.++...|.+..-  ...-++.+...+...+....
T Consensus       487 Vi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq  560 (1666)
T KOG0985|consen  487 VIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQ  560 (1666)
T ss_pred             HHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhh
Confidence            3344444444444444433332 233   4456777666 678888888888776431  12222333322222222222


Q ss_pred             HH-------------------HHHHHHHHhCCC----------CchhhHhHHHHHHHhcCCchHHHHhhccCC--CCCcc
Q 003710          153 GE-------------------KVHGSLFKSGLN----------SDVYVCNSLIVMYMKLGCVECAERMFDEMP--VRDTV  201 (801)
Q Consensus       153 a~-------------------~~~~~~~~~g~~----------~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~  201 (801)
                      +.                   ++++.-...+..          -..+-+-.+.+.+-+.|-...|++.+..+.  .+.++
T Consensus       561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV  640 (1666)
T KOG0985|consen  561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV  640 (1666)
T ss_pred             hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH
Confidence            22                   222222222210          011224455667778888888888887765  22221


Q ss_pred             cHHH----HHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----------CC
Q 003710          202 SWNS----MIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKS-----------GL  266 (801)
Q Consensus       202 ~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-----------g~  266 (801)
                      .-+.    -+-+|.-.-.++++++.++.|...+++-|..+...+..-+...-..+.-.++|+.....           ++
T Consensus       641 hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~  720 (1666)
T KOG0985|consen  641 HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNF  720 (1666)
T ss_pred             HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcc
Confidence            1111    12345555578899999999999888888777766666555444444444444443221           34


Q ss_pred             CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-------------------C------------CcccH------HHHHH
Q 003710          267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-------------------R------------NIVAW------NAMVG  309 (801)
Q Consensus       267 ~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-------------------~------------~~~~~------~~li~  309 (801)
                      .-|+.+.-..|.+.++.|++.+.+++.++-.-                   |            |.+.|      -..|.
T Consensus       721 seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE  800 (1666)
T KOG0985|consen  721 SEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIE  800 (1666)
T ss_pred             ccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHH
Confidence            56777777889999999999999988765310                   0            11111      11244


Q ss_pred             HHHhCCChhHHHHHHHHHHhCCCCCCChh-------------hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710          310 GYVVNAHFLESFSCLRKMLEDDNLNPDCI-------------TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET  376 (801)
Q Consensus       310 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  376 (801)
                      .|++.=++.+.-.+.-.+...   .-+..             ....+..-+-+.+++..-...++..+..|. .+..++|
T Consensus       801 ~yVQkvNps~~p~VvG~LLD~---dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hn  876 (1666)
T KOG0985|consen  801 IYVQKVNPSRTPQVVGALLDV---DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHN  876 (1666)
T ss_pred             HHHhhcCCcccchhhhhhhcC---CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHh
Confidence            555443333222222222111   11111             112233344455556556666666666664 3667777


Q ss_pred             HHHHHHHccCChH----------------------------------------------------HHHHHHhcC------
Q 003710          377 ALIDMYAGSGALK----------------------------------------------------MTEKLFGSM------  398 (801)
Q Consensus       377 ~Li~~y~k~g~~~----------------------------------------------------~A~~~f~~~------  398 (801)
                      +|...|..+++-.                                                    .|+-+.+++      
T Consensus       877 AlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~  956 (1666)
T KOG0985|consen  877 ALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWA  956 (1666)
T ss_pred             hhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHH
Confidence            7777665433211                                                    011111111      


Q ss_pred             -----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh----HHHH-H-----
Q 003710          399 -----------------------IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT----FASI-L-----  445 (801)
Q Consensus       399 -----------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~l-l-----  445 (801)
                                             ...|+..-+.-+.++...+-+.+-++++++..-.   |+.++    ...| +     
T Consensus       957 ~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAik 1033 (1666)
T KOG0985|consen  957 KVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIK 1033 (1666)
T ss_pred             HHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhh
Confidence                                   0112233344455667777777778888777532   21111    1111 1     


Q ss_pred             ----------------------HHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc-------hHH
Q 003710          446 ----------------------PAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-------DVV  496 (801)
Q Consensus       446 ----------------------~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-------d~~  496 (801)
                                            ..+...+-+++|..||...     ..+....+.||+   .-++++.|.       ...
T Consensus      1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~ 1105 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA 1105 (1666)
T ss_pred             cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH
Confidence                                  1112223334444444322     222233333332   234444443       456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLL  576 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~  576 (801)
                      .|..+..+-.+.|...+|++-|-+.      -|...|..++..+.+.|.+++-.+++...+++ .-+|.+  -+.||-+|
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHH
Confidence            8999999999999999999887442      35678999999999999999999999877765 556654  45799999


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003710          577 GRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA  656 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~  656 (801)
                      ++.+++.|-.+++.    -||.........-|...|.++-|+-++..        .+.|..|+..+...|.+..|...-+
T Consensus      1177 Akt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999888874    46777777888889999999888777653        4567777777777787777765544


Q ss_pred             H
Q 003710          657 I  657 (801)
Q Consensus       657 ~  657 (801)
                      +
T Consensus      1245 K 1245 (1666)
T KOG0985|consen 1245 K 1245 (1666)
T ss_pred             h
Confidence            3

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.99  E-value=3e-07  Score=92.25  Aligned_cols=211  Identities=14%  Similarity=0.115  Sum_probs=154.4

Q ss_pred             HHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHH
Q 003710          448 YAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISI  515 (801)
Q Consensus       448 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~  515 (801)
                      .-+.|+.+.+-+++.++.+..-.++..++-+........|+.+.|+            +......+..+|.+.|++.+.+
T Consensus       128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL  207 (400)
T ss_pred             HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence            3334444444444444443322333344444444444444444443            3445667778888888888889


Q ss_pred             HHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003710          516 QLFSEMREKGIKPNE-------STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRF  588 (801)
Q Consensus       516 ~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~  588 (801)
                      .++.+|.+.|+--|.       .+|..++.-+...+..+.-...|+...+  ..+.++..-.+++.-+.++|+.++|.++
T Consensus       208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~  285 (400)
T COG3071         208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEI  285 (400)
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence            999999999976653       4788999988888888888888988876  4556677888999999999999999999


Q ss_pred             HHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          589 IEEMPSA-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       589 ~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      +++...+ -|..  -..+-.+..-++.+.=++.+++-++..|+++..+.+|+..|.+.+.|.+|.+.|+...+.+
T Consensus       286 i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~  358 (400)
T COG3071         286 IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR  358 (400)
T ss_pred             HHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            8876543 3333  3334456778888888999999999999999999999999999999999999999766544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=7.3e-07  Score=86.73  Aligned_cols=287  Identities=12%  Similarity=0.127  Sum_probs=197.0

Q ss_pred             CCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCc--hHHHHHHHHHHhcCCChHH
Q 003710          213 VGDGVSSLVFFKEMQNCGLRYD-RFSLISALGAISIEGCLKIGKEIHCQVIKSG-LEMD--VMVQTSLVDMYGKCGVVDY  288 (801)
Q Consensus       213 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~  288 (801)
                      +.+.++|+++|-+|.+.  .|. ..+-.++-+-+.+.|..+.|..+|..+.++- +..+  ....-.|..-|.+.|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            46778888888888763  222 2223455566777888888888888887652 1111  2334456678899999999


Q ss_pred             HHHHHhhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh----hHHHHHHHHhccCChHHHHHHHH
Q 003710          289 AERLFNMIFPRNI---VAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI----TIINLLPSCTKLGALLEGKSIHG  361 (801)
Q Consensus       289 A~~lf~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~~~~~~g~~~~a~~~~~  361 (801)
                      |+.+|..+.+...   .....|+..|-+..+|++|++.-+++.+. +-.+..+    .|..+-.......+++.|..++.
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999876443   34566789999999999999999999876 4444433    34455555566678899999998


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC
Q 003710          362 YAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLV----SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD  437 (801)
Q Consensus       362 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd  437 (801)
                      ...+.+ +..+...-.+-+.+...|+++.|.+.++.+.+.|..    .-..|..+|.+.|+.++....+..+.+....++
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            887764 334555556778889999999999999999877653    566788899999999999999999987644444


Q ss_pred             HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710          438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL  517 (801)
Q Consensus       438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l  517 (801)
                      ..  ..+-.......-.+.|......-++.  .|+...+..||+.-..-++                   .|...+-+.+
T Consensus       284 ~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~dae-------------------eg~~k~sL~~  340 (389)
T COG2956         284 AE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAE-------------------EGRAKESLDL  340 (389)
T ss_pred             HH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcccc-------------------ccchhhhHHH
Confidence            32  22222223333445555555444433  6888888888886543222                   2334455667


Q ss_pred             HHHHHHCCC
Q 003710          518 FSEMREKGI  526 (801)
Q Consensus       518 ~~~m~~~g~  526 (801)
                      ++.|..+.+
T Consensus       341 lr~mvge~l  349 (389)
T COG2956         341 LRDMVGEQL  349 (389)
T ss_pred             HHHHHHHHH
Confidence            777765433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.95  E-value=1.5e-05  Score=86.61  Aligned_cols=477  Identities=14%  Similarity=0.087  Sum_probs=275.0

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh---cCCCh-------------------hHHHHHH----HHHHHhC
Q 003710          111 DNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACA---GLLYL-------------------SEGEKVH----GSLFKSG  164 (801)
Q Consensus       111 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~-------------------~~a~~~~----~~~~~~g  164 (801)
                      ..++.++++.-+......+..-+..++..+-.++.   ..++.                   +++....    ..+.-..
T Consensus       239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~  318 (799)
T KOG4162|consen  239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK  318 (799)
T ss_pred             CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence            45566677776666665555555555554443322   22222                   2332221    2222234


Q ss_pred             CCCchhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 003710          165 LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISA  241 (801)
Q Consensus       165 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  241 (801)
                      +..|..+|..|.-+..++|+++.+-+.|++...   .....|+.+-..|...|.-..|+.++++-....-.|+..+-..+
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            567889999999999999999999999988652   24567999999999999999999999876554333544443333


Q ss_pred             H-HHHh-ccCChHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003710          242 L-GAIS-IEGCLKIGKEIHCQVIKSG--LE--MDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNA  315 (801)
Q Consensus       242 l-~a~~-~~~~~~~a~~l~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g  315 (801)
                      . +.|. +.+.++++..+-.++++..  ..  .....|-.+--+|...-              ....+|.      -+..
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~~  458 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERDA  458 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHHH
Confidence            3 3343 4567777776666665521  10  11112222222222110              0000000      0111


Q ss_pred             ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHH
Q 003710          316 HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLF  395 (801)
Q Consensus       316 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f  395 (801)
                      ...++++.+++..+..+-.|+...|.++-.  +..++++.|.+...+..+.+-..+...+..|.-.+...+++.+|+.+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            234566666666655455565555555443  345667777777777777766667777777777777777777777776


Q ss_pred             hcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHhCC---------------------C--C---CC--CHhhHHHH
Q 003710          396 GSMIEKNLVSWNAM---IAAYVRNGQNREAMELFQDLWSE---------------------P--L---KP--DAMTFASI  444 (801)
Q Consensus       396 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~---------------------g--~---~p--d~~t~~~l  444 (801)
                      +...+.-...++.|   |..-..-++.++|+.+...+..-                     |  .   .|  ...|+..+
T Consensus       537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l  616 (799)
T KOG4162|consen  537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL  616 (799)
T ss_pred             HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence            65422211111111   11112234555555544444210                     0  0   00  00111111


Q ss_pred             HHHHH-hhcChhhHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003710          445 LPAYA-EIATLSDSMQIHSLITKLGLVSNIY-ISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMR  522 (801)
Q Consensus       445 l~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~  522 (801)
                      ..-.. +.....-...    +.+.-..|... ++..               ....|......+...++.++|...+.+..
T Consensus       617 s~l~a~~~~~~~se~~----Lp~s~~~~~~~~~~~~---------------~~~lwllaa~~~~~~~~~~~a~~CL~Ea~  677 (799)
T KOG4162|consen  617 SSLVASQLKSAGSELK----LPSSTVLPGPDSLWYL---------------LQKLWLLAADLFLLSGNDDEARSCLLEAS  677 (799)
T ss_pred             HHHHHhhhhhcccccc----cCcccccCCCCchHHH---------------HHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            11000 0000000000    00000001000 0000               23457777788888888888888877776


Q ss_pred             HCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CC
Q 003710          523 EKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKR--FIEEMPS--AP  596 (801)
Q Consensus       523 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~m~~--~p  596 (801)
                      .  +.|- ...|......+...|..++|.+.|....   .+.|+ +....++..++.+.|+..-|..  ++..+..  ..
T Consensus       678 ~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  678 K--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             h--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence            5  3443 3345555566777899999999998775   67898 8889999999999998766666  7777653  34


Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      +...|-.|.....+.|+.+.|-+-|.-++++++.+|.
T Consensus       753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            6789999999999999999999999999999887653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.95  E-value=7.4e-08  Score=89.41  Aligned_cols=162  Identities=13%  Similarity=0.074  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                      +...+.-+|.+.|+...|.+-+++.++  ..|+.. ++..+...|.+.|..+.|.+.|+...   .+.|+ ..+.|....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence            455677889999999999999999999  457654 78888999999999999999999887   46776 888999999


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710          575 LLGRIGNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .+|..|++++|...|++....|.    ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.....+.+...+.|++-+
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            99999999999999999876654    46788888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCC
Q 003710          651 VEQIKAIMEKEGL  663 (801)
Q Consensus       651 a~~~~~~m~~~g~  663 (801)
                      |...++.....+.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999887754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.94  E-value=2.9e-07  Score=99.08  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhCC-----C-CCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhC---C-CCc-
Q 003710          405 SWNAMIAAYVRNGQNREAMELFQDLWSE-----P-LKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLG---L-VSN-  472 (801)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g---~-~~~-  472 (801)
                      +...+...|...|++++|+.+++..++.     | ..|...+.. .+-..|...+++++|..+|+.+...-   + ..+ 
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444788899999999999999887653     2 123333322 24556777888899988888877321   1 112 


Q ss_pred             --hHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHH
Q 003710          473 --IYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NES-TFVSLLSSCSISGMVDE  548 (801)
Q Consensus       473 --~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~-t~~~ll~a~~~~g~~~~  548 (801)
                        ..+++.|..+|.+.|++++|..               ..+.|++++++  ..|..+ ... -++.+...|...+.+++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~---------------~~e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Ee  343 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEE---------------YCERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEE  343 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHH---------------HHHHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhH
Confidence              2333444445555555555531               12444555555  223333 222 36677778999999999


Q ss_pred             HHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C--C-CcchHHHHHHHHHhcC
Q 003710          549 GWNYFDSMRKDYG--IVPG----IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-------A--P-TARIWGALLTASRKNN  612 (801)
Q Consensus       549 a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~-------~--p-~~~~~~~ll~~~~~~g  612 (801)
                      |..+++...+.+.  ..++    ..+|+.|..+|...|+++||.+++++...       +  + .....+.|..+|...+
T Consensus       344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k  423 (508)
T KOG1840|consen  344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK  423 (508)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence            9999988766544  2222    56899999999999999999999987642       1  1 1345667888898889


Q ss_pred             CHHHHHHHHHHHHcc----CC---CCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          613 DIVSAEFAARHVLSS----AQ---DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       613 ~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +.++|.++++....+    .|   +-..+|..|+..|...|++++|.++.+....
T Consensus       424 ~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  424 KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            998888888776542    33   4456788999999999999999999877653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=9.5e-06  Score=85.40  Aligned_cols=435  Identities=13%  Similarity=0.094  Sum_probs=257.4

Q ss_pred             HHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHh--c
Q 003710          207 IGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS--LVDMYG--K  282 (801)
Q Consensus       207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--li~~y~--~  282 (801)
                      ++-+..+|++++|++...++...+ +-|...+..-+-++.+.+.++.|..+.+.   .+.   ..+++.  +=.+||  +
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence            566778899999999999998765 44566677777888888999988854432   221   122222  245555  6


Q ss_pred             CCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CChhhHHHHHHHHhccCChHHHHHHHH
Q 003710          283 CGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLN-PDCITIINLLPSCTKLGALLEGKSIHG  361 (801)
Q Consensus       283 ~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~~~~~~g~~~~a~~~~~  361 (801)
                      .+..|+|...++...+-+..+...-...+.+.|++++|+++|+.+.+. +.. -|...-..++.+-...       .. .
T Consensus        92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l-------~~-~  162 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAAL-------QV-Q  162 (652)
T ss_pred             cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhh-------hH-H
Confidence            789999999998655555445555667788899999999999999876 322 2222222333221111       01 1


Q ss_pred             HHHHhCCCCchhHHHH---HHHHHHccCChHHHHHHHhcC--------CCC-----CHHH-----HHHHHHHHHHcCCHH
Q 003710          362 YAIRKGFLPNVALETA---LIDMYAGSGALKMTEKLFGSM--------IEK-----NLVS-----WNAMIAAYVRNGQNR  420 (801)
Q Consensus       362 ~~~~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~~--------~~~-----~~~~-----~~~li~~~~~~g~~~  420 (801)
                      .+......| ..+|..   ....+...|++.+|+++++..        .+.     ++..     ---|.-.+...|+.+
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            222222233 222322   234566789999999998876        111     1111     112334566789999


Q ss_pred             HHHHHHHHHhCCCCCCCHhhHHH---HHHHHHhhcChhh--HHHHHHHH-----------HHhCCCCchHHHHHHHHHHH
Q 003710          421 EAMELFQDLWSEPLKPDAMTFAS---ILPAYAEIATLSD--SMQIHSLI-----------TKLGLVSNIYISNSIVYMYA  484 (801)
Q Consensus       421 ~A~~l~~~m~~~g~~pd~~t~~~---ll~a~~~~~~~~~--a~~i~~~~-----------~~~g~~~~~~~~~~li~~y~  484 (801)
                      +|..++...+... .+|......   =|.+...-.++..  .+..++..           ....-...+.--++++.+|.
T Consensus       242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988764 445432222   2233333333333  11111111           11111122333456677765


Q ss_pred             hcCCccccc--------hHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 003710          485 KCGDLQTAR--------DVVSWNVIIMA-YA-IHGLGKISIQLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNY  552 (801)
Q Consensus       485 ~~g~~~~A~--------d~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~  552 (801)
                      ..++--.-.        -...+.+++.. +. +.....+|.+++...-+.  .|..  +.....+.-....|+++.|.++
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            433211100        12233344333 22 223577788888877663  3544  3444455567779999999999


Q ss_pred             HH--------HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-cchHHHHHHHHHhcCCHH
Q 003710          553 FD--------SMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM--------PSAPT-ARIWGALLTASRKNNDIV  615 (801)
Q Consensus       553 ~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~  615 (801)
                      +.        .+.+   +.-.+.+...++.+|.+.+.-+-|..++.+.        ..++. ...|.-+...-.++|+-+
T Consensus       399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~  475 (652)
T KOG2376|consen  399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE  475 (652)
T ss_pred             HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence            98        4432   2223567778889999888766555555433        22322 234444455556779999


Q ss_pred             HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCccc
Q 003710          616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCS  670 (801)
Q Consensus       616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s  670 (801)
                      +|...++++++.+|+|....+.++.+|+... .+.|..+-     +.+.+.++..
T Consensus       476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~-----k~L~p~~~l~  524 (652)
T KOG2376|consen  476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS-----KKLPPLKGLK  524 (652)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh-----hcCCCcccch
Confidence            9999999999999999999999999998753 44444432     3345555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.2e-06  Score=91.52  Aligned_cols=268  Identities=14%  Similarity=0.116  Sum_probs=168.7

Q ss_pred             HHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChH
Q 003710          310 GYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALK  389 (801)
Q Consensus       310 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~  389 (801)
                      -+...+++.+.++++....+..++.++.  +..-|..+...|+..+-..+-..+++. .+....+|-++.-.|.-.|+..
T Consensus       253 ~~y~~c~f~~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  253 RLYYGCRFKECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHcChHHHHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence            3344455555555555554432222222  222233444444443333333333332 3445667777777777788999


Q ss_pred             HHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710          390 MTEKLFGSMIEKN---LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLIT  465 (801)
Q Consensus       390 ~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~  465 (801)
                      +|++.|.+...-|   ...|-.....|+-.|..++|+..+...-+.  -|. ..-+.-+---|.+.++++.|.+.|.++.
T Consensus       330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~  407 (611)
T KOG1173|consen  330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL  407 (611)
T ss_pred             HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999988764333   357989999999999999999988776442  111 1112223335677899999999998877


Q ss_pred             HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHH
Q 003710          466 KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK--GIKP----NESTFVSLLSS  539 (801)
Q Consensus       466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a  539 (801)
                      ... +.|+.+.+-+.-+                      ....+.+.+|..+|+..+..  .+.+    -..+++.|..+
T Consensus       408 ai~-P~Dplv~~Elgvv----------------------ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  408 AIA-PSDPLVLHELGVV----------------------AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             hcC-CCcchhhhhhhhe----------------------eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            543 4445554444333                      33445566668888776621  0111    23467888888


Q ss_pred             HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHH
Q 003710          540 CSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTA  607 (801)
Q Consensus       540 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~  607 (801)
                      |.+.+++++|+..|+....  -..-+..+|+++.-.|...|+++.|.+.|.+... +|+..+-..+++.
T Consensus       465 ~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  465 YRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            9999999999999988764  2233488888888888888999998888887654 6777666666664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.92  E-value=2.8e-05  Score=82.93  Aligned_cols=459  Identities=14%  Similarity=0.092  Sum_probs=233.1

Q ss_pred             CCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHH
Q 003710          147 LLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFF  223 (801)
Q Consensus       147 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~  223 (801)
                      .+.+..+..+.+.+++ +......+....--.+...|+-++|......-.   .++.++|..+--.+-...++++|+..|
T Consensus        20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            3445555555555555 222122222222222345577777777665543   346788998888888888999999999


Q ss_pred             HHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcc
Q 003710          224 KEMQNCGLRYDRF-SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIV  302 (801)
Q Consensus       224 ~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~  302 (801)
                      +.....  .||.. .+.-+----++.++++...               .+.+.++                 +.......
T Consensus        99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~---------------~tr~~LL-----------------ql~~~~ra  144 (700)
T KOG1156|consen   99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYL---------------ETRNQLL-----------------QLRPSQRA  144 (700)
T ss_pred             HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH---------------HHHHHHH-----------------HhhhhhHH
Confidence            887663  34332 1111111111122222111               1111111                 11223456


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH------HHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710          303 AWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP------SCTKLGALLEGKSIHGYAIRKGFLPNVALET  376 (801)
Q Consensus       303 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~------~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  376 (801)
                      .|..+.-++.-.|++..|..++++..+.....|+...+.....      ...+.|.++.+.+.+...... +......--
T Consensus       145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e  223 (700)
T KOG1156|consen  145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence            7888888888888888888888888766333566665543322      334556666666655443322 122233334


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCC--CHHHHHHHH-HHHHHcCCHHHHH-HHHHHHhCC---CCCCCHhhHHHHHHHHH
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEK--NLVSWNAMI-AAYVRNGQNREAM-ELFQDLWSE---PLKPDAMTFASILPAYA  449 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~l~~~m~~~---g~~pd~~t~~~ll~a~~  449 (801)
                      .-.+.+.+.+++++|..++..+..+  |.+-|.... .++.+-.+.-+++ .+|....+.   .-.|-....+ ++   .
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl---~  299 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VL---N  299 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-Hh---C
Confidence            4566778888999999888887544  444444433 3443333444444 555555432   1111111111 11   1


Q ss_pred             hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710          450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN  529 (801)
Q Consensus       450 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  529 (801)
                      ...-.+....++....+.|+++   ++..+...|-.-...+      ....++..|...-.........+.-  .--.|.
T Consensus       300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~------~le~Lvt~y~~~L~~~~~f~~~D~~--~~E~Pt  368 (700)
T KOG1156|consen  300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA------FLEKLVTSYQHSLSGTGMFNFLDDG--KQEPPT  368 (700)
T ss_pred             cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH------HHHHHHHHHHhhcccccCCCccccc--ccCCch
Confidence            1222233344455555666554   2333333332111000      0000111111000000000000000  001344


Q ss_pred             HH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHH
Q 003710          530 ES--TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGAL  604 (801)
Q Consensus       530 ~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~l  604 (801)
                      ..  |+..+...+-+.|+++.|..+.+...   +-.|+ ++.|..=..++..+|.+++|..++++...  .+|..+-.--
T Consensus       369 tllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc  445 (700)
T KOG1156|consen  369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC  445 (700)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence            33  34455566777788888888877665   55676 66676777777888888888888877653  3444333334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccCCCCc-------hhHH--HHHHHHHHcCCchHHHHHHHHHH
Q 003710          605 LTASRKNNDIVSAEFAARHVLSSAQDNT-------GCYV--LLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~--~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      .....+.++.++|.+++.+.-+-+.+-.       -.|.  -=+.+|.++|+|.+|.+=|..+.
T Consensus       446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            4445566777777777766654332100       0122  23567888888887777665553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.91  E-value=1.4e-07  Score=94.07  Aligned_cols=162  Identities=15%  Similarity=0.156  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 003710          495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCI  572 (801)
Q Consensus       495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l  572 (801)
                      ...+..+...|...|++++|++.+++..+.  .|+ ...+..+...+...|++++|.+.++...+.   .|+ ...+..+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~  105 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHH
Confidence            456777888899999999999999999874  354 557778888999999999999999988753   343 6778889


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCc
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPSAP----TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRW  648 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~  648 (801)
                      ...+...|++++|.+.+++....+    ....|..+...+...|+.+.|...++++++..|++...+..++.+|...|++
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence            999999999999999999876432    3456777788889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHC
Q 003710          649 EDVEQIKAIMEKE  661 (801)
Q Consensus       649 ~~a~~~~~~m~~~  661 (801)
                      ++|...+++..+.
T Consensus       186 ~~A~~~~~~~~~~  198 (234)
T TIGR02521       186 KDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=0.00027  Score=78.83  Aligned_cols=564  Identities=14%  Similarity=0.156  Sum_probs=292.7

Q ss_pred             HHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChh
Q 003710           75 LQELVSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLS  151 (801)
Q Consensus        75 ~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  151 (801)
                      .+.+...|++++|-++-...|+   ++..+-+.+=..=+..|.+.--+..|..+...| +.|..----+.+.-...|+.+
T Consensus       367 FneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rkq  445 (1666)
T KOG0985|consen  367 FNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQ  445 (1666)
T ss_pred             HHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHH
Confidence            3455567778887777777765   466666666555566777777888888888777 444432222333333334333


Q ss_pred             HHHHHHHH-----HHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCC-----------CCcccHHHHHHHHHcCCC
Q 003710          152 EGEKVHGS-----LFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV-----------RDTVSWNSMIGGYCSVGD  215 (801)
Q Consensus       152 ~a~~~~~~-----~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~  215 (801)
                      .....+.+     -.+.|=-..++--+.-++.|.|.+-...+...|.+...           --+--|-.+|+...+ -.
T Consensus       446 LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~s  524 (1666)
T KOG0985|consen  446 LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SS  524 (1666)
T ss_pred             HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cC
Confidence            32222211     11222111111112234444444444444444443321           012235566666666 56


Q ss_pred             hhhHHHHHHHHHhC-CCCCChhhHHH--------------HHHHHhccCChHHH---HHHHHHHHHhCCCC-ch------
Q 003710          216 GVSSLVFFKEMQNC-GLRYDRFSLIS--------------ALGAISIEGCLKIG---KEIHCQVIKSGLEM-DV------  270 (801)
Q Consensus       216 ~~~A~~l~~~m~~~-g~~p~~~t~~~--------------ll~a~~~~~~~~~a---~~l~~~~~~~g~~~-~~------  270 (801)
                      ++.+.++...|.+. +...|......              +|.++ +....+++   .++++.-...+... |.      
T Consensus       525 PD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~m  603 (1666)
T KOG0985|consen  525 PDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDM  603 (1666)
T ss_pred             hhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHHHHHHhccc
Confidence            77777777776552 22222221111              11111 11222221   12222222222110 11      


Q ss_pred             ---HHHHHHHHHHhcCCChHHHHHHHhhcCC--CCcccHHH----HHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH
Q 003710          271 ---MVQTSLVDMYGKCGVVDYAERLFNMIFP--RNIVAWNA----MVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITII  341 (801)
Q Consensus       271 ---~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~  341 (801)
                         +-.-.+.+.+.|.|-...|.+.+..+.+  +.++.-+.    .+-.|...-.++++++.++.|... ++.-|..+..
T Consensus       604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~-NirqNlQi~V  682 (1666)
T KOG0985|consen  604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA-NIRQNLQIVV  682 (1666)
T ss_pred             cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHH
Confidence               1133455677788888888888877633  22221111    234455566788999999999888 7877777766


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC----------
Q 003710          342 NLLPSCTKLGALLEGKSIHGYAIR-----------KGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE----------  400 (801)
Q Consensus       342 ~ll~~~~~~g~~~~a~~~~~~~~~-----------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----------  400 (801)
                      .+-.-|+..-..+...++|+....           .++.-|..+.--.|.+-++.|.+.+.+++.++-.-          
T Consensus       683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL  762 (1666)
T KOG0985|consen  683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL  762 (1666)
T ss_pred             HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence            666555555444445555544432           13456677777889999999999998888765410          


Q ss_pred             ---------------------CCHHHH------HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-------------
Q 003710          401 ---------------------KNLVSW------NAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT-------------  440 (801)
Q Consensus       401 ---------------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------------  440 (801)
                                           .|.+.|      .-.|..|.+.-++.+.-.+...++.-  .-+...             
T Consensus       763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~  840 (1666)
T KOG0985|consen  763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFP  840 (1666)
T ss_pred             HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCC
Confidence                                 022221      11344555443333333333222221  111111             


Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc---------------------------
Q 003710          441 FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------------------------  493 (801)
Q Consensus       441 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---------------------------  493 (801)
                      ..-|..-+.+.+++..-...++..+..| ..|..++|+|...|....+-.+-.                           
T Consensus       841 ~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va  919 (1666)
T KOG0985|consen  841 VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA  919 (1666)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence            1223334445556666666677777777 457888888877766554433221                           


Q ss_pred             -------------------------------hHHHH--------------------------------HHHHHHHHHcCC
Q 003710          494 -------------------------------DVVSW--------------------------------NVIIMAYAIHGL  510 (801)
Q Consensus       494 -------------------------------d~~~~--------------------------------~~li~~~~~~g~  510 (801)
                                                     |...|                                ..-+.++...+-
T Consensus       920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL  999 (1666)
T KOG0985|consen  920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL  999 (1666)
T ss_pred             ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence                                           11122                                223344444444


Q ss_pred             HHHHHHHHHHHHHCCCC-CCHHHHHHH----------------------------HHHHhccCCHHHHHHHHHHhHHhcC
Q 003710          511 GKISIQLFSEMREKGIK-PNESTFVSL----------------------------LSSCSISGMVDEGWNYFDSMRKDYG  561 (801)
Q Consensus       511 ~~~A~~l~~~m~~~g~~-p~~~t~~~l----------------------------l~a~~~~g~~~~a~~~~~~m~~~~~  561 (801)
                      +.+-++++++..-..-. ........|                            ...+...+.+++|..+|+...    
T Consensus      1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~---- 1075 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD---- 1075 (1666)
T ss_pred             cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc----
Confidence            55555555544321100 000000000                            011222334444444444221    


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710          562 IVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNM  641 (801)
Q Consensus       562 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  641 (801)
                        .+......||   -.-+.++.|.++-++..   .+.+|..|..+-...|.+.+|.+-+=+     .+|++.|.-.+++
T Consensus      1076 --~n~~A~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1076 --MNVSAIQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDV 1142 (1666)
T ss_pred             --ccHHHHHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHH
Confidence              1222222222   13345555555555543   456899999998888888888776543     5788999999999


Q ss_pred             HHHcCCchHHHHHHHHHHHCC
Q 003710          642 YAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       642 y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ..+.|+|++-.+++...+++.
T Consensus      1143 a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred             HHhcCcHHHHHHHHHHHHHhh
Confidence            999999999999887766653

>PRK12370 invasion protein regulator; Provisional

Probab=98.88  E-value=2.8e-07  Score=104.18  Aligned_cols=244  Identities=13%  Similarity=0.064  Sum_probs=163.4

Q ss_pred             ChHHHHHHHhcCCCC---CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcC
Q 003710          387 ALKMTEKLFGSMIEK---NLVSWNAMIAAYV---------RNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIAT  453 (801)
Q Consensus       387 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~  453 (801)
                      ..++|...|++..+.   +...|..+..+|.         ..+++++|...+++..+.  .|+ ...+..+-..+...|+
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccC
Confidence            345666666665432   2334444444333         224478888888888764  453 4555556666777888


Q ss_pred             hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-H
Q 003710          454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-T  532 (801)
Q Consensus       454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t  532 (801)
                      +++|...++.+++.+  |+                     +...|..+...+...|++++|+..+++..+  +.|+.. .
T Consensus       354 ~~~A~~~~~~Al~l~--P~---------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~  408 (553)
T PRK12370        354 YIVGSLLFKQANLLS--PI---------------------SADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAA  408 (553)
T ss_pred             HHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhh
Confidence            888888888888764  33                     223455566677777888888999999988  456643 3


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcc-hHHHHHHHHH
Q 003710          533 FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTAR-IWGALLTASR  609 (801)
Q Consensus       533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~~~~  609 (801)
                      +..++..+...|++++|...++.+.+.  ..|+ ...+..+..+|...|+.++|.+.++++.. .|+.. .++.|...+.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            334444566789999999999988653  2354 55678888999999999999999988653 34433 3444555556


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ..|  +.+...++.+++..-..+..+..+..+|+-.|+-+.+..+ +++.+.|
T Consensus       487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            666  4777777777764333232333477888888998888777 7776654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=5.3e-06  Score=88.59  Aligned_cols=420  Identities=17%  Similarity=0.164  Sum_probs=185.4

Q ss_pred             hcCCChhHHHHHHHHHH-------HhC-CCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCCh
Q 003710          145 AGLLYLSEGEKVHGSLF-------KSG-LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDG  216 (801)
Q Consensus       145 ~~~~~~~~a~~~~~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~  216 (801)
                      +..|++.+++.+|+...       +.| -..+-+-..+++.++.  ..+.+|..+|-+-.  +   -..-|..|....+|
T Consensus       501 aai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkw  573 (1636)
T KOG3616|consen  501 AAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKW  573 (1636)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhH
Confidence            34455666666665443       112 1223333444444443  35677777774421  1   12345556666667


Q ss_pred             hhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhh-
Q 003710          217 VSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNM-  295 (801)
Q Consensus       217 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~-  295 (801)
                      ++|+.+-+..   |.+.-...-.+-++++...|+-+.|-++-         .+..-.-+.|..|.|.|....|.+.-.. 
T Consensus       574 de~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~  641 (1636)
T KOG3616|consen  574 DEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALND  641 (1636)
T ss_pred             HHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCH
Confidence            7776664332   22211222234445555555554443331         1111223456778888877777665422 


Q ss_pred             -cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 003710          296 -IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVAL  374 (801)
Q Consensus       296 -m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  374 (801)
                       ....|......+..++.+...+++|-++|+++..          +...+..+-+...+.+|.++-...    ++..++.
T Consensus       642 ~~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~fkkgdaf~kaielarfa----fp~evv~  707 (1636)
T KOG3616|consen  642 EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECFKKGDAFGKAIELARFA----FPEEVVK  707 (1636)
T ss_pred             HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhh
Confidence             1223444444455556666666666666665531          111222222222233333332211    1111111


Q ss_pred             -HHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC
Q 003710          375 -ETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT  453 (801)
Q Consensus       375 -~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~  453 (801)
                       -...-+-+...|+++.|..-|-+...     .---|.+-....++.+|+.+++.++....  -..-|..+..-|+..|+
T Consensus       708 lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~d  780 (1636)
T KOG3616|consen  708 LEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGD  780 (1636)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchh
Confidence             11122223344555555444422110     01123334445566666666666554322  22234445556666666


Q ss_pred             hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003710          454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF  533 (801)
Q Consensus       454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  533 (801)
                      ++.|.++|-+.-         .++--|+||.+.|++++|                      .++-.+..  |-......|
T Consensus       781 fe~ae~lf~e~~---------~~~dai~my~k~~kw~da----------------------~kla~e~~--~~e~t~~~y  827 (1636)
T KOG3616|consen  781 FEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA----------------------FKLAEECH--GPEATISLY  827 (1636)
T ss_pred             HHHHHHHHHhcc---------hhHHHHHHHhccccHHHH----------------------HHHHHHhc--CchhHHHHH
Confidence            666666554321         223345555555555554                      55443331  212222233


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 003710          534 VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNND  613 (801)
Q Consensus       534 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~  613 (801)
                      .+-..-.-..|++.+|.+++-.+.     .|+.     -|.+|-+.|..++.+++.++---..-..+-..+..-+-..|+
T Consensus       828 iakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~  897 (1636)
T KOG3616|consen  828 IAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD  897 (1636)
T ss_pred             HHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC
Confidence            333334445555555555543321     2331     244555555555555555543211112233334444444555


Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710          614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK  655 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~  655 (801)
                      +..|+.-+-++        +-+-.-.|+|...|.|++|-++-
T Consensus       898 lkaae~~flea--------~d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  898 LKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             hhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence            55554433221        22334455555555555555444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=4e-05  Score=80.86  Aligned_cols=261  Identities=13%  Similarity=0.117  Sum_probs=147.8

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHH---HHHHhccCChHH--HHHHHHHH-----------HHhCCCC
Q 003710          307 MVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINL---LPSCTKLGALLE--GKSIHGYA-----------IRKGFLP  370 (801)
Q Consensus       307 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l---l~~~~~~g~~~~--a~~~~~~~-----------~~~g~~~  370 (801)
                      |...+-..|+-++|..+|....+.  -.+|.......   |.+.....++-.  ....++..           ....-..
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~  307 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ  307 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344566779999999988888775  33444222211   122222222111  11111110           0000011


Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHH
Q 003710          371 NVALETALIDMYAGSGALKMTEKLFGSMIEKN-LVSWNAMIAAYV--RNGQNREAMELFQDLWSEPLKPDA--MTFASIL  445 (801)
Q Consensus       371 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll  445 (801)
                      ...--+.|+.+|.  +..+.++++-...+..- ...+.+++....  +...+.+|.+++...-+.  .|+.  +.....+
T Consensus       308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~a  383 (652)
T KOG2376|consen  308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRA  383 (652)
T ss_pred             HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHH
Confidence            2223345555554  56677777777776543 334444444332  223577888888887654  3433  3444455


Q ss_pred             HHHHhhcChhhHHHHHH--------HHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710          446 PAYAEIATLSDSMQIHS--------LITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL  517 (801)
Q Consensus       446 ~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l  517 (801)
                      ......|+++.|.+++.        .+.+.+..|.  +..+++.+|.+.++-+.|.++               .++|+..
T Consensus       384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~v---------------l~~Ai~~  446 (652)
T KOG2376|consen  384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAV---------------LDSAIKW  446 (652)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHH---------------HHHHHHH
Confidence            66678999999999999        5555555444  456788888888877776321               2333444


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 003710          518 FSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA  595 (801)
Q Consensus       518 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~  595 (801)
                      |+.-...  .+. ..++.-+..--.+.|+-++|..+++++.+.  ..++.....++|.+|++. +.+.|..+-..++..
T Consensus       447 ~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~  520 (652)
T KOG2376|consen  447 WRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL  520 (652)
T ss_pred             HHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence            4332211  111 112222233334569999999999999862  345688899999999876 478888888877643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.84  E-value=0.00013  Score=78.46  Aligned_cols=287  Identities=14%  Similarity=0.099  Sum_probs=128.5

Q ss_pred             HHHHHHHcCCChHHHHHHHhhC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCCh
Q 003710           73 RALQELVSSGSMESACYLFEKM--SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYL  150 (801)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  150 (801)
                      +.|+.|.+.|.+..|.+.-..-  ...|......+..++.+..-++.|=++|+++..         +...+..+.+-..+
T Consensus       620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf  690 (1636)
T KOG3616|consen  620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF  690 (1636)
T ss_pred             HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence            6677888888887777654332  123444455555666666666777777776642         22233333333333


Q ss_pred             hHHHHHHHHHHHhCCCCchhhH-hHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC
Q 003710          151 SEGEKVHGSLFKSGLNSDVYVC-NSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC  229 (801)
Q Consensus       151 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  229 (801)
                      .+|.++-....    +..++.. ..--.-+...|+++.|..-|-+..     ..---|.+......|.+|+.+++.++..
T Consensus       691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq  761 (1636)
T KOG3616|consen  691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ  761 (1636)
T ss_pred             HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence            34443322211    1111110 011111223344444444432211     0111233344455555555555555443


Q ss_pred             CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCC--CcccHHHH
Q 003710          230 GLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR--NIVAWNAM  307 (801)
Q Consensus       230 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~--~~~~~~~l  307 (801)
                      ...  .--|..+..-|+..|+++.|+++|-+.         ..++-.|++|.+.|.+++|.++-++...|  .+++|-+-
T Consensus       762 k~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak  830 (1636)
T KOG3616|consen  762 KTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK  830 (1636)
T ss_pred             ccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence            211  122344445555555555555555332         12344455566666666555555554333  22333333


Q ss_pred             HHHHHhCCChhHHHHHHHHHHh---------CC-----------CCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710          308 VGGYVVNAHFLESFSCLRKMLE---------DD-----------NLNPDC--ITIINLLPSCTKLGALLEGKSIHGYAIR  365 (801)
Q Consensus       308 i~~~~~~g~~~~A~~l~~~m~~---------~~-----------g~~pd~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~  365 (801)
                      ..-+-+.|++.+|.++|-....         ..           ...||.  .|-..+-.-+-..|++..|..-|-..  
T Consensus       831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--  908 (1636)
T KOG3616|consen  831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--  908 (1636)
T ss_pred             HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--
Confidence            3334444444444443322210         00           001111  12233333444455555555444322  


Q ss_pred             hCCCCchhHHHHHHHHHHccCChHHHHHHHhc
Q 003710          366 KGFLPNVALETALIDMYAGSGALKMTEKLFGS  397 (801)
Q Consensus       366 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~  397 (801)
                             .-+.+-++||-.++.+++|.++-+.
T Consensus       909 -------~d~kaavnmyk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  909 -------GDFKAAVNMYKASELWEDAYRIAKT  933 (1636)
T ss_pred             -------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence                   1245566677777777777666543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=5.6e-05  Score=74.52  Aligned_cols=204  Identities=14%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhCCCCCCCHhh-HHHHHHHH
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNG-------QNREAMELFQDLWSEPLKPDAMT-FASILPAY  448 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~  448 (801)
                      .|+-.|.+.+++.+|..+.+++....+.-|-.-...++..|       ...-|.+.|+-.-..+..-|... -.++.+++
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            46667889999999999998886555444432222233333       23445666655544444444322 11223333


Q ss_pred             HhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003710          449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP  528 (801)
Q Consensus       449 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  528 (801)
                      .-..++++..-.++.+...-...|...+                       .+..+++..|++.+|.++|-+.....+ -
T Consensus       370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-----------------------N~AQAk~atgny~eaEelf~~is~~~i-k  425 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-----------------------NLAQAKLATGNYVEAEELFIRISGPEI-K  425 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchhhh-----------------------HHHHHHHHhcChHHHHHHHhhhcChhh-h
Confidence            3344455555554444433222332222                       256778888899999999976544332 4


Q ss_pred             CHHHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHH
Q 003710          529 NESTFVSLL-SSCSISGMVDEGWNYFDSMRKDYGIVPGIE-HYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALL  605 (801)
Q Consensus       529 ~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll  605 (801)
                      |..+|.+++ .++.+.+.++.|+.++-.+..    ..+.. ..-.+.+-+.+++.+--|.+.|+.+.. .|++..|.---
T Consensus       426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKR  501 (557)
T KOG3785|consen  426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKR  501 (557)
T ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCcc
Confidence            667777655 567889999999988665421    12222 233445667788888777777776654 68888897444


Q ss_pred             HHH
Q 003710          606 TAS  608 (801)
Q Consensus       606 ~~~  608 (801)
                      ++|
T Consensus       502 GAC  504 (557)
T KOG3785|consen  502 GAC  504 (557)
T ss_pred             chH
Confidence            444

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.82  E-value=4.9e-07  Score=93.41  Aligned_cols=217  Identities=12%  Similarity=0.067  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHhCCC-CCCC--HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc
Q 003710          417 GQNREAMELFQDLWSEP-LKPD--AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR  493 (801)
Q Consensus       417 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  493 (801)
                      +..+.++.-+.+++... ..|+  ...|...-..+...|+.+.|...+...++..  |+                     
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~---------------------   96 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PD---------------------   96 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CC---------------------
Confidence            34555666666665432 2222  1234444445566677777777766666543  22                     


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI  572 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l  572 (801)
                      +...|+.+...|...|++++|++.|++..+  +.|+ ..++..+..++...|++++|.+.|+...+   ..|+.......
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~  171 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALW  171 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence            234566666677777777777888888887  5565 45677777788888999999988888764   35653322222


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCchhHHHHHHHHHHc
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVL-------SSAQDNTGCYVLLSNMYAEA  645 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~  645 (801)
                      ...+...++.++|.+.+++....-+...|.. .......|+...+ ..++.+.       ++.|.....|..|+.+|.+.
T Consensus       172 ~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~  249 (296)
T PRK11189        172 LYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL  249 (296)
T ss_pred             HHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence            3344566788899888865432212223332 1222334554333 2333333       44566677899999999999


Q ss_pred             CCchHHHHHHHHHHHCCC
Q 003710          646 GRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       646 g~~~~a~~~~~~m~~~g~  663 (801)
                      |++++|...|++..+.++
T Consensus       250 g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        250 GDLDEAAALFKLALANNV  267 (296)
T ss_pred             CCHHHHHHHHHHHHHhCC
Confidence            999999999998876543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=5e-06  Score=85.36  Aligned_cols=153  Identities=10%  Similarity=0.082  Sum_probs=124.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710          505 YAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD  583 (801)
Q Consensus       505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~  583 (801)
                      +.-.|+.-.|.+-|+..+...-.++.. |.-+...|....+.++.+..|+...   .+.|. ..+|-.=..++.-.++++
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence            455688888999999998854333332 7677778999999999999999887   45665 777777778888889999


Q ss_pred             HHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          584 QAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       584 eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +|..=|++... .| +...+.-+.-+..+.+.++.+...|+...+..|.-+..|...+.++..++++++|.+.++...+.
T Consensus       412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            99999998764 34 34555556666677889999999999999999999999999999999999999999999988763

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=2.6e-07  Score=89.64  Aligned_cols=233  Identities=16%  Similarity=0.169  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHH-HHHHHH
Q 003710          373 ALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFAS-ILPAYA  449 (801)
Q Consensus       373 ~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~  449 (801)
                      .--+.+..+|.+.|.+.+|++.|+.-.  .+-+.||-.|-..|.+-.+++.|+.+|.+-++  ..|-.+||.. ....+.
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence            334678889999999999999998763  45677888889999999999999999998876  4677777654 345566


Q ss_pred             hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710          450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN  529 (801)
Q Consensus       450 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  529 (801)
                      ..++.+.+.++++...+.. +.+                      +.+.-.+..+|.-.++++-|++.|+++++.|+. +
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~n----------------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-s  357 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PIN----------------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-S  357 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-Ccc----------------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-C
Confidence            6788888888888887653 111                      222233445666677788888888888888854 5


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 003710          530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASR  609 (801)
Q Consensus       530 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~  609 (801)
                      ...|..+.-+|.-.+.+|-++.-|.+.... .-.|+                              .-..+|-.|.....
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~------------------------------~aaDvWYNlg~vaV  406 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG------------------------------QAADVWYNLGFVAV  406 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc------------------------------hhhhhhhccceeEE
Confidence            667777777888888888887777766532 11111                              12345666666667


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ..||+..|.+-++..+..+|++...++.|+-+-.+.|+.++|+.+++..+...
T Consensus       407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            78999999999999999999999999999999999999999999999887753

>PRK12370 invasion protein regulator; Provisional

Probab=98.79  E-value=5.2e-07  Score=101.96  Aligned_cols=213  Identities=12%  Similarity=0.097  Sum_probs=156.8

Q ss_pred             CCHHHHHHHHHHHhCCCCCCCHh-hHHHHHHHHH---------hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710          417 GQNREAMELFQDLWSEPLKPDAM-TFASILPAYA---------EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC  486 (801)
Q Consensus       417 g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~  486 (801)
                      +..++|+++|++..+  ..|+.. .+..+-.++.         ..++.++|...++.+++..  |+              
T Consensus       275 ~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~--------------  336 (553)
T PRK12370        275 YSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HN--------------  336 (553)
T ss_pred             HHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CC--------------
Confidence            346799999999986  466643 3333333322         2234678888888877654  32              


Q ss_pred             CCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 003710          487 GDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG  565 (801)
Q Consensus       487 g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~  565 (801)
                             +...|..+...+...|++++|+..|++..+  +.|+. ..+..+...+...|++++|...++...+   +.|+
T Consensus       337 -------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~  404 (553)
T PRK12370        337 -------NPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPT  404 (553)
T ss_pred             -------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCC
Confidence                   334556666677778888888999999998  45764 4677788899999999999999999874   4666


Q ss_pred             -hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710          566 -IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNM  641 (801)
Q Consensus       566 -~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  641 (801)
                       ...+..+...+...|++++|.+.+++...  .|+. ..+..+..++...|+.++|+..++++....|.+......+...
T Consensus       405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~  484 (553)
T PRK12370        405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE  484 (553)
T ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence             33334455567778999999999988753  2543 4466667777899999999999999988888888888888888


Q ss_pred             HHHcCCchHHHHHHHHHHHC
Q 003710          642 YAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       642 y~~~g~~~~a~~~~~~m~~~  661 (801)
                      |...|  ++|...++.+.+.
T Consensus       485 ~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        485 YCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HhccH--HHHHHHHHHHHHH
Confidence            88888  5788877776653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.72  E-value=3e-06  Score=91.44  Aligned_cols=230  Identities=18%  Similarity=0.222  Sum_probs=150.4

Q ss_pred             hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCchH-HHHHHHHHHhcCCChHHHHHHHhhcCC-------C--
Q 003710          236 FSLISALGAISIEGCLKIGKEIHCQVIKS-----GL-EMDVM-VQTSLVDMYGKCGVVDYAERLFNMIFP-------R--  299 (801)
Q Consensus       236 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~lf~~m~~-------~--  299 (801)
                      .|+..+...|...|+++.|.+++++.++.     |. .|.+. ..+.+...|...+++++|..+|+++..       +  
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555666777777777777777776654     21 12222 223355677777888777777776621       1  


Q ss_pred             --CcccHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CChh-hHHHHHHHHhccCChHHHHHHHHHHHHh---CC
Q 003710          300 --NIVAWNAMVGGYVVNAHFLESFSCLRKMLED----DNLN-PDCI-TIINLLPSCTKLGALLEGKSIHGYAIRK---GF  368 (801)
Q Consensus       300 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~-pd~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~  368 (801)
                        -..+++.|-..|.+.|++++|..++++..+-    .|.. |+.. -++.+...|...+.+++|..++....+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence              1245666677778888877776666554321    1222 2222 3556667778888888888888766552   12


Q ss_pred             CC----chhHHHHHHHHHHccCChHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC-
Q 003710          369 LP----NVALETALIDMYAGSGALKMTEKLFGSMIEK-----------NLVSWNAMIAAYVRNGQNREAMELFQDLWSE-  432 (801)
Q Consensus       369 ~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-  432 (801)
                      .+    -..+++.|...|.+.|++++|+++|++....           .....|-|...|.+.+++++|.++|.+-..- 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            22    2457888899999999999999998876321           1245677788888888888888888765321 


Q ss_pred             -CCCCC----HhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710          433 -PLKPD----AMTFASILPAYAEIATLSDSMQIHSLIT  465 (801)
Q Consensus       433 -g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~  465 (801)
                       -..|+    ..+|..|...|...|+++.|.++.+.+.
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             12233    3567778888888888888888888776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=0.00038  Score=76.02  Aligned_cols=367  Identities=13%  Similarity=0.052  Sum_probs=199.6

Q ss_pred             HHHHcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHC-C-------C-CCCcccHHHHHHHHh
Q 003710           76 QELVSSGSMESACYLFEKMS-YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE-G-------F-KADYFTYPFVIKACA  145 (801)
Q Consensus        76 ~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-------~-~p~~~~~~~ll~~~~  145 (801)
                      +.|..-|+.+.|.+..+-+. ..   .|..|.+-|++.++.+-|.-.+-.|... |       . .|+ .+=..+.-...
T Consensus       736 SfyvtiG~MD~AfksI~~IkS~~---vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi  811 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIKSDS---VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI  811 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHhhhH---HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence            45667788888877665542 11   6777777777777777776666655421 1       1 122 22222222334


Q ss_pred             cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCC-CcccHHHHHHHHHcCCChhhHHHHHH
Q 003710          146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR-DTVSWNSMIGGYCSVGDGVSSLVFFK  224 (801)
Q Consensus       146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~  224 (801)
                      ..|.+++|+.++.+-.+..         .|=..|-..|.+++|.++-+.-..- =..||.-...-+-..++.+.|++.|+
T Consensus       812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            6778888888887766542         3445566778888887775432100 11234444444444556666665555


Q ss_pred             HH----------HhCC---------CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCC
Q 003710          225 EM----------QNCG---------LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGV  285 (801)
Q Consensus       225 ~m----------~~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~  285 (801)
                      +-          +...         -.-|...|.---.-+-..|+.+.|..++.....         |-+++...|-.|+
T Consensus       883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK  953 (1416)
T ss_pred             hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence            42          1111         112333344344445567888888888776543         3456666677788


Q ss_pred             hHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCC-------------
Q 003710          286 VDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGA-------------  352 (801)
Q Consensus       286 ~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~-------------  352 (801)
                      .++|.++-++-  .|....-.+..-|-..|++.+|+.+|.+.+          +|...|+.|-..+.             
T Consensus       954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen  954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred             chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence            88887776653  455556667777777788888887777654          34444444433221             


Q ss_pred             --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--------------CCCHHHHHHHHHHHHHc
Q 003710          353 --LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--------------EKNLVSWNAMIAAYVRN  416 (801)
Q Consensus       353 --~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------------~~~~~~~~~li~~~~~~  416 (801)
                        +-.|-..|+   +.|..     ..-.+..|-|.|.+.+|.++--+-.              ..|+...+--..-|+.+
T Consensus      1022 ~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred             hhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence              111222222   11211     1223456777777777766532221              22444444444555566


Q ss_pred             CCHHHHHHHHHHHhC----------CC----------------CCCCHhh----HHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710          417 GQNREAMELFQDLWS----------EP----------------LKPDAMT----FASILPAYAEIATLSDSMQIHSLITK  466 (801)
Q Consensus       417 g~~~~A~~l~~~m~~----------~g----------------~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~  466 (801)
                      .++++|..++-..++          +|                -.|+..+    +..+-..|.+.|++..|-+-|.++-.
T Consensus      1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence            666666655533321          11                2233333    33444566777777766655544321


Q ss_pred             hCCCCchHHHHHHHHHHHhcCCccccc
Q 003710          467 LGLVSNIYISNSIVYMYAKCGDLQTAR  493 (801)
Q Consensus       467 ~g~~~~~~~~~~li~~y~~~g~~~~A~  493 (801)
                         +      -.-+.++.|.|+.++-.
T Consensus      1174 ---K------l~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1174 ---K------LSAMRALLKSGDTQKIR 1191 (1416)
T ss_pred             ---H------HHHHHHHHhcCCcceEE
Confidence               1      12456677788877765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=0.0023  Score=78.03  Aligned_cols=442  Identities=11%  Similarity=0.021  Sum_probs=250.5

Q ss_pred             hHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCC--C-C----hhhHHHHHHHHhcc----CChHHH
Q 003710          186 ECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLR--Y-D----RFSLISALGAISIE----GCLKIG  254 (801)
Q Consensus       186 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~a~~~~----~~~~~a  254 (801)
                      ++.++++..+.--+.++ -.+......   .+.+.++++++...|+-  | +    .+.|..++..+...    .+.+..
T Consensus       265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~  340 (903)
T PRK04841        265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL  340 (903)
T ss_pred             HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence            44455554444333333 333444433   34456777777777751  1 1    25566666655432    123333


Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003710          255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVA--WNAMVGGYVVNAHFLESFSCLRKMLEDDN  332 (801)
Q Consensus       255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g  332 (801)
                      .++|..               ....|...|++.+|.+........+...  ...........|+++.+...+..+... .
T Consensus       341 ~~lh~r---------------aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~  404 (903)
T PRK04841        341 PELHRA---------------AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-V  404 (903)
T ss_pred             HHHHHH---------------HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-H
Confidence            334333               2334555666666666555544332211  111122344567777777776665321 1


Q ss_pred             CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHccCChHHHHHHHhcCC----C
Q 003710          333 LNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF------LPN--VALETALIDMYAGSGALKMTEKLFGSMI----E  400 (801)
Q Consensus       333 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~  400 (801)
                      ...+..........+...|+++++...+....+.--      .+.  ......+...+...|++++|...+++..    .
T Consensus       405 ~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~  484 (903)
T PRK04841        405 LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL  484 (903)
T ss_pred             HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            111222222333444567888888888877654311      111  1222233445667899999988887642    2


Q ss_pred             CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC---CCC--HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCC
Q 003710          401 KNL----VSWNAMIAAYVRNGQNREAMELFQDLWSEPL---KPD--AMTFASILPAYAEIATLSDSMQIHSLITKLGLVS  471 (801)
Q Consensus       401 ~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~  471 (801)
                      .+.    ..++.+...+...|++++|...+.+.....-   .+.  ..++..+-..+...|+++.|...++......-. 
T Consensus       485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~-  563 (903)
T PRK04841        485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE-  563 (903)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
Confidence            222    3445566677788999999999988764211   111  223444555677889999999988876642100 


Q ss_pred             chHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHH
Q 003710          472 NIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK--GIKPN--ESTFVSLLSSCSISGMVD  547 (801)
Q Consensus       472 ~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~  547 (801)
                                    .|..........+..+...+...|++++|...+++....  ...+.  ...+..+.......|+.+
T Consensus       564 --------------~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~  629 (903)
T PRK04841        564 --------------QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD  629 (903)
T ss_pred             --------------hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence                          000000001122334455566678888888888876552  11222  223444556777899999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCcc----hHHHHHHHHHhcCCHHH
Q 003710          548 EGWNYFDSMRKDYGIVPGIEHY-----GCIIDLLGRIGNLDQAKRFIEEMPSA--PTAR----IWGALLTASRKNNDIVS  616 (801)
Q Consensus       548 ~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~----~~~~ll~~~~~~g~~~~  616 (801)
                      +|.+.++..............+     ......+...|+.++|.+++......  ....    .+..+..++...|+.+.
T Consensus       630 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  709 (903)
T PRK04841        630 NARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE  709 (903)
T ss_pred             HHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence            9999988875431111111111     11224456689999999998776532  1111    13456667788899999


Q ss_pred             HHHHHHHHHccCC------CCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          617 AEFAARHVLSSAQ------DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       617 a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      |...++++++...      ....++..++.+|...|+.++|...+.+..+..
T Consensus       710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999998886421      123467788999999999999999998887643

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.61  E-value=0.00027  Score=79.02  Aligned_cols=160  Identities=12%  Similarity=-0.002  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREK-GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID  574 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~  574 (801)
                      ..|.+.....-..+.++.|.++..+.+.- ..+-|..+|+.+..   ..|++.-+..-|+......+..|...-=..+..
T Consensus       968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~---~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen  968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP---DAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---hhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence            44555555555555666666555553321 01233444443211   122223333333333222233332211112222


Q ss_pred             HH--HhcCCHHHHHHHHHhCCC----CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710          575 LL--GRIGNLDQAKRFIEEMPS----APTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR  647 (801)
Q Consensus       575 ~~--~~~g~~~eA~~~~~~m~~----~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~  647 (801)
                      .+  .-.|+++++.+.|++...    +.+. +....++-.....+..+.|....-+...+.|.+......|.-+|.-..+
T Consensus      1045 ~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1045 DLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhh
Confidence            22  225677777777776643    2332 3333344444556666777777777777777777666666666654444


Q ss_pred             chHHHHHHHHH
Q 003710          648 WEDVEQIKAIM  658 (801)
Q Consensus       648 ~~~a~~~~~~m  658 (801)
                      -....-+.+++
T Consensus      1125 a~~ssaileel 1135 (1238)
T KOG1127|consen 1125 AHGSSAILEEL 1135 (1238)
T ss_pred             hhhhHHHHHHH
Confidence            33333333333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=3.4e-06  Score=82.05  Aligned_cols=220  Identities=12%  Similarity=0.017  Sum_probs=104.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcC
Q 003710          104 VVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLG  183 (801)
Q Consensus       104 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  183 (801)
                      -|-++|.+.|.+.+|.+.|+.-.+.  .|-+.||..|-++|.+......|..++..-++.- +-|+....-+...+-..+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence            3555555666666666555554443  3444455555555655555555555555444331 223333333444444555


Q ss_pred             CchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 003710          184 CVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQ  260 (801)
Q Consensus       184 ~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~  260 (801)
                      +.++|.++++...   .-|+.+...+..+|.-.++++-|+..|+++...|+. +...|..+--+|.-.++++.+.--|..
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            5555555555543   124444444555555555566666666665555543 333444444444445555555554444


Q ss_pred             HHHhCCCCc--hHHHHHHHHHHhcCCChHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 003710          261 VIKSGLEMD--VMVQTSLVDMYGKCGVVDYAERLFNMIFPR---NIVAWNAMVGGYVVNAHFLESFSCLRKM  327 (801)
Q Consensus       261 ~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~lf~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m  327 (801)
                      .+..--.|+  ..+|-.|-......||+..|.+-|+-....   +..++|.+.-.-.+.|+.++|..++...
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            443322222  222333333344445555555555443221   2233444444444444444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.60  E-value=2.3e-05  Score=80.99  Aligned_cols=200  Identities=9%  Similarity=-0.047  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003710          404 VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYM  482 (801)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~  482 (801)
                      ..|..+...|...|+.++|...|++..+.  .| +...|..+-..+...|+++.|.+.++..++..  |+          
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~----------  130 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PT----------  130 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----------
Confidence            45666777778888888888888887764  34 35667777777888888888888888877643  33          


Q ss_pred             HHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 003710          483 YAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI  562 (801)
Q Consensus       483 y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~  562 (801)
                                 +..+|..+...+...|++++|++.|++..+  ..|+..........+...++.++|...|+....  ..
T Consensus       131 -----------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~  195 (296)
T PRK11189        131 -----------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL  195 (296)
T ss_pred             -----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence                       223466666777778888888999999887  456654222222234456789999999976543  23


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          563 VPGIEHYGCIIDLLGRIGNLDQAKRFIEEM-PSA-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       563 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      .|+...+ .++..+......+++.+.+.+- ...     .....|..|...+...|+.++|+..++++++++|.+..
T Consensus       196 ~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        196 DKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             CccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            3432222 3333333222223334333322 111     12457888999999999999999999999999986544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.58  E-value=4.8e-05  Score=83.26  Aligned_cols=284  Identities=15%  Similarity=0.126  Sum_probs=167.3

Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHc-----C
Q 003710          346 SCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRN-----G  417 (801)
Q Consensus       346 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~-----g  417 (801)
                      .+...|+.++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.++|+   .-|..+..+....     .
T Consensus        13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~   91 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE   91 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence            345667777777776543332 233345556666777777777777777777654322   2333444443221     2


Q ss_pred             CHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710          418 QNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT-LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV  496 (801)
Q Consensus       418 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~  496 (801)
                      ..+...++|+++...  -|.......+.-.+..... -..+......+.+.|+++   +++.|-..|.            
T Consensus        92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~------------  154 (517)
T PF12569_consen   92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYK------------  154 (517)
T ss_pred             cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHc------------
Confidence            455666666666543  2433333222111111111 123334444445555433   3333433443            


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREK----G----------IKPNES--TFVSLLSSCSISGMVDEGWNYFDSMRKDY  560 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~  560 (801)
                                ...+..-..+++......    |          -.|...  ++.-+...+.+.|++++|+++.+...   
T Consensus       155 ----------d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---  221 (517)
T PF12569_consen  155 ----------DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---  221 (517)
T ss_pred             ----------ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---
Confidence                      222222223343333321    1          123332  34555667788999999999999877   


Q ss_pred             CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCC----
Q 003710          561 GIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSA--QDN----  631 (801)
Q Consensus       561 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~----  631 (801)
                      ...|+ ++.|..-...|-+.|++++|.+.++....  .-|-.+-+-....+.+.|+.++|+.++....+-+  |..    
T Consensus       222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~  301 (517)
T PF12569_consen  222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND  301 (517)
T ss_pred             hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence            45788 88999999999999999999999988764  2444455556667788999999999988876654  221    


Q ss_pred             ---chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          632 ---TGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       632 ---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                         .....--+.+|.+.|++..|.+.+..+.+
T Consensus       302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               11234668899999999999887766644

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=4.8e-05  Score=82.74  Aligned_cols=396  Identities=13%  Similarity=0.093  Sum_probs=213.2

Q ss_pred             CchhhHhHHHHH--HHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC-C--------CCCCh
Q 003710          167 SDVYVCNSLIVM--YMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC-G--------LRYDR  235 (801)
Q Consensus       167 ~~~~~~~~li~~--y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~  235 (801)
                      -|..+-.++++.  |..-|+.|.|.+-.+.+.  ....|..|.+.+++..+.+-|.-.+-.|... |        -.|+ 
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence            355566666653  667788888877766654  3456888888888888877777777666432 1        1222 


Q ss_pred             hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhC
Q 003710          236 FSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVN  314 (801)
Q Consensus       236 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~  314 (801)
                      .+=.-+.-.....|.+++|+.++.+..+..         .|=..|-..|.+++|.++-+.=.. .=-.+|.....-+-..
T Consensus       801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence            222222222346788888888888877653         234556777888888887654211 0112444445555556


Q ss_pred             CChhHHHHHHHHHHh----------C-C-------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710          315 AHFLESFSCLRKMLE----------D-D-------NLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET  376 (801)
Q Consensus       315 g~~~~A~~l~~~m~~----------~-~-------g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  376 (801)
                      ++.+.|++.|++-..          + .       .-.-|...|.-.-.-.-..|+++.|..++..+.+         |-
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f  942 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF  942 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence            777777777765411          1 0       0011222233333333445666666666554433         34


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD  456 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~  456 (801)
                      +++...|-.|+.++|-++-++-  .|....-.+...|-..|++.+|..+|.+.+         +|...|+.|-..+.-++
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence            4555556667777777766543  344455567778888889999999888764         45555555544332221


Q ss_pred             HHHH------------HHHHHHhCCCCchHHHHHHHHHHHhcCCccccc-----------------------hHHHHHHH
Q 003710          457 SMQI------------HSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-----------------------DVVSWNVI  501 (801)
Q Consensus       457 a~~i------------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-----------------------d~~~~~~l  501 (801)
                      -..+            -.+..+.|..     ..--+..|-|.|.+..|.                       |....+--
T Consensus      1012 L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence            1110            0111111111     112344566666666664                       33333444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHH
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG----IEHYGCIIDLLG  577 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~  577 (801)
                      ..-+..+.++++|..++-..++         |...+..|...| +.-..++-+.|.-...-.|+    ......+.+.+.
T Consensus      1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence            4445555666666655544433         333343343322 22222333333221112232    345667778888


Q ss_pred             hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 003710          578 RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV  615 (801)
Q Consensus       578 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~  615 (801)
                      ++|.+.-|-+=|.+...+      ...+.++.+.||.+
T Consensus      1157 qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred             hccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence            888888887777665432      12344555566554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.9e-05  Score=81.13  Aligned_cols=224  Identities=12%  Similarity=0.060  Sum_probs=139.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710          408 AMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC  486 (801)
Q Consensus       408 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~  486 (801)
                      .+....-+..++..|++-+.......   ...||. ..-.++...|........-...++.|... ..-|+-+...++  
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~--  302 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALA--  302 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHH--
Confidence            34445555566666666666665532   333333 33344556666655555555554444221 112222222222  


Q ss_pred             CCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 003710          487 GDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI  566 (801)
Q Consensus       487 g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~  566 (801)
                                   -+..+|...++++.|+..|++....-..||..+         +....+++....+...   -+.|..
T Consensus       303 -------------r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~  357 (539)
T KOG0548|consen  303 -------------RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEK  357 (539)
T ss_pred             -------------HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhH
Confidence                         244567777888999999998776555554322         2223344444433322   344542


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710          567 -EHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       567 -~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                       .-.-.=...+.+.|++.+|.+.+.++.. .| |...|.....++.+.|++..|..-++..++++|+....|..-+-++.
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence             1122226667788899999988888754 34 56777777778888899999998899999999988888888888888


Q ss_pred             HcCCchHHHHHHHHHHHCC
Q 003710          644 EAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       644 ~~g~~~~a~~~~~~m~~~g  662 (801)
                      ...+|++|.+.+..-.+.+
T Consensus       438 ~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            8889999998887766543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.54  E-value=0.00034  Score=76.69  Aligned_cols=262  Identities=14%  Similarity=0.122  Sum_probs=135.0

Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh
Q 003710          375 ETALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI  451 (801)
Q Consensus       375 ~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (801)
                      +.-|...|-..|+.++|.+..++..+.   .+..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence            344566677777777777777766433   23456666677777777777777777776532 22444444455666677


Q ss_pred             cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 003710          452 ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSW--NVIIMAYAIHGLGKISIQLFSEMREK--GI-  526 (801)
Q Consensus       452 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~-  526 (801)
                      |+.++|.++.....+.+..|-    +-|.+|-            ..|  ..-..+|.+.|++..|++.|....+.  .+ 
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~----~~L~~mQ------------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPL----SNLNDMQ------------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcc----cCHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            777777777777766553221    1111111            123  33456777888888777666554331  01 


Q ss_pred             --CCC----------HHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCCCh-----------HHHHHHHHHH
Q 003710          527 --KPN----------ESTFVSLLSSCSISGM-------VDEGWNYFDSMRKDYGIVPGI-----------EHYGCIIDLL  576 (801)
Q Consensus       527 --~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~  576 (801)
                        +-|          ..+|..+|.-.-+...       ...|.+++-.+..........           .--..+-.-.
T Consensus       340 ~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~  419 (517)
T PF12569_consen  340 EDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKA  419 (517)
T ss_pred             cccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHH
Confidence              122          2233333332221111       122333333332210000000           0000000000


Q ss_pred             ---HhcCCHHHHHHHHHh-----------C----CCCCCcchHH-HHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHH
Q 003710          577 ---GRIGNLDQAKRFIEE-----------M----PSAPTARIWG-ALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVL  637 (801)
Q Consensus       577 ---~~~g~~~eA~~~~~~-----------m----~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  637 (801)
                         .+...-+++...-.+           .    +.+.|..... .|+   ....=++.|.+.++-+.+..|++..+|.+
T Consensus       420 kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~l  496 (517)
T PF12569_consen  420 KKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLL  496 (517)
T ss_pred             HHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHH
Confidence               011111111111100           0    1112222222 122   12234678999999999999999999999


Q ss_pred             HHHHHHHcCCchHHHHHHH
Q 003710          638 LSNMYAEAGRWEDVEQIKA  656 (801)
Q Consensus       638 l~~~y~~~g~~~~a~~~~~  656 (801)
                      --.+|.+.|++--|.+.+.
T Consensus       497 aFeVy~Rk~K~LLaLqaL~  515 (517)
T PF12569_consen  497 AFEVYLRKGKYLLALQALK  515 (517)
T ss_pred             HhHHHHhcCcHHHHHHHHH
Confidence            9999999999988887654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.54  E-value=0.00018  Score=80.43  Aligned_cols=552  Identities=13%  Similarity=-0.008  Sum_probs=264.1

Q ss_pred             hHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 003710           84 MESACYLFEKMSYLDT---YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSL  160 (801)
Q Consensus        84 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  160 (801)
                      ...|...|-+..+.|+   ..|..|-..|...-+...|.+.|.+..+.. .-|......+...+++..+++.|..+.  +
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~--l  550 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC--L  550 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH--H
Confidence            4444444444333332   256666666666556667777777766543 234445566667777777777776662  1


Q ss_pred             HHhCCCC---chhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC
Q 003710          161 FKSGLNS---DVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD  234 (801)
Q Consensus       161 ~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  234 (801)
                      ......|   -..-|-.+--.|.+.++...|..-|+...   ..|...|..+..+|...|++..|+++|.+...  +.|+
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~  628 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL  628 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence            1111111   11112222233555666666666666543   34778899999999999999999999987754  4454


Q ss_pred             hhhHHHHHHH--HhccCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--------
Q 003710          235 RFSLISALGA--ISIEGCLKIGKEIHCQVIKSG------LEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--------  298 (801)
Q Consensus       235 ~~t~~~ll~a--~~~~~~~~~a~~l~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--------  298 (801)
                      . +|.....+  -+..|.++++...++.++..-      ...-..++-.+...+.-.|-...|...|+.-.+        
T Consensus       629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3 33333222  356788888888777766431      111111222222222222333334444433211        


Q ss_pred             ---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCCh---H---HHHHHHHHHHHhCCC
Q 003710          299 ---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGAL---L---EGKSIHGYAIRKGFL  369 (801)
Q Consensus       299 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~---~---~a~~~~~~~~~~g~~  369 (801)
                         .|...|-.+          ..|..+|.... - . .|+......+..-.-+.+..   +   .|.+.+..-.  .+.
T Consensus       708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~  772 (1238)
T KOG1127|consen  708 SLQSDRLQWIVA----------SDACYIFSQEE-P-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLA  772 (1238)
T ss_pred             hhhhhHHHHHHH----------hHHHHHHHHhc-c-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHh
Confidence               122222222          12223333222 0 1 22222222222212222222   1   1111111001  111


Q ss_pred             CchhHHHHHHHHHHc----cC----ChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH
Q 003710          370 PNVALETALIDMYAG----SG----ALKMTEKLFGSMI---EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA  438 (801)
Q Consensus       370 ~~~~~~~~Li~~y~k----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~  438 (801)
                      .+...|..|..-|.+    +|    +...|...+...+   ..+..+||.|-.. ...|.+.-|...|-+-... .+-..
T Consensus       773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~  850 (1238)
T KOG1127|consen  773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCH  850 (1238)
T ss_pred             hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccch
Confidence            112222222222221    11    2234444444332   3355666665443 3334444444444433322 12233


Q ss_pred             hhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----------------CccccchHHHHHHH
Q 003710          439 MTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCG-----------------DLQTARDVVSWNVI  501 (801)
Q Consensus       439 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-----------------~~~~A~d~~~~~~l  501 (801)
                      .+|..+--.|....+++.|.+.+...+... +.+..-+-.........|                 .-.+|.+..-|-.-
T Consensus       851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~  929 (1238)
T KOG1127|consen  851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA  929 (1238)
T ss_pred             hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence            444444444445555555555555544322 111111111100011111                 11122233334444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-
Q 003710          502 IMAYAIHGLGKISIQLFSEMRE---------KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC-  571 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-  571 (801)
                      ..-..++|+.++-+...++.-.         .|.+-+...|.......-+.+.++.|.+...+...-...+-+...|+. 
T Consensus       930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen  930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred             HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            4444556665554444333221         133344567888888888888888887777665433223344555653 


Q ss_pred             ---HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH---HHHHHHHHc
Q 003710          572 ---IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV---LLSNMYAEA  645 (801)
Q Consensus       572 ---li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~y~~~  645 (801)
                         ...++...|.++.|..-+...+.+.+..+..+-+.. .-.|+++.+...+++++.+...+...-+   .++.....+
T Consensus      1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred             hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence               345566678888888777766655555444444433 4468999999999999987655444223   333444566


Q ss_pred             CCchHHHHHHHHHHH
Q 003710          646 GRWEDVEQIKAIMEK  660 (801)
Q Consensus       646 g~~~~a~~~~~~m~~  660 (801)
                      +.-+.|....-+...
T Consensus      1089 ~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             ccchHHHHHHHHHHH
Confidence            667777766555444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=0.00083  Score=68.04  Aligned_cols=156  Identities=12%  Similarity=0.045  Sum_probs=86.4

Q ss_pred             HHHccCChHHHHHHHhcCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHH-HHHHh-hcChh
Q 003710          381 MYAGSGALKMTEKLFGSMI--E-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASIL-PAYAE-IATLS  455 (801)
Q Consensus       381 ~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~~~~~  455 (801)
                      .+...|+.++|.--|+...  . -+..+|.-++.+|...|.+.||.-+-++..+. +.-+..+.+.+- ..|.. ...-+
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE  421 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE  421 (564)
T ss_pred             HHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence            3445566777666666442  2 25667777777777777777776665554332 222333333321 12221 22245


Q ss_pred             hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003710          456 DSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS  535 (801)
Q Consensus       456 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  535 (801)
                      +|..+++...+.  .|+-                     +-.-+.+..-+...|+.++++.+++.-+.  ..||....+.
T Consensus       422 KAKkf~ek~L~~--~P~Y---------------------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~  476 (564)
T KOG1174|consen  422 KAKKFAEKSLKI--NPIY---------------------TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNH  476 (564)
T ss_pred             HHHHHHHhhhcc--CCcc---------------------HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHH
Confidence            566666555443  2221                     01123333444455556666777777666  5677777777


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG  565 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~  565 (801)
                      |...+...+.+++|.+.|....   .+.|+
T Consensus       477 Lgd~~~A~Ne~Q~am~~y~~AL---r~dP~  503 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKAMEYYYKAL---RQDPK  503 (564)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH---hcCcc
Confidence            7777777777777777777655   34554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.52  E-value=0.0011  Score=71.14  Aligned_cols=427  Identities=12%  Similarity=0.065  Sum_probs=255.4

Q ss_pred             cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHH
Q 003710          212 SVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAER  291 (801)
Q Consensus       212 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  291 (801)
                      ..+++...+.+.+..... ..-...|....--.+...|+.++|.......++..+ .+.+.|..+.-.+-...++++|.+
T Consensus        19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence            345666666666666552 222223333222234556777777777766665432 233445555555555678888888


Q ss_pred             HHhhc---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003710          292 LFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTKLGALLEGKSIHGYAIRKG  367 (801)
Q Consensus       292 lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g  367 (801)
                      -|...   ...|...|..+---=.+.++++.....-....+.   .|. ...|.....+.--.|+...|..+.++..+..
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88765   2345566666655556667777666666665543   343 3456666667777889999999998888765


Q ss_pred             C-CCchhHHHHHH------HHHHccCChHHHHHHHhcCCCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC
Q 003710          368 F-LPNVALETALI------DMYAGSGALKMTEKLFGSMIEK--NLV-SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD  437 (801)
Q Consensus       368 ~-~~~~~~~~~Li------~~y~k~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd  437 (801)
                      . .|+...+.-..      ....+.|..++|.+.+......  |-. .-.+....+.+.+++++|..++..++..  .||
T Consensus       174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd  251 (700)
T KOG1156|consen  174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD  251 (700)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence            3 45544443222      2235678888888777654332  222 2334556778889999999999999874  588


Q ss_pred             HhhHHHHHHHHH-hhcCh-hhHHHHHHHHHHhC---CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHc-CCH
Q 003710          438 AMTFASILPAYA-EIATL-SDSMQIHSLITKLG---LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIH-GLG  511 (801)
Q Consensus       438 ~~t~~~ll~a~~-~~~~~-~~a~~i~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~-g~~  511 (801)
                      ..-|.-.+..+. +..+. +....++....+.-   ..|-...-+                           .... ...
T Consensus       252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls---------------------------vl~~eel~  304 (700)
T KOG1156|consen  252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS---------------------------VLNGEELK  304 (700)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH---------------------------HhCcchhH
Confidence            887777666554 23332 22224554444321   111100000                           0011 112


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHhHHh--------cCC-CCC--hHHHHHHHHHH
Q 003710          512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVD----EGWNYFDSMRKD--------YGI-VPG--IEHYGCIIDLL  576 (801)
Q Consensus       512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~m~~~--------~~~-~p~--~~~~~~li~~~  576 (801)
                      +..-+++..+.+.|+.|--..+.+|..   .-...+    -+..+...+...        ... .|.  ..++-.++..|
T Consensus       305 ~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~  381 (700)
T KOG1156|consen  305 EIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY  381 (700)
T ss_pred             HHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence            223466777788887664333333322   211111    122222222111        001 344  44566788899


Q ss_pred             HhcCCHHHHHHHHHhCCCC-CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710          577 GRIGNLDQAKRFIEEMPSA-PTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~m~~~-p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      -+.|+++.|..+++..... |+. ..|..=...+...|+.+.|-..++.+.+++-.|...-.--++-..++.+.++|.++
T Consensus       382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~  461 (700)
T KOG1156|consen  382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV  461 (700)
T ss_pred             HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence            9999999999999987642 443 22333346678889999999999999999988776655667777889999999999


Q ss_pred             HHHHHHCCCcc-----CCcccEEEEC
Q 003710          655 KAIMEKEGLKK-----TTGCSMFEKN  675 (801)
Q Consensus       655 ~~~m~~~g~~~-----~~~~s~~~~~  675 (801)
                      .......|..-     +..|.|..++
T Consensus       462 ~skFTr~~~~~~~~L~~mqcmWf~~E  487 (700)
T KOG1156|consen  462 LSKFTREGFGAVNNLAEMQCMWFQLE  487 (700)
T ss_pred             HHHhhhcccchhhhHHHhhhHHHhHh
Confidence            98887766421     3457786553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.50  E-value=0.00014  Score=71.63  Aligned_cols=315  Identities=12%  Similarity=0.085  Sum_probs=165.4

Q ss_pred             HHHHhcCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH-HHHHHHhccCC
Q 003710          277 VDMYGKCGVVDYAERLFNMIFPRNIVAWNAMV---GGYVVNAHFLESFSCLRKMLEDDNLNPDCITII-NLLPSCTKLGA  352 (801)
Q Consensus       277 i~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~~~~~~g~  352 (801)
                      -..+...|++.+|+.-|....+-|...|-++.   ..|...|+..-|+.-|.+..+   .+||...-. .--..+.+.|.
T Consensus        45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhccc
Confidence            34445567777888888777777777776664   357777777777777777763   466643211 11122334445


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q 003710          353 LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE  432 (801)
Q Consensus       353 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  432 (801)
                      ++.|..-|+.+++..-..+     ....++.+.-..++-+.            ....+..+..+|+...|++....+++ 
T Consensus       122 le~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE-  183 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE-  183 (504)
T ss_pred             HHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh-
Confidence            5555544444444321100     00111111111111111            11223334445666666666666554 


Q ss_pred             CCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCH
Q 003710          433 PLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLG  511 (801)
Q Consensus       433 g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~  511 (801)
                       +.|= ...+..=-.+|...|.+..|..=+..+.+..-.                       +....--+-..+...|+.
T Consensus       184 -i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-----------------------nTe~~ykis~L~Y~vgd~  239 (504)
T KOG0624|consen  184 -IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-----------------------NTEGHYKISQLLYTVGDA  239 (504)
T ss_pred             -cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-----------------------chHHHHHHHHHHHhhhhH
Confidence             3332 222222233444445554444433333332211                       122233333445555666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710          512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~  591 (801)
                      +.++...++.++  +.||......      .-..+.+..+.++.|.+                 ..+.++|.++++-.++
T Consensus       240 ~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~  294 (504)
T KOG0624|consen  240 ENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEK  294 (504)
T ss_pred             HHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHH
Confidence            666777777666  5676543211      11122333333333332                 2344555555555544


Q ss_pred             C-CCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          592 M-PSAPTA-----RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       592 m-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      . ..+|..     ..+..+-..++..|++.+|++...++++++|+|..++..-+.+|.-...+++|..-++...+.
T Consensus       295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            3 223431     223334445567788889999999999999999888888888998888888888888877663

>PF12854 PPR_1: PPR repeat

Probab=98.50  E-value=1e-07  Score=61.60  Aligned_cols=33  Identities=45%  Similarity=0.575  Sum_probs=25.9

Q ss_pred             CCCCchhhHhHHHHHHHhcCCchHHHHhhccCC
Q 003710          164 GLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP  196 (801)
Q Consensus       164 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~  196 (801)
                      |+.||..+||+||++||+.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677788888888888888888888888887774

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.50  E-value=2.1e-05  Score=78.76  Aligned_cols=166  Identities=14%  Similarity=-0.007  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEH  568 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~  568 (801)
                      ....+..++..+...|++++|+..|++....  .|+.    .++..+..++...|++++|...++.+.+.+.-.|. ...
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            5567788888899999999999999999873  4543    35677788999999999999999999865433333 224


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHhCCC-CCCc-chHH-----------------HHHHHHHhcCCHHHHHHHH
Q 003710          569 YGCIIDLLGRI--------GNLDQAKRFIEEMPS-APTA-RIWG-----------------ALLTASRKNNDIVSAEFAA  621 (801)
Q Consensus       569 ~~~li~~~~~~--------g~~~eA~~~~~~m~~-~p~~-~~~~-----------------~ll~~~~~~g~~~~a~~~~  621 (801)
                      +..+...+...        |+.++|.+.++++.. .|+. ..+.                 .+...+...|+.+.|...+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            55566666654        789999999998754 3543 2332                 2334567789999999999


Q ss_pred             HHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          622 RHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       622 ~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +++++..|++   +..+..++.+|.+.|++++|..+++.+..+
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999987764   468899999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.47  E-value=8.7e-06  Score=82.90  Aligned_cols=247  Identities=11%  Similarity=0.025  Sum_probs=146.1

Q ss_pred             HHHHccCChHHHHHHHh--cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh
Q 003710          380 DMYAGSGALKMTEKLFG--SMIEK-NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD  456 (801)
Q Consensus       380 ~~y~k~g~~~~A~~~f~--~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~  456 (801)
                      +-+.-.|.+..+..-.+  ..... +.....-+.++|...|+++.++.   +..... .|....+..+...+....+-+.
T Consensus         9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence            34455788888875444  11111 23345556788888898776553   333332 5665555444443433233333


Q ss_pred             HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003710          457 SMQIHSLITKLGLV-SNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS  535 (801)
Q Consensus       457 a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  535 (801)
                      +..-+......... .+..+.-...                      ..+...|++++|++++++-      .+......
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A----------------------~i~~~~~~~~~AL~~l~~~------~~lE~~al  136 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAA----------------------TILFHEGDYEEALKLLHKG------GSLELLAL  136 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHH----------------------HHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence            33333222211111 1211111112                      2234456666667776542      34455566


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHh
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGI---EHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRK  610 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~  610 (801)
                      .+..+.+.++++.|.+.++.|.+   +..|.   ....+.+..+.-.+.+.+|..+|+++..+  +++.+.+.+..+...
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~  213 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ  213 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            67788888888888888888863   34442   22333344444445688899999887654  556667777778888


Q ss_pred             cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHHHHC
Q 003710          611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRW-EDVEQIKAIMEKE  661 (801)
Q Consensus       611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~  661 (801)
                      .|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++..++..
T Consensus       214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            99999999999999999999999988899888999998 6677888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.47  E-value=3.2e-05  Score=72.23  Aligned_cols=200  Identities=12%  Similarity=0.073  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003710          406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA  484 (801)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~  484 (801)
                      ...+.-+|.+.|++..|..-+++.++.  .|+ ..++..+-..|.+.|..+.|.+-|+...+.. +.+.           
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~G-----------  103 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNG-----------  103 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCcc-----------
Confidence            334556677777777777777777654  343 3455566666667777777777777766543 1122           


Q ss_pred             hcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 003710          485 KCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIV  563 (801)
Q Consensus       485 ~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~  563 (801)
                                 ...|....-+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+   ..
T Consensus       104 -----------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~d  169 (250)
T COG3063         104 -----------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LD  169 (250)
T ss_pred             -----------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hC
Confidence                       2334455566777788888999999887543333 35788888888889999999999998764   45


Q ss_pred             CC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          564 PG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       564 p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      |+ ....-.|.+...+.|++-+|..+++....  .++..+.-..+..-...||.+.+-+.-.++.+..|....
T Consensus       170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            66 77788899999999999999999887654  355555555566677789988888888888888887554

>PF12854 PPR_1: PPR repeat

Probab=98.40  E-value=4.7e-07  Score=58.48  Aligned_cols=32  Identities=31%  Similarity=0.575  Sum_probs=19.7

Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710          561 GIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM  592 (801)
Q Consensus       561 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m  592 (801)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55566666666666666666666666666655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.37  E-value=8.4e-06  Score=73.98  Aligned_cols=122  Identities=8%  Similarity=-0.061  Sum_probs=97.4

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710          515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP  593 (801)
Q Consensus       515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~  593 (801)
                      ..+|++.++  +.|+.  +..+..++...|++++|...|+...   .+.|+ ...|..+..++.+.|++++|...+++..
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            356666666  45664  4556777888999999999999887   45565 7888889999999999999999998875


Q ss_pred             C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710          594 S--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       594 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      .  ..+...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4  3456778888888889999999999999999999999888877766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.36  E-value=8.6e-06  Score=85.74  Aligned_cols=226  Identities=13%  Similarity=0.119  Sum_probs=153.0

Q ss_pred             HHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh-hHHHHHHHHHhhcChhhH
Q 003710          382 YAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM-TFASILPAYAEIATLSDS  457 (801)
Q Consensus       382 y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a  457 (801)
                      +.+.|++.+|.-.|+..+.+   +...|--|...-+.+++-..|+..+++.++  +.|+.. .+..|--.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence            45677788888888776544   456788888888888888888888888765  455432 222232333333333333


Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710          458 MQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL  537 (801)
Q Consensus       458 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  537 (801)
                      ...+..-++...+-                                             .+  ....+  ++..+=..  
T Consensus       373 l~~L~~Wi~~~p~y---------------------------------------------~~--l~~a~--~~~~~~~~--  401 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKY---------------------------------------------VH--LVSAG--ENEDFENT--  401 (579)
T ss_pred             HHHHHHHHHhCccc---------------------------------------------hh--ccccC--ccccccCC--
Confidence            33333332221100                                             00  00000  00000000  


Q ss_pred             HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHH
Q 003710          538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIV  615 (801)
Q Consensus       538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~  615 (801)
                      ..+.....+....++|-.+....+..+|..++.+|.-+|--.|.+++|.+.|+.... +| |...|+-|...++...+.+
T Consensus       402 ~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~  481 (579)
T KOG1125|consen  402 KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE  481 (579)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH
Confidence            122223334455566666666667678889999999999999999999999998754 55 5688999999999999999


Q ss_pred             HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +|..+|.+++++.|.-..+..-|+-.|...|.++||.+.|=....
T Consensus       482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999888888999999999999999998866544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=0.00036  Score=73.30  Aligned_cols=101  Identities=19%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             HHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHhcCCChh
Q 003710           76 QELVSSGSMESACYLFEKM---SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKAD-YFTYPFVIKACAGLLYLS  151 (801)
Q Consensus        76 ~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~  151 (801)
                      ++.+..|+++.|...|-+.   ..+|-+-|..-..+|+..|++++|++=-.+-++.  .|+ .-.|+-.-.++...|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            3456778999999888764   3457778888888899999998888766665543  444 346778888888888888


Q ss_pred             HHHHHHHHHHHhCCCCchhhHhHHHHHH
Q 003710          152 EGEKVHGSLFKSGLNSDVYVCNSLIVMY  179 (801)
Q Consensus       152 ~a~~~~~~~~~~g~~~~~~~~~~li~~y  179 (801)
                      +|...|..-++.. ..+...++-|..++
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence            8888887776654 34556667777766

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=5e-05  Score=77.40  Aligned_cols=251  Identities=10%  Similarity=0.092  Sum_probs=157.7

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003710          347 CTKLGALLEGKSIHGYAIRKGFLP--NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME  424 (801)
Q Consensus       347 ~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~  424 (801)
                      .--.|++..+..-.+ ..  ...+  +.....-+.++|...|+.+.+..-...-..+.......+...+...++-+.++.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HHHhhhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence            334577777665444 21  2233  344455667888889998877665555555555555444443433356667777


Q ss_pred             HHHHHhCCCCCCCHhhHHHH-HHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003710          425 LFQDLWSEPLKPDAMTFASI-LPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIM  503 (801)
Q Consensus       425 l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~  503 (801)
                      -+++.......++..++..+ -..+...|+++.|.+++...      .+..                      ..-..+.
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE----------------------~~al~Vq  139 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLE----------------------LLALAVQ  139 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHH----------------------HHHHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------Cccc----------------------HHHHHHH
Confidence            77776655544333333322 23455678888887766431      1222                      2234556


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 003710          504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRI  579 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  579 (801)
                      .|.+.++++.|.+.++.|.+  +..| .+...|..++..    .+.+.+|..+|+++.+.  ..+++...+.+..+....
T Consensus       140 i~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHh
Confidence            66777777788999999987  3444 444445554433    34799999999999764  457788999999999999


Q ss_pred             CCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCH-HHHHHHHHHHHccCCCCch
Q 003710          580 GNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDI-VSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       580 g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~  633 (801)
                      |+++||.+++++... .| ++.++..++......|+. +.+.+...++...+|+++.
T Consensus       215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            999999999988654 23 455666777777777877 7788899998888998653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=0.0013  Score=70.54  Aligned_cols=93  Identities=12%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCCH--hhHHHHHHH
Q 003710          374 LETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPL-KPDA--MTFASILPA  447 (801)
Q Consensus       374 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~a  447 (801)
                      ....+...+...|++++|...+++..+   .+...+..+...|...|++++|..++++...... .|+.  ..|..+...
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            334455566677777777777776532   2445566666777777777777777777655321 1222  123345556


Q ss_pred             HHhhcChhhHHHHHHHHHH
Q 003710          448 YAEIATLSDSMQIHSLITK  466 (801)
Q Consensus       448 ~~~~~~~~~a~~i~~~~~~  466 (801)
                      +...|+.++|..+++.+..
T Consensus       196 ~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         196 YLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhc
Confidence            6677777777777777653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.26  E-value=0.0021  Score=68.88  Aligned_cols=163  Identities=8%  Similarity=-0.039  Sum_probs=85.9

Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH---
Q 003710          301 IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIIN-LLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET---  376 (801)
Q Consensus       301 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~---  376 (801)
                      ...|..+...+...|+.+++...+.+..+.....++...... ....+...|+.+.+..+++.+.+.. +.+...+.   
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            345666666777778888877777666543122223222211 1223445677888888777776653 22333333   


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhc
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIA  452 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~  452 (801)
                      .+.......+..+.+.+.++.....   ....+..+...+...|++++|...+++..+.  .|+ ...+..+-..+...|
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence            1222222344555555555442222   1223334445666677777777777777653  333 333444455556666


Q ss_pred             ChhhHHHHHHHHHH
Q 003710          453 TLSDSMQIHSLITK  466 (801)
Q Consensus       453 ~~~~a~~i~~~~~~  466 (801)
                      ++++|...+....+
T Consensus       163 ~~~eA~~~l~~~l~  176 (355)
T cd05804         163 RFKEGIAFMESWRD  176 (355)
T ss_pred             CHHHHHHHHHhhhh
Confidence            66666666665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.26  E-value=4.6e-05  Score=73.19  Aligned_cols=147  Identities=9%  Similarity=0.059  Sum_probs=111.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG  580 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g  580 (801)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++...+   ..|+ ...|..|...|...|
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence            4567777777775444332211    11        012235666777777776654   3455 889999999999999


Q ss_pred             CHHHHHHHHHhCCC-CC-CcchHHHHHHHH-HhcCC--HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710          581 NLDQAKRFIEEMPS-AP-TARIWGALLTAS-RKNND--IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK  655 (801)
Q Consensus       581 ~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~  655 (801)
                      ++++|.+.+++... .| +...+..+..++ ...|+  .++|..+++++++.+|++..++..|+..+.+.|++++|...+
T Consensus        88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999998754 34 566777777764 56676  599999999999999999999999999999999999999999


Q ss_pred             HHHHHCCC
Q 003710          656 AIMEKEGL  663 (801)
Q Consensus       656 ~~m~~~g~  663 (801)
                      +++.+...
T Consensus       168 ~~aL~l~~  175 (198)
T PRK10370        168 QKVLDLNS  175 (198)
T ss_pred             HHHHhhCC
Confidence            99987543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.14  E-value=3.4e-06  Score=55.37  Aligned_cols=35  Identities=34%  Similarity=0.598  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE  530 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  530 (801)
                      ++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.00087  Score=64.89  Aligned_cols=203  Identities=12%  Similarity=0.083  Sum_probs=120.1

Q ss_pred             cCChHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHH
Q 003710          385 SGALKMTEKLFGSMIE-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSL  463 (801)
Q Consensus       385 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~  463 (801)
                      .+++..++.+.++.+. .+..+-+......-+.|++++|++-|+...+-+---....|+..+. ..+.++.+.|.....+
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE  203 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence            4566666777777663 4444444444445567888888888877765433333455655543 3455777778888777


Q ss_pred             HHHhCCCCchHHHH----HHHHHHHhcCCccc-cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 003710          464 ITKLGLVSNIYISN----SIVYMYAKCGDLQT-AR--DVVSWNVIIMAYAIHGLGKISIQLFSEMREK-GIKPNESTFVS  535 (801)
Q Consensus       464 ~~~~g~~~~~~~~~----~li~~y~~~g~~~~-A~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~  535 (801)
                      +++.|+...+...-    -.++.-. .|+... +.  -+..+|.-...+.+.|+++.|.+-+..|--+ .-..|++|...
T Consensus       204 IieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN  282 (459)
T KOG4340|consen  204 IIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN  282 (459)
T ss_pred             HHHhhhhcCCccCccceeccCchhc-ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence            77776653322110    0000000 000000 00  1223444455567889999998888877422 23457788665


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP  593 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~  593 (801)
                      +.-. ...|++.++.+-+.-+.   ++.|- .+++..++-.|++..-++-|.+++-+-+
T Consensus       283 ~Al~-n~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  283 QALM-NMDARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             HHHh-cccCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence            4322 22355666666655554   55665 7899999999999999999999987754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.13  E-value=2.5e-05  Score=70.84  Aligned_cols=99  Identities=11%  Similarity=-0.152  Sum_probs=88.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHH
Q 003710          562 IVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLS  639 (801)
Q Consensus       562 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  639 (801)
                      +.|+  .+..+...+...|++++|.+.++....  ..+...|..+..++...|+++.|...++++++++|+++..+..++
T Consensus        22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            4455  456688899999999999999998754  346788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCchHHHHHHHHHHHCC
Q 003710          640 NMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       640 ~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      .+|...|++++|...++...+..
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999987644

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.13  E-value=0.00016  Score=83.39  Aligned_cols=206  Identities=14%  Similarity=0.159  Sum_probs=167.2

Q ss_pred             CCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHH
Q 003710          435 KPD-AMTFASILPAYAEIATLSDSMQIHSLITKL-GLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGK  512 (801)
Q Consensus       435 ~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~  512 (801)
                      .|| ...|...+.-..+.++.+.|+++.+++.+. ++.                   ++.+-...|.++++--...|.-+
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-------------------EeeEKLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR-------------------EEEEKLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-------------------hhHHHHHHHHHHHhHHHhhCcHH
Confidence            354 445666677777888899999998887743 221                   23334567888888888889888


Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710          513 ISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       513 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~  591 (801)
                      ...++|++..+.   -|+ ..|..|+.-|.+.+..++|-++++.|.++++  -....|..+++.+.+..+-+.|.+++++
T Consensus      1515 sl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1515 SLKKVFERACQY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred             HHHHHHHHHHHh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            899999999883   244 4588999999999999999999999999877  4578999999999999999999999887


Q ss_pred             CCC-CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710          592 MPS-APT---ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK  664 (801)
Q Consensus       592 m~~-~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~  664 (801)
                      ... -|.   .....-.+..-.++||.+.|+.+++.++.-.|.-...|..++++=.+.|..+.++.+|++..+.++.
T Consensus      1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            543 233   3344445555678999999999999999999999999999999999999999999999999987763

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.12  E-value=3.8e-06  Score=55.17  Aligned_cols=35  Identities=37%  Similarity=0.673  Sum_probs=32.5

Q ss_pred             ccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCCh
Q 003710          201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDR  235 (801)
Q Consensus       201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  235 (801)
                      ++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.11  E-value=0.031  Score=62.72  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=31.5

Q ss_pred             cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCC
Q 003710          212 SVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCG  284 (801)
Q Consensus       212 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g  284 (801)
                      +.|+.++|..+++.....+.. |..|...+-..+...++.+++..+++...+.  .|+......+..+|.|.+
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~  124 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK  124 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence            445555555555444333322 4444444444444555555555555544433  233333334444444444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.11  E-value=0.00021  Score=81.33  Aligned_cols=138  Identities=11%  Similarity=0.083  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC  571 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~  571 (801)
                      ++..+-.|.....+.|+.++|.++++...+  +.||.. .+..+...+.+.+.+++|....++..   ...|+ ..+...
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence            455667777777888888888888888887  677765 46667778888888888888888776   34666 777778


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV  636 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  636 (801)
                      +..++.+.|++++|.++|++... .|+ ...|.++..++...|+.+.|...++++++...+-...|.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence            88888888888888888888763 333 567777888888888888888888888877665555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.11  E-value=0.00019  Score=77.85  Aligned_cols=221  Identities=16%  Similarity=0.165  Sum_probs=167.7

Q ss_pred             CCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHH
Q 003710          367 GFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILP  446 (801)
Q Consensus       367 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~  446 (801)
                      +++|--..-..+...+.++|-...|..+|++.     ..|...|.+|+..|+..+|.++..+-.+  -+||..-|..+..
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            34555566678889999999999999999875     5688899999999999999999998887  4788888888888


Q ss_pred             HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710          447 AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI  526 (801)
Q Consensus       447 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  526 (801)
                      ...+..-+++|.++.++.....            .              ..|+   .-...+++++++.+.|+.-.+  +
T Consensus       466 v~~d~s~yEkawElsn~~sarA------------~--------------r~~~---~~~~~~~~fs~~~~hle~sl~--~  514 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISARA------------Q--------------RSLA---LLILSNKDFSEADKHLERSLE--I  514 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHHH------------H--------------Hhhc---cccccchhHHHHHHHHHHHhh--c
Confidence            8777777888888877654220            0              0000   011225677777888887665  3


Q ss_pred             CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHH
Q 003710          527 KP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWG  602 (801)
Q Consensus       527 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~  602 (801)
                      .| -..||..+..+..+.++++.|.+.|....   ...|+ .+.|+.+..+|.+.|+..+|...+++...  ..+..+|.
T Consensus       515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             CccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            33 34578777778888888999988888876   46777 78888898899999988888888887653  24566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHccC
Q 003710          603 ALLTASRKNNDIVSAEFAARHVLSSA  628 (801)
Q Consensus       603 ~ll~~~~~~g~~~~a~~~~~~~~~~~  628 (801)
                      ...-.....|.++.|.+++.+++.+.
T Consensus       592 Nymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             chhhhhhhcccHHHHHHHHHHHHHhh
Confidence            77777788888888888888887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.10  E-value=0.0024  Score=77.88  Aligned_cols=259  Identities=14%  Similarity=0.008  Sum_probs=144.9

Q ss_pred             HHcCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchHHHHHHHHHH
Q 003710          210 YCSVGDGVSSLVFFKEMQNCGLRYDR----FSLISALGAISIEGCLKIGKEIHCQVIKS----GLE-MDVMVQTSLVDMY  280 (801)
Q Consensus       210 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~l~~~~~~~----g~~-~~~~~~~~li~~y  280 (801)
                      +...|++++|...+++..+.-...+.    .....+-..+...|+++.|...+......    |-. ....+...+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            44566666666666665442111111    12233334445566777776666665532    111 1123344455566


Q ss_pred             hcCCChHHHHHHHhhcCC-------CC----cccHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCC--hhhHHHHHHH
Q 003710          281 GKCGVVDYAERLFNMIFP-------RN----IVAWNAMVGGYVVNAHFLESFSCLRKMLEDD-NLNPD--CITIINLLPS  346 (801)
Q Consensus       281 ~~~g~~~~A~~lf~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t~~~ll~~  346 (801)
                      ...|+++.|...+++...       ++    ...+..+...+...|++++|...+.+..... ...+.  ...+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            667777777776655411       11    1123334445556677777777776654320 11122  2233344455


Q ss_pred             HhccCChHHHHHHHHHHHHhCC--CCch---h-HHHHHHHHHHccCChHHHHHHHhcCCCCCH-------HHHHHHHHHH
Q 003710          347 CTKLGALLEGKSIHGYAIRKGF--LPNV---A-LETALIDMYAGSGALKMTEKLFGSMIEKNL-------VSWNAMIAAY  413 (801)
Q Consensus       347 ~~~~g~~~~a~~~~~~~~~~g~--~~~~---~-~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~  413 (801)
                      ....|+.+.|.+.+.......-  ....   . .....+..+...|+.+.|...+.....+..       ..+..+...+
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            6677888888777777654211  1111   0 011123445668899999888876643311       1134566678


Q ss_pred             HHcCCHHHHHHHHHHHhCC----CCCCCH-hhHHHHHHHHHhhcChhhHHHHHHHHHHhC
Q 003710          414 VRNGQNREAMELFQDLWSE----PLKPDA-MTFASILPAYAEIATLSDSMQIHSLITKLG  468 (801)
Q Consensus       414 ~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g  468 (801)
                      ...|++++|..++++....    |..++. .+...+-.++...|+.++|...+....+..
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8889999999999887543    333322 345555667788999999999999988765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.0013  Score=63.82  Aligned_cols=308  Identities=9%  Similarity=0.017  Sum_probs=198.7

Q ss_pred             HHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHhcCC
Q 003710           73 RALQELVSSGSMESACYLFEKMSYL---DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFV-IKACAGLL  148 (801)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~  148 (801)
                      +.+..+.+..++.+|.+++..-.++   +....+.+.-+|....++..|-+.|+++-..  .|...-|..- .+.+-+.+
T Consensus        15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence            4555556778899999988765443   5556778888888999999999999998764  4555444322 24455667


Q ss_pred             ChhHHHHHHHHHHHhCCCCchhhHhHHHH--H--HHhcCCchHHHHhhccCC-CCCcccHHHHHHHHHcCCChhhHHHHH
Q 003710          149 YLSEGEKVHGSLFKSGLNSDVYVCNSLIV--M--YMKLGCVECAERMFDEMP-VRDTVSWNSMIGGYCSVGDGVSSLVFF  223 (801)
Q Consensus       149 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~--y~~~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~  223 (801)
                      .+..|.++...|...     ....+..+.  +  ....+++..++.+.++.+ +.+..+.+-.-....+.|++++|++-|
T Consensus        93 i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   93 IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence            788888888777532     222222222  2  235688999999999988 456666666666677999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCC----
Q 003710          224 KEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR----  299 (801)
Q Consensus       224 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~----  299 (801)
                      +...+-|---....|+..+. ..+.++...|.....++++.|+...+...-         |..-+... .+.+..+    
T Consensus       168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh  236 (459)
T KOG4340|consen  168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLH  236 (459)
T ss_pred             HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHH
Confidence            98876543333456776664 446788999999999999988643221100         00000000 0000000    


Q ss_pred             ---CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710          300 ---NIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET  376 (801)
Q Consensus       300 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  376 (801)
                         =+..+|.-...+.+.|+++.|.+-+.+|..+..-..|++|+..+.-. -..+++..+.+-+..+.... +....++.
T Consensus       237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA  314 (459)
T KOG4340|consen  237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA  314 (459)
T ss_pred             HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence               01233444455667788888888888886554556788887655322 12345566666666666653 34566777


Q ss_pred             HHHHHHHccCChHHHHHHHhcCCC
Q 003710          377 ALIDMYAGSGALKMTEKLFGSMIE  400 (801)
Q Consensus       377 ~Li~~y~k~g~~~~A~~~f~~~~~  400 (801)
                      .++-.|||..-++-|-.++.+-..
T Consensus       315 NlLllyCKNeyf~lAADvLAEn~~  338 (459)
T KOG4340|consen  315 NLLLLYCKNEYFDLAADVLAENAH  338 (459)
T ss_pred             HHHHHHhhhHHHhHHHHHHhhCcc
Confidence            788889999888888888866544

>PLN02789 farnesyltranstransferase

Probab=98.05  E-value=0.0016  Score=67.27  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=138.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-HHHHHHHHHhhc-ChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710          409 MIAAYVRNGQNREAMELFQDLWSEPLKPDAMT-FASILPAYAEIA-TLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC  486 (801)
Q Consensus       409 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~  486 (801)
                      +-..+...++.++|+.+..++++  +.|+..| |..--..+...+ .+++++..++.+++..- .+.             
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-kny-------------  106 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNY-------------  106 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cch-------------
Confidence            33445556677777777777765  3455443 222222333344 45677777777665542 222             


Q ss_pred             CCccccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 003710          487 GDLQTARDVVSWNVIIMAYAIHGL--GKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIV  563 (801)
Q Consensus       487 g~~~~A~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~  563 (801)
                               .+|+.....+.+.|+  .++++.+++++++.  .| |..+|.....++.+.|+++++++.++.+.+.   .
T Consensus       107 ---------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d  172 (320)
T PLN02789        107 ---------QIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---D  172 (320)
T ss_pred             ---------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---C
Confidence                     223333223333333  24567888888773  44 4557777777778888888888888888754   2


Q ss_pred             CC-hHHHHHHHHHHHhc---CC----HHHHHHHHHhCC-CC-CCcchHHHHHHHHHhc----CCHHHHHHHHHHHHccCC
Q 003710          564 PG-IEHYGCIIDLLGRI---GN----LDQAKRFIEEMP-SA-PTARIWGALLTASRKN----NDIVSAEFAARHVLSSAQ  629 (801)
Q Consensus       564 p~-~~~~~~li~~~~~~---g~----~~eA~~~~~~m~-~~-p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p  629 (801)
                      |+ ...|+....++.+.   |.    .+++.++..++. .. -|...|+-+...+...    ++...+...+.++++.+|
T Consensus       173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence            33 55565555555443   22    246677764443 33 4578899888888774    344668888899889999


Q ss_pred             CCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 003710          630 DNTGCYVLLSNMYAEAG------------------RWEDVEQIKAIME  659 (801)
Q Consensus       630 ~~~~~~~~l~~~y~~~g------------------~~~~a~~~~~~m~  659 (801)
                      .++..+..|+++|+...                  ..++|.++.+.+.
T Consensus       253 ~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        253 NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            99999999999998743                  2366777777774

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.05  E-value=0.00012  Score=65.31  Aligned_cols=95  Identities=11%  Similarity=0.004  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      .+..-.+...+...|++++|..+|+-...  .-+..-|-.|...|...|+++.|...+.++..++|+|+.++..++..|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            44445566677788999999988886543  3456789999999999999999999999999999999999999999999


Q ss_pred             HcCCchHHHHHHHHHHH
Q 003710          644 EAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       644 ~~g~~~~a~~~~~~m~~  660 (801)
                      ..|+.++|.+.|+....
T Consensus       115 ~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        115 ACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999988765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.03  E-value=0.001  Score=69.34  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHH
Q 003710          540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVS  616 (801)
Q Consensus       540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~  616 (801)
                      ....|.+++|+..++.+...   .|+ +......++.+.+.++.++|.+.++++.. .|+ ...|..+..++.+.|+..+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            34456666666666666542   344 55555666666777777777776666654 354 4556666666666777777


Q ss_pred             HHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710          617 AEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       617 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      |+.+++.....+|+|+..|..|+..|...|+..+|..-+.++
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            776666666667777777776666666666666665555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.98  E-value=0.00063  Score=70.88  Aligned_cols=138  Identities=15%  Similarity=0.128  Sum_probs=114.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710          503 MAYAIHGLGKISIQLFSEMREKGIKPNESTFVSL-LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG  580 (801)
Q Consensus       503 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g  580 (801)
                      -.+...|..++|+..++.++.  -.||..-|..+ ...+...++.++|.+.++.+..   ..|+ ....-.+.++|.+.|
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence            455677888999999999887  46777766554 4578899999999999999984   5677 666778899999999


Q ss_pred             CHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710          581 NLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       581 ~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      +..+|..+++....  +.|+..|..|..+|...|+..++..+                 .+..|+-.|+|++|.......
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence            99999999998764  45788999999999999998877654                 455788999999999999988


Q ss_pred             HHCC
Q 003710          659 EKEG  662 (801)
Q Consensus       659 ~~~g  662 (801)
                      +++.
T Consensus       452 ~~~~  455 (484)
T COG4783         452 SQQV  455 (484)
T ss_pred             HHhc
Confidence            8764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.00043  Score=66.36  Aligned_cols=136  Identities=16%  Similarity=0.097  Sum_probs=111.2

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHH
Q 003710          526 IKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGA  603 (801)
Q Consensus       526 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~  603 (801)
                      ..|+......+-.++...|+-+.+..+......  .-..+......++....+.|++.+|...+.+...  .+|...|+.
T Consensus        62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~  139 (257)
T COG5010          62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL  139 (257)
T ss_pred             cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence            456544335666778888888888888776543  2223355666789999999999999999998754  578899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +..+|-+.|+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..++......+.
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999988776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.97  E-value=7.7e-05  Score=67.19  Aligned_cols=100  Identities=15%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHH
Q 003710          562 IVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLL  638 (801)
Q Consensus       562 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  638 (801)
                      ..|+ ......+...+...|++++|.+.++.... .| +...|..+...+...|+.+.|...++++++.+|+++..+..+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            3444 44555666677777777777777766533 23 456677777777788888888888888888888888888888


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHC
Q 003710          639 SNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       639 ~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +.+|...|++++|...++...+.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999888877664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.96  E-value=0.00021  Score=75.33  Aligned_cols=123  Identities=14%  Similarity=0.125  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHH
Q 003710          532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASR  609 (801)
Q Consensus       532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~  609 (801)
                      ...+|+..+...+++++|..+|+++.+.   .|+  ....|+..+...++..+|.+++++... .| +...+......|.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456777788889999999999999864   355  555688888889999999999988764 34 4455555556688


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      ..++.+.|..+++++.++.|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999998875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.95  E-value=0.04  Score=58.34  Aligned_cols=423  Identities=12%  Similarity=0.117  Sum_probs=253.5

Q ss_pred             CCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003710           64 IGPRNITKT-RALQELVSSGSMESACYLFEKMSY--L-DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPF  139 (801)
Q Consensus        64 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  139 (801)
                      -.|.|+..| .||+-+... ..++++..++++..  | ....|..-|+.....++++....+|.+....-  .+...|..
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l   91 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL   91 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence            347788888 666666554 99999999999853  3 45679999999999999999999999987653  33444555


Q ss_pred             HHHHHhcC-CCh----hHHHHHHHHHH-HhCCCCc-hhhHhHHHHH---------HHhcCCchHHHHhhccCCC-C----
Q 003710          140 VIKACAGL-LYL----SEGEKVHGSLF-KSGLNSD-VYVCNSLIVM---------YMKLGCVECAERMFDEMPV-R----  198 (801)
Q Consensus       140 ll~~~~~~-~~~----~~a~~~~~~~~-~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~----  198 (801)
                      -|.-..+. +..    +...+.++..+ +.|.++- -..|+.-+..         |....+++..++++.++.. |    
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            55433322 222    22334444443 4565443 2346666654         3444567778888888762 2    


Q ss_pred             -----CcccHHHHHHHH-------HcCCChhhHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHhccC
Q 003710          199 -----DTVSWNSMIGGY-------CSVGDGVSSLVFFKEMQN--CGLRYDRFS---------------LISALGAISIEG  249 (801)
Q Consensus       199 -----d~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~  249 (801)
                           |-..|..=|+-.       -+...+-.|.++++++..  .|+.-+..+               |-..|.-=-..+
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 112222111111       123345667777777643  354322222               222222111111


Q ss_pred             ------Ch--HHHHHHHHHHH-HhCCCCchHHH-HHHH----HHHhcCCChHH-------HHHHHhhcCC----CCcccH
Q 003710          250 ------CL--KIGKEIHCQVI-KSGLEMDVMVQ-TSLV----DMYGKCGVVDY-------AERLFNMIFP----RNIVAW  304 (801)
Q Consensus       250 ------~~--~~a~~l~~~~~-~~g~~~~~~~~-~~li----~~y~~~g~~~~-------A~~lf~~m~~----~~~~~~  304 (801)
                            ..  ....-++++.+ -.++.|++... ...+    +.+...|+..+       +..++++...    .+...|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00  01122233332 23555554321 1111    34444555443       4444443322    122223


Q ss_pred             HHHHHHH---HhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHH
Q 003710          305 NAMVGGY---VVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP-NVALETALID  380 (801)
Q Consensus       305 ~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~  380 (801)
                      ..+..--   .+..+.+.....+.+......+.|+ .+|...++...+..-+..|+.+|..+.+.+..+ ++.++++++.
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE  410 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME  410 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence            2222111   1112355666677777655344554 467888888888999999999999999988877 8999999999


Q ss_pred             HHHccCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHHHHHHhhcChh
Q 003710          381 MYAGSGALKMTEKLFGSMIE--KN-LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA--MTFASILPAYAEIATLS  455 (801)
Q Consensus       381 ~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~  455 (801)
                      .|| .++.+-|.++|+.-..  .| ..--+..++-+...++-..|..+|++....++.||.  ..|..+|.-=+..|++.
T Consensus       411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~  489 (656)
T KOG1914|consen  411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN  489 (656)
T ss_pred             HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence            888 4677889999986533  23 344456778888889999999999999988777764  67899999889999999


Q ss_pred             hHHHHHHHHHHh-C--CCCchHHHHHHHHHHHhcCCccc
Q 003710          456 DSMQIHSLITKL-G--LVSNIYISNSIVYMYAKCGDLQT  491 (801)
Q Consensus       456 ~a~~i~~~~~~~-g--~~~~~~~~~~li~~y~~~g~~~~  491 (801)
                      .+.++-+.+... .  ..+....-..+++.|.-.+....
T Consensus       490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence            988887766532 1  33333444556666665554443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.95  E-value=1.2e-05  Score=52.41  Aligned_cols=34  Identities=24%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             cccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCC
Q 003710          200 TVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRY  233 (801)
Q Consensus       200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  233 (801)
                      +.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999988887

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.94  E-value=1.5e-05  Score=51.87  Aligned_cols=33  Identities=39%  Similarity=0.685  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP  528 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  528 (801)
                      .+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.94  E-value=0.00026  Score=68.05  Aligned_cols=125  Identities=11%  Similarity=0.061  Sum_probs=99.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH-HHhcCC--HH
Q 003710          508 HGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDL-LGRIGN--LD  583 (801)
Q Consensus       508 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~  583 (801)
                      .++.++++..+++..+.. ..|...|..+...+...|++++|...|+...+   +.|+ ...+..+..+ |.+.|+  .+
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            455667788888877743 34556788888899999999999999998874   5675 8888888886 467787  59


Q ss_pred             HHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710          584 QAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV  636 (801)
Q Consensus       584 eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  636 (801)
                      +|.+++++... .| +...+..|...+...|++++|+..+++++++.|++..-+.
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            99999998764 34 5677888888899999999999999999999998776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.91  E-value=0.0011  Score=75.74  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCc-chHHH
Q 003710          527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA-RIWGA  603 (801)
Q Consensus       527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~  603 (801)
                      ..+...+..|.....+.|.+++|..+++...   .+.|+ ......++..+.+.+++++|+..+++... .|+. .....
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            3445666777777777777777777777766   45676 66666777777777777777777776654 4543 34444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      +..++...|++++|..+|++++..+|+++.+++.++..+...|+.++|...|+...
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55556677777777777777777777777777777777777777777777776663

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.90  E-value=0.00057  Score=74.32  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=60.5

Q ss_pred             CCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 003710          267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPS  346 (801)
Q Consensus       267 ~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~  346 (801)
                      +|-...-..+...+.++|-...|..+|++.     ..|...|.+|...|+..+|..+.++-.++   +||..-|..+.+.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDV  466 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhh
Confidence            344445556677888888888888888874     46777888888888888888877776653   5666666666665


Q ss_pred             HhccCChHHHHHHHHH
Q 003710          347 CTKLGALLEGKSIHGY  362 (801)
Q Consensus       347 ~~~~g~~~~a~~~~~~  362 (801)
                      ..+..-+++|.++.++
T Consensus       467 ~~d~s~yEkawElsn~  482 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNY  482 (777)
T ss_pred             ccChHHHHHHHHHhhh
Confidence            5555555555555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.89  E-value=0.0019  Score=75.02  Aligned_cols=231  Identities=11%  Similarity=0.115  Sum_probs=178.8

Q ss_pred             CC-hhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---chHHHHHHHHHHhcCCChHHHHHHHhhcCCC-C-cccHH
Q 003710          233 YD-RFSLISALGAISIEGCLKIGKEIHCQVIKS-GLEM---DVMVQTSLVDMYGKCGVVDYAERLFNMIFPR-N-IVAWN  305 (801)
Q Consensus       233 p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~-~-~~~~~  305 (801)
                      || ...|..-+......++++.|+++.++.++. ++.-   -..+|.+++++-...|.-+...++|++..+- | ...|.
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence            54 345666677777888999999999888765 2221   2457888888888888889999999998763 2 35688


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHc
Q 003710          306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL-PNVALETALIDMYAG  384 (801)
Q Consensus       306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k  384 (801)
                      .|...|.+.+++++|-++|+.|.+.  +.-....|...+..+.+..+-+.|..++..+++.--. -...+..-.+.+-.+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            8999999999999999999999986  4455667888888888999989999999888875322 245566777888889


Q ss_pred             cCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHHHHHHhhcChhhHHH
Q 003710          385 SGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA--MTFASILPAYAEIATLSDSMQ  459 (801)
Q Consensus       385 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~  459 (801)
                      +|+.+.++.+|+.....   -...|+..|+.=.++|+.+.+..+|++....++.|-.  +.|...|..=.+.|+-+.+..
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            99999999999988432   4568999999999999999999999999998888763  456666665555666555555


Q ss_pred             HHHHHH
Q 003710          460 IHSLIT  465 (801)
Q Consensus       460 i~~~~~  465 (801)
                      +-..+.
T Consensus      1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred             HHHHHH
Confidence            544444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.89  E-value=0.00081  Score=67.21  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=92.7

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCCC---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh----h
Q 003710          371 NVALETALIDMYAGSGALKMTEKLFGSMIEK---NL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM----T  440 (801)
Q Consensus       371 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t  440 (801)
                      ....+-.+...|.+.|++++|...|+++...   +.   ..|..+...|.+.|++++|+..|+++.+.  .|+..    +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            3444555666677777777777777765322   11   35566677777788888888888887653  33322    2


Q ss_pred             HHHHHHHHHhh--------cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHH
Q 003710          441 FASILPAYAEI--------ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGK  512 (801)
Q Consensus       441 ~~~ll~a~~~~--------~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~  512 (801)
                      +..+-.++.+.        |+.+.|.+.++.+.+.. +.+.....++.....    ..... ......+...|...|+++
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~~-~~~~~~~a~~~~~~g~~~  183 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNRL-AGKELYVARFYLKRGAYV  183 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHcCChH
Confidence            22222333332        56777788877777653 112222222211100    00000 001113344455566666


Q ss_pred             HHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710          513 ISIQLFSEMREKGI-KP-NESTFVSLLSSCSISGMVDEGWNYFDSMRK  558 (801)
Q Consensus       513 ~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  558 (801)
                      +|+..|++..+..- .| ....+..+..++.+.|++++|..+++.+..
T Consensus       184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666666555310 11 123455555566666666666666655544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.00084  Score=64.43  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCC
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNND  613 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~  613 (801)
                      ++....+.|++.+|...|++...  .-.+|.+.|+.+.-+|.+.|++++|..-|.+... . .++...+.|.-.+...||
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            44444444555555555444432  2222344455555555555555555444433321 1 223344444444445555


Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710          614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      .+.|+..+.......+.|..+-..|+-+-...|+.++|..+
T Consensus       184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            55555555444444444444444444445555555554443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.0006  Score=72.26  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=143.3

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003710          349 KLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMEL  425 (801)
Q Consensus       349 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l  425 (801)
                      +.|++.+|.-.|+..++.. +-+...|--|-......++-..|+..+++..+   .|....-+|...|...|.-.+|+.+
T Consensus       297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            4455666666666665553 33555666666666666666677777666543   3566677777888888988999999


Q ss_pred             HHHHhCCCCC--------CCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710          426 FQDLWSEPLK--------PDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYISNSIVYMYAKCGDLQTARDVV  496 (801)
Q Consensus       426 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~  496 (801)
                      |+.-+....+        ++..+-..  ..+.....+....++|-.+. ..+..+|..++.+|.-.              
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL--------------  439 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL--------------  439 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH--------------
Confidence            8887543210        01000000  01111122233333333333 44433455555544444              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                              |-..|++++|+..|+..+.  ++|+.. +|+-|...++...+.++|+..|++..   .+.|+ +...-.|.-
T Consensus       440 --------y~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  440 --------YNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGI  506 (579)
T ss_pred             --------HhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhh
Confidence                    3444555555888888777  567544 68888888888888888888888776   46777 666666777


Q ss_pred             HHHhcCCHHHHHHHHHhCC---CC---------CCcchHHHHHHHHHhcCCHHHHH
Q 003710          575 LLGRIGNLDQAKRFIEEMP---SA---------PTARIWGALLTASRKNNDIVSAE  618 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~---~~---------p~~~~~~~ll~~~~~~g~~~~a~  618 (801)
                      .|...|.++||.+.|-...   .+         ++..+|.+|-.++...++.+.+.
T Consensus       507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            7788888888777654321   11         23357777776666666665443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.80  E-value=0.073  Score=56.49  Aligned_cols=171  Identities=8%  Similarity=0.099  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCccccchHHH
Q 003710          419 NREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVS-NIYISNSIVYMYAKCGDLQTARDVVS  497 (801)
Q Consensus       419 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~d~~~  497 (801)
                      .+...+.++++...-..--..+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++.-||.            
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs------------  414 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS------------  414 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc------------
Confidence            55566666666554322234567788888888999999999999999888777 78888888887774            


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF-VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIID  574 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~  574 (801)
                                 ++.+-|.++|+--+..  -+|...| ...+.-+.+.++-..++.+|+..... ++.|+  ...|..+++
T Consensus       415 -----------kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~  480 (656)
T KOG1914|consen  415 -----------KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLE  480 (656)
T ss_pred             -----------CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHH
Confidence                       4455567888764442  3444433 35566677888888899999998876 77777  788999999


Q ss_pred             HHHhcCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHhcCCHH
Q 003710          575 LLGRIGNLDQAKRFIEEMPS------APTARIWGALLTASRKNNDIV  615 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~  615 (801)
                      -=..-|+++.+.++-+++-.      ++....-..++.-+...+...
T Consensus       481 yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  481 YESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             HHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence            98999999988888766532      222233344555666555543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.74  E-value=3.5e-05  Score=48.83  Aligned_cols=31  Identities=42%  Similarity=0.846  Sum_probs=27.1

Q ss_pred             ccHHHHHHHHHcCCChhhHHHHHHHHHhCCC
Q 003710          201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGL  231 (801)
Q Consensus       201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  231 (801)
                      ++||+||++|++.|++++|.++|++|++.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            5799999999999999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.73  E-value=3.4e-05  Score=48.90  Aligned_cols=31  Identities=39%  Similarity=0.702  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGI  526 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  526 (801)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4789999999999999999999999988774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.69  E-value=0.0059  Score=70.60  Aligned_cols=221  Identities=12%  Similarity=0.103  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHH-HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHH
Q 003710          402 NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILP-AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIV  480 (801)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li  480 (801)
                      +...|..|+..|...+++++|.++.++..+  ..|+...+-.++. .+.+.+..+.+..+  .+...  .+...-++..-
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve  103 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE  103 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence            445666677777777777777777775544  3455443332222 34444555555444  22211  11111112222


Q ss_pred             HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710          481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY  560 (801)
Q Consensus       481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~  560 (801)
                      ..|.+.|+.-+  +-.++-.+..+|-+.|+.++|...|+++++.. .-|....+.+...++.. ++++|++++...... 
T Consensus       104 ~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-  178 (906)
T PRK14720        104 HICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-  178 (906)
T ss_pred             HHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence            22222222211  23456778888999999999999999999954 23455678888888888 999999998887653 


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----------------------CCCcchHHHHHHHHHhcCCHHHHH
Q 003710          561 GIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS----------------------APTARIWGALLTASRKNNDIVSAE  618 (801)
Q Consensus       561 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----------------------~p~~~~~~~ll~~~~~~g~~~~a~  618 (801)
                                     |...+++.++.++++++..                      ..-..+|.-|...|...++++.+.
T Consensus       179 ---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        179 ---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             ---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence                           3334455555554444432                      122345555667788888999999


Q ss_pred             HHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710          619 FAARHVLSSAQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       619 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .+++.+++.+|.|..+..-++..|.  +++.+
T Consensus       244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~  273 (906)
T PRK14720        244 YILKKILEHDNKNNKAREELIRFYK--EKYKD  273 (906)
T ss_pred             HHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence            9999999999999888888888776  44444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.69  E-value=0.0011  Score=60.30  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=57.6

Q ss_pred             cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCc----chHHHHHHHHHhcCCHHH
Q 003710          543 SGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTA----RIWGALLTASRKNNDIVS  616 (801)
Q Consensus       543 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~----~~~~~ll~~~~~~g~~~~  616 (801)
                      .++...+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+..... |+.    ..+..|...+...|+++.
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            44445555555555443222111 122223344455555555555555544332 221    223334444555566666


Q ss_pred             HHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710          617 AEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI  657 (801)
Q Consensus       617 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~  657 (801)
                      |...++. ....+..+..+..++++|.+.|++++|...|+.
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555544 122233445666788888888888888887764

>PLN02789 farnesyltranstransferase

Probab=97.65  E-value=0.0086  Score=62.00  Aligned_cols=198  Identities=9%  Similarity=0.150  Sum_probs=136.7

Q ss_pred             CCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710          417 GQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV  496 (801)
Q Consensus       417 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~  496 (801)
                      +++.+|+.+|+....                  ..+..++|..+...+++..  |+                     +..
T Consensus        34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln--P~---------------------~yt   72 (320)
T PLN02789         34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN--PG---------------------NYT   72 (320)
T ss_pred             HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC--ch---------------------hHH
Confidence            455666666665543                  3456777888888777653  32                     223


Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710          497 SWNVIIMAYAIHG-LGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGM--VDEGWNYFDSMRKDYGIVPG-IEHYGC  571 (801)
Q Consensus       497 ~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~~~~  571 (801)
                      +|+.....+...| +.++++..++++.+.  .|+. .+|..-...+.+.|.  .+++..+++.+.+   +.|. -..|+.
T Consensus        73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~---~dpkNy~AW~~  147 (320)
T PLN02789         73 VWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS---LDAKNYHAWSH  147 (320)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH---hCcccHHHHHH
Confidence            4555544555556 568889999999985  3443 356544444555565  3677888887774   4565 788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhc---CCH----HHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKN---NDI----VSAEFAARHVLSSAQDNTGCYVLLSNMY  642 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~y  642 (801)
                      ...++.+.|++++|++.++++..  ..|...|+.....+...   |..    +.......++++.+|+|.+++..+..+|
T Consensus       148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll  227 (320)
T PLN02789        148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF  227 (320)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence            88999999999999999999864  35677888777666554   222    4566777899999999999999999999


Q ss_pred             HHc----CCchHHHHHHHHHHH
Q 003710          643 AEA----GRWEDVEQIKAIMEK  660 (801)
Q Consensus       643 ~~~----g~~~~a~~~~~~m~~  660 (801)
                      ...    ++..+|.+......+
T Consensus       228 ~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        228 KDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             hcCCcccccchhHHHHHHHhhc
Confidence            873    344567666655443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.65  E-value=0.00088  Score=60.20  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             HHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710          516 QLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMP  593 (801)
Q Consensus       516 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~  593 (801)
                      ++|++...  ..|+.. ....+...+...|++++|.+.|+.+...   .| +...+..+...|.+.|++++|...++...
T Consensus         4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555  456543 4566677788899999999999988753   35 47888899999999999999999988764


Q ss_pred             C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchh
Q 003710          594 S--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGC  634 (801)
Q Consensus       594 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  634 (801)
                      .  ..+...|..+...+...|+.+.|...++++++++|++...
T Consensus        79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            2  3456777778888999999999999999999999987653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.61  E-value=0.094  Score=52.39  Aligned_cols=211  Identities=13%  Similarity=0.107  Sum_probs=108.6

Q ss_pred             HhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHH---HHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 003710          172 CNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMI---GGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIE  248 (801)
Q Consensus       172 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  248 (801)
                      .-.|-+.+...|++.+|+.-|....+-|...|-++-   ..|...|+...|+.=|.+..+  ++||-..-. +-      
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-iQ------  111 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-IQ------  111 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH-HH------
Confidence            344555566667777777777766666666666654   356666666666666655544  334421100 00      


Q ss_pred             CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 003710          249 GCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKML  328 (801)
Q Consensus       249 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  328 (801)
                                                 --..+.|.|.++.|..=|+.+.+.+.. -+....++.+.-       +..++.
T Consensus       112 ---------------------------Rg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~  156 (504)
T KOG0624|consen  112 ---------------------------RGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW  156 (504)
T ss_pred             ---------------------------hchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH
Confidence                                       012344556666666655555332210 000011111100       111110


Q ss_pred             hCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC---CCCCHHH
Q 003710          329 EDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM---IEKNLVS  405 (801)
Q Consensus       329 ~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~  405 (801)
                                .....+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++..   ...+...
T Consensus       157 ----------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~  225 (504)
T KOG0624|consen  157 ----------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG  225 (504)
T ss_pred             ----------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence                      11222333344455555555555555432 345666666677777777777776655443   3345555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710          406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM  439 (801)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~  439 (801)
                      .--+-..+-..|+.+.++...++-++  +.||..
T Consensus       226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK  257 (504)
T KOG0624|consen  226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHK  257 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence            55556666777888888777777765  456643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.0043  Score=59.13  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=38.2

Q ss_pred             hcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710          578 RIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK  655 (801)
Q Consensus       578 ~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~  655 (801)
                      ..|++++|+++++.... . -|.+++..=+......|..-+|++.....++..+.|...+.-|+++|...|++++|.-.+
T Consensus        98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl  177 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL  177 (289)
T ss_pred             HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            34445555555544432 1 223334444444444444444444444444455555555555555555555555554444


Q ss_pred             HHHH
Q 003710          656 AIME  659 (801)
Q Consensus       656 ~~m~  659 (801)
                      +++.
T Consensus       178 EE~l  181 (289)
T KOG3060|consen  178 EELL  181 (289)
T ss_pred             HHHH
Confidence            4443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.52  E-value=0.00065  Score=56.08  Aligned_cols=92  Identities=21%  Similarity=0.209  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG  646 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g  646 (801)
                      +..+...+...|++++|.+++++... .|+ ...|..+...+...|+.+.|...++.+++..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44566677777888888887776543 233 3566667777777888888888888888888888888888899999999


Q ss_pred             CchHHHHHHHHHHH
Q 003710          647 RWEDVEQIKAIMEK  660 (801)
Q Consensus       647 ~~~~a~~~~~~m~~  660 (801)
                      ++++|...+....+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            99999888877654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.47  E-value=0.028  Score=65.15  Aligned_cols=80  Identities=11%  Similarity=0.074  Sum_probs=43.1

Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCC
Q 003710          237 SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAH  316 (801)
Q Consensus       237 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~  316 (801)
                      .+..+..+|.+.|+.+++.++++++++.. +.|..+.|-+...|+.. ++++|.+++.+.           +..|....+
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq  184 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ  184 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence            33344444444555555555555555544 33555566666666666 666666665542           333555556


Q ss_pred             hhHHHHHHHHHHh
Q 003710          317 FLESFSCLRKMLE  329 (801)
Q Consensus       317 ~~~A~~l~~~m~~  329 (801)
                      +.++.+++.++..
T Consensus       185 ~~~~~e~W~k~~~  197 (906)
T PRK14720        185 YVGIEEIWSKLVH  197 (906)
T ss_pred             chHHHHHHHHHHh
Confidence            6666666666654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.47  E-value=0.0016  Score=68.70  Aligned_cols=120  Identities=12%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhc
Q 003710          103 NVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKL  182 (801)
Q Consensus       103 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  182 (801)
                      .+|++.+...++++.|+++|+++.+..  |+  ....+.+.+...++-.+|.++....++.. +.|..........+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            344555555666667777777666543  33  33345555555555566666666665443 23444555555556666


Q ss_pred             CCchHHHHhhccCC--CC-CcccHHHHHHHHHcCCChhhHHHHHHHHH
Q 003710          183 GCVECAERMFDEMP--VR-DTVSWNSMIGGYCSVGDGVSSLVFFKEMQ  227 (801)
Q Consensus       183 g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~  227 (801)
                      ++.+.|.++.++..  .| +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777766654  33 34467777777777777777777766664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.45  E-value=0.0057  Score=55.66  Aligned_cols=125  Identities=15%  Similarity=0.071  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYG  570 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~  570 (801)
                      .|..++..+ ..++...+.+.++++....  |+.    .....+...+...|++++|...|+..... ...|.  ....-
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence            455555555 4788888888999998853  443    23344556788899999999999999875 32333  23455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003710          571 CIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNNDIVSAEFAARHVL  625 (801)
Q Consensus       571 ~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  625 (801)
                      .|..++...|++++|+..++..+.. .....+..+...+...|+.+.|+..+++++
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6788899999999999999886543 344566677778999999999999998763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.44  E-value=0.002  Score=56.29  Aligned_cols=98  Identities=11%  Similarity=0.016  Sum_probs=44.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHH
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASR  609 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~  609 (801)
                      +...+...|++++|.+.|+.+.+.+.-.|. ...+..+..++.+.|++++|.+.++.... .|+    ..++..+...+.
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   87 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ   87 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence            333444444555555554444432111111 22333344445555555555554444322 122    233444444555


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCch
Q 003710          610 KNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       610 ~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      ..|+.+.|...++++++..|++..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        88 ELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HhCChHHHHHHHHHHHHHCcCChh
Confidence            555555555556655555555543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.42  E-value=0.036  Score=59.63  Aligned_cols=199  Identities=17%  Similarity=0.183  Sum_probs=120.9

Q ss_pred             HHHHhccCChHHHHHH--HHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003710          344 LPSCTKLGALLEGKSI--HGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNRE  421 (801)
Q Consensus       344 l~~~~~~g~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~  421 (801)
                      =.+|.+..++.--+-+  ++.+.++|-.|+...   +.+.++-.|++.+|-++|.                  ++|....
T Consensus       605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enR  663 (1081)
T KOG1538|consen  605 RKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENR  663 (1081)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhh
Confidence            3444444443333222  344556666666543   3445566788888888874                  5577777


Q ss_pred             HHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHH
Q 003710          422 AMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVI  501 (801)
Q Consensus       422 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~l  501 (801)
                      |+++|.+|+--          -..+-+...|..++-..+.+.-.+..  -++.--.+-..|+...|+.++|.        
T Consensus       664 AlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi--------  723 (1081)
T KOG1538|consen  664 ALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAI--------  723 (1081)
T ss_pred             HHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhh--------
Confidence            88888777521          12233344455444444433322111  11111134567888889999884        


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGN  581 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  581 (801)
                       .....+|-.+-++++-+++-.    .+..+...+..-+.+...+..|-++|..|-.          ...++++....++
T Consensus       724 -~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~  788 (1081)
T KOG1538|consen  724 -EICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQR  788 (1081)
T ss_pred             -hhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeeccc
Confidence             344566767777776666533    3444555555556667778888999988743          2468899999999


Q ss_pred             HHHHHHHHHhCCC-CCCc
Q 003710          582 LDQAKRFIEEMPS-APTA  598 (801)
Q Consensus       582 ~~eA~~~~~~m~~-~p~~  598 (801)
                      |+||..+-++.|. .||.
T Consensus       789 W~eAFalAe~hPe~~~dV  806 (1081)
T KOG1538|consen  789 WDEAFALAEKHPEFKDDV  806 (1081)
T ss_pred             chHhHhhhhhCccccccc
Confidence            9999999999985 3443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.036  Score=53.09  Aligned_cols=191  Identities=12%  Similarity=0.095  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHhC---CC-CCCCHhh-HHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccc
Q 003710          417 GQNREAMELFQDLWS---EP-LKPDAMT-FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQT  491 (801)
Q Consensus       417 g~~~~A~~l~~~m~~---~g-~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  491 (801)
                      .++++.++++.+|..   .| ..++..+ |-.++-+....|..+.|...++.+...- +.+..+..--            
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lk------------   92 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLK------------   92 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHH------------
Confidence            456777777777753   24 5566554 3455666677888888888888877543 2222221100            


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710          492 ARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC  571 (801)
Q Consensus       492 A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~  571 (801)
                              +  .-+-..|++++|+++++..++.. +.|.+++.-=+...-..|+--+|++-+....+  .+..|.+.|.-
T Consensus        93 --------a--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~e  159 (289)
T KOG3060|consen   93 --------A--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHE  159 (289)
T ss_pred             --------H--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHH
Confidence                    0  11334678888899999999876 55666777666666778888899988888876  45667999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCCch
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNN---DIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      +.++|...|++++|.-.++++.. .| ++..+..|...+...|   |.+.+...+++.+++.|.+..
T Consensus       160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence            99999999999999999998754 45 4455556666554444   678899999999999996543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.38  E-value=0.18  Score=52.19  Aligned_cols=103  Identities=21%  Similarity=0.229  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC
Q 003710          374 LETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT  453 (801)
Q Consensus       374 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~  453 (801)
                      +.+..|.-+...|....|.++..+..-+|-..|-..|.+|+..++|++-..+...      +-..+-|..++.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3444566667789999999999999999999999999999999999987776442      1234889999999999999


Q ss_pred             hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCcccc
Q 003710          454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA  492 (801)
Q Consensus       454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  492 (801)
                      ..+|..+...+          .+..-+.+|.+||++.+|
T Consensus       253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A  281 (319)
T PF04840_consen  253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEA  281 (319)
T ss_pred             HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHH
Confidence            98888776651          225678899999998888

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.36  E-value=0.0022  Score=55.97  Aligned_cols=97  Identities=16%  Similarity=0.043  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---chhHHHH
Q 003710          567 EHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN---TGCYVLL  638 (801)
Q Consensus       567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l  638 (801)
                      ..+-.++..+.+.|++++|.+.++.+.. .|+    ...+..+...+...|+++.|...++.++...|++   +..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            4566778889999999999999998854 343    2456668888999999999999999999988875   5678899


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          639 SNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       639 ~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +.+|.+.|++++|.+.++.+.+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCc
Confidence            9999999999999999999987643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.35  E-value=0.00048  Score=53.44  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHH
Q 003710          597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG-RWEDVEQIKAIMEK  660 (801)
Q Consensus       597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~  660 (801)
                      ++.+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...| ++++|.+.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999999999 79999999987765

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.34  E-value=0.00065  Score=51.93  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      +...+...|+++.|+..++++++.+|++...+..++.++...|++++|..+++++.+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            44567788999999999999999999999999999999999999999999999887643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.33  E-value=0.0045  Score=58.26  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710          495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN--ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC  571 (801)
Q Consensus       495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~  571 (801)
                      ...+..+...|...|++++|+..|++..+....++  ...+..+...+.+.|++++|...++...+   +.|+ ...+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~  111 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN  111 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence            34566777778888889999999999887443332  35677788888899999999999988774   3454 666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR  647 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~  647 (801)
                      +..+|...|+...|..-++...                  ..++.|...++++++.+|++   |..+...+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            7788888777666554333211                  12567888889999999886   4445555554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.051  Score=52.49  Aligned_cols=148  Identities=10%  Similarity=0.014  Sum_probs=99.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----H
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLL----G  577 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~  577 (801)
                      ...|...|++++|++..+...    ..+..  ..=...+.+..+.+-|.+.++.|.+-    -+..+.+.|..++    .
T Consensus       115 a~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence            345777888888888877621    11222  12223345667788888888888742    2344455444444    4


Q ss_pred             hcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH-HH
Q 003710          578 RIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE-QI  654 (801)
Q Consensus       578 ~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~  654 (801)
                      ..+.+.+|.-+|++|..  .|++.+.+-...+|...|++++|+.+++.++..++.++.+...++-.--..|+-.++. +.
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            45678888888888876  3777777777777888889999999988888888888888887777777777776554 34


Q ss_pred             HHHHH
Q 003710          655 KAIME  659 (801)
Q Consensus       655 ~~~m~  659 (801)
                      ...++
T Consensus       265 l~QLk  269 (299)
T KOG3081|consen  265 LSQLK  269 (299)
T ss_pred             HHHHH
Confidence            44443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.28  E-value=0.012  Score=55.12  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710          495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN--ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC  571 (801)
Q Consensus       495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~  571 (801)
                      ...|..+...+...|++++|+..|++.......|.  ..++..+...+.+.|++++|+..++...+   +.|+ ...+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence            45677778888888999999999998877432222  24677888888889999999999888764   3454 556666


Q ss_pred             HHHHHH-------hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710          572 IIDLLG-------RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       572 li~~~~-------~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      +..+|.       +.|++++|...+                         +.|...++++++.+|++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence            666666       444555444443                         346677778888888643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.26  E-value=0.00021  Score=58.01  Aligned_cols=58  Identities=14%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI  657 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~  657 (801)
                      ..|-.+..++...|+++.|..++++ .+.+|.+......++..|.+.|++++|.+++++
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3444455555555555555555555 455565656666778888888888888888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.044  Score=52.92  Aligned_cols=242  Identities=11%  Similarity=0.066  Sum_probs=125.3

Q ss_pred             HHccCChHHHHHHHhcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh-HH
Q 003710          382 YAGSGALKMTEKLFGSM-IE-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD-SM  458 (801)
Q Consensus       382 y~k~g~~~~A~~~f~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~  458 (801)
                      |.-.|.+..+...-... .. .++..-.-|-.+|...|.+...+.   +... |-.|....+..+-......++.+. -.
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~   93 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILA   93 (299)
T ss_pred             HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence            33446666555443322 12 233333344556666665443222   1111 113333333333222333333322 22


Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003710          459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD-------VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES  531 (801)
Q Consensus       459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  531 (801)
                      ++.+.+.......+......-...|...|+.++|.+       ..+.-.=+..+.+..+.+-|.+.+++|.+-   -+..
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~  170 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA  170 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence            334444444444443333444455677777777761       111111223345566677777777777662   2455


Q ss_pred             HHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHH
Q 003710          532 TFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALL  605 (801)
Q Consensus       532 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll  605 (801)
                      |.+-|..++.+    .+.+.+|.-+|++|.+  ...|+..+.+-+..+....|+++||..+++....+  .++.+...++
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            66655555543    4457777777777765  34566777777777777777888887777776542  3444444444


Q ss_pred             HHHHhcC-CHHHHHHHHHHHHccCCCCc
Q 003710          606 TASRKNN-DIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       606 ~~~~~~g-~~~~a~~~~~~~~~~~p~~~  632 (801)
                      -.-...| +.+.-.+...++....|..+
T Consensus       249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  249 VLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            4444444 33445566666666666643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.22  E-value=0.16  Score=52.14  Aligned_cols=155  Identities=12%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh-cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003710          407 NAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI-ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAK  485 (801)
Q Consensus       407 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  485 (801)
                      ...+..|...|++..|-.++.++-               ..|... |+++.|.+.|....+               .|..
T Consensus        98 ~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~---------------~y~~  147 (282)
T PF14938_consen   98 EKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAE---------------LYEQ  147 (282)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHH---------------HHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHH---------------HHHH
Confidence            344666777777777766666653               234444 677777777766653               2333


Q ss_pred             cCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 003710          486 CGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-----NES-TFVSLLSSCSISGMVDEGWNYFDSMRKD  559 (801)
Q Consensus       486 ~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  559 (801)
                      .|....+  ...+..+...+.+.|++++|+++|++....-...     +.. .|...+-.+...|++..|.+.|+.....
T Consensus       148 e~~~~~a--~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  148 EGSPHSA--AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             TT-HHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             CCChhhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3322222  2345667777888999999999999988754322     221 2333444666689999999999987632


Q ss_pred             c-CCCCC--hHHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 003710          560 Y-GIVPG--IEHYGCIIDLLGR--IGNLDQAKRFIEEMP  593 (801)
Q Consensus       560 ~-~~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~m~  593 (801)
                      . ++..+  ......|++++-.  ...+++|..-|+.+.
T Consensus       226 ~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  226 DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            1 22222  3345556666643  345777777777765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.20  E-value=0.0018  Score=68.61  Aligned_cols=103  Identities=16%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCC
Q 003710          537 LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNND  613 (801)
Q Consensus       537 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~  613 (801)
                      .......|++++|+++|+.+.+   +.|+ ...|..+..+|.+.|++++|+..+++... .| +...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            4556677889999999888874   3555 77788888888888888888888887743 33 45677777778888888


Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710          614 IVSAEFAARHVLSSAQDNTGCYVLLSNMY  642 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y  642 (801)
                      ++.|+..++++++++|++......+..+.
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            88888888888888888887766654443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0026  Score=62.79  Aligned_cols=105  Identities=15%  Similarity=0.075  Sum_probs=88.6

Q ss_pred             CCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCCchhHH
Q 003710          563 VPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNN---DIVSAEFAARHVLSSAQDNTGCYV  636 (801)
Q Consensus       563 ~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~  636 (801)
                      .|+ .+.|..|...|.+.|+.+.|..-|.+...  .+++..+..+..++....   ...++..+++++++++|.|.....
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            465 89999999999999999999999987643  456777777777765443   467889999999999999999999


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHCCCccCC
Q 003710          637 LLSNMYAEAGRWEDVEQIKAIMEKEGLKKTT  667 (801)
Q Consensus       637 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~  667 (801)
                      .|+-.+..+|++.+|...|+.|.+.....+|
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999987654333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.16  E-value=0.0043  Score=65.82  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710          500 VIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG  577 (801)
Q Consensus       500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~  577 (801)
                      .....+...|++++|+++|++.++.  .|+ ...|..+..++.+.|++++|+..++.+.+   +.|+ ...|..+..+|.
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence            3456677889999999999999984  454 55677888899999999999999999874   4565 778999999999


Q ss_pred             hcCCHHHHHHHHHhCCC-CCCcchHHHHHHHH
Q 003710          578 RIGNLDQAKRFIEEMPS-APTARIWGALLTAS  608 (801)
Q Consensus       578 ~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~  608 (801)
                      ..|++++|...+++... .|+......++..|
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999998753 46554444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.0047  Score=60.61  Aligned_cols=96  Identities=18%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHH
Q 003710          540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVS  616 (801)
Q Consensus       540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~  616 (801)
                      ..+.+++++|+..|....   .+.|+ ..-|..=..+|.+.|.++.|.+-.+.... .|. ...|..|..++...|+.++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            344555666666655554   34444 33444445556666666666555554432 222 3456666666666666666


Q ss_pred             HHHHHHHHHccCCCCchhHHHH
Q 003710          617 AEFAARHVLSSAQDNTGCYVLL  638 (801)
Q Consensus       617 a~~~~~~~~~~~p~~~~~~~~l  638 (801)
                      |++.|+++++++|++...-..|
T Consensus       168 A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhccCCCcHHHHHHH
Confidence            6666666666666666444333

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.02  E-value=0.012  Score=55.21  Aligned_cols=99  Identities=13%  Similarity=0.176  Sum_probs=61.9

Q ss_pred             hcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCC
Q 003710          451 IATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI--HGLGKISIQLFSEMREKGIKP  528 (801)
Q Consensus       451 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p  528 (801)
                      .|.++-....+..|.+.|+..|..+|+.|++.+=| |.+---       .++.+--.  ..+-+-|++++++|...|+-|
T Consensus        65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~-------n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~P  136 (228)
T PF06239_consen   65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPR-------NFFQAEFMHYPRQQECAIDLLEQMENNGVMP  136 (228)
T ss_pred             cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccc-------cHHHHHhccCcHHHHHHHHHHHHHHHcCCCC
Confidence            35555566666777778888888888888887766 332211       11111111  123455788888888888888


Q ss_pred             CHHHHHHHHHHHhccCCH-HHHHHHHHHhH
Q 003710          529 NESTFVSLLSSCSISGMV-DEGWNYFDSMR  557 (801)
Q Consensus       529 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~  557 (801)
                      |..|+..|+..+.+.+.. .+.+++.-.|-
T Consensus       137 d~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  137 DKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             cHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            888888888888776543 33333333333

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.02  E-value=0.0073  Score=50.12  Aligned_cols=87  Identities=18%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003710          407 NAMIAAYVRNGQNREAMELFQDLWSEPL-KPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAK  485 (801)
Q Consensus       407 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  485 (801)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++...-.                              
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~------------------------------   78 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS------------------------------   78 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc------------------------------
Confidence            3445555555666666666666666666 666666666665554422110                              


Q ss_pred             cCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 003710          486 CGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSI  542 (801)
Q Consensus       486 ~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  542 (801)
                           ++              -.++.-+.+.+|+.|+..+++|+..||+.++.++.+
T Consensus        79 -----~~--------------ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   79 -----ED--------------IENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             -----hh--------------HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence                 01              112233457899999999999999999999988764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.01  E-value=0.018  Score=58.85  Aligned_cols=135  Identities=13%  Similarity=0.208  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSS-CSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID  574 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~  574 (801)
                      .+|-.++....+.+..+.|-.+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++  .+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence            468888888888888999999999998643 2233445444433 3335777779999999998653  45778899999


Q ss_pred             HHHhcCCHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          575 LLGRIGNLDQAKRFIEEMPSA-PT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      .+.+.|+.+.|..+|++.... |.    ..+|...+..-...|+++....+.+++.+..|++..
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            999999999999999987653 33    358999999999999999999999999998887543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.99  E-value=0.0031  Score=63.90  Aligned_cols=130  Identities=11%  Similarity=0.070  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-------C-CCCc
Q 003710          531 STFVSLLSSCSISGMVDEGWNYFDS---MRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP-------S-APTA  598 (801)
Q Consensus       531 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~-------~-~p~~  598 (801)
                      ..|..|.+.|.-.|+++.|+...+.   +.++||-+.. ...++.|.+++.-.|+++.|.+.++.-.       . ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3577777777788999999987764   3344554443 5678889999999999999999887532       1 1334


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHcc----C--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSS----A--QDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      .+.-+|.+.|....+++.|+..+.+=+.+    +  ......+..|+++|...|.-+.|..+.+.-.+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            56667888888888888888776654432    2  23456788999999999999999887665543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.99  E-value=0.0065  Score=49.84  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                      +|..+...+...|++++|+..+++..+.  .|+ ...+..+...+...|++++|.+.|+...+.   .|. ...+..+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~   76 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGL   76 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHH
Confidence            3556667777777777777777777663  333 345555666666667777777777666532   222 345555555


Q ss_pred             HHHhcCCHHHHHHHHHh
Q 003710          575 LLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~  591 (801)
                      .+...|+.++|.+.++.
T Consensus        77 ~~~~~~~~~~a~~~~~~   93 (100)
T cd00189          77 AYYKLGKYEEALEAYEK   93 (100)
T ss_pred             HHHHHHhHHHHHHHHHH
Confidence            55556666655555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.97  E-value=0.017  Score=64.08  Aligned_cols=65  Identities=17%  Similarity=0.085  Sum_probs=47.0

Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ++..+.++.-.....|+.++|...++++++++| +...|..++.+|...|+.++|.+.+++....+
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            345566665555566788888888888888887 46677888888888888888888777766543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.97  E-value=0.0076  Score=50.02  Aligned_cols=79  Identities=10%  Similarity=-0.024  Sum_probs=67.2

Q ss_pred             HHHHHHHHcCCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 003710          204 NSMIGGYCSVGDGVSSLVFFKEMQNCGL-RYDRFSLISALGAISIEG--------CLKIGKEIHCQVIKSGLEMDVMVQT  274 (801)
Q Consensus       204 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~~  274 (801)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..        .+-....+++.|+..++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4456667777999999999999999999 999999999999987654        2345678899999999999999999


Q ss_pred             HHHHHHhc
Q 003710          275 SLVDMYGK  282 (801)
Q Consensus       275 ~li~~y~~  282 (801)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99987664

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.96  E-value=0.011  Score=55.72  Aligned_cols=82  Identities=13%  Similarity=-0.038  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN  640 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  640 (801)
                      ...+..+...|.+.|++++|...+++... .|+    ...|..+...+...|+.+.|...++++++..|.+...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            34455666666667777777776665532 122    3467777778888888999999999999999998888888888


Q ss_pred             HHHHcCC
Q 003710          641 MYAEAGR  647 (801)
Q Consensus       641 ~y~~~g~  647 (801)
                      +|...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            8888776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.95  E-value=0.0012  Score=50.93  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=45.9

Q ss_pred             HhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          609 RKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       609 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      ...|+++.|...++++++.+|++..+...++.+|.+.|++++|..+++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999876654

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0027  Score=49.77  Aligned_cols=59  Identities=12%  Similarity=0.040  Sum_probs=52.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          605 LTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      ...+...++++.|...++.+++++|+++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            35677889999999999999999999999999999999999999999999998886543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.91  E-value=1.2  Score=50.77  Aligned_cols=161  Identities=12%  Similarity=0.031  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003710          496 VSWNVIIMAYAIHGLGK---ISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI  572 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l  572 (801)
                      .+-|.|+..+.+.++..   +|+-+++.-.... +-|..+-..+|..|+-.|-+..|.+.|+.+.-+ .|.-|..-|- +
T Consensus       437 Lav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~  513 (932)
T KOG2053|consen  437 LAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I  513 (932)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence            35688999999988866   4455555544421 334556677889999999999999999998655 6666633322 2


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcC
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAG  646 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g  646 (801)
                      ...+...|++..|...++....  ..+..--.-++.--.++|.+..-.+...---++.-.    -..+-....+.....+
T Consensus       514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~  593 (932)
T KOG2053|consen  514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD  593 (932)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3445566777777666654321  111111112334445667776655433322222211    1122346667778888


Q ss_pred             CchHHHHHHHHHH
Q 003710          647 RWEDVEQIKAIME  659 (801)
Q Consensus       647 ~~~~a~~~~~~m~  659 (801)
                      +.++-.+....|+
T Consensus       594 ~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  594 RGTQLLKLLESMK  606 (932)
T ss_pred             cHHHHHHHHhccc
Confidence            8888888888776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.90  E-value=0.00087  Score=43.17  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             HHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710          621 ARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE  652 (801)
Q Consensus       621 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~  652 (801)
                      ++++++++|+|+.+|..|+.+|...|++++|.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67899999999999999999999999999986

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.89  E-value=0.0082  Score=56.26  Aligned_cols=93  Identities=13%  Similarity=-0.128  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN  640 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  640 (801)
                      ...|..++..+...|++++|...+++... .|+    ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            45566667777777888888887776632 222    2477888888889999999999999999999998888888888


Q ss_pred             HHH-------HcCCchHHHHHHHHH
Q 003710          641 MYA-------EAGRWEDVEQIKAIM  658 (801)
Q Consensus       641 ~y~-------~~g~~~~a~~~~~~m  658 (801)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888888776666544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.87  E-value=0.027  Score=62.52  Aligned_cols=140  Identities=11%  Similarity=-0.037  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHhHHh
Q 003710          494 DVVSWNVIIMAYAIH--G---LGKISIQLFSEMREKGIKPNES-TFVSLLSSCSIS--------GMVDEGWNYFDSMRKD  559 (801)
Q Consensus       494 d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~  559 (801)
                      +...|...+.|....  +   ...+|+.+|++.++  ..||.. .+..+..++...        +.+..+.+........
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            677899888886543  2   37789999999999  678854 455443333221        1223334444433221


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710          560 YGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY  635 (801)
Q Consensus       560 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  635 (801)
                      .....+...|..+.-.....|++++|...+++... .|+...|..+...+...|+.++|...++++++++|.++..|
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence            11223457788887777788999999999998865 68888888889999999999999999999999999988643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.86  E-value=0.0036  Score=61.41  Aligned_cols=88  Identities=16%  Similarity=0.071  Sum_probs=78.3

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .+-+.+.+++++|++.|.+... . -|++.|..=..++.+.|.++.|.+.++.++.++|.....|..|+-+|...|++++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            4556788999999999998764 3 4677778888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 003710          651 VEQIKAIMEK  660 (801)
Q Consensus       651 a~~~~~~m~~  660 (801)
                      |.+.|++..+
T Consensus       168 A~~aykKaLe  177 (304)
T KOG0553|consen  168 AIEAYKKALE  177 (304)
T ss_pred             HHHHHHhhhc
Confidence            9999877655

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.85  E-value=0.8  Score=47.96  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=94.8

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003710          240 SALGAISIEGCLKIGKEIHCQVIKS----GLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNA  315 (801)
Q Consensus       240 ~ll~a~~~~~~~~~a~~l~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g  315 (801)
                      .....+...|.+.+|+.+++.++..    ....+..+||.++-++++.=-++-    -+.+...=..-|--||-.|.+.=
T Consensus       133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki  208 (549)
T PF07079_consen  133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKI  208 (549)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHH
Confidence            4455566777888887777776654    344788888888777776532221    11111111223555555554321


Q ss_pred             ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHccCChHHHH
Q 003710          316 HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKL--GALLEGKSIHGYAIRKGFLPNV-ALETALIDMYAGSGALKMTE  392 (801)
Q Consensus       316 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~  392 (801)
                      +.-++      -.-. .+.|....+..++....-.  ..+.--.+++..-.+.-+.|+- -+...|++-+.+  +.+++.
T Consensus       209 ~~~d~------~~Y~-k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~  279 (549)
T PF07079_consen  209 HAFDQ------RPYE-KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG  279 (549)
T ss_pred             HHHhh------chHH-hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence            11111      0001 2344444444444443322  2333344555555555555553 334455555554  444444


Q ss_pred             HHHhcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710          393 KLFGSM--------IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWS  431 (801)
Q Consensus       393 ~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  431 (801)
                      .+-+.+        .++=+.++..+++...+.++..+|-+.+.-+..
T Consensus       280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            443332        233456788888888999999998888877654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.84  E-value=0.0025  Score=51.62  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003710          508 HGLGKISIQLFSEMREKGI-KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQA  585 (801)
Q Consensus       508 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA  585 (801)
                      .|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. .   ...|. ....-.+..+|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            5788888888888887432 12344555577888888888888888877 2   22333 34444557888888888888


Q ss_pred             HHHHHh
Q 003710          586 KRFIEE  591 (801)
Q Consensus       586 ~~~~~~  591 (801)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            888765

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.74  E-value=0.014  Score=61.92  Aligned_cols=108  Identities=10%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CCchhHHHHHHHHHHccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHH
Q 003710          369 LPNVALETALIDMYAGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFA  442 (801)
Q Consensus       369 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~  442 (801)
                      ..+......+++......+++++..++.+....      -..|..++|..|...|..++++++++.=...|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334445555566555556666666655544221      12234466666666666666666666666666666666666


Q ss_pred             HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710          443 SILPAYAEIATLSDSMQIHSLITKLGLVSNIYIS  476 (801)
Q Consensus       443 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~  476 (801)
                      .||..+.+.|++..|.++...|...+...+..++
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~  176 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ  176 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence            6666666666666666666666554444444333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.74  E-value=0.041  Score=47.56  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 003710          500 VIIMAYAIHGLGKISIQLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLL  576 (801)
Q Consensus       500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~  576 (801)
                      .+..++-..|+.++|+.+|++....|+....  ..+..+.+++...|++++|..+|+.....+.-.+ +......+..++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            4556778889999999999999998876653  3577788899999999999999999886532211 123333445677


Q ss_pred             HhcCCHHHHHHHHHh
Q 003710          577 GRIGNLDQAKRFIEE  591 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~  591 (801)
                      ...|+.+||++.+-.
T Consensus        86 ~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   86 YNLGRPKEALEWLLE  100 (120)
T ss_pred             HHCCCHHHHHHHHHH
Confidence            888999998887644

>PRK15331 chaperone protein SicA; Provisional

Probab=96.73  E-value=0.011  Score=53.26  Aligned_cols=88  Identities=9%  Similarity=-0.025  Sum_probs=74.2

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .--+...|++++|..+|.-+..  .-+..-|..|...|...++++.|...+..+..++++|+.++...+..|...|+.++
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            3344567888888888775432  34566788888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 003710          651 VEQIKAIMEK  660 (801)
Q Consensus       651 a~~~~~~m~~  660 (801)
                      |...|....+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999988766

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.68  E-value=0.0028  Score=48.35  Aligned_cols=61  Identities=20%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      +...+.+.|++++|.+.++.... .| +...|..+...+...|++++|...++++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            34566677777777777776654 24 456677777778888888888888888888888764

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.63  E-value=0.014  Score=62.03  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=76.4

Q ss_pred             hhhHhHHHHHHHhcCCchHHHHhhccCCC-C-----CcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 003710          169 VYVCNSLIVMYMKLGCVECAERMFDEMPV-R-----DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISAL  242 (801)
Q Consensus       169 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  242 (801)
                      ......+++......+++++..++-+... |     -..|..++|+.|.+.|..++++.+++.=...|+-||.+||+.+|
T Consensus        66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm  145 (429)
T PF10037_consen   66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM  145 (429)
T ss_pred             HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence            33344444444444455555555444331 1     12344578888888888888888888877888888888888888


Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcC
Q 003710          243 GAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKC  283 (801)
Q Consensus       243 ~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~  283 (801)
                      ..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus       146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888777776666666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.56  E-value=0.6  Score=42.76  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=110.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 003710          504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNL  582 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~  582 (801)
                      +..+.=+++..++-..+-.+  +.|....-..|..+....|+..||...|++...  |+-.+ ....-.+..+....++.
T Consensus        65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccH
Confidence            33344444444433333333  567777778888999999999999999998875  66554 77777888888889999


Q ss_pred             HHHHHHHHhCCC-CC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710          583 DQAKRFIEEMPS-AP---TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       583 ~eA~~~~~~m~~-~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      .+|...+++.-. .|   .+..-..+...+...|..+.|+..++.++.--|+ +..-.....+++++|+.+++..-+..+
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            999998887643 22   2333445667888999999999999999987775 444556788899999998887665554


Q ss_pred             HH
Q 003710          659 EK  660 (801)
Q Consensus       659 ~~  660 (801)
                      -+
T Consensus       220 ~d  221 (251)
T COG4700         220 VD  221 (251)
T ss_pred             HH
Confidence            43

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.53  E-value=0.052  Score=49.38  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--
Q 003710          556 MRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS---APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD--  630 (801)
Q Consensus       556 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--  630 (801)
                      ..++..+-|++.+--.|..++.+.|+..||...|++...   ..|......+.++....++...|...++++.+.+|.  
T Consensus        79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r  158 (251)
T COG4700          79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR  158 (251)
T ss_pred             HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence            334446679999999999999999999999999998754   467788888889999999999999999999998875  


Q ss_pred             CchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          631 NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       631 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      .+....+++..|...|+..+|+.-|+...+.
T Consensus       159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         159 SPDGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence            5667889999999999999999999888764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.52  E-value=0.21  Score=49.67  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST----FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCII  573 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li  573 (801)
                      +-.....+...|++++|++.|+++...  -|+...    ...+..++.+.+++++|...|+...+.+.-.|+.. |....
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~  111 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYM  111 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHH
Confidence            334455567789999999999999884  455432    24566788999999999999999998776666642 22222


Q ss_pred             HHHH--hcC---------------C---HHHHHHHHHhCCCC-CCc------chHHH------------HHHHHHhcCCH
Q 003710          574 DLLG--RIG---------------N---LDQAKRFIEEMPSA-PTA------RIWGA------------LLTASRKNNDI  614 (801)
Q Consensus       574 ~~~~--~~g---------------~---~~eA~~~~~~m~~~-p~~------~~~~~------------ll~~~~~~g~~  614 (801)
                      .+++  ..+               +   ..+|++.++....+ |+.      .....            +..-+.+.|++
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y  191 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY  191 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            2221  111               1   23455555544321 322      11111            11236677888


Q ss_pred             HHHHHHHHHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          615 VSAEFAARHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       615 ~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      .-|..-++.+++.-|+.   ......+.++|.+.|..++|..+...+.
T Consensus       192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            88899999999877764   4567788999999999999999887664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=1.9  Score=48.09  Aligned_cols=114  Identities=11%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 003710          527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT  606 (801)
Q Consensus       527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~  606 (801)
                      .-...|.+--+.-+..-|...+|.++-.+.+     .||...|..=+.+++..+++++-+++-+++..   +.-|.-+..
T Consensus       681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe  752 (829)
T KOG2280|consen  681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVE  752 (829)
T ss_pred             ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHH
Confidence            3444456666777788899999988866543     38888888888999999999999998888652   566788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003710          607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA  656 (801)
Q Consensus       607 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~  656 (801)
                      +|.+.|+.++|.....+.-.        +.-...+|.+.|++.+|.++--
T Consensus       753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999877665321        1257889999999999988653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.50  E-value=0.0025  Score=49.14  Aligned_cols=57  Identities=18%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchH
Q 003710          542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIW  601 (801)
Q Consensus       542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~  601 (801)
                      ..|++++|.++|+.+...   .|+ ...+..++.+|.+.|++++|.++++++.. .|+...|
T Consensus         3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~   61 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY   61 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred             hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence            456777777777776643   343 55566666666667777776666666653 2443333

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.44  E-value=0.11  Score=46.83  Aligned_cols=89  Identities=7%  Similarity=-0.127  Sum_probs=46.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcC
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNN  612 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g  612 (801)
                      +..-+...|++++|.++|+.+..   +.|. ..-|-.|.-++-..|++++|++.+.....  ..|+..+-.+..++...|
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            33344555555555555555542   3343 34444555555555555555555554322  233444555555555666


Q ss_pred             CHHHHHHHHHHHHcc
Q 003710          613 DIVSAEFAARHVLSS  627 (801)
Q Consensus       613 ~~~~a~~~~~~~~~~  627 (801)
                      +.+.|+..++.++..
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            666666666655544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.39  E-value=0.032  Score=56.99  Aligned_cols=129  Identities=16%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCCcchHHHHHHH
Q 003710          531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGR-IGNLDQAKRFIEEMPS--APTARIWGALLTA  607 (801)
Q Consensus       531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~  607 (801)
                      .+|..++..+.+.+..+.|+.+|....+.  -.-+..+|.....+-.+ .++.+.|.++|+....  ..+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46888899999999999999999999743  22235667777777444 5666669999998764  4677889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          608 SRKNNDIVSAEFAARHVLSSAQDNT---GCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       608 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +...|+.+.++.++++.+..-|.+.   ..|...++.=.+.|+++.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998776654   57888888889999999999999999874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.32  E-value=0.023  Score=53.50  Aligned_cols=90  Identities=11%  Similarity=0.038  Sum_probs=66.6

Q ss_pred             CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcC----------------CChhHH
Q 003710           95 SYLDTYIWNVVIRGFVD-----NGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGL----------------LYLSEG  153 (801)
Q Consensus        95 ~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a  153 (801)
                      ..+|-.+|..+|..|.+     .|..+-....+..|.+-|+.-|..+|+.||..+=+.                .+.+-|
T Consensus        43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~  122 (228)
T PF06239_consen   43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA  122 (228)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence            34566666666666654     356666777788888888888888898888877542                134567


Q ss_pred             HHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710          154 EKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC  184 (801)
Q Consensus       154 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  184 (801)
                      .+++++|...|+-||..++..|++.+++.+.
T Consensus       123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            8888888888888888888888888866543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.31  E-value=1.7  Score=45.11  Aligned_cols=110  Identities=12%  Similarity=0.121  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 003710          532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKN  611 (801)
Q Consensus       532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~  611 (801)
                      +.+..+.-|...|....|.++-+    ++.+ |+..-|...+.+|+..|+|++-.++...   +..++-|..++.+|...
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            45556677778888888777654    4455 8888999999999999999999888764   44568899999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710          612 NDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       612 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      |+..+|.....++         .+..-+.+|.++|+|.+|.+.--+.
T Consensus       251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            9999988877761         2256788999999999998875443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.29  E-value=2.4  Score=46.76  Aligned_cols=278  Identities=14%  Similarity=0.117  Sum_probs=135.9

Q ss_pred             CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHhccCChHHHHHH
Q 003710          284 GVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD----CITIINLLPSCTKLGALLEGKSI  359 (801)
Q Consensus       284 g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~~~~~~g~~~~a~~~  359 (801)
                      |.+++|++++-+|..+|.     -|..+.+.|++-...++++.=    |-..|    ...+..+-..++....++.|.+.
T Consensus       748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888887777766664     345555666666666555432    11111    12455555555555555555555


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710          360 HGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM  439 (801)
Q Consensus       360 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~  439 (801)
                      +.+--.         ....+++|.+...+++-+.+-..+++. ....-.|...+...|.-++|.+.|-+--.    |   
T Consensus       819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p---  881 (1189)
T KOG2041|consen  819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P---  881 (1189)
T ss_pred             HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence            443211         112445555555555555555555443 23344566677777777777776644321    1   


Q ss_pred             hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcCCccccchHHHHHHHHHHHHHcCCHHHHH
Q 003710          440 TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY----AKCGDLQTARDVVSWNVIIMAYAIHGLGKISI  515 (801)
Q Consensus       440 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~  515 (801)
                        ...+.+|....++.+|.++-+...    -|.+.   +|+.-+    ...++.-+|         |.-+.+.|+.-+|.
T Consensus       882 --kaAv~tCv~LnQW~~avelaq~~~----l~qv~---tliak~aaqll~~~~~~ea---------Ie~~Rka~~~~daa  943 (1189)
T KOG2041|consen  882 --KAAVHTCVELNQWGEAVELAQRFQ----LPQVQ---TLIAKQAAQLLADANHMEA---------IEKDRKAGRHLDAA  943 (1189)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcc----chhHH---HHHHHHHHHHHhhcchHHH---------HHHhhhcccchhHH
Confidence              134556666666666665543322    11111   111111    111222222         44556666666677


Q ss_pred             HHHHHHHHC----CCCCCHHHHHHHHHHHh---------------ccCCHHHHHHHHHHhHHh--cCCC------CChHH
Q 003710          516 QLFSEMREK----GIKPNESTFVSLLSSCS---------------ISGMVDEGWNYFDSMRKD--YGIV------PGIEH  568 (801)
Q Consensus       516 ~l~~~m~~~----g~~p~~~t~~~ll~a~~---------------~~g~~~~a~~~~~~m~~~--~~~~------p~~~~  568 (801)
                      +++.+|.++    +.+|-..--..+|.|..               ..|..++|..++++-...  ..+.      ....|
T Consensus       944 rll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyH 1023 (1189)
T KOG2041|consen  944 RLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYH 1023 (1189)
T ss_pred             HHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHH
Confidence            777777543    44443332222222221               145555555544332110  0011      12345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC----CCCcchHHHHH
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS----APTARIWGALL  605 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll  605 (801)
                      +-.|..--...|+.+.|+.---.+..    -|...+|+.|.
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence            55555556678888888765433332    24445555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.27  E-value=0.33  Score=49.74  Aligned_cols=126  Identities=18%  Similarity=0.184  Sum_probs=72.5

Q ss_pred             CccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC-
Q 003710          488 DLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS-GMVDEGWNYFDSMRKDYGIVPG-  565 (801)
Q Consensus       488 ~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-  565 (801)
                      ++++|  +..|...+..|...|++..|-+++.++               ...|... |++++|.++|+...+-|..... 
T Consensus        89 ~~~~A--i~~~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   89 DPDEA--IECYEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             THHHH--HHHHHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             CHHHH--HHHHHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            44444  234555555566666666655555544               3345555 7778888777776654433222 


Q ss_pred             ---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCcchH---HHHH---HHHHhcCCHHHHHHHHHHHHccCCC
Q 003710          566 ---IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA---PTARIW---GALL---TASRKNNDIVSAEFAARHVLSSAQD  630 (801)
Q Consensus       566 ---~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---p~~~~~---~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~  630 (801)
                         ...+..+..++.+.|++++|.+++++....   .+..-|   ..++   -.+...||...|...+++....+|.
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence               445667778888888999998888865321   111111   1222   2345678888899999988888875

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.22  E-value=1.8  Score=44.55  Aligned_cols=140  Identities=19%  Similarity=0.152  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--HHHH-
Q 003710          512 KISIQLFSEMREKGIKPNEST-FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLD--QAKR-  587 (801)
Q Consensus       512 ~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~-  587 (801)
                      ..|...-.+..+  +.||-+- -..-..++.+.|++.++-.+++.+-+   .+|.+..+...+  +.|.|+..  ...+ 
T Consensus       246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa  318 (531)
T COG3898         246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRA  318 (531)
T ss_pred             HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHH
Confidence            334444444433  6777553 33445688999999999999998875   456655544332  34555522  2221 


Q ss_pred             -HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHH
Q 003710          588 -FIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA-GRWEDVEQIKAIMEK  660 (801)
Q Consensus       588 -~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~  660 (801)
                       -++.|+ +.+..+..++..+-...|++..|....+.+.+..|. .+.|.+|+++-... |+-.+++..+.+...
T Consensus       319 ~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         319 KKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence             133343 345667777788888999999999999999999986 56788999988666 988888877655443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.16  E-value=0.0079  Score=46.48  Aligned_cols=63  Identities=19%  Similarity=0.132  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 003710          567 EHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNN-DIVSAEFAARHVLSSAQ  629 (801)
Q Consensus       567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  629 (801)
                      ..|..+...+.+.|++++|+..|++... .| +...|..+..++...| +.++|...++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555556666666655555432 22 3455666666666666 56777777777777666

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.13  E-value=2.2  Score=44.84  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=13.6

Q ss_pred             HHHcCC-HHHHHHHHHHHhC
Q 003710          413 YVRNGQ-NREAMELFQDLWS  431 (801)
Q Consensus       413 ~~~~g~-~~~A~~l~~~m~~  431 (801)
                      +-+.|. -++|+++++...+
T Consensus       389 lW~~g~~dekalnLLk~il~  408 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQ  408 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHH
Confidence            444555 7888898888875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.09  E-value=0.048  Score=54.68  Aligned_cols=60  Identities=8%  Similarity=0.005  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +-.+...+...|+++.|...++++++..|++   +..+..++.+|...|++++|.++++.+.+
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344445555555555555555555555543   23344445556666666666666655544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.08  E-value=0.075  Score=48.34  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      ....++..+...|+.+.|...++.++..+|-+...|..++.+|...|+..+|.++++.++.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4456677788899999999999999999999999999999999999999999999988854

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.03  E-value=0.013  Score=40.42  Aligned_cols=42  Identities=26%  Similarity=0.287  Sum_probs=36.9

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN  640 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  640 (801)
                      .+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467888899999999999999999999999999988877753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.03  E-value=0.039  Score=47.68  Aligned_cols=82  Identities=17%  Similarity=0.094  Sum_probs=45.8

Q ss_pred             HHHhcCCHHHHHHHHHhCCCC----C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CchhHHHHHHHHHHcC
Q 003710          575 LLGRIGNLDQAKRFIEEMPSA----P-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQD---NTGCYVLLSNMYAEAG  646 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g  646 (801)
                      ++-..|+.++|..++++....    + -...+..+.+.++..|+.++|..++++.++..|+   +......++-.+...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            344445555555555443221    0 0123344555666666666666666666666565   4555556666777777


Q ss_pred             CchHHHHHHH
Q 003710          647 RWEDVEQIKA  656 (801)
Q Consensus       647 ~~~~a~~~~~  656 (801)
                      +++||.+.+-
T Consensus        90 r~~eAl~~~l   99 (120)
T PF12688_consen   90 RPKEALEWLL   99 (120)
T ss_pred             CHHHHHHHHH
Confidence            7777776653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.14  Score=52.57  Aligned_cols=152  Identities=11%  Similarity=0.032  Sum_probs=97.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHH-------------
Q 003710          504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS--SCSISGMVDEGWNYFDSMRKDYGIVPGIEH-------------  568 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------  568 (801)
                      ++...|+.++|...--..++.  .++. .+..+++  ++.-.++.+.|...|++..   .+.|+...             
T Consensus       178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence            344456666655554444432  1211 1222222  2334566677777776654   33444221             


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC-C-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS-A-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY  642 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y  642 (801)
                      +.-=.+-..+.|++.+|.+.+.+... .     |+...|.....+..+.|+.++|..-.+.+++++|.-...|..-++.+
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~  331 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH  331 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            11123445678899999988887643 2     44445555555667889999999999999999998888888899999


Q ss_pred             HHcCCchHHHHHHHHHHHC
Q 003710          643 AEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       643 ~~~g~~~~a~~~~~~m~~~  661 (801)
                      ...++|++|.+-++...+.
T Consensus       332 l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  332 LALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999988877653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.94  E-value=0.79  Score=49.86  Aligned_cols=222  Identities=13%  Similarity=0.001  Sum_probs=105.1

Q ss_pred             HHHHHHHhcCCChhHHHH--HHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCC
Q 003710          138 PFVIKACAGLLYLSEGEK--VHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGD  215 (801)
Q Consensus       138 ~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~  215 (801)
                      +..-++|.+.+++.--+-  -++.+.+.|-.|+...   +...++-.|.+.+|.++|.+                  .|.
T Consensus       602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~  660 (1081)
T KOG1538|consen  602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGH  660 (1081)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCc
Confidence            333445554444433222  2345566676676543   33455667888888888865                  445


Q ss_pred             hhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhh
Q 003710          216 GVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNM  295 (801)
Q Consensus       216 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~  295 (801)
                      -..|+++|.+|+--          -...-+...|+-++-+.+...-.+-  ..|+.--.+...++...|+.++|..+.-+
T Consensus       661 enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d  728 (1081)
T KOG1538|consen  661 ENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD  728 (1081)
T ss_pred             hhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc
Confidence            55666666655421          0111122233333322222211110  00111111233444555666666555322


Q ss_pred             cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 003710          296 IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALE  375 (801)
Q Consensus       296 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~  375 (801)
                                        +|-.+-+.++-+++-.     .+..+...+-.-+-+...+..|.++|..|-+         .
T Consensus       729 ------------------~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~  776 (1081)
T KOG1538|consen  729 ------------------HGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------L  776 (1081)
T ss_pred             ------------------ccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------H
Confidence                              2222333333333211     2233344444444455566667777665533         2


Q ss_pred             HHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003710          376 TALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME  424 (801)
Q Consensus       376 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~  424 (801)
                      .+++++....+++++|..+-++.++--...|-.-..-++.+.+++||.+
T Consensus       777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence            3577778888888888888887766422222222333344444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.92  E-value=0.11  Score=52.28  Aligned_cols=63  Identities=14%  Similarity=0.087  Sum_probs=32.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710          570 GCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       570 ~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      -.+..+|...|++++|...|+.+.. -|+    ...|..+...+...|+.+.|...++++++..|++.
T Consensus       184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            3444444444444444444444321 111    22333344455566777777777777777777654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.28  Score=47.29  Aligned_cols=134  Identities=12%  Similarity=-0.008  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHH
Q 003710          499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY----GIVPGIEHYGCIID  574 (801)
Q Consensus       499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~  574 (801)
                      +.++..+.-+|.+.-.+.++++.++..-+-+......|.+.-.+.|+.+.|..+|+...+..    ++.-...+...+..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            45566666677777778899999886555566777888888889999999999999766542    22333333344455


Q ss_pred             HHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710          575 LLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      .|.-++++.+|...+.+++..  .|++..+.-.-...-.|+...|.+..+.+++..|...
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            566777888888888887752  2333333333333456778888888888888877643

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.80  E-value=0.034  Score=58.57  Aligned_cols=62  Identities=15%  Similarity=-0.021  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMP-SAPTAR----IWGALLTASRKNNDIVSAEFAARHVLSS  627 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~  627 (801)
                      ...++.+..+|.+.|++++|+..+++.. ..|+..    .|..+..++...|+.++|...+++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4445555555555555555555555432 234422    3555555555555555555555555554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=1.5  Score=45.47  Aligned_cols=88  Identities=11%  Similarity=-0.043  Sum_probs=56.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710          502 IMAYAIHGLGKISIQLFSEMREK---GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG  577 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~  577 (801)
                      ..-..+.|++.+|.+.|.+.+..   .++|+...|.....+..+.|+.++|+.--+...   .+.|. +..|-.-..++.
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence            34456677777888888887762   234445556666667778888888887776654   34444 334444445555


Q ss_pred             hcCCHHHHHHHHHhC
Q 003710          578 RIGNLDQAKRFIEEM  592 (801)
Q Consensus       578 ~~g~~~eA~~~~~~m  592 (801)
                      -.++|++|.+-+++.
T Consensus       333 ~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            667788888777754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.70  E-value=4.4  Score=44.85  Aligned_cols=200  Identities=12%  Similarity=0.033  Sum_probs=107.8

Q ss_pred             CCCcccHHHHHHHHhcCCChhHHHHHHHHHHHh-CC--------CCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcc
Q 003710          131 KADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS-GL--------NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTV  201 (801)
Q Consensus       131 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~  201 (801)
                      .|.+..|..+.......-+++.|.+.|-+.... |+        -.+.....+=|.+|  .|++++|.+++-+|..+|. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence            466666666655544444445554444322110 11        01111222223333  4889999999998887765 


Q ss_pred             cHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003710          202 SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD----RFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLV  277 (801)
Q Consensus       202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li  277 (801)
                          -|..+.+.|++-...++++.   -|-..|    ...|..+-..++....++.|.+.+.+--..         ...+
T Consensus       766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~  829 (1189)
T KOG2041|consen  766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI  829 (1189)
T ss_pred             ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence                36667777887777666543   111111    234555555566666666666665443111         1234


Q ss_pred             HHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710          278 DMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGK  357 (801)
Q Consensus       278 ~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~  357 (801)
                      ++|.+..++++-+.+-+.+++ |....-.|...+...|..++|.+.|-+--.     |     -..+.+|...+++.+|.
T Consensus       830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----p-----kaAv~tCv~LnQW~~av  898 (1189)
T KOG2041|consen  830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----P-----KAAVHTCVELNQWGEAV  898 (1189)
T ss_pred             HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC-----c-----HHHHHHHHHHHHHHHHH
Confidence            455555555555555444443 344455667777777888888777654321     1     23455666666666666


Q ss_pred             HHH
Q 003710          358 SIH  360 (801)
Q Consensus       358 ~~~  360 (801)
                      ++-
T Consensus       899 ela  901 (1189)
T KOG2041|consen  899 ELA  901 (1189)
T ss_pred             HHH
Confidence            554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.69  E-value=0.035  Score=43.31  Aligned_cols=63  Identities=11%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             HHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710          574 DLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV  636 (801)
Q Consensus       574 ~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  636 (801)
                      .+|.+.+++++|.++++.+.. .| +...|......+...|+++.|...++++++..|+++....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            456777888888888777654 23 4556677777788888888888888888888887765443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.57  E-value=2.1  Score=42.64  Aligned_cols=50  Identities=14%  Similarity=0.087  Sum_probs=23.6

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003710          540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFI  589 (801)
Q Consensus       540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~  589 (801)
                      |.+.|.+..|..-|+.+.+.|.-.|. .+....|+++|...|..++|.+..
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~  235 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA  235 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            44445555555555555544433332 334444445555555555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.56  E-value=0.091  Score=44.79  Aligned_cols=89  Identities=20%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             HHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc----hhHHHHHHHHHHcCCc
Q 003710          575 LLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT----GCYVLLSNMYAEAGRW  648 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~~  648 (801)
                      ++...|++++|++.|.+...  ...+..|+.-..+++-+|+.++|..-+++++++.-+..    ..|+.-+.+|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            45677777777777766532  34566788888888889999999888888888754432    3588889999999999


Q ss_pred             hHHHHHHHHHHHCCC
Q 003710          649 EDVEQIKAIMEKEGL  663 (801)
Q Consensus       649 ~~a~~~~~~m~~~g~  663 (801)
                      ++|+.-|+...+.|-
T Consensus       132 d~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  132 DAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHhHHHHHHhCC
Confidence            999999998887664

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.53  E-value=1  Score=38.76  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 003710          506 AIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQA  585 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA  585 (801)
                      ...|..++..++..+...+.   +..-++-++--...+-+-+-..+.++.+-+-+.+.|- ...-.++..|.+.|...| 
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se-   87 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE-   87 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH-
Confidence            34577777788888877632   3333444443333334445555666655443333321 122334555555554333 


Q ss_pred             HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710          586 KRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK  664 (801)
Q Consensus       586 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~  664 (801)
                                    .....+.+...+|..+.-.+++..+.+.+..++.....++++|.+.|+..++.+++.+.-++|++
T Consensus        88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence                          23445667778888888888998888777778999999999999999999999999999999985

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.51  E-value=0.99  Score=52.95  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             HHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHh
Q 003710          479 IVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST--FVSLLSSCSISGMVDEGWNYFDSM  556 (801)
Q Consensus       479 li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m  556 (801)
                      -.-+|.+||++++|         +.+|...|++.+|+.+..+|..   .-|...  -..|.+-+...++.-+|-++..+.
T Consensus       958 Aal~Ye~~GklekA---------l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  958 AALMYERCGKLEKA---------LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHHhccHHHH---------HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34578999999998         6889999999999999888743   122222  245777788889988888887765


Q ss_pred             HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710          557 RKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMP  593 (801)
Q Consensus       557 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~  593 (801)
                      ..    .|     .--+..|+++..+++|..+.....
T Consensus      1026 ~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1026 LS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             hc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence            43    22     345677888889999998877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.50  E-value=1.4  Score=46.82  Aligned_cols=208  Identities=14%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhc-------CC
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES----TFVSLLSSCSISGMVDEGWNYFDSMRKDY-------GI  562 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------~~  562 (801)
                      +...|+.+..+|...|++++|+..|++.++  +.||..    +|..+..+|.+.|+.++|+..++...+.+       .-
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~  151 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN  151 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence            778899999999999999999999999998  678854    58999999999999999999999887631       11


Q ss_pred             CCCh------HHHHHHHHHHHhcCC-----HHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHH--HHH
Q 003710          563 VPGI------EHYGCIIDLLGRIGN-----LDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAAR--HVL  625 (801)
Q Consensus       563 ~p~~------~~~~~li~~~~~~g~-----~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~--~~~  625 (801)
                      .|+.      ..+..++..+.+.|.     ...-.++..+.. .|-    ...|.++..+    +-+.....+.+  +++
T Consensus       152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~-aPfR~~R~f~y~a~~as----a~ig~~i~~~rl~~a~  226 (453)
T PLN03098        152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQ-APFRGVRKFFYVAFTAA----AGISTFFTVPRLIRAI  226 (453)
T ss_pred             CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHh-chHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            1221      245556666666664     222334444443 222    2333333222    21111111111  111


Q ss_pred             ccCC-------------CCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccC-------CcccEEEECCEEEEEe-cC
Q 003710          626 SSAQ-------------DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKT-------TGCSMFEKNGETHRFI-NQ  684 (801)
Q Consensus       626 ~~~p-------------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~-------~~~s~~~~~~~~~~~~-~~  684 (801)
                      ...+             -+.+....++.+|....+-+++ ++.+..++..+...       .-.+..++.+....++ +|
T Consensus       227 aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG  305 (453)
T PLN03098        227 QGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAG  305 (453)
T ss_pred             cCCCCCccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEEC
Confidence            2111             1344556677777655555554 23333444322111       0122334445555554 56


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCcc
Q 003710          685 DRSHSKTYLIYNVLDILLRKIGEDFYI  711 (801)
Q Consensus       685 ~~~h~~~~~i~~~l~~l~~~~~~~g~~  711 (801)
                      +..|  ..+-....+...+.+.+.|+.
T Consensus       306 ~~e~--v~~al~~ae~~r~~L~~r~Vl  330 (453)
T PLN03098        306 TKES--VTLAMQKAERYRTELLKRGVL  330 (453)
T ss_pred             CHHH--HHHHHHHhHHHHHHHHHcCcE
Confidence            6533  444455667777888888865

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.50  E-value=0.021  Score=45.41  Aligned_cols=68  Identities=16%  Similarity=0.254  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC
Q 003710          567 EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG  646 (801)
Q Consensus       567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g  646 (801)
                      ..|+.+...|.+.|++++|++.+++..            ..+...|+             ..|.-..++..++.+|...|
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al------------~~~~~~~~-------------~~~~~a~~~~~lg~~~~~~g   60 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKAL------------DIEEQLGD-------------DHPDTANTLNNLGECYYRLG   60 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH------------HHHHHTTT-------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHHHHCC-------------CCHHHHHHHHHHHHHHHHcC
Confidence            455666666666666666666665532            00111111             01112446778888888888


Q ss_pred             CchHHHHHHHHHH
Q 003710          647 RWEDVEQIKAIME  659 (801)
Q Consensus       647 ~~~~a~~~~~~m~  659 (801)
                      ++++|.+++++..
T Consensus        61 ~~~~A~~~~~~al   73 (78)
T PF13424_consen   61 DYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8888888877654

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.47  E-value=3.7  Score=42.37  Aligned_cols=294  Identities=17%  Similarity=0.210  Sum_probs=170.4

Q ss_pred             HHHHHHHHh--cCCChHHHHHHHhhc---CCCCcccHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCChh--hHHHH
Q 003710          273 QTSLVDMYG--KCGVVDYAERLFNMI---FPRNIVAWNAMVG--GYVVNAHFLESFSCLRKMLEDDNLNPDCI--TIINL  343 (801)
Q Consensus       273 ~~~li~~y~--~~g~~~~A~~lf~~m---~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~l  343 (801)
                      |.+|-.++.  -.|+-..|+++-.+-   ...|....-.++.  +-.-.|++++|.+-|+.|...    |...  -+..|
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL  160 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL  160 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence            444444433  346777777766553   2234444334433  234568888888888888753    3222  22333


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC-----CCCCHH--HHHHHHHHHHH-
Q 003710          344 LPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM-----IEKNLV--SWNAMIAAYVR-  415 (801)
Q Consensus       344 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~~~~~~--~~~~li~~~~~-  415 (801)
                      .-..-+.|+-+.+++.-+..-..- +.-.-...+++...+..|+++.|.++.+.-     .++|+.  .--.|+.+-+. 
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s  239 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS  239 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence            444456677777777666554432 112345667788888888888888888754     334432  12223332221 


Q ss_pred             --cCCHHHHHHHHHHHhCCCCCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCcccc
Q 003710          416 --NGQNREAMELFQDLWSEPLKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA  492 (801)
Q Consensus       416 --~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  492 (801)
                        .-+...|...-.+..+  +.||.+--. ..-.++.+.|++.++-.|++.+-+..-.|++  .  ++..+.+.|+-...
T Consensus       240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~d  313 (531)
T COG3898         240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALD  313 (531)
T ss_pred             HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHH
Confidence              2344455554444432  556644322 2345677788888888888888776544442  2  22233444433322


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710          493 RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC  571 (801)
Q Consensus       493 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~  571 (801)
                      +                     ++-.+.+..  ++||.. ....+..+-...|++..|..--+...   ...|....|..
T Consensus       314 R---------------------lkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lL  367 (531)
T COG3898         314 R---------------------LKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLL  367 (531)
T ss_pred             H---------------------HHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHH
Confidence            1                     222233333  566644 56667777788888888887766654   45788888888


Q ss_pred             HHHHHHhc-CCHHHHHHHHHhCCCCCCcchHHH
Q 003710          572 IIDLLGRI-GNLDQAKRFIEEMPSAPTARIWGA  603 (801)
Q Consensus       572 li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~  603 (801)
                      |.+.-... |+-.++..++.+....|....|..
T Consensus       368 lAdIeeAetGDqg~vR~wlAqav~APrdPaW~a  400 (531)
T COG3898         368 LADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA  400 (531)
T ss_pred             HHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence            88887654 888888888887765555555553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.39  E-value=3.3  Score=43.50  Aligned_cols=34  Identities=24%  Similarity=0.019  Sum_probs=29.0

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      ....+++.++.-.||.+.|.+++++++++.|+.-
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            3446889999999999999999999999988754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=6.2  Score=44.32  Aligned_cols=352  Identities=10%  Similarity=-0.024  Sum_probs=188.2

Q ss_pred             HHcCCChhHHHHHHHHHH--------HCCCCCCcccHHH-----HHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH
Q 003710          109 FVDNGLFQEAVEFHHRMV--------CEGFKADYFTYPF-----VIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL  175 (801)
Q Consensus       109 ~~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  175 (801)
                      +.+..++++-..+...++        ..|++.+..-|..     +|.-+...+.+..|.++-..+-..-... ..++...
T Consensus       399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W  477 (829)
T KOG2280|consen  399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW  477 (829)
T ss_pred             ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence            334445555444433332        3455555544433     4555566677777777766654221111 4566666


Q ss_pred             HHHHHhcCC---chHHHHhhccCCC--CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCC----CCChhhHHHHHHHHh
Q 003710          176 IVMYMKLGC---VECAERMFDEMPV--RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGL----RYDRFSLISALGAIS  246 (801)
Q Consensus       176 i~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~  246 (801)
                      ..-+.+..+   -+-+..+-+++..  ...++|..+.+-..+.|+.+-|..+++.=...+-    -.+-.-+...+.-+.
T Consensus       478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai  557 (829)
T KOG2280|consen  478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI  557 (829)
T ss_pred             HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence            666666532   2233334444444  5677888888888888888888887764222211    112334556666667


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChhHHHHHHH
Q 003710          247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVNAHFLESFSCLR  325 (801)
Q Consensus       247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~  325 (801)
                      ..|+.+...+++-++.+.-.   ...+...+      .+.-.|..++..... .|..    -+..+.+.++-.+++.-|.
T Consensus       558 es~d~~Li~~Vllhlk~~~~---~s~l~~~l------~~~p~a~~lY~~~~r~~~~~----~l~d~y~q~dn~~~~a~~~  624 (829)
T KOG2280|consen  558 ESGDTDLIIQVLLHLKNKLN---RSSLFMTL------RNQPLALSLYRQFMRHQDRA----TLYDFYNQDDNHQALASFH  624 (829)
T ss_pred             hcCCchhHHHHHHHHHHHHH---HHHHHHHH------HhchhhhHHHHHHHHhhchh----hhhhhhhcccchhhhhhhh
Confidence            77777776666655543310   00000000      112223333332211 1110    0111122222222222221


Q ss_pred             HHH--h---CCCCCCChhhHHHHHHHHhccCChHHHHHHHH----------HHH-HhCCCCchhHHHHHHHHHHccCChH
Q 003710          326 KML--E---DDNLNPDCITIINLLPSCTKLGALLEGKSIHG----------YAI-RKGFLPNVALETALIDMYAGSGALK  389 (801)
Q Consensus       326 ~m~--~---~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~----------~~~-~~g~~~~~~~~~~Li~~y~k~g~~~  389 (801)
                      .=.  .   ..|..|+..   ..-++|++........+..+          .+. +.|.....-+.+--+.-+...|+..
T Consensus       625 ~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k  701 (829)
T KOG2280|consen  625 LQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK  701 (829)
T ss_pred             hhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence            100  0   013333332   33344444433222111111          111 1233333334444455566789999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCC
Q 003710          390 MTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGL  469 (801)
Q Consensus       390 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~  469 (801)
                      +|.++-.+..-+|-..|---+.+++..+++++-+++-+.+..      ..-|.-+..+|.+.|+.++|...+.....   
T Consensus       702 ~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---  772 (829)
T KOG2280|consen  702 RAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---  772 (829)
T ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC---
Confidence            999999999888888888889999999999988877776642      45577788899999999999887654321   


Q ss_pred             CCchHHHHHHHHHHHhcCCcccc
Q 003710          470 VSNIYISNSIVYMYAKCGDLQTA  492 (801)
Q Consensus       470 ~~~~~~~~~li~~y~~~g~~~~A  492 (801)
                            +.-.+.+|.++|++.+|
T Consensus       773 ------l~ekv~ay~~~~~~~eA  789 (829)
T KOG2280|consen  773 ------LQEKVKAYLRVGDVKEA  789 (829)
T ss_pred             ------hHHHHHHHHHhccHHHH
Confidence                  11467788888888777

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.74  Score=44.57  Aligned_cols=139  Identities=9%  Similarity=0.120  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH---
Q 003710          303 AWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALI---  379 (801)
Q Consensus       303 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li---  379 (801)
                      ..+.++..+.-.|.+.-.+..+.+..+. .-+.++.....+.+...+.|+.+.+...++...+..-..|....+.++   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            4456777777778888888888888876 556667777778888888899999999998887754444444444333   


Q ss_pred             --HHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHH
Q 003710          380 --DMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASI  444 (801)
Q Consensus       380 --~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l  444 (801)
                        ..|.-.++..+|...|++++..   |++.-|.-.-+..-.|+..+|++..+.|.+.  .|...+-.++
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence              3455667888888888877654   5566666555666678889999999999874  4555544444

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.03  E-value=0.26  Score=43.06  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMR---------------EKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY  560 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~---------------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~  560 (801)
                      .++.++|.++++.|+.+....+++..=               ...+.|+..+..+++.+|+..|++..|.++.+...+.|
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344555666666666555555554321               11233555555555555555555555555555555555


Q ss_pred             CCCCChHHHHHH
Q 003710          561 GIVPGIEHYGCI  572 (801)
Q Consensus       561 ~~~p~~~~~~~l  572 (801)
                      ++.-....|..|
T Consensus        83 ~I~i~~~~W~~L   94 (126)
T PF12921_consen   83 PIPIPKEFWRRL   94 (126)
T ss_pred             CCCCCHHHHHHH
Confidence            544333333333

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.02  E-value=0.57  Score=49.84  Aligned_cols=153  Identities=18%  Similarity=0.109  Sum_probs=94.8

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 003710          507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAK  586 (801)
Q Consensus       507 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~  586 (801)
                      +..+.+.-+++-++.++  +.||-.+-..|+ +--.+..+.++.++|++..+. |    ...+..- ......|..   .
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~  247 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---W  247 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---h
Confidence            45566666777787777  678766544433 333455688999998887653 1    0000000 000011111   1


Q ss_pred             HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710          587 RFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD--NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK  664 (801)
Q Consensus       587 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~  664 (801)
                      +.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|.  +..+...|+..|...+++.|+..++.+-.+..+.
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            11111111233444456777888999999999999999987775  4567889999999999999999999887655554


Q ss_pred             cCCcccE
Q 003710          665 KTTGCSM  671 (801)
Q Consensus       665 ~~~~~s~  671 (801)
                      |...++|
T Consensus       328 kSAti~Y  334 (539)
T PF04184_consen  328 KSATICY  334 (539)
T ss_pred             chHHHHH
Confidence            4444433

The molecular function of this protein is uncertain.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.15  Score=52.56  Aligned_cols=63  Identities=13%  Similarity=-0.029  Sum_probs=56.0

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      ..+..|...+.+.+++..|.+...++++++|+|...+..-+.+|...|.++.|+..|+++.+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            355667777888899999999999999999999999999999999999999999999998874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.82  Score=47.42  Aligned_cols=95  Identities=9%  Similarity=-0.025  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      ...+..|.-+|.+.+++.+|++..++...  ++|.-..-.=..+|...|+++.|+..++++++++|.|..+-..|+.+--
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34566778888999999999998887754  3555555555678899999999999999999999999988888887777


Q ss_pred             HcCCchHH-HHHHHHHHH
Q 003710          644 EAGRWEDV-EQIKAIMEK  660 (801)
Q Consensus       644 ~~g~~~~a-~~~~~~m~~  660 (801)
                      +..+..+. .++|..|-.
T Consensus       337 k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            76666554 677777754

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.47  E-value=1.2  Score=40.03  Aligned_cols=125  Identities=16%  Similarity=0.268  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003710          442 ASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEM  521 (801)
Q Consensus       442 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m  521 (801)
                      ..++..+...+.......+++.+.+.+ ..+..++|.++.+|++.+.                       .+.++.++. 
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-----------------------~~ll~~l~~-   65 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-----------------------QKEIERLDN-   65 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-----------------------HHHHHHHHh-
Confidence            345555555566666666666666555 3555566667766665321                       222333331 


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCcch
Q 003710          522 REKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRI-GNLDQAKRFIEEMPSAPTARI  600 (801)
Q Consensus       522 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~  600 (801)
                           .++......++..|.+.+.++++..++..+..          |...++.+... ++.+.|.+++.+-   .+...
T Consensus        66 -----~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~l  127 (140)
T smart00299       66 -----KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPEL  127 (140)
T ss_pred             -----ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHH
Confidence                 23344455577888888888888888776531          22233444444 7788888887762   35557


Q ss_pred             HHHHHHHHH
Q 003710          601 WGALLTASR  609 (801)
Q Consensus       601 ~~~ll~~~~  609 (801)
                      |..++..|.
T Consensus       128 w~~~~~~~l  136 (140)
T smart00299      128 WAEVLKALL  136 (140)
T ss_pred             HHHHHHHHH
Confidence            777776654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.43  E-value=0.14  Score=40.50  Aligned_cols=59  Identities=17%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710          533 FVSLLSSCSISGMVDEGWNYFDSMRKD---YGI-VPG-IEHYGCIIDLLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~eA~~~~~~  591 (801)
                      +..+...+...|++++|+.+|+...+.   +|- .|+ ..++..|..+|.+.|++++|++++++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444445555544444443321   110 111 44566666667777777777766654

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.37  E-value=0.71  Score=46.03  Aligned_cols=109  Identities=12%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc---CCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSIS---GMVDEGWNYFDSMRKDYGIVPG-IEH  568 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~-~~~  568 (801)
                      |...|-.|...|..+|++..|..-|.+..+  +.|| ...+..+..++..+   ..-.++..+|+++.+   ..|+ +..
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira  229 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA  229 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence            556788888888888888888888888777  3443 44455555554433   235677778887763   4554 666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHH
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTA  607 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~  607 (801)
                      ...|...+...|++.+|...++.|.. -|....|..++..
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            77777777778888888877777764 3555566665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.37  E-value=3.9  Score=39.48  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=26.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHhCCCCCC--CHhhHHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710          411 AAYVRNGQNREAMELFQDLWSEPLKP--DAMTFASILPAYAEIATLSDSMQIHSLITK  466 (801)
Q Consensus       411 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~  466 (801)
                      ..+.+.|++.+|.+.|+++...-...  -....-.+..++.+.|+++.|...++.+++
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33445566666666666665431100  011223344555556666666666665554

>PRK11906 transcriptional regulator; Provisional

Probab=94.33  E-value=0.58  Score=49.72  Aligned_cols=62  Identities=6%  Similarity=-0.016  Sum_probs=34.8

Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710          597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      |+.....+..+....|+.+.|...+++++.++|+.+.++...+.+..-+|+.++|.+.+++.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444444455555666666666666666666666666666666666666666555553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.29  E-value=2  Score=41.54  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710          500 VIIMAYAIHGLGKISIQLFSEMREKGIKPN----ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL  575 (801)
Q Consensus       500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~  575 (801)
                      .....+.+.|++.+|++.|+++...-  |+    ......+..++.+.|++++|...++.+.+.+.-.|.. .+.....+
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g   86 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLG   86 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHH
Confidence            34556678899999999999988742  32    2345667778888999999999999988876555542 12222211


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc-----------------hhHHHH
Q 003710          576 LGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT-----------------GCYVLL  638 (801)
Q Consensus       576 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l  638 (801)
                      .+.-.......      ..             .+..+....|...++.+++.-|++.                 ..-..+
T Consensus        87 ~~~~~~~~~~~------~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   87 LSYYKQIPGIL------RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             HHHHHHHHHHH-------T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccch------hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111010000      00             1111223344444444444444432                 123457


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHC
Q 003710          639 SNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       639 ~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +..|.+.|+|..|..-++.+.+.
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHH
Confidence            88999999999999999988764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.28  E-value=0.55  Score=47.53  Aligned_cols=162  Identities=9%  Similarity=0.027  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMRE-KGIKPNE---STFVSLLSSCSISGMVDEGWNYFDSMRKDYGI--VPG--IE  567 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~  567 (801)
                      .+|-.+..++-+.-++.+++.+-+.-.. .|..|..   ....++..|....+.++++++.|+...+--.-  .|.  ..
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            3455555666555555565555443332 2333321   22333455566666788888888876542111  121  56


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCch
Q 003710          568 HYGCIIDLLGRIGNLDQAKRFIEEM-------PSAPT-----ARIWGALLTASRKNNDIVSAEFAARHVLSS--AQDNTG  633 (801)
Q Consensus       568 ~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~  633 (801)
                      +|..|...|++..++++|.-+..+.       ..+.-     ..+.-.+.-+++..|.+..|.+..+++.++  .-.|..
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            7888999999999888876554433       21111     112223445678888888888877777653  233333


Q ss_pred             ----hHHHHHHHHHHcCCchHHHHHHHH
Q 003710          634 ----CYVLLSNMYAEAGRWEDVEQIKAI  657 (801)
Q Consensus       634 ----~~~~l~~~y~~~g~~~~a~~~~~~  657 (801)
                          ....++++|...|+.|.|..-++.
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence                445788999999988777665543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.26  E-value=4.4  Score=37.25  Aligned_cols=123  Identities=14%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003710          459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS  538 (801)
Q Consensus       459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  538 (801)
                      +....+.+.+++++..++..+|+.+.+.|+                          ...+.+++..++-||.......+-
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~--------------------------~~~L~qllq~~Vi~DSk~lA~~LL   68 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ--------------------------FSQLHQLLQYHVIPDSKPLACQLL   68 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--------------------------HHHHHHHHhhcccCCcHHHHHHHH
Confidence            344555577888888888888888887776                          334567778888888887766664


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 003710          539 SCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV  615 (801)
Q Consensus       539 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~  615 (801)
                      ....  ....+.++=-.|.++.     ...+..+++.+...|++-+|+++..+... -+...-.-++.+-...+|..
T Consensus        69 s~~~--~~~~~~Ql~lDMLkRL-----~~~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~  137 (167)
T PF07035_consen   69 SLGN--QYPPAYQLGLDMLKRL-----GTAYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQ  137 (167)
T ss_pred             HhHc--cChHHHHHHHHHHHHh-----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHH
Confidence            4333  3333333333333321     11567788899999999999999987542 22223344555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.19  E-value=0.48  Score=42.98  Aligned_cols=72  Identities=17%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR----KDYGIVPGIEHY  569 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~  569 (801)
                      ....++..+...|++++|+++.+.+.... +-|...+..++.++...|+..+|.++|+.+.    +++|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            45567777888999999999999999842 3356689999999999999999999998764    356888886543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.94  E-value=3.1  Score=44.57  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=55.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCc--chHHHHHHHHHh
Q 003710          535 SLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTA--RIWGALLTASRK  610 (801)
Q Consensus       535 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~--~~~~~ll~~~~~  610 (801)
                      .|..++-+.|+.+||.+.|++|.+++...-...+...|+..|...+++.++..++.+-..  -|..  ..|++.+-..+.
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            344455566777777777777765432222244555677777777777777777766542  1332  334443333333


Q ss_pred             cCCH---------------HHHHHHHHHHHccCCCCch
Q 003710          611 NNDI---------------VSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       611 ~g~~---------------~~a~~~~~~~~~~~p~~~~  633 (801)
                      .+|.               ..|.++..++++.+|..+.
T Consensus       344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            3331               2355677888888875543

The molecular function of this protein is uncertain.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.83  E-value=0.46  Score=48.82  Aligned_cols=260  Identities=11%  Similarity=0.090  Sum_probs=128.2

Q ss_pred             HHHHhCCChhHHHHHHHHHHhCCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHH
Q 003710          309 GGYVVNAHFLESFSCLRKMLEDDNLNPDCI----TIINLLPSCTKLGALLEGKSIHGYAIR--K--GFL-PNVALETALI  379 (801)
Q Consensus       309 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li  379 (801)
                      .-+++.|+....+.+|+...+. |. -|..    .|..+-+++.-.+++++|.+.|..=+.  .  |-. -.......|-
T Consensus        25 ERLck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            3478899999999999988876 43 2333    355566677777888888888754321  1  111 1122222333


Q ss_pred             HHHHccCChHHHHHHHhc-C------CCC--CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHh
Q 003710          380 DMYAGSGALKMTEKLFGS-M------IEK--NLVSWNAMIAAYVRNGQ--------------------NREAMELFQDLW  430 (801)
Q Consensus       380 ~~y~k~g~~~~A~~~f~~-~------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~  430 (801)
                      +.+--.|.+++|.-.-.+ +      -++  ....+-.+...|...|+                    ++.|.++|.+=+
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            344445666666543322 1      000  01112223333333221                    122333332211


Q ss_pred             C----CCCC-CCHhhHHHHHHHHHhhcChhhHHHHHHHHH----HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHH
Q 003710          431 S----EPLK-PDAMTFASILPAYAEIATLSDSMQIHSLIT----KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVI  501 (801)
Q Consensus       431 ~----~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~l  501 (801)
                      +    .|-. .-...|..|-..|.-.|+++.+...|+.-.    +.|-                     .|..-..+..+
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------------------rAaeRRA~sNl  241 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------------------RAAERRAHSNL  241 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHhhccc
Confidence            1    1100 011223333333444556666665555322    1121                     11123345556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHH---hc-CCCCChHHHHHH
Q 003710          502 IMAYAIHGLGKISIQLFSEMREK----GIK-PNESTFVSLLSSCSISGMVDEGWNYFDSMRK---DY-GIVPGIEHYGCI  572 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l  572 (801)
                      ..++.-.|+++.|++.|+.-...    |-+ .......+|.++|.-...+++|+.++..-..   +. ...-....|.+|
T Consensus       242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL  321 (639)
T KOG1130|consen  242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL  321 (639)
T ss_pred             chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            66666677777777776654322    211 1233455666666666677777777654221   11 111225566677


Q ss_pred             HHHHHhcCCHHHHHHHHHh
Q 003710          573 IDLLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~  591 (801)
                      ..+|...|..++|+.+.+.
T Consensus       322 gna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  322 GNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            7777777777777766554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.66  E-value=1.6  Score=42.73  Aligned_cols=81  Identities=11%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710          459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIH-GLGKISIQLFSEMREKGIKPNESTFVSLL  537 (801)
Q Consensus       459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  537 (801)
                      ..++.|.+.|+.-|..+|+.|++.+-|..-+..       |..-..+..- .+-+-+++++++|...|+.||..+-..|+
T Consensus        93 ~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~-------nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv  165 (406)
T KOG3941|consen   93 TALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ-------NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV  165 (406)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhCcccccccH-------HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence            344556666666666666666665554322211       1111111111 12234688999999999999999988899


Q ss_pred             HHHhccCCH
Q 003710          538 SSCSISGMV  546 (801)
Q Consensus       538 ~a~~~~g~~  546 (801)
                      +++.+.+-.
T Consensus       166 n~FGr~~~p  174 (406)
T KOG3941|consen  166 NAFGRWNFP  174 (406)
T ss_pred             HHhcccccc
Confidence            998887653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.61  E-value=2.1  Score=46.64  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             HHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHH
Q 003710          380 DMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQ  459 (801)
Q Consensus       380 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~  459 (801)
                      +...++|+++.|.++-++..  +...|..|.....++|+.+-|.+.|++..+         |..|+-.+.-.|+.+.-.+
T Consensus       326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k  394 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK  394 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence            34457788888888876655  556888888888888888888888888753         5566666777777777666


Q ss_pred             HHHHHHHhC
Q 003710          460 IHSLITKLG  468 (801)
Q Consensus       460 i~~~~~~~g  468 (801)
                      +.+.....|
T Consensus       395 l~~~a~~~~  403 (443)
T PF04053_consen  395 LAKIAEERG  403 (443)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcc
Confidence            666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=93.59  E-value=0.54  Score=41.12  Aligned_cols=47  Identities=11%  Similarity=-0.011  Sum_probs=23.5

Q ss_pred             CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 003710          299 RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP  345 (801)
Q Consensus       299 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~  345 (801)
                      |+.....+++.+|+.+|++..|+++.+...+..+++.+..++..|+.
T Consensus        50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            34444455555555555555555555555444444444444544444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.52  E-value=3.3  Score=45.79  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChH
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNE-----STFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIE  567 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~  567 (801)
                      ...+++...-.|+-+.+++++.+-.+.+ +.-..     .+|..++..+..    ....+.+.++++.+.+.|   |+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence            3445666666788888888888765532 22111     123333333332    457888999999998664   7755


Q ss_pred             HHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH-HHH
Q 003710          568 HYGC-IIDLLGRIGNLDQAKRFIEEMPS-A-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV-LLS  639 (801)
Q Consensus       568 ~~~~-li~~~~~~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~  639 (801)
                      .|.. -...+...|++++|.+.+++... +     -....+--+...+....++++|...+..+.+.+......|. ..+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            5543 34667788999999999997543 1     11222333455567788999999999999988777666665 456


Q ss_pred             HHHHHcCCc-------hHHHHHHHHHHH
Q 003710          640 NMYAEAGRW-------EDVEQIKAIMEK  660 (801)
Q Consensus       640 ~~y~~~g~~-------~~a~~~~~~m~~  660 (801)
                      -.|...|+.       ++|.+++.+...
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            677888888       788888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=93.34  E-value=2.5  Score=45.07  Aligned_cols=141  Identities=11%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHH-HCCCCCCHHH-HHHHHHHHh---------ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh
Q 003710          511 GKISIQLFSEMR-EKGIKPNEST-FVSLLSSCS---------ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGR  578 (801)
Q Consensus       511 ~~~A~~l~~~m~-~~g~~p~~~t-~~~ll~a~~---------~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~  578 (801)
                      .+.|+.+|.+.. .+.+.|+-.. |..+-.++.         ......+|.++-+...   .+.|+ ......+..++.-
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence            456788999988 2236777543 333222211         1234556666666555   45554 7777788888888


Q ss_pred             cCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH--HHHHHHHHcCCchHHHHH
Q 003710          579 IGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV--LLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       579 ~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~y~~~g~~~~a~~~  654 (801)
                      .|+++.|..+|++... .|| +..|......+.-.|+.++|.+..++.++++|.-..+-+  ..+++|+..+ .++|.++
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~  429 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL  429 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence            8999999999998765 565 466777777788899999999999999999998655433  4455676654 5666665


Q ss_pred             H
Q 003710          655 K  655 (801)
Q Consensus       655 ~  655 (801)
                      +
T Consensus       430 ~  430 (458)
T PRK11906        430 Y  430 (458)
T ss_pred             H
Confidence            5

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.18  E-value=0.42  Score=46.62  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=66.1

Q ss_pred             HHHhhCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCC-------------
Q 003710           89 YLFEKMS--YLDTYIWNVVIRGFVDN-----GLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLL-------------  148 (801)
Q Consensus        89 ~~f~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------------  148 (801)
                      ..|...+  ++|-.+|-.++..+...     +..+-....+..|.+.|+.-|..+|+.||+.+-+-.             
T Consensus        55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H  134 (406)
T KOG3941|consen   55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH  134 (406)
T ss_pred             hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence            3444444  45666666666665532     455556667788888888888888988887765422             


Q ss_pred             ---ChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710          149 ---YLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC  184 (801)
Q Consensus       149 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  184 (801)
                         ...-+..++++|...|+.||..+-..|++++.+.+-
T Consensus       135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence               234467788888888888888888888888776654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.10  E-value=5.1  Score=34.72  Aligned_cols=135  Identities=13%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             HcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHH---HHHHHHHHHhcCCccc
Q 003710          415 RNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYI---SNSIVYMYAKCGDLQT  491 (801)
Q Consensus       415 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~  491 (801)
                      -.|..++..++..+....   .+..-++.++--....-+-+...++++.+   |-.-|...   ...++..|.+.|...+
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~se   87 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKLSE   87 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---H
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcchHH
Confidence            346666677777766542   23344455444333333333333333333   22222222   1345666666665544


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 003710          492 ARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI  562 (801)
Q Consensus       492 A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~  562 (801)
                      -     ....+......|+-++-.+++.++... -+|++.....+..||.+.|+..++.+++....+. |+
T Consensus        88 ~-----vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~  151 (161)
T PF09205_consen   88 Y-----VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL  151 (161)
T ss_dssp             H-----HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred             H-----HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence            3     344567777888888888888887652 3677777888888888888888888888887764 43

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=20  Score=40.81  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHH
Q 003710          271 MVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLES  320 (801)
Q Consensus       271 ~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A  320 (801)
                      .+....|+.+.-.|++++|..+.-.|...+..-|.-.+.-+...++....
T Consensus       393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I  442 (846)
T KOG2066|consen  393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI  442 (846)
T ss_pred             HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence            35556666677777777777777777776777776666666666655443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=3.9  Score=40.79  Aligned_cols=117  Identities=14%  Similarity=0.149  Sum_probs=86.7

Q ss_pred             HHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH------HHHHHHh
Q 003710          538 SSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGA------LLTASRK  610 (801)
Q Consensus       538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~------ll~~~~~  610 (801)
                      ......|+..++...|+.....   .|. ...-..|+.+|...|+.++|..++..+|.+-...-|..      ++.-...
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            3566789999999999988753   333 67778899999999999999999999987533333333      3333333


Q ss_pred             cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      .++...    ++.-+..+|+|...-..|+..|-..|+.++|.+.+=.+..+
T Consensus       219 ~~~~~~----l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         219 TPEIQD----LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             CCCHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            333332    33445679999999999999999999999999977666554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.93  E-value=9.3  Score=36.86  Aligned_cols=156  Identities=17%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHH
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS-SCSISGMVDEGWNYFDSMRKDYGIVP----GIEHYGCIIDLL  576 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~  576 (801)
                      ...+...+....+++.+.........+. ........ .+...|+++++...+.....   ..|    ....+......+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  177 (291)
T COG0457         102 GLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALL  177 (291)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHH
Confidence            3334444445555666665555322221 11111122 55666666666666666532   222    233334444445


Q ss_pred             HhcCCHHHHHHHHHhCCC-CCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHH
Q 003710          577 GRIGNLDQAKRFIEEMPS-APT--ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQ  653 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~m~~-~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~  653 (801)
                      ...++.++|...+.+... .++  ...+..+...+...++.+.+...+...++..|.....+..+...+...|.++++..
T Consensus       178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence            566677777766665543 222  45566666666777777777777777777777655566666666666666777777


Q ss_pred             HHHHHHHC
Q 003710          654 IKAIMEKE  661 (801)
Q Consensus       654 ~~~~m~~~  661 (801)
                      .+......
T Consensus       258 ~~~~~~~~  265 (291)
T COG0457         258 ALEKALEL  265 (291)
T ss_pred             HHHHHHHh
Confidence            76666543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.93  E-value=1.7  Score=38.56  Aligned_cols=57  Identities=19%  Similarity=0.157  Sum_probs=36.1

Q ss_pred             HhcCCHHHHHHHHHhCCCC-C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          577 GRIGNLDQAKRFIEEMPSA-P----TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      .+.|++++|.+.|+.+... |    ....-..|+.++.+.|+++.|...+++.++++|.++.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            3455566666555554321 1    1233445667777888888888888888888887654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.60  E-value=0.92  Score=44.67  Aligned_cols=87  Identities=24%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710          506 AIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG  580 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g  580 (801)
                      .+.|++.+|...|...++..  |+.    ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--|.....+.|
T Consensus       152 ~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            34566777788888777742  321    23444677777788888888888887777766665 466666667777777


Q ss_pred             CHHHHHHHHHhCCC
Q 003710          581 NLDQAKRFIEEMPS  594 (801)
Q Consensus       581 ~~~eA~~~~~~m~~  594 (801)
                      +.++|...+++...
T Consensus       230 ~~d~A~atl~qv~k  243 (262)
T COG1729         230 NTDEACATLQQVIK  243 (262)
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777666666543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.59  E-value=1.2  Score=42.02  Aligned_cols=153  Identities=22%  Similarity=0.318  Sum_probs=89.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCC
Q 003710          505 YAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL--LGRIGN  581 (801)
Q Consensus       505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~  581 (801)
                      |-..|-..-|.-=|.+...  +.|+.. .|+-|.--+...|+++.|.+.|+...   .+.|. ..|..+-.+  +.-.|+
T Consensus        75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~-y~Ya~lNRgi~~YY~gR  148 (297)
T COG4785          75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPT-YNYAHLNRGIALYYGGR  148 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCc-chHHHhccceeeeecCc
Confidence            4455555555555666555  778755 57777777888999999999999876   45564 223333222  223577


Q ss_pred             HHHHHH----HHHhCCCCCCcchHHHHHHH--------------HHhcCCHHHH-------------HHHHHHHHccCCC
Q 003710          582 LDQAKR----FIEEMPSAPTARIWGALLTA--------------SRKNNDIVSA-------------EFAARHVLSSAQD  630 (801)
Q Consensus       582 ~~eA~~----~~~~m~~~p~~~~~~~ll~~--------------~~~~g~~~~a-------------~~~~~~~~~~~p~  630 (801)
                      ++-|.+    +++.=+..|-...|.-|...              +..+.+-..+             +.+++++.+...+
T Consensus       149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~  228 (297)
T COG4785         149 YKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATD  228 (297)
T ss_pred             hHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence            766654    44444444544455433321              1111111111             1223333322222


Q ss_pred             C-------chhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          631 N-------TGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       631 ~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +       ..+|.-|+.-|-..|..++|..+|+.....++
T Consensus       229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            2       45788999999999999999999998766443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.42  E-value=12  Score=36.79  Aligned_cols=144  Identities=13%  Similarity=0.126  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI-K-PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC  571 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~  571 (801)
                      .+..|-.=+..-.+.|++++|.+.|+.+..+-. . -...+...++-+..+.+++++|....++..+.|+-.|+.. |..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHH
Confidence            344555556666778888888888888876421 1 1234566677777888888888888888887776666632 333


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------ch
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN-----------------TG  633 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~  633 (801)
                      .+.++..          +..... ..|.             .-...|...++.+++.-|++                 .+
T Consensus       112 YlkgLs~----------~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~  168 (254)
T COG4105         112 YLKGLSY----------FFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG  168 (254)
T ss_pred             HHHHHHH----------hccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence            3333331          111110 0000             00112333333334433432                 22


Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710          634 CYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       634 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      .=...++.|.+.|.|..|..-++.|.+.
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            2347789999999999999999999875

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.40  E-value=5.8  Score=35.49  Aligned_cols=85  Identities=13%  Similarity=0.004  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChh
Q 003710          138 PFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGV  217 (801)
Q Consensus       138 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~  217 (801)
                      ..++..+...+........++.+++.+ ..+...+|.++..|++... .+....++.  ..+......+++.|.+.+.++
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~   86 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYE   86 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence            344555555555556666666666555 2455566667777766432 233333331  123333444555555555555


Q ss_pred             hHHHHHHHH
Q 003710          218 SSLVFFKEM  226 (801)
Q Consensus       218 ~A~~l~~~m  226 (801)
                      ++.-++.++
T Consensus        87 ~~~~l~~k~   95 (140)
T smart00299       87 EAVELYKKD   95 (140)
T ss_pred             HHHHHHHhh
Confidence            555555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.21  E-value=1.9  Score=46.97  Aligned_cols=133  Identities=18%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             HHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 003710          504 AYAIHGLGKISIQLFSE-MREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNL  582 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  582 (801)
                      .....|+++++.++.+. -.-..+ | ..-...++.-+-+.|..+.|+++-..-..             =-++..+.|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence            34456777777666641 111112 2 33466777777888999999887544332             23566789999


Q ss_pred             HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          583 DQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       583 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      +.|.++.++..   +...|..|......+||++.|++.+++.        .-+..|.-+|...|+.+.-.++-+....+|
T Consensus       335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            99998887654   6779999999999999999999998874        346678888899999888877777776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.11  E-value=25  Score=39.95  Aligned_cols=76  Identities=11%  Similarity=0.076  Sum_probs=47.6

Q ss_pred             hhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 003710          169 VYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISI  247 (801)
Q Consensus       169 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  247 (801)
                      ..++...|+.|.-.|++++|-.+.-.|...+..-|---+.-+...++......+   +....-+.+...|-.+|..+..
T Consensus       392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence            346777777787888888888887777777777777777777776665443322   2221122344456666665544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.86  E-value=4.7  Score=36.53  Aligned_cols=91  Identities=26%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCH
Q 003710          537 LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNNDI  614 (801)
Q Consensus       537 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~  614 (801)
                      +..-.+.++.+++..++..+.   -+.|. .++-..-...+.+.|+|.+|..+++++... |....-.+|+..|.....-
T Consensus        17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            344456778899999998886   56777 555555667788999999999999998754 5555566777777655433


Q ss_pred             HHHHHHHHHHHccCCC
Q 003710          615 VSAEFAARHVLSSAQD  630 (801)
Q Consensus       615 ~~a~~~~~~~~~~~p~  630 (801)
                      ..=...++++++..++
T Consensus        94 ~~Wr~~A~evle~~~d  109 (160)
T PF09613_consen   94 PSWRRYADEVLESGAD  109 (160)
T ss_pred             hHHHHHHHHHHhcCCC
Confidence            3334445556665553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.07  E-value=0.41  Score=30.39  Aligned_cols=32  Identities=19%  Similarity=0.046  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDN  631 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  631 (801)
                      .|..+...+...|++++|++.++++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            34555566666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=90.99  E-value=7.3  Score=35.48  Aligned_cols=86  Identities=7%  Similarity=-0.038  Sum_probs=42.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 003710          505 YAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLD  583 (801)
Q Consensus       505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~  583 (801)
                      +.+.|++++|..+|+-+...  .|... -+..|..+|-..+.+++|...|.....- . .-|...+-.+..+|...|+.+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence            34556666666666655542  22222 2333333444456666666666554321 1 112333334455556666666


Q ss_pred             HHHHHHHhCCC
Q 003710          584 QAKRFIEEMPS  594 (801)
Q Consensus       584 eA~~~~~~m~~  594 (801)
                      +|.+.|+....
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            66665555443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.68  E-value=2  Score=47.43  Aligned_cols=143  Identities=20%  Similarity=0.223  Sum_probs=101.9

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHH----hcCCHHHH
Q 003710          515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI-----EHYGCIIDLLG----RIGNLDQA  585 (801)
Q Consensus       515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~----~~g~~~eA  585 (801)
                      .-+|+-++.. ++|   .+..+++...-.|+-+.|++.+....+..++.-..     -.|..++..+.    .....++|
T Consensus       177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a  252 (468)
T PF10300_consen  177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA  252 (468)
T ss_pred             HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence            4455656552 333   45556777777899999999998876644443322     22333333332    25678999


Q ss_pred             HHHHHhCCCC-CCcchHHHHHH-HHHhcCCHHHHHHHHHHHHccCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          586 KRFIEEMPSA-PTARIWGALLT-ASRKNNDIVSAEFAARHVLSSAQ----DNTGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       586 ~~~~~~m~~~-p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      .++++.+... |+...|.-.-+ .++..|+.+.|.+.++++++...    -..-.+.-+++.+.-.++|++|.+.+..+.
T Consensus       253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~  332 (468)
T PF10300_consen  253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL  332 (468)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence            9999999863 89888875554 46789999999999998774322    134567789999999999999999999998


Q ss_pred             HC
Q 003710          660 KE  661 (801)
Q Consensus       660 ~~  661 (801)
                      +.
T Consensus       333 ~~  334 (468)
T PF10300_consen  333 KE  334 (468)
T ss_pred             hc
Confidence            74

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.61  E-value=0.35  Score=30.82  Aligned_cols=31  Identities=19%  Similarity=-0.025  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQD  630 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  630 (801)
                      +|..+...+...|+.++|+..++++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4666666677777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.57  E-value=12  Score=42.87  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710          410 IAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY  448 (801)
Q Consensus       410 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~  448 (801)
                      ...+.-.|+++.|++++-+  ..+...|.+.+...|..+
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~  301 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY  301 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence            3455667999999998887  334556667666655544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.51  E-value=8.9  Score=39.30  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHh--h----cChhhHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCc
Q 003710          419 NREAMELFQDLWSEPLKPDAMTFASILPAYAE--I----ATLSDSMQIHSLITKLGL---VSNIYISNSIVYMYAKCGDL  489 (801)
Q Consensus       419 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~  489 (801)
                      +++.+.+++.|.+.|++-+..+|.+.+.....  .    .....+..+|+.|.+...   .++-.++.+|+.+  ...++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34567788889999999888887764433333  1    235678899999996532   1333444444332  22222


Q ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc-cCC--HHHHHHHHHHhHHhcCCCCC
Q 003710          490 QTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSI-SGM--VDEGWNYFDSMRKDYGIVPG  565 (801)
Q Consensus       490 ~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~  565 (801)
                      +.-                  .+.+..+|+.+.+.|+..+.. -+.+-+-++.. ...  +..+.++++.+.+. |+++.
T Consensus       156 e~l------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik  216 (297)
T PF13170_consen  156 EEL------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIK  216 (297)
T ss_pred             HHH------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccc
Confidence            222                  355678889999888876544 34443333333 222  45788889999876 99998


Q ss_pred             hHHHHHHHHHHHhcC
Q 003710          566 IEHYGCIIDLLGRIG  580 (801)
Q Consensus       566 ~~~~~~li~~~~~~g  580 (801)
                      ..+|..+.-+-.-.+
T Consensus       217 ~~~yp~lGlLall~~  231 (297)
T PF13170_consen  217 YMHYPTLGLLALLED  231 (297)
T ss_pred             cccccHHHHHHhcCC
Confidence            888887655443333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.44  E-value=25  Score=42.05  Aligned_cols=256  Identities=13%  Similarity=0.054  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHcCC--ChHHHHHHHhhCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHh
Q 003710           70 TKTRALQELVSSG--SMESACYLFEKMSY-LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACA  145 (801)
Q Consensus        70 ~~~~l~~~~~~~g--~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~  145 (801)
                      +...+|..|.+.+  .++.|+....+... +...+-...+..++-   +-.+-.+|+....      .+-+. +++-+-.
T Consensus       792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~---Lvdvn~lfn~ALg------tYDl~Lal~VAq~  862 (1265)
T KOG1920|consen  792 FNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLF---LVDVNELFNSALG------TYDLDLALLVAQK  862 (1265)
T ss_pred             hhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHh---hccHHHHHHhhhc------ccchHHHHHHHHH
Confidence            3338999999987  77888887777653 212222222222221   1222233333221      00111 1122223


Q ss_pred             cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHH
Q 003710          146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKE  225 (801)
Q Consensus       146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~  225 (801)
                      ...|+.+-.-+++.+.+.....-.+    .|+.|  .+++++|+.-+.++.   ...|+-.++---+.|.+.+|+.++  
T Consensus       863 SqkDPkEyLP~L~el~~m~~~~rkF----~ID~~--L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--  931 (1265)
T KOG1920|consen  863 SQKDPKEYLPFLNELKKMETLLRKF----KIDDY--LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--  931 (1265)
T ss_pred             hccChHHHHHHHHHHhhchhhhhhe----eHHHH--HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--
Confidence            3445555455554444321100001    12222  245666666655554   345666666667788888888774  


Q ss_pred             HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH
Q 003710          226 MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN  305 (801)
Q Consensus       226 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~  305 (801)
                            +|+...+..+..+|+..            +.+.+      .++-..-+|.++|+.++|.+.+            
T Consensus       932 ------~~~~e~~k~i~~~ya~h------------L~~~~------~~~~Aal~Ye~~GklekAl~a~------------  975 (1265)
T KOG1920|consen  932 ------KPDSEKQKVIYEAYADH------------LREEL------MSDEAALMYERCGKLEKALKAY------------  975 (1265)
T ss_pred             ------ccCHHHHHHHHHHHHHH------------HHHhc------cccHHHHHHHHhccHHHHHHHH------------
Confidence                  46666666665554321            11111      1222334577778888777654            


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003710          306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCIT--IINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYA  383 (801)
Q Consensus       306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~  383 (801)
                            ..+|+|.+|+.+-.+|...    -|...  --.|..-+...++.-+|-++..+....        ..-.+..|+
T Consensus       976 ------~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ 1037 (1265)
T KOG1920|consen  976 ------KECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLC 1037 (1265)
T ss_pred             ------HHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHh
Confidence                  4467788888777766321    22221  134444555555555555544333221        122344455


Q ss_pred             ccCChHHHHHHHhcCC
Q 003710          384 GSGALKMTEKLFGSMI  399 (801)
Q Consensus       384 k~g~~~~A~~~f~~~~  399 (801)
                      +...+++|.++-..-.
T Consensus      1038 ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASKAK 1053 (1265)
T ss_pred             hHhHHHHHHHHHHhcc
Confidence            5566666666554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.13  E-value=3.1  Score=41.04  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-cchHHHHH
Q 003710          532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS----APT-ARIWGALL  605 (801)
Q Consensus       532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~-~~~~~~ll  605 (801)
                      .|..-+. +.+.|++.+|...|....+.|.-.+- ...+-.|...+...|++++|...|..+..    .|- +...--|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4555444 44567799999999888876522211 33455567777777777777666655432    111 12333334


Q ss_pred             HHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710          606 TASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       606 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      ......|+.+.|...++++++.-|+.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            4455556666666666666666665443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.96  E-value=29  Score=36.80  Aligned_cols=129  Identities=15%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             HhhHHHHHHHHHhhcChhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHH
Q 003710          438 AMTFASILPAYAEIATLSDSMQIHSLITKLG-LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQ  516 (801)
Q Consensus       438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~  516 (801)
                      ...|...+++..+..-++.|+.+|..+.+.+ ..+++.++++++.-|+.                       |+..-|.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----------------------~d~~ta~~  453 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----------------------GDRATAYN  453 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----------------------CCcchHHH
Confidence            3456667777788888999999999999888 56778888888876653                       33344466


Q ss_pred             HHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710          517 LFSEMREKGIKPNESTFV-SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLGRIGNLDQAKRFIEEMP  593 (801)
Q Consensus       517 l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~  593 (801)
                      +|+--..  .-||...|. -.+.-+...++-+.|+.+|+....+  +..+  ...|..||+-=..-|++..|..+=++|.
T Consensus       454 ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         454 IFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            6665433  245555443 3455556678888888888865542  2223  4567777776667777766665555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.62  E-value=45  Score=38.44  Aligned_cols=81  Identities=21%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             HHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHH
Q 003710          109 FVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECA  188 (801)
Q Consensus       109 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  188 (801)
                      +.+.|++++|...|-+-... +.|     +.+++-+........-..+++.+.+.|+. +..--+.|+.+|.|.++.+.-
T Consensus       378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL  450 (933)
T KOG2114|consen  378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL  450 (933)
T ss_pred             HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence            33566666666665543311 122     23444444444444555556666666643 333345566667776666666


Q ss_pred             HHhhccCC
Q 003710          189 ERMFDEMP  196 (801)
Q Consensus       189 ~~~f~~m~  196 (801)
                      .+..+...
T Consensus       451 ~efI~~~~  458 (933)
T KOG2114|consen  451 TEFISKCD  458 (933)
T ss_pred             HHHHhcCC
Confidence            66555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.15  E-value=9.9  Score=33.79  Aligned_cols=19  Identities=5%  Similarity=-0.076  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHccCCCCc
Q 003710          614 IVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~  632 (801)
                      ...|...++++++.-|++.
T Consensus       115 ~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHHCcCCh
Confidence            4567777778887777754

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.81  E-value=88  Score=40.77  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHhh-cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhc
Q 003710          272 VQTSLVDMYGKCGVVDYAERLFNM-IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTK  349 (801)
Q Consensus       272 ~~~~li~~y~~~g~~~~A~~lf~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~  349 (801)
                      .+-.+...|+.-+++|....+... ...++   ...-|-.....|++..|...|+.+..   ..|+ ..+++.++..-..
T Consensus      1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred             HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhc
Confidence            344455578888888777666652 33332   23345556677999999999999984   4566 5677777777666


Q ss_pred             cCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHccCChHHHHHHHhcCCCCCHHHHHHH
Q 003710          350 LGALLEGKSIHGYAIRKGFLPNVALETA-LIDMYAGSGALKMTEKLFGSMIEKNLVSWNAM  409 (801)
Q Consensus       350 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~-Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l  409 (801)
                      .+.++......+..... ..+....+++ =+.+-.+.++++..+....   ..+..+|.+.
T Consensus      1496 ~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred             ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence            67666655533333222 1222222222 2344456666666665554   5556666654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.77  E-value=0.84  Score=29.66  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710          634 CYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       634 ~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      +|..|+++|.+.|+|++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36788999999999999999998844

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.59  E-value=36  Score=35.97  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=29.5

Q ss_pred             HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710          481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK  524 (801)
Q Consensus       481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  524 (801)
                      ..+++.|..+...|.-.+-++..++.-.|+.++|.+..++|...
T Consensus       291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            34455666655555555566777777778888888888888764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.56  E-value=44  Score=36.99  Aligned_cols=139  Identities=16%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             HcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710          507 IHGLGKISIQLFSEMREKGIK--PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD  583 (801)
Q Consensus       507 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~  583 (801)
                      ..|+.+-|-.++..-.+--++  |....+.+.  -+-..|+.+.|..+++.+.+++   |+ +..-.--+....+.|..+
T Consensus       343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  343 SSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchh
Confidence            335555555555544432222  222222222  2455789999999999998863   76 555555677788899999


Q ss_pred             HHH---HHHHhCCC-CCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710          584 QAK---RFIEEMPS-APTARIWGALLTA-----SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       584 eA~---~~~~~m~~-~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .+.   +++..... +-+..+...+.--     +...++.+.|..++.++.+..|++...|..++++....+...+
T Consensus       418 ~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e  493 (577)
T KOG1258|consen  418 DANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE  493 (577)
T ss_pred             hhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence            888   66655432 3333333333322     3456789999999999999999999999999998888775443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.45  E-value=11  Score=38.30  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFV----SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEH  568 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~  568 (801)
                      |..+|+--=.+|...|+-+.-...+++.... ..||...|.    .+.-++...|-+++|++.-++..   .+.|. .-.
T Consensus       136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ral---qiN~~D~Wa  211 (491)
T KOG2610|consen  136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRAL---QINRFDCWA  211 (491)
T ss_pred             hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhc---cCCCcchHH
Confidence            5555555555666666665555555555432 233332222    12223344566666666555443   23332 333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEM  592 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m  592 (801)
                      -.++...+.-.|+..|+.++..+-
T Consensus       212 ~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  212 SHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHhc
Confidence            334455555566666666666554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.14  E-value=19  Score=33.15  Aligned_cols=134  Identities=7%  Similarity=0.100  Sum_probs=83.4

Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhcC-CChHHHHHHHhhcC
Q 003710          220 LVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD-VMVQTSLVDMYGKC-GVVDYAERLFNMIF  297 (801)
Q Consensus       220 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~li~~y~~~-g~~~~A~~lf~~m~  297 (801)
                      ++.++.+.+.|+.|+...+..++..+.+.|++..-.+    ++..++-+| ..+.-.|++.-.+. .-..-|...+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            4566667778888888888888888888887654433    344444444 34444444332221 11233444444442


Q ss_pred             CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 003710          298 PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRK  366 (801)
Q Consensus       298 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  366 (801)
                          ..+..++..+...|++-+|+++.+.....     +......++.+..+.+|...-..++......
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                24566778889999999999998875322     2233456677777777766666666666554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.13  E-value=38  Score=35.75  Aligned_cols=148  Identities=7%  Similarity=-0.031  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHH
Q 003710          494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP---NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEH  568 (801)
Q Consensus       494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~  568 (801)
                      ...+|..++..+.+.|+++.|...+.++...+..+   +......-....-..|+.++|...++..... .+...  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44678888888899999999999888887744222   2233344455566678888888888777652 11111  111


Q ss_pred             HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHHHHHHh------cCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710          569 YGCIIDLLGRIGNLDQAKRF-IEEMPSAPTARIWGALLTASRK------NNDIVSAEFAARHVLSSAQDNTGCYVLLSNM  641 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  641 (801)
                      ...+...+..  ..+..... ......+.-...+..+...+..      .++.+.+...++.+.++.|.....+..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111100000  00000000 0000000001122222222223      3777888889999999999887777777666


Q ss_pred             HHH
Q 003710          642 YAE  644 (801)
Q Consensus       642 y~~  644 (801)
                      +.+
T Consensus       302 ~~~  304 (352)
T PF02259_consen  302 NDK  304 (352)
T ss_pred             HHH
Confidence            543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK09687 putative lyase; Provisional

Probab=87.88  E-value=34  Score=34.87  Aligned_cols=76  Identities=12%  Similarity=0.059  Sum_probs=41.7

Q ss_pred             CCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710          369 LPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY  448 (801)
Q Consensus       369 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~  448 (801)
                      .++..+....+.++++.|+......+.+.+...++  .-..+.++...|.. +|+..+.++...  .||...-...+.+|
T Consensus       203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            34555566666666666664433334444333332  23456677777774 577777777653  34555555555544


Q ss_pred             H
Q 003710          449 A  449 (801)
Q Consensus       449 ~  449 (801)
                      .
T Consensus       278 ~  278 (280)
T PRK09687        278 K  278 (280)
T ss_pred             h
Confidence            3

>PRK09687 putative lyase; Provisional

Probab=87.52  E-value=36  Score=34.72  Aligned_cols=238  Identities=8%  Similarity=-0.081  Sum_probs=127.1

Q ss_pred             HhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCCh----hHHHHHHHHHHHhCCC
Q 003710           91 FEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYL----SEGEKVHGSLFKSGLN  166 (801)
Q Consensus        91 f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~  166 (801)
                      ++.+..+|.......+..+...|. ++++..+..+.+.   +|...=...+.+++..|+.    ..+..++..+...  .
T Consensus        29 ~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D  102 (280)
T PRK09687         29 FRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D  102 (280)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence            333445555555556666665553 3344444444432   3444444455555555543    2344444444222  4


Q ss_pred             CchhhHhHHHHHHHhcCCc-----hHHHHhhcc-CCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHH
Q 003710          167 SDVYVCNSLIVMYMKLGCV-----ECAERMFDE-MPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLIS  240 (801)
Q Consensus       167 ~~~~~~~~li~~y~~~g~~-----~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  240 (801)
                      ++..+-...+.+++..+.-     ..+...+.. +..++...--..+.++.+.|+ ++++..+-.+...   +|...-..
T Consensus       103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~  178 (280)
T PRK09687        103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW  178 (280)
T ss_pred             CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence            5666666666666655421     223333322 223455555566677777665 4666766666642   45455555


Q ss_pred             HHHHHhccC-ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhH
Q 003710          241 ALGAISIEG-CLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLE  319 (801)
Q Consensus       241 ll~a~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~  319 (801)
                      .+.++...+ +...+...+..++   -.+|..+-...+.++++.|+..-...+.+.+..++  ..-..+.++.+.|.. +
T Consensus       179 A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~  252 (280)
T PRK09687        179 AAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-T  252 (280)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-h
Confidence            555555542 2334444444444   35677778888888888888544444444444433  234566777777774 6


Q ss_pred             HHHHHHHHHhCCCCCCChhhHHHHHHHH
Q 003710          320 SFSCLRKMLEDDNLNPDCITIINLLPSC  347 (801)
Q Consensus       320 A~~l~~~m~~~~g~~pd~~t~~~ll~~~  347 (801)
                      |+..+..+...   .||...-...+.+|
T Consensus       253 a~p~L~~l~~~---~~d~~v~~~a~~a~  277 (280)
T PRK09687        253 LLPVLDTLLYK---FDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHHHHHHhh---CCChhHHHHHHHHH
Confidence            77777777653   34555554444444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.50  E-value=29  Score=33.74  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003710          405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA  484 (801)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~  484 (801)
                      .|.--..+|-...++++|...+.+..+ +..-|..-|.       ..+..+.+..+..++.+..  --+..|+--..+|.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~  102 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence            345555667777777777776666542 1111111111       1223344444444444321  22334555666777


Q ss_pred             hcCCcccc
Q 003710          485 KCGDLQTA  492 (801)
Q Consensus       485 ~~g~~~~A  492 (801)
                      .+|.++.|
T Consensus       103 E~GspdtA  110 (308)
T KOG1585|consen  103 ECGSPDTA  110 (308)
T ss_pred             HhCCcchH
Confidence            77777766

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.38  E-value=1.3  Score=28.67  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMR  522 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~  522 (801)
                      +|+.|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46777777888888888888887744

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.35  E-value=7.5  Score=43.53  Aligned_cols=183  Identities=19%  Similarity=0.253  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh----------hHHHHHHHHHhhcChhhHHHHHHHHHHh-C-CCCch
Q 003710          406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM----------TFASILPAYAEIATLSDSMQIHSLITKL-G-LVSNI  473 (801)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~  473 (801)
                      -..++-.|-...+++..+++.+.+..   -||..          .|.-.|+-=-+-|+-++|..+.--+++. | +.|| 
T Consensus       204 V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD-  279 (1226)
T KOG4279|consen  204 VSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD-  279 (1226)
T ss_pred             HHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc-
Confidence            33455556666667777777776654   23321          2222333333456666777665555532 2 3343 


Q ss_pred             HHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHH
Q 003710          474 YISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST---FVSLLSSCSISGMVDEGW  550 (801)
Q Consensus       474 ~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~  550 (801)
                              |||-||++-+-.      -+-+.|...+..+.|++.|++.-+  +.|+...   +..|+.+-.+.  ++...
T Consensus       280 --------m~Cl~GRIYKDm------F~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~  341 (1226)
T KOG4279|consen  280 --------MYCLCGRIYKDM------FIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSL  341 (1226)
T ss_pred             --------eeeeechhhhhh------hhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchH
Confidence                    567777654431      122345555667788999998877  6787553   55555443221  11111


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710          551 NYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD  630 (801)
Q Consensus       551 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  630 (801)
                      +    |+.         .-..|-.+++|.|.++.-.++++-          ...+.+..-.+|...|.++++++.++.|+
T Consensus       342 E----lq~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P  398 (1226)
T KOG4279|consen  342 E----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPP  398 (1226)
T ss_pred             H----HHH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence            1    111         112355678899999988888765          23455666778999999999999999998


Q ss_pred             Cch
Q 003710          631 NTG  633 (801)
Q Consensus       631 ~~~  633 (801)
                      .-.
T Consensus       399 ~WY  401 (1226)
T KOG4279|consen  399 VWY  401 (1226)
T ss_pred             eeh
Confidence            643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.78  E-value=1.6  Score=27.73  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN  529 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  529 (801)
                      .+|..+...|...|++++|++.|++.++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            4677888888888888888888888877  4554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.72  E-value=2.8  Score=37.90  Aligned_cols=54  Identities=13%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             HhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710          609 RKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       609 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ...++.+.++.++.-+.-+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            456677778888877777888888887788888888888888888888876654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.51  E-value=1.5  Score=40.76  Aligned_cols=65  Identities=9%  Similarity=-0.002  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      +.|..-..+..+.+.++.|.....+++++.|.+..+....+.+|.+..++++|.+-++.+.+...
T Consensus       135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            33444445667888899999999999999999888888889999999999999999999988644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.46  E-value=70  Score=36.99  Aligned_cols=117  Identities=14%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             hHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHH----HHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 003710          173 NSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMI----GGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIE  248 (801)
Q Consensus       173 ~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  248 (801)
                      ..-++++.+...++.|..+-+.-.. |..+-..+.    +-+.+.|++++|...|-+-... +.|     ..++.-+-..
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda  410 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA  410 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence            4455666666666666666554321 222222222    3344677888887777664321 222     2334444444


Q ss_pred             CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcC
Q 003710          249 GCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIF  297 (801)
Q Consensus       249 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~  297 (801)
                      ..+..--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+...
T Consensus       411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            4444555566666677754 34445678888888888887777666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=86.46  E-value=2.2  Score=29.15  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES  531 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  531 (801)
                      +|..+...|...|++++|+++|++.++  ..||..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~   35 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence            466677777778888888888888877  356554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.41  E-value=3.3  Score=29.73  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=25.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710          604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCY  635 (801)
Q Consensus       604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  635 (801)
                      |.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45578899999999999999999999986543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.34  E-value=3.1  Score=37.00  Aligned_cols=54  Identities=7%  Similarity=0.029  Sum_probs=46.6

Q ss_pred             hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710          610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL  663 (801)
Q Consensus       610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~  663 (801)
                      ..++.+.++.++.-+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            377888888888888889999988888889999999999999999998887654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.33  E-value=13  Score=34.77  Aligned_cols=96  Identities=10%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh------HH
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES--TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI------EH  568 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~  568 (801)
                      .|..+..-|++.|+.++|++.|.++.+....|...  .+..++..+...|++..+..+.........-..+.      ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            46667777788888888899999999877666655  46778888888899999888887765432111111      22


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS  594 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~  594 (801)
                      |..|.  +...|++.+|-+.|-+...
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHccCc
Confidence            22222  3356788888887776653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.17  E-value=36  Score=34.28  Aligned_cols=144  Identities=10%  Similarity=0.026  Sum_probs=97.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 003710          504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNL  582 (801)
Q Consensus       504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~  582 (801)
                      .....|+..+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+  ..-+ ......=+..+.++...
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence            4566788888999999988742 223445667788999999999999999987542  1111 11223446677777777


Q ss_pred             HHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCchhHHHHHHHHHHcCCchH
Q 003710          583 DQAKRFIEEMPSAP-TARIWGALLTASRKNNDIVSAEFAARHVLSS--AQDNTGCYVLLSNMYAEAGRWED  650 (801)
Q Consensus       583 ~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~  650 (801)
                      .+..++..+.-..| |...-..|...+...|+.+.|...+=.+++.  .-.|...-..|..++..-|.-+.
T Consensus       220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            76666666665566 4555566777788889998887766555544  34466666777777777775544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.69  E-value=4.4  Score=40.66  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +...++..+...|+.+.+...++.+++.+|-+...|..+..+|.+.|+...|...++.++.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3445566667777888888888888899999999999999999999999999999888876

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.42  E-value=10  Score=38.19  Aligned_cols=79  Identities=15%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHHHHH
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRK----DYGIVPGIEHYGC  571 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~  571 (801)
                      .+++.++..+...|+.+.+.+.++++.... +-|...|..++.++...|+...|+..|+.+.+    +.|+.|.......
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345667777777777888899999988843 44777899999999999999999998888765    4577777665554


Q ss_pred             HHHH
Q 003710          572 IIDL  575 (801)
Q Consensus       572 li~~  575 (801)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.10  E-value=17  Score=32.47  Aligned_cols=72  Identities=25%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CcchHHHHHHHHHh-cCCHHH
Q 003710          542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAP-TARIWGALLTASRK-NNDIVS  616 (801)
Q Consensus       542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~-~g~~~~  616 (801)
                      ..++.+++..+++.|.   -+.|+ .+.-..-+..+.+.|+++||..++++....+ ....-.+|+..|.. .||.+.
T Consensus        22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence            4788888888888886   56676 4444555667788999999999999987654 33444456665544 355443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.02  E-value=13  Score=37.63  Aligned_cols=161  Identities=10%  Similarity=-0.023  Sum_probs=113.0

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH----HHHhcCCH
Q 003710          507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID----LLGRIGNL  582 (801)
Q Consensus       507 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~  582 (801)
                      -.|+..+|-..++++++. .+.|...+.-.=.+|.-.|+.+.-...++.+..  .-.|+...|+.+=.    ++..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478888888889998874 566777787778899999999998888888764  33566655554433    44578999


Q ss_pred             HHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcCCchHHHHHHH
Q 003710          583 DQAKRFIEEMPSA--PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAGRWEDVEQIKA  656 (801)
Q Consensus       583 ~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~  656 (801)
                      ++|.+.-++...-  -|.-.-.++.......|+..+|.+...+--..=.+    -...|-..+-.|.+.+.++.|.++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999998887642  33333445666677788888888877654321111    13345566667788899999999998


Q ss_pred             HHHHCCCccCCccc
Q 003710          657 IMEKEGLKKTTGCS  670 (801)
Q Consensus       657 ~m~~~g~~~~~~~s  670 (801)
                      .=.-+.+.|+.+++
T Consensus       272 ~ei~k~l~k~Da~a  285 (491)
T KOG2610|consen  272 REIWKRLEKDDAVA  285 (491)
T ss_pred             HHHHHHhhccchhh
Confidence            76555566665533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.84  E-value=1.8  Score=27.40  Aligned_cols=30  Identities=13%  Similarity=-0.092  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQ  629 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  629 (801)
                      +|..+...+...|+.+.|...++++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344455555556666666666666665555

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=83.20  E-value=2.9  Score=42.19  Aligned_cols=112  Identities=12%  Similarity=0.030  Sum_probs=77.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcC
Q 003710          536 LLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRKNN  612 (801)
Q Consensus       536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g  612 (801)
                      -.+-|.++|.+++|+..|..-.   .+.| +...|..-..+|.+..++..|..=.+....-  .-.-.|..-..+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3567889999999999998765   4567 6788888888999999998887766654311  11223333334444568


Q ss_pred             CHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710          613 DIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       613 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      +.++|.+-++.+++++|.+..    |-..|+.-....|+.-+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~  217 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA  217 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence            899999999999999999644    44455555555554433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=82.87  E-value=19  Score=31.23  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=24.2

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710          506 AIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRK  558 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  558 (801)
                      +..|+.+.|++.|.+.+.  +-| +...|+.-..++.-.|+.++|+.=+++..+
T Consensus        54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            334444444555555544  222 333455555555555555555554444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=82.48  E-value=10  Score=35.04  Aligned_cols=45  Identities=13%  Similarity=0.037  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC----chHHHHHHHHHH
Q 003710          615 VSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR----WEDVEQIKAIME  659 (801)
Q Consensus       615 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~  659 (801)
                      ++|..-+++++.++|+...++..++++|...+.    -.+|.++|++..
T Consensus        52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            457778888999999999999999999988765    234444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.19  E-value=1.5  Score=39.56  Aligned_cols=86  Identities=13%  Similarity=0.039  Sum_probs=64.6

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhh
Q 003710          139 FVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVS  218 (801)
Q Consensus       139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~  218 (801)
                      .++..+.+.+.......+++.+.+.+...+....+.|+..|++.++.+...++++....   .-...++..+-+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35677777788888888888888877667788999999999999888999998884332   445667777777888888


Q ss_pred             HHHHHHHHH
Q 003710          219 SLVFFKEMQ  227 (801)
Q Consensus       219 A~~l~~~m~  227 (801)
                      |.-++.++.
T Consensus        89 a~~Ly~~~~   97 (143)
T PF00637_consen   89 AVYLYSKLG   97 (143)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHHHcc
Confidence            877777653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.66  E-value=3  Score=26.20  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN  529 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  529 (801)
                      .|..+...|...|++++|++.|++..+  +.|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence            567778888888888888999888877  4454

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	801
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 74/554 (13%), Positives = 153/554 (27%), Gaps = 173/554 (31%)

Query: 252 KIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIF--PRNIVAWNAMVG 309
                  C+ ++  +   ++ +  +  +      V    RLF  +      +V    +  
Sbjct: 28  AFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEE 85

Query: 310 GYVVNAHFL---------------ESFSCLRKMLEDDN--LNPDCITIINLLPSCTKL-G 351
              +N  FL                 +   R  L +DN       ++ +       KL  
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQ 142

Query: 352 ALLEGKS-----IHGYAIRKGFLPNVALETALIDMYAGSGALKMT---EKLFGSMIEKNL 403
           ALLE +      I G                   +  GSG  K     +      ++  +
Sbjct: 143 ALLELRPAKNVLIDG-------------------V-LGSG--KTWVALDVCLSYKVQCKM 180

Query: 404 ---VSWNAMIAAYVRNGQNREA---MELFQDLWSEPLKPDAMTFAS-----ILPAYAEIA 452
              + W       +           +E+ Q L  + + P+  + +       L  ++  A
Sbjct: 181 DFKIFW-------LNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 453 TLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIH---- 508
            L   ++       L ++ N+  + +       C  L T R     + +  A   H    
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 509 ----GLGKI-SIQLFS---EMREKGIKPNESTFVSLLSSCSISGMVDEG---WNYFDSMR 557
                L       L     + R + + P E    +      I+  + +G   W+ +    
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNW---- 347

Query: 558 KDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSA 617
                    +H  C  D L  I      +  +  +  A   +++  L +    +  I + 
Sbjct: 348 ---------KHVNC--DKLTTI-----IESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTI 390

Query: 618 EFAARHVLSSAQDNTGCYVLLSNMYAEAGRW-----EDVEQIKAIMEKEGLKKTTGCSMF 672
                 +LS         ++          W      DV  +   + K  L         
Sbjct: 391 ------LLS---------LI----------WFDVIKSDVMVVVNKLHKYSL--------- 416

Query: 673 EKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHN--VSKFSPAHLMKNRAKSP 730
                    + +      T  I ++   L  K+  ++ +H   V  ++      +    P
Sbjct: 417 ---------VEKQP-KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 731 ---------H--HH 733
                    H  HH
Sbjct: 467 PYLDQYFYSHIGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-09
 Identities = 100/659 (15%), Positives = 196/659 (29%), Gaps = 192/659 (29%)

Query: 66  PRNITKTRALQELVSSGSMESACY-LFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEF--- 121
           P++I     +  ++ S    S    LF     L +    +V + FV+  L +   +F   
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQK-FVEEVL-RINYKFLMS 96

Query: 122 HHRMVCEGFKADYFTY------------PF----------VIKACAGLLYLSEGEKV--H 157
             +            Y             F           +K    LL L   + V   
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 158 GSL-F-KSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGD 215
           G L   K+ +  DV  C S  V           +   D       + W ++    C+  +
Sbjct: 157 GVLGSGKTWVALDV--CLSYKV-----------QCKMD-----FKIFWLNL--KNCNSPE 196

Query: 216 GVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS 275
            V      + +Q    + D      +  + +I+        +    I++ L   +  +  
Sbjct: 197 TV-----LEMLQKLLYQIDPNWTSRSDHSSNIK--------LRIHSIQAELRRLLKSK-- 241

Query: 276 LVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP 335
               Y  C +V     L       N+   NA       NA F  + SC  K+L       
Sbjct: 242 ---PYENCLLV-----L------LNV--QNA----KAWNA-F--NLSC--KIL------- 269

Query: 336 DCIT-----IINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKM 390
             +T     + + L + T     L+  S           P+      L+  Y        
Sbjct: 270 --LTTRFKQVTDFLSAATTTHISLDHHS-------MTLTPDEVKS--LLLKYLDCRP--- 315

Query: 391 TEKLFGSMIEKN--LVSWNAMIAAYVRNGQNR---------EAMELFQDLWSEPLKPDAM 439
            + L   ++  N   +S   +IA  +R+G            + +    +     L+P   
Sbjct: 316 -QDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 440 -----TFASILPAYAEI--ATLS---------DSMQIHSLITKLGLVSNIYISNSIVYMY 483
                  + + P  A I    LS         D M + + + K  LV       S + + 
Sbjct: 372 RKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIP 429

Query: 484 AKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMR----EKGIKPNESTFVSL--- 536
           +   +L+   +          YA+H   +  +  ++  +    +  I P    +      
Sbjct: 430 SIYLELKVKLE--------NEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 537 --LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYG----CIIDLLGRIGNLDQAKRFI 589
             L +      +      F  +  D+  +   I H          +L  +  L   K +I
Sbjct: 479 HHLKNIEHPERMTL----FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 590 EEMPSAPTARIWGALLTASRK-NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR 647
            +        +  A+L    K   +++ +++    +L  A       +     + EA +
Sbjct: 535 CDNDPKYERLV-NAILDFLPKIEENLICSKY--TDLLRIALMAEDEAI-----FEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-04
 Identities = 41/285 (14%), Positives = 97/285 (34%), Gaps = 70/285 (24%)

Query: 553 FDSMRKDYG---IVPG-----IEHYGC--IIDLLGRIGNLDQAKRFIEEMPSAPTA--RI 600
           F++    Y    I+       ++++ C  + D+   I + ++    I     A +   R+
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRL 67

Query: 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660
           +  LL    K  ++V  +F    V    + N   Y  L +      R   +     I ++
Sbjct: 68  FWTLL---SKQEEMV-QKF----VEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 661 EGLKKTTGCSMF--------EKNGETHRFINQDRSHS-----------KTYLIYNVL--- 698
           + L       +F        +   +  + + + R              KT++  +V    
Sbjct: 117 DRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 699 DILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNT 758
            +  +   + F+++  +  SP  +++   K  +       I     S          +++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ------IDPNWTS-------RSDHSS 221

Query: 759 RICEDCHSAVKKISEITKRE------LI---VRDPKCFHHFRNGC 794
            I    HS   ++  + K +      L+   V++ K ++ F   C
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 57.1 bits (136), Expect = 2e-08
 Identities = 30/290 (10%), Positives = 72/290 (24%), Gaps = 21/290 (7%)

Query: 389 KMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448
           ++  KL          +    +    R    + A  L       P  P     A +L   
Sbjct: 43  RLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102

Query: 449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--------------- 493
               +L          ++  L        +          L  A                
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162

Query: 494 -DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEG-WN 551
             +  +N +++ +A  G  K  + +   +++ G+ P+  ++ + L               
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222

Query: 552 YFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKN 611
             + M    G+         ++    R   L    +        P        +  S+  
Sbjct: 223 CLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP---PPVNTSKLL 278

Query: 612 NDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661
            D+ + +    +        T   +    ++ E      V  ++      
Sbjct: 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.1 bits (123), Expect = 6e-07
 Identities = 20/198 (10%), Positives = 52/198 (26%), Gaps = 15/198 (7%)

Query: 6   PLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIG 65
              +     +       +P ++Q            +                  S+  + 
Sbjct: 72  SKQMAGCLEDCTRQAPESPWEEQL-------ARLLQEAPGKLSLDVEQAPSGQHSQAQLS 124

Query: 66  PRNITKTRALQELVSSGSMESACYLFEKM-------SYLDTYIWNVVIRGFVDNGLFQEA 118
            +        +  + +  +  A +L             L   ++N V+ G+   G F+E 
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184

Query: 119 VEFHHRMVCEGFKADYFTYPFVIKACAGL-LYLSEGEKVHGSLFKSGLNSDVYVCNSLIV 177
           V     +   G   D  +Y   ++            E+    + + GL         L+ 
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

Query: 178 MYMKLGCVECAERMFDEM 195
              +   ++   ++    
Sbjct: 245 EEDRATVLKAVHKVKPTF 262

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.7 bits (109), Expect = 3e-05
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 325 RKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSI---HGYAIRKGFLPNVALETALIDM 381
                   L+     ++     C     L     +   H    +K  L  + +  A++  
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174

Query: 382 YAGSGALKMTEKLFGSMIEK----NLVSWNAMIAAYVRNGQNREAME 424
           +A  GA K    +   + +     +L+S+ A +    R  Q+   +E
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.7 bits (109), Expect = 3e-05
 Identities = 19/170 (11%), Positives = 54/170 (31%), Gaps = 12/170 (7%)

Query: 134 YFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFD 193
                 +++   G L L   +   G   ++ L+       +     +    +  A  +  
Sbjct: 92  EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151

Query: 194 EM-------PVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFS---LISALG 243
                     +     +N+++ G+   G     +     +++ GL  D  S    +  +G
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211

Query: 244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLF 293
               +      +    Q+ + GL++  +    L+    +  V+    ++ 
Sbjct: 212 --RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	801
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.18
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.98
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.95
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.7
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.35
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.29
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.1
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.06
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.05
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.98
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.38
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.28
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.13
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.9
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.66
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.35
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.62

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-18  Score=139.73  Aligned_cols=346  Identities=14%  Similarity=0.176  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHCC---CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             6799899998761799489999984018---9993018999999984799158999999977679999985169989999
Q 003710          270 VMVQTSLVDMYGKCGVVDYAERLFNMIF---PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPS  346 (801)
Q Consensus       270 ~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~~  346 (801)
                      ...+..+...|.+.|++++|...|++..   +.+..+|..+...|...|++++|+..+......  ...+..........
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~  110 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAA  110 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
T ss_conf             9999999999998699999999999999859998999999999964200022222222212112--22222222222222


Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             83249928899999999994999865689999999990699699999983078---878887999999999819987999
Q 003710          347 CTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI---EKNLVSWNAMIAAYVRNGQNREAM  423 (801)
Q Consensus       347 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~  423 (801)
                      ..................... .................+....+...+....   ..+...+..+...+...|++++|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             222222222222211122222-2222222222222211000135678888740258610689986363010247199999


Q ss_pred             HHHHHHHCCCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             99998827999989-70198899999810592669999999999299873579989988998159922330478999999
Q 003710          424 ELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVII  502 (801)
Q Consensus       424 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li  502 (801)
                      ..+.+....  .|+ ...+..+...+...++++.|...+......... .                      ...|..+.
T Consensus       190 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----------------------~~~~~~l~  244 (388)
T d1w3ba_         190 HHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H----------------------AVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C----------------------HHHHHHHH
T ss_pred             HHHHHHHHH--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-H----------------------HHHHHHHH
T ss_conf             999999984--9464999999715522005299999999985777554-7----------------------99999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999972998999999999998899989-8999999999852299899999999938841999895899999999983299
Q 003710          503 MAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGN  581 (801)
Q Consensus       503 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  581 (801)
                      ..+...|+.++|+..|++..+  +.|+ ...+..+...+...|++++|...++.....  ...+...+..+..++...|+
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC
T ss_conf             999987899999999999998--49998999999999999748799999999865404--87300101579999998789


Q ss_pred             HHHHHHHHHHCCC-CCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             8999999995999-999-22699999999945997999999999970299993269999999997399
Q 003710          582 LDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR  647 (801)
Q Consensus       582 ~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~  647 (801)
                      +++|.+.+++... .|+ ...|..+...+...|+.+.|...++++++++|+++..|..|+.+|.+.|+
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999999986889899999999999985999999999999997099989999999999998589

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-17  Score=134.41  Aligned_cols=352  Identities=12%  Similarity=0.039  Sum_probs=221.4

Q ss_pred             HHHHHCCCCHHHHHHHHHHCC---CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCC
Q ss_conf             998761799489999984018---99930189999999847991589999999776799999-85169989999832499
Q 003710          277 VDMYGKCGVVDYAERLFNMIF---PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP-DCITIINLLPSCTKLGA  352 (801)
Q Consensus       277 i~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~~~~~~~~  352 (801)
                      ...+.+.|++++|.+.++++.   +.+...|..+...+.+.|++++|...|++..+.   .| +..++..+...+...|+
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCC
T ss_conf             999998699999999999999868998999999999999869999999999999985---99989999999999642000


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             2889999999999499986568999999999069969999998307---8878887999999999819987999999988
Q 003710          353 LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM---IEKNLVSWNAMIAAYVRNGQNREAMELFQDL  429 (801)
Q Consensus       353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  429 (801)
                      +++|...+....+...... .............+....+.......   ..................+....+...+.+.
T Consensus        83 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFI-DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             2222222221211222222-222222222222222222222211122222222222222222221100013567888874


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             27999989701988999998105926699999999992998735799899889981599223304789999999999729
Q 003710          430 WSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHG  509 (801)
Q Consensus       430 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li~~~~~~g  509 (801)
                      .... +-+...+..+...+...+..+.|...+....+.. +.+.                      ..|..+...+...|
T Consensus       162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~----------------------~~~~~l~~~~~~~~  217 (388)
T d1w3ba_         162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL----------------------DAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH----------------------HHHHHHHHHHHTTT
T ss_pred             HCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCH----------------------HHHHHHHHHHHCCC
T ss_conf             0258-6106899863630102471999999999999849-4649----------------------99999715522005


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             98999999999998899989899999999985229989999999993884199989-58999999999832998999999
Q 003710          510 LGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRF  588 (801)
Q Consensus       510 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~  588 (801)
                      ++++|+..+++..... ..+...+..+...+...|++++|...|+...+   +.|+ ...+..+..++...|++++|.+.
T Consensus       218 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~  293 (388)
T d1w3ba_         218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             2999999999857775-54799999999999987899999999999998---4999899999999999974879999999


Q ss_pred             HHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             995999--999226999999999459979999999999702999932699999999973990699999999997
Q 003710          589 IEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       589 ~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      ++....  +.+...+..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|...+++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             98654048730010157999999878999999999999986889899999999999985999999999999997

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-11  Score=93.97  Aligned_cols=118  Identities=14%  Similarity=-0.016  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-C-CCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             998999999999388419998958999999999832998999999995999-9-99226999999999459979999999
Q 003710          544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAA  621 (801)
Q Consensus       544 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~  621 (801)
                      +...++...+....+...-..+...+..+..++...|++++|...+++... . .+...|..+...+...|+.+.|...+
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf             57999999999999971301222111036888888887755002111222222222111013330122111101378887


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             9997029999326999999999739906999999999977
Q 003710          622 RHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       622 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      +++++++|.+...+..++.+|...|++++|...+++..+.
T Consensus       230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             7899884324999999999999878999999999999970

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.5e-11  Score=89.60  Aligned_cols=141  Identities=13%  Similarity=0.003  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf             299899999999999889-9989899999999985229989999999993884199989-58999999999832998999
Q 003710          508 HGLGKISIQLFSEMREKG-IKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQA  585 (801)
Q Consensus       508 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA  585 (801)
                      .+...+|.+.|.+..... -.++...+..+...+...|++++|...|+.....   .|+ ...+..+..+|.+.|++++|
T Consensus       149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A  225 (323)
T d1fcha_         149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA  225 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHCCCCCCCCHHH
T ss_conf             65799999999999997130122211103688888888775500211122222---222211101333012211110137


Q ss_pred             HHHHHHCCC-CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH-----------HHHHHHHHHCCCCHHH
Q ss_conf             999995999-99-922699999999945997999999999970299993269-----------9999999973990699
Q 003710          586 KRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY-----------VLLSNMYAEAGRWEDV  651 (801)
Q Consensus       586 ~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~y~~~g~~~~a  651 (801)
                      .+.+++... .| +...|..+..++...|+.+.|...+++++++.|.+...+           ..+..++...|+++.+
T Consensus       226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             8887789988432499999999999987899999999999997097570011245999999999999999982988999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=2.1e-07  Score=64.39  Aligned_cols=159  Identities=13%  Similarity=0.055  Sum_probs=78.5

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHH
Q ss_conf             99999729989999999999988999----89899999999985229989999999993884199989-----5899999
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIK----PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-----IEHYGCI  572 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l  572 (801)
                      ...+...|+.+.+...+.......-.    .....+......+...+....+...+............     ...+..+
T Consensus       140 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (366)
T d1hz4a_         140 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR  219 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             78999814566668999998887663002468999988888887646678888999999999987311572699999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHCCC-CC--C---CCHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCCCCCHHHHHHHH
Q ss_conf             9999832998999999995999-99--9---22699999999945997999999999970------29999326999999
Q 003710          573 IDLLGRIGNLDQAKRFIEEMPS-AP--T---ARIWGALLTASRKNNDIVSAEFAARHVLS------SAQDNTGCYVLLSN  640 (801)
Q Consensus       573 i~~~~~~g~~~eA~~~~~~m~~-~p--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~  640 (801)
                      ...+...|+.++|...++.... .+  +   ...+..+..++...|+.+.|...+++++.      ..|.....+..++.
T Consensus       220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  299 (366)
T d1hz4a_         220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ  299 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99998604489899999999976224666777889999999987587999999999999887642667479999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHH
Q ss_conf             99973990699999999997
Q 003710          641 MYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       641 ~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +|...|++++|.+.+++..+
T Consensus       300 ~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         300 LYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
T ss_conf             99987899999999999999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.8e-07  Score=63.53  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=16.0

Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999889998-98999999999852299899999999938
Q 003710          515 IQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMR  557 (801)
Q Consensus       515 ~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  557 (801)
                      ++.++++.+.  .| +...|..+...+...|++++|...++.+.
T Consensus       132 l~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al  173 (315)
T d2h6fa1         132 LEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  173 (315)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9887555432--10046889988778888886678999999999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=7.3e-07  Score=60.72  Aligned_cols=86  Identities=17%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC----CC--CCCHHHHHHHHHHHCCCHHH
Q ss_conf             2998999999999388419998958999999999832998999999995999----99--92269999999994599799
Q 003710          543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS----AP--TARIWGALLTASRKNNDIVS  616 (801)
Q Consensus       543 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p--~~~~~~~ll~~~~~~g~~~~  616 (801)
                      .|+.+.|..+|+.+.+.+  ..+...+...++.+.+.|+.++|..++++...    .|  ....|...+..-..+|+.+.
T Consensus       182 ~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~  259 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  259 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             557789999999999861--003889999999999869868999999999982789868999999999999998499999


Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999999702999
Q 003710          617 AEFAARHVLSSAQD  630 (801)
Q Consensus       617 a~~~~~~~~~~~p~  630 (801)
                      +..+.+++.+..|.
T Consensus       260 ~~~~~~r~~~~~~~  273 (308)
T d2onda1         260 ILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999987711

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.2e-06  Score=59.34  Aligned_cols=161  Identities=7%  Similarity=-0.049  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf             99999999972998999999999998899989899999999985229989999999993884199989-58999999999
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLL  576 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~  576 (801)
                      |...+..+...|+.+.|..+|+++...........|...+..+.+.|..+.|..+|+.+.+   ..|. ...|...+...
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~---~~~~~~~~~~~~a~~e  178 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHH
T ss_conf             9999999986133899999999999871578699999999999982786889999999998---0888679999999999


Q ss_pred             -HHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHCCCCH
Q ss_conf             -832998999999995999--99922699999999945997999999999970299993----26999999999739906
Q 003710          577 -GRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT----GCYVLLSNMYAEAGRWE  649 (801)
Q Consensus       577 -~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~~~  649 (801)
                       ...|+.+.|..+++.+..  ..+...|...+..+...|+.+.|+.++++++...|.++    ..+......-...|+.+
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~  258 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             87655778999999999986100388999999999986986899999999998278986899999999999999849999


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999977
Q 003710          650 DVEQIKAIMEKE  661 (801)
Q Consensus       650 ~a~~~~~~m~~~  661 (801)
                      .+.++.+++.+.
T Consensus       259 ~~~~~~~r~~~~  270 (308)
T d2onda1         259 SILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999987

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=8e-06  Score=53.60  Aligned_cols=93  Identities=9%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCC-HHHHHH
Q ss_conf             9999999972998999999999998899989---899999999985229989999999993884---199989-589999
Q 003710          499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPN---ESTFVSLLSSCSISGMVDEGWNYFDSMRKD---YGIVPG-IEHYGC  571 (801)
Q Consensus       499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~  571 (801)
                      ..+...+...|+.++|...+++........+   ...+..+..++...|++++|...++.....   .+..|+ ...+..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  296 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL  296 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999998604489899999999976224666777889999999987587999999999999887642667479999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999832998999999995
Q 003710          572 IIDLLGRIGNLDQAKRFIEE  591 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~  591 (801)
                      +..+|.+.|++++|.+.+++
T Consensus       297 la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH
T ss_conf             99999987899999999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.5e-06  Score=58.66  Aligned_cols=32  Identities=16%  Similarity=-0.121  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999945997999999999970299993
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      |..+...+...|+.+.|...+++++..+|++.
T Consensus       212 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         212 NFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999987899999999999998399779

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=7.7e-06  Score=53.71  Aligned_cols=160  Identities=10%  Similarity=0.050  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf             999999999972998999999999998899989-899999999985229989999999993884199989-589999999
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                      +|+.+..+|...|++++|++.|++..+  +.|+ ...+..+..++...|++++|...|+...+.   .|+ ......+..
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~  147 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYL  147 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHH
T ss_conf             996004278887778875234468999--87611115888999999876679999999999865---3000788899999


Q ss_pred             HHHHCCCHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf             99832998999999995999-999226999999999459----9799999999997029999326999999999739906
Q 003710          575 LLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNN----DIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWE  649 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~  649 (801)
                      .+.+.+..+.+..+...... .+....+.. +.......    ..+.+...........|.....+..++.+|...|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             998853587899999876403144434557-7888888777778999999999866408450999999999999878999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999999779
Q 003710          650 DVEQIKAIMEKEG  662 (801)
Q Consensus       650 ~a~~~~~~m~~~g  662 (801)
                      +|...++......
T Consensus       227 ~A~~~~~~al~~~  239 (259)
T d1xnfa_         227 SATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999999839

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=6e-07  Score=61.32  Aligned_cols=78  Identities=5%  Similarity=-0.139  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             58999999999832998999999995999-99-92269999999994599799999999997029999326999999999
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      ...+..++..+...|+.++|.+.+.+... .| +...|..+...+...|+.+.|...++++++++|.+...|..|...+.
T Consensus       242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             56788799999998669999999998876291379999999999987899999999999999879663999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=3.3e-07  Score=63.05  Aligned_cols=60  Identities=7%  Similarity=-0.124  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999459979999999999702999932699999999973990699999999997
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +..+...+...++.+.|...+.+.++.+|.+...+..++.+|...|++++|.+.++...+
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             887999999986699999999988762913799999999999878999999999999998

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=8.3e-05  Score=46.63  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999972998999999999998
Q 003710          498 WNVIIMAYAIHGLGKISIQLFSEMRE  523 (801)
Q Consensus       498 ~~~li~~~~~~g~~~~A~~l~~~m~~  523 (801)
                      +..+...+...|++++|+..|++...
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             89999999981739999999999998

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=6.5e-06  Score=54.21  Aligned_cols=86  Identities=2%  Similarity=-0.152  Sum_probs=34.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCC
Q ss_conf             9999972998999999999998899989899999999985229989999999993884199989-589999999998329
Q 003710          502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG  580 (801)
Q Consensus       502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g  580 (801)
                      ...|...|++++|+..|++.++.. +-+...|..+..++...|++++|...|+...   .+.|+ ...|..++.+|.+.|
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCC
T ss_conf             999998699999999999999859-9989999817898741000001247888888---718873899999999999879


Q ss_pred             CHHHHHHHHHH
Q ss_conf             98999999995
Q 003710          581 NLDQAKRFIEE  591 (801)
Q Consensus       581 ~~~eA~~~~~~  591 (801)
                      ++++|...+++
T Consensus        87 ~~~~A~~~~~~   97 (201)
T d2c2la1          87 SYDEAIANLQR   97 (201)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
T ss_conf             99999999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=0.00012  Score=45.46  Aligned_cols=138  Identities=16%  Similarity=0.050  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf             999999999972998999999999998899989899999999985229989999999993884199989-5899999999
Q 003710          497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDL  575 (801)
Q Consensus       497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~  575 (801)
                      .|+. ...+...|+++.|++.|.++    ..|+..++..+...+...|++++|...|+...+   +.|+ ...|..+..+
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf             9999-99999877999999999864----898899999999999985891467878999999---855234667889999


Q ss_pred             HHHCCCHHHHHHHHHHCCC--CCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf             9832998999999995999--99922-69999999994599799999999997029999326999999999739906999
Q 003710          576 LGRIGNLDQAKRFIEEMPS--APTAR-IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE  652 (801)
Q Consensus       576 ~~~~g~~~eA~~~~~~m~~--~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~  652 (801)
                      +.+.|++++|.+.+++...  +.+.. .+..       .|            +........++..++.+|...|++++|.
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~-------~~------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKI-------LG------------LQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGG-------GT------------BCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH-------HH------------HHCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             9854249999999999998672673678998-------66------------5436305889999999999978999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999977
Q 003710          653 QIKAIMEKE  661 (801)
Q Consensus       653 ~~~~~m~~~  661 (801)
                      +.+....+.
T Consensus       141 ~~l~~A~~~  149 (192)
T d1hh8a_         141 EQLALATSM  149 (192)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHC
T ss_conf             999999836

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=7e-06  Score=53.98  Aligned_cols=103  Identities=10%  Similarity=-0.070  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CCCHHHHH
Q ss_conf             89899999999985229989999999993884199989-58999999999832998999999995999-99-92269999
Q 003710          528 PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGAL  604 (801)
Q Consensus       528 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~l  604 (801)
                      |+...+......+...|++++|+..|+.....   .|+ ...|..++.+|.+.|++++|...+++... .| +...|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             64999999999999869999999999999985---999899998178987410000012478888887188738999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99999459979999999999702999932
Q 003710          605 LTASRKNNDIVSAEFAARHVLSSAQDNTG  633 (801)
Q Consensus       605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~  633 (801)
                      ..++...|+.+.|...+++++++.|.+..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99999879999999999999874955679

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.9e-05  Score=48.90  Aligned_cols=101  Identities=7%  Similarity=-0.071  Sum_probs=50.3

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CCCHHHHHHHHHHHCCCH
Q ss_conf             9985229989999999993884199989-58999999999832998999999995999-99-922699999999945997
Q 003710          538 SSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDI  614 (801)
Q Consensus       538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~  614 (801)
                      ..+.+.|++++|...|+...+.   .|+ ...|..+..+|...|++++|.+.+++... .| +...|..+..++...|+.
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf             9999958999999986602110---0011333245678887405421288889999987544668779999999994999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             999999999970299993269999999
Q 003710          615 VSAEFAARHVLSSAQDNTGCYVLLSNM  641 (801)
Q Consensus       615 ~~a~~~~~~~~~~~p~~~~~~~~l~~~  641 (801)
                      ++|...+++++++.|.+...+..+..+
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999998999987299979999999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.3e-05  Score=47.44  Aligned_cols=81  Identities=11%  Similarity=0.057  Sum_probs=30.5

Q ss_pred             HHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             83299899999999599999922699999999945997999999999970299993269999999997399069999999
Q 003710          577 GRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA  656 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~  656 (801)
                      ...|++++|++.+.++. .|+..+|..+...+...|+++.|+..++++++++|.++..|..++.+|.+.|++++|...++
T Consensus        16 ~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~   94 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK   94 (192)
T ss_dssp             HHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             98779999999998648-98899999999999985891467878999999855234667889999985424999999999


Q ss_pred             HH
Q ss_conf             99
Q 003710          657 IM  658 (801)
Q Consensus       657 ~m  658 (801)
                      +.
T Consensus        95 kA   96 (192)
T d1hh8a_          95 EA   96 (192)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=0.00037  Score=42.21  Aligned_cols=89  Identities=11%  Similarity=-0.028  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCC-CCCC--------CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-----
Q ss_conf             999999999832998999999995999-9992--------26999999999459979999999999702999932-----
Q 003710          568 HYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA--------RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG-----  633 (801)
Q Consensus       568 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----  633 (801)
                      .+..+..++...|++++|.+.+++... .++.        ..+...+..+...|+.+.|...+++..+.+|....     
T Consensus       160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~  239 (290)
T d1qqea_         160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN  239 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             88999999998173999999999999868133245556999999999999984659999999999997597744439999


Q ss_pred             HHHHHHHHHHH--CCCCHHHHHHHH
Q ss_conf             69999999997--399069999999
Q 003710          634 CYVLLSNMYAE--AGRWEDVEQIKA  656 (801)
Q Consensus       634 ~~~~l~~~y~~--~g~~~~a~~~~~  656 (801)
                      ....++..|..  .+++++|...++
T Consensus       240 ~l~~l~~a~~~~d~e~~~eai~~y~  264 (290)
T d1qqea_         240 FLKSLIDAVNEGDSEQLSEHCKEFD  264 (290)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             9999999998368999999999998

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=4.6e-05  Score=48.36  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=41.3

Q ss_pred             HHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf             999832998999999995999--999226999999999459979999999999702999932699999999973990699
Q 003710          574 DLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDV  651 (801)
Q Consensus       574 ~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a  651 (801)
                      ..+.+.|++++|...+++...  +.+...|..+..++...|+.+.|...++++++++|.++..|..++.+|...|++++|
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999699999999999988619960134300011011000011210013467774022026778899999981279999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999997
Q 003710          652 EQIKAIMEK  660 (801)
Q Consensus       652 ~~~~~~m~~  660 (801)
                      ...++...+
T Consensus        91 ~~~~~~a~~   99 (117)
T d1elwa_          91 KRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
T ss_conf             999999998

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00023  Score=43.63  Aligned_cols=81  Identities=12%  Similarity=-0.053  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999999832998999999995999-99-9226999999999459979999999999702999932699999999973
Q 003710          568 HYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA  645 (801)
Q Consensus       568 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~  645 (801)
                      .|..+..+|.+.|++++|...+++... .| +...|..+..++...|+.+.|...++++++++|.+..+...+..++...
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999886421101100000001002231034677799998722299999999999972989899999999999999


Q ss_pred             CCC
Q ss_conf             990
Q 003710          646 GRW  648 (801)
Q Consensus       646 g~~  648 (801)
                      +..
T Consensus       144 ~~~  146 (170)
T d1p5qa1         144 RRQ  146 (170)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.5e-05  Score=46.92  Aligned_cols=90  Identities=11%  Similarity=0.012  Sum_probs=56.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf             99999832998999999995999--9992269999999994599799999999997029999326999999999739906
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWE  649 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~  649 (801)
                      ....|.+.|++++|...+++...  +.+...|..+...+...|+.+.|...++++++++|.+...+..++.+|...|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             99999995899999998660211000113332456788874054212888899999875446687799999999949999


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999977
Q 003710          650 DVEQIKAIMEKE  661 (801)
Q Consensus       650 ~a~~~~~~m~~~  661 (801)
                      +|...++.....
T Consensus        96 eA~~~~~~a~~~  107 (159)
T d1a17a_          96 AALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC
T ss_conf             999989999872

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.8e-05  Score=46.81  Aligned_cols=104  Identities=15%  Similarity=0.027  Sum_probs=68.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCC
Q ss_conf             99985229989999999993884199989-58999999999832998999999995999--9992269999999994599
Q 003710          537 LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNND  613 (801)
Q Consensus       537 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~  613 (801)
                      ...+...|++++|...|+...+.   .|+ ...|..+..+|...|++++|...++....  +.+...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999969999999999998861---996013430001101100001121001346777402202677889999998127


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             799999999997029999326999999999
Q 003710          614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      .+.|...++++++.+|.++..+..+.++-+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             999999999999849898999999997838

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3e-06  Score=56.56  Aligned_cols=20  Identities=10%  Similarity=-0.029  Sum_probs=6.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999998479915899999
Q 003710          305 NAMVGGYVVNAHFLESFSCL  324 (801)
Q Consensus       305 ~~li~~~~~~g~~~~A~~~~  324 (801)
                      +.+...+...|+..+|+..|
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y  209 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999869999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.75  E-value=6.2e-05  Score=47.51  Aligned_cols=88  Identities=14%  Similarity=0.018  Sum_probs=68.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCC-CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999999832998999999995999-99-9226999999999459979999999999702999932699999999973990
Q 003710          571 CIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRW  648 (801)
Q Consensus       571 ~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~  648 (801)
                      .++..+.+.|++++|...+++... .| +...|..+..++...|+.+.|+..++++++++|.+...+..++..|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf             99999998760589999886101121111001233545641012587741000001111110000037899999997899


Q ss_pred             HHHHHHHHHH
Q ss_conf             6999999999
Q 003710          649 EDVEQIKAIM  658 (801)
Q Consensus       649 ~~a~~~~~~m  658 (801)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.72  E-value=0.00093  Score=39.43  Aligned_cols=76  Identities=11%  Similarity=-0.022  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999832998999999995999--99922699999999945997999999999970299993269999999997
Q 003710          569 YGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE  644 (801)
Q Consensus       569 ~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~  644 (801)
                      |..+..+|.+.|++++|+..++....  +.+...|..+..++...|+++.|...++++++++|++..+...+..+...
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             984999987762201100022322201310488999889999882789999999999998598989999999999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00022  Score=43.70  Aligned_cols=105  Identities=12%  Similarity=-0.071  Sum_probs=71.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCH---HHHHHHHHHCCC-CCCC---CHHHHHHH
Q ss_conf             9999985229989999999993884199989-58999999999832998---999999995999-9992---26999999
Q 003710          535 SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNL---DQAKRFIEEMPS-APTA---RIWGALLT  606 (801)
Q Consensus       535 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~---~eA~~~~~~m~~-~p~~---~~~~~ll~  606 (801)
                      .+++.+...+++++|.+.|+.....   .|+ ..++..+..++.+.++.   ++|..++++... .|+.   ..|..|..
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             7988736999999999999998832---9998999999999999851267899999999999860699319999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             999459979999999999702999932699999999
Q 003710          607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY  642 (801)
Q Consensus       607 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y  642 (801)
                      ++...|+.+.|+..++++++++|++......+..+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999973169999999999976909899999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.59  E-value=0.00063  Score=40.61  Aligned_cols=60  Identities=10%  Similarity=-0.051  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999459979999999999702999932699999999973990699999999997
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      |..+..++...|+.+.|...++++++++|.++..|..++.+|...|++++|...++...+
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             998999998640210136665544310002236777699999980479999999999998

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.0014  Score=38.29  Aligned_cols=63  Identities=10%  Similarity=-0.116  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             699999999945997999999999970299993269999999997399069999999999779
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      ++..+..++...|+++.|+..++++++++|.++..+..++.+|...|++++|...++...+..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999998864211011000000010022310346777999987222999999999999729

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.49  E-value=0.0023  Score=36.77  Aligned_cols=60  Identities=22%  Similarity=0.052  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999459979999999999702999932699999999973990699999999997
Q 003710          601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      +..+..++...|+++.|...++++++++|.+..+|..++.+|...|++++|...++...+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             961999999846530111010001000000012467768999996899999999999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0009  Score=39.55  Aligned_cols=18  Identities=17%  Similarity=0.016  Sum_probs=5.6

Q ss_pred             HHHHHHHHHCCCCHHHHH
Q ss_conf             999999999069969999
Q 003710          375 ETALIDMYAGSGALKMTE  392 (801)
Q Consensus       375 ~~~li~~~~~~g~~~~A~  392 (801)
                      ++.|...|...|+..+|.
T Consensus       189 ~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHH
T ss_conf             999999999869999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.40  E-value=0.0033  Score=35.69  Aligned_cols=126  Identities=7%  Similarity=-0.151  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             89999999999729989999999999988999898999999999852299899999999938841999895899999999
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL  575 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~  575 (801)
                      ..+......+...|++.+|+..|.+....  .|...           ...-.........+        ....|..+..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKNI--------EISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHH-----------HHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_conf             99999999999959999999999987760--73001-----------11057788763107--------88999619999


Q ss_pred             HHHCCCHHHHHHHHHHCCC-C-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             9832998999999995999-9-99226999999999459979999999999702999932699999999
Q 003710          576 LGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY  642 (801)
Q Consensus       576 ~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y  642 (801)
                      |.+.|++++|++.++.... . .+...|..+..++...|+++.|...++++++++|.+..+...+..+.
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             998465301110100010000000124677689999968999999999999982989899999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.38  E-value=0.0015  Score=38.00  Aligned_cols=83  Identities=7%  Similarity=-0.105  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             58999999999832998999999995999--9992269999999994599799999999997029999326999999999
Q 003710          566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA  643 (801)
Q Consensus       566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~  643 (801)
                      ...+..+..++.+.|++++|+..+++...  +.+...|..+..++...|+.+.|...++++++++|++..++..+..++.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999899999864021013666554431000223677769999998047999999999999859899999999999999


Q ss_pred             HCCCC
Q ss_conf             73990
Q 003710          644 EAGRW  648 (801)
Q Consensus       644 ~~g~~  648 (801)
                      .....
T Consensus       157 ~l~~~  161 (169)
T d1ihga1         157 KIKAQ  161 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99989

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=0.0017  Score=37.73  Aligned_cols=60  Identities=10%  Similarity=-0.069  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             699999999945997999999999970299993269999999997399069999999999
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME  659 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~  659 (801)
                      .+..+...+...|+.+.|...++++++.+|.+...|..++.+|...|++.+|.+.|+.+.
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999999887990578999999998498519999999999998557999999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.0039  Score=35.19  Aligned_cols=81  Identities=11%  Similarity=-0.091  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----CCCCHHHH
Q ss_conf             989999999959999992269999999994----5997999999999970299993269999999997----39906999
Q 003710          581 NLDQAKRFIEEMPSAPTARIWGALLTASRK----NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE----AGRWEDVE  652 (801)
Q Consensus       581 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~  652 (801)
                      ....+..+++......+...+..|...+..    ..|.+.|...+++..+.+  ++..+..|+.+|..    ..+.++|.
T Consensus       161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~  238 (265)
T d1ouva_         161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAI  238 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred             CCCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             4220001221132322223322113121267654310344454676653036--89999999999983999761899999


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999997798
Q 003710          653 QIKAIMEKEGL  663 (801)
Q Consensus       653 ~~~~~m~~~g~  663 (801)
                      +.+++..+.|.
T Consensus       239 ~~~~kAa~~g~  249 (265)
T d1ouva_         239 ENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHCCC
T ss_conf             99999998769

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.28  E-value=0.0015  Score=37.93  Aligned_cols=88  Identities=13%  Similarity=-0.018  Sum_probs=61.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf             9999999972998999999999998899989-899999999985229989999999993884199989-58999999999
Q 003710          499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLL  576 (801)
Q Consensus       499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~  576 (801)
                      ..+...+.+.|++++|+..|++....  .|+ ...|..+..++.+.|++++|...|+...+   +.|+ ...+..+...|
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHH
T ss_conf             99999999876058999988610112--111100123354564101258774100000111---1110000037899999


Q ss_pred             HHCCCHHHHHHHHHH
Q ss_conf             832998999999995
Q 003710          577 GRIGNLDQAKRFIEE  591 (801)
Q Consensus       577 ~~~g~~~eA~~~~~~  591 (801)
                      ...|++++|.+.+++
T Consensus        95 ~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          95 TNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
T ss_conf             997899999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0011  Score=39.02  Aligned_cols=58  Identities=5%  Similarity=-0.063  Sum_probs=25.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999729989999999999988999898999999999852299899999999938
Q 003710          499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR  557 (801)
Q Consensus       499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  557 (801)
                      ..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++.+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999998599999999999998849-6458999868899988186077899999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.13  E-value=0.0065  Score=33.66  Aligned_cols=62  Identities=10%  Similarity=-0.071  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             69999999994599799999999997029999326999999999739906999999999977
Q 003710          600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE  661 (801)
Q Consensus       600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~  661 (801)
                      ++..+..++...|+.+.|...++++++++|.+...|..++.+|...|++++|...++.+.+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99849999877622011000223222013104889998899998827899999999999985

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0071  Score=33.40  Aligned_cols=89  Identities=9%  Similarity=0.098  Sum_probs=42.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-------HHHHHHHHH
Q ss_conf             99999832998999999995999--999226999999999459979999999999702999932-------699999999
Q 003710          572 IIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG-------CYVLLSNMY  642 (801)
Q Consensus       572 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~y  642 (801)
                      +++.+.+.|++++|.+.+++...  +.+...|..+..++...|+++.|...++++++++|.+..       +|..++..+
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999985999999999999988496458999868899988186077899999999868012788988999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHH
Q ss_conf             973990699999999997
Q 003710          643 AEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       643 ~~~g~~~~a~~~~~~m~~  660 (801)
                      ...+++++|.+.++....
T Consensus        90 ~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHH
T ss_conf             993889999999999984

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.09  E-value=0.0016  Score=37.80  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=58.4

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHH
Q ss_conf             972998999999999998899989-899999999985229989999999993884199989-589999999998329989
Q 003710          506 AIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD  583 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~  583 (801)
                      ...|+.++|+..+++.++.  .|+ ...+..+...++..|++++|...++...+   +.|+ ...+..+..++...+..+
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCCH
T ss_conf             8888999999999999997--899999999999999987999999999999998---69973899999999998346637


Q ss_pred             HHHHHHHHCCCCCCCCHHH---HHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999599999922699---999999945997999999999970299993
Q 003710          584 QAKRFIEEMPSAPTARIWG---ALLTASRKNNDIVSAEFAARHVLSSAQDNT  632 (801)
Q Consensus       584 eA~~~~~~m~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  632 (801)
                      ++..-........++..|.   .....+...|+.+.|...++++.+..|...
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             8998754442035864799999999999967998999999999983399998

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.004  Score=35.13  Aligned_cols=22  Identities=9%  Similarity=-0.049  Sum_probs=7.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999739906999999999
Q 003710          637 LLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       637 ~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      .|+.+|...|++++|.+.++.+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999973169999999999

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.66  E-value=0.015  Score=31.09  Aligned_cols=23  Identities=9%  Similarity=0.024  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             89999999998329989999999
Q 003710          567 EHYGCIIDLLGRIGNLDQAKRFI  589 (801)
Q Consensus       567 ~~~~~li~~~~~~g~~~eA~~~~  589 (801)
                      .+..++.++|...++++.-.+.+
T Consensus       281 ~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         281 SVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999986712467899999

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.58  E-value=0.017  Score=30.73  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999998379968999999517999911499999999819993699999999
Q 003710           74 ALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHR  124 (801)
Q Consensus        74 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  124 (801)
                      ..+.+.+.|.++.|..+|..+.     -|..++..+.+.++++.|.+++.+
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k   65 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK   65 (336)
T ss_dssp             ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHCC-----CHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9999987877999999998678-----999999999703159999999988

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.52  E-value=0.0013  Score=38.47  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=82.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CCCC-CHHHHHHHHHHHCCCHHH
Q ss_conf             85229989999999993884199989-58999999999832998999999995999-9992-269999999994599799
Q 003710          540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA-RIWGALLTASRKNNDIVS  616 (801)
Q Consensus       540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ll~~~~~~g~~~~  616 (801)
                      ....|++++|...++...+   ..|+ ...+..+..+|+..|++++|...++.... .|+. ..+..+...+...+..+.
T Consensus         6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf             9888899999999999999---7899999999999999987999999999999998699738999999999983466378


Q ss_pred             HHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             999999997-0299993269999999997399069999999999779
Q 003710          617 AEFAARHVL-SSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG  662 (801)
Q Consensus       617 a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g  662 (801)
                      +........ ..+|++...+...+..+...|+.++|...+..+.+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             99875444203586479999999999996799899999999998339

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.024  Score=29.81  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCHHHH
Q ss_conf             899999999997299899999999999889998989999999998522998999999999388----41999895899
Q 003710          496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRK----DYGIVPGIEHY  569 (801)
Q Consensus       496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~  569 (801)
                      ..|..++..+...|++++|+..++++.... +-+...+..++.++...|+..+|.+.|+.+.+    +.|+.|...+-
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             999999999988799057899999999849-85199999999999985579999999999999989984899689999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.0019  Score=37.33  Aligned_cols=124  Identities=19%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHC----------CCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf             7299899999999999889998989-99999999852----------29989999999993884199989-589999999
Q 003710          507 IHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSI----------SGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID  574 (801)
Q Consensus       507 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~  574 (801)
                      +.+.+++|++.|+...+  +.|+.. .+..+..++..          .+.+++|+..|+...+   +.|+ ...|..+..
T Consensus         9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHH
T ss_conf             87369999999999986--18831089999999998762133336778878889999999887---30120587766899


Q ss_pred             HHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             99832998999999995999999226999999999459979999999999702999932699999999973990699999
Q 003710          575 LLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI  654 (801)
Q Consensus       575 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~  654 (801)
                      +|...|++.            ++...         ..++++.|...++++++++|.+...+..|....       .|.++
T Consensus        84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~  135 (145)
T d1zu2a1          84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL  135 (145)
T ss_dssp             HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred             HHHHCCCCH------------HHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-------HHHHH
T ss_conf             998701011------------35788---------988678763121100025988899999999999-------97978


Q ss_pred             HHHHHHCCC
Q ss_conf             999997798
Q 003710          655 KAIMEKEGL  663 (801)
Q Consensus       655 ~~~m~~~g~  663 (801)
                      ..+..++|+
T Consensus       136 ~~e~~k~~~  144 (145)
T d1zu2a1         136 HAEAYKQGL  144 (145)
T ss_dssp             HHHHHHSSS
T ss_pred             HHHHHHHHC
T ss_conf             999998735

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.94  E-value=0.037  Score=28.49  Aligned_cols=27  Identities=7%  Similarity=-0.128  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             699999999973990699999999997
Q 003710          634 CYVLLSNMYAEAGRWEDVEQIKAIMEK  660 (801)
Q Consensus       634 ~~~~l~~~y~~~g~~~~a~~~~~~m~~  660 (801)
                      .+..++.+|...|++++|...++...+
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             775269999988888888999999998

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.86  E-value=0.0041  Score=35.01  Aligned_cols=95  Identities=9%  Similarity=-0.027  Sum_probs=55.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf             5229989999999993884199989-589999999998329989999999959999992269999999994599799999
Q 003710          541 SISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEF  619 (801)
Q Consensus       541 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~  619 (801)
                      -+.+.+++|...|+...+   +.|+ ...+..+..++...+++..+.+-                      .+.++.|..
T Consensus         8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~----------------------~~~~~~Ai~   62 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDA----------------------KQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHH----------------------HHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH
T ss_conf             987369999999999986---1883108999999999876213333677----------------------887888999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHH
Q ss_conf             9999970299993269999999997399-----------0699999999997
Q 003710          620 AARHVLSSAQDNTGCYVLLSNMYAEAGR-----------WEDVEQIKAIMEK  660 (801)
Q Consensus       620 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~~  660 (801)
                      .++++++++|++...|..++.+|...|+           +++|.+.++...+
T Consensus        63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999887301205877668999987010113578898867876312110002

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.67  E-value=0.047  Score=27.75  Aligned_cols=18  Identities=11%  Similarity=-0.064  Sum_probs=7.6

Q ss_pred             HHCCCHHHHHHHHHHHHH
Q ss_conf             972998999999999998
Q 003710          506 AIHGLGKISIQLFSEMRE  523 (801)
Q Consensus       506 ~~~g~~~~A~~l~~~m~~  523 (801)
                      ...|++++|++.|++.++
T Consensus        20 ~~~g~y~~Ai~~y~~Al~   37 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAME   37 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
T ss_conf             985999999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.044  Score=27.98  Aligned_cols=70  Identities=10%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCC--------CCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             9999999832998999999995999--------999-226999999999459979999999999702999932699999
Q 003710          570 GCIIDLLGRIGNLDQAKRFIEEMPS--------APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLS  639 (801)
Q Consensus       570 ~~li~~~~~~g~~~eA~~~~~~m~~--------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  639 (801)
                      -.++..+.+.|++++|...+++...        .++ ..++..|..++...|+.+.|...++++++++|.+..++..+.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9999999997799999999999999886530147647899998726888657739888788779886929799999999

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.15  Score=24.37  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999999739906999999999
Q 003710          635 YVLLSNMYAEAGRWEDVEQIKAIM  658 (801)
Q Consensus       635 ~~~l~~~y~~~g~~~~a~~~~~~m  658 (801)
                      +..|+.+|.+.|++++|...++++
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             998726888657739888788779