Citrus Sinensis ID: 003721

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800

MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIHTILHPKPKLQSKKKSGRDRKTNYKAEFENDRERSGRYCKSNPPMLKDMPVSRMGGVSGVLASNEYPRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA

cccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHcccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHcccccccccccEEEEEccccccccccccEEEEEcccccccccccccccccEEccccccHHcccccccccccccccccEEcccHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHccccccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHcccccccccHHHcccccHHccccccccccccHccEEEEEEcccccHccccEEEcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEcccHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEHccccHHHHHHHcccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEEcccccccccEEEEcEccHHHHHHccccccccccccEEEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHHHHHHcccccccccHHcHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHcccccEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHc

maldngirELTYLSLLSKICSELETHLGFIDKVLAEFISesgrnsetvEIFDDKLKEYGADLPNYLVRTLFNVIHtilhpkpklqskkksgrdrktnykaefendrersgrycksnppmlkdmpvsrmggvsgvlasneyprydeeeeegfaswaegdeEELEIElsedqpaflqgqtrvsvdlspvkvfknpegslsRTAALQSALTKERREVREQQLRTMIDsipkdlnrpwedpmpetgeRHLAQELRgvglsardmpewkknaygkaftfgqrsklSIQEQRRSLPIFKLKNELIQAVHDNQVLILIgetgsgktTQLAQYLAEAgyttkgkigctqprrVAATSVAKRVAEEFGCRlgeevgyairfedctgpdtVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATldaerfsgyffncnifsipgrtfpvdinysrqeVTDYLDSALITVLQihvdepegdILLFLTGQEEIDFACESLCEKIKALgkdvpelvvlpvysalpseiqsrifepappggrkvvVATNIaeasltidgifyvidpgfakqnvynpkqrldslvitpISQASALQRagragrtgpgkcyrlytesayrsemspttipeiqRINLVHTTLTMKAMGINnllsfdfvdppspqALISAMEQLYSLGALDEEGLLTKLGKKmaefpldpplskmLLASVDLGCSDEILTIIAMIQTGhiftrprerqAKADEKRArffqpegdhLTLLAVYEAWKaknfslpwcgenfvnsrslkkta

MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFisesgrnsetVEIFDDKLKEYGADLPNYLVRTLFNVIHTilhpkpklqskkksgrdrktnykaefendrersgrycksnppmlkdmpvsrMGGVSGVLASNEYPRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKvfknpegslsrtAALQSALTKERREVREQQLrtmidsipkdlnrpwEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAftfgqrsklsiqEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGyttkgkigctqPRRVAATSVAKRVAEEFgcrlgeevgyairfedctgpDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQlvkrrpdlRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQsrifepappggRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASalqragragrtgpgkcYRLYTESAyrsemspttipeiQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRarffqpegdHLTLLAVYEAWKAKNfslpwcgenfvnsrslkkta

MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIHTILHPKPKLQSKKKSGRDRKTNYKAEFENDRERSGRYCKSNPPMLKDMPVSRMGGVSGVLASNEYPRYDeeeeeGFASWAegdeeeleielsedQPAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA

*****GIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIHTILH***************************************************************************************************************************************************************************************WKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA************GPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTR**************FFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFV*********

*****GIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFN**************************************************************L*SNEYPRYDEEEE*********DEEELEIELSEDQPAFLQGQTRVSV*****************************************************************************************************EQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEK******DVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF*****************FQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKK**

MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIHTILHPK***************NYKAEFENDRERSGRYCKSNPPMLKDMPVSRMGGVSGVLASNEYPR**********SWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFKNPEG*******************REQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQ*************GPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPR********KRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVN********

***DNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIHTILHP**********************************SNPPMLKDMPVSRMGGVSGVLASNEYPRYD************GDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRT************WE********************************************LSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS***********GPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKT*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		800	2.2.26 [Sep-21-2011]
Q38953		1168	Probable pre-mRNA-splicin	yes	no	0.832	0.570	0.857	0.0
Q54F05		1160	ATP-dependent RNA helicas	yes	no	0.832	0.574	0.670	0.0
Q14562		1220	ATP-dependent RNA helicas	yes	no	0.832	0.545	0.655	0.0
A2A4P0		1244	ATP-dependent RNA helicas	yes	no	0.832	0.535	0.655	0.0
Q09530		1200	Probable pre-mRNA-splicin	yes	no	0.83	0.553	0.612	0.0
O42643		1168	Pre-mRNA-splicing factor	yes	no	0.828	0.567	0.602	0.0
P24384		1145	Pre-mRNA-splicing factor	yes	no	0.791	0.552	0.549	0.0
Q54MH3		1106	Putative pre-mRNA-splicin	no	no	0.652	0.471	0.590	0.0
Q767K6		1045	Putative pre-mRNA-splicin	no	no	0.65	0.497	0.586	0.0
Q7YR39		1044	Putative pre-mRNA-splicin	no	no	0.652	0.5	0.582	0.0

>sp\|Q38953\|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2	Back alignment and function desciption

 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/667 (85%), Positives = 626/667 (93%), Gaps = 1/667 (0%)

Query: 132  SGVLASNEYPRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFK 191
            SGVL  +E+P YDE+ + G     EG EEELEIE++ED+PAFLQGQTR SVD+SPVK+FK
Sbjct: 359  SGVLRVDEFPMYDEDGD-GMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVKIFK 417

Query: 192  NPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELR 251
            NPEGSLSR AALQSALTKERRE+REQQ RTM+DSIPKDLNRPWEDPMPETGERHLAQELR
Sbjct: 418  NPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELR 477

Query: 252  GVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILI 311
            GVGLSA DMPEWKK+A+GK  TFGQRSKLSIQEQR SLPI+KLK ELIQAVHDNQVL++I
Sbjct: 478  GVGLSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVI 537

Query: 312  GETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIR 371
            GETGSGKTTQ+ QYLAEAGYTTKGKIGCTQPRRVAA SVAKRVAEEFGCRLGEEVGYAIR
Sbjct: 538  GETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR 597

Query: 372  FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR 431
            FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTI+TDVLFGLLK+L+KR
Sbjct: 598  FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKR 657

Query: 432  RPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQI 491
            R DLRLIVTSATLDAE+FSGYFFNCNIF+IPGRTFPV+I Y++Q  TDYLD+ALITVLQI
Sbjct: 658  RLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQI 717

Query: 492  HVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEP 551
            H+ EPEGDIL+FLTGQEEID AC+SL E++K LGK+VPEL++LPVYSALPSE+QSRIF+P
Sbjct: 718  HLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDP 777

Query: 552  APPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQR 611
             PPG RKVVVATNIAEASLTIDGI+YV+DPGFAKQNVYNPKQ L+SLVITPISQASA QR
Sbjct: 778  PPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQR 837

Query: 612  AGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVD 671
            AGRAGRTGPGKCYRLYTESAYR+EM PT+IPEIQRINL  TTLTMKAMGIN+LLSFDF+D
Sbjct: 838  AGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMD 897

Query: 672  PPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILT 731
            PP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT
Sbjct: 898  PPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILT 957

Query: 732  IIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFV 791
            +IAMIQTG+IF RPRE+QA+AD+KRA+FFQPEGDHLTLLAVYEAWKAKNFS PWC ENF+
Sbjct: 958  MIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFI 1017

Query: 792  NSRSLKK 798
             SRSL++
Sbjct: 1018 QSRSLRR 1024

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q54F05\|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1	Back alignment and function description

>sp\|Q14562\|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1	Back alignment and function description

>sp\|A2A4P0\|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1	Back alignment and function description

>sp\|Q09530\|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1	Back alignment and function description

>sp\|O42643\|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp22 PE=1 SV=1	Back alignment and function description

>sp\|P24384\|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP22 PE=1 SV=1	Back alignment and function description

>sp\|Q54MH3\|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1	Back alignment and function description

>sp\|Q767K6\|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1	Back alignment and function description

>sp\|Q7YR39\|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
356569633		945	PREDICTED: probable pre-mRNA-splicing fa	0.98	0.829	0.754	0.0
255539416		1177	ATP-dependent RNA helicase, putative [Ri	0.888	0.604	0.821	0.0
224116862		1171	predicted protein [Populus trichocarpa]	0.833	0.569	0.872	0.0
449482906		1181	PREDICTED: probable pre-mRNA-splicing fa	0.832	0.563	0.875	0.0
449442879		1218	PREDICTED: uncharacterized protein LOC10	0.835	0.548	0.872	0.0
356562391		1197	PREDICTED: probable pre-mRNA-splicing fa	0.833	0.557	0.869	0.0
356552073		1203	PREDICTED: probable pre-mRNA-splicing fa	0.833	0.554	0.869	0.0
359481032		1172	PREDICTED: probable pre-mRNA-splicing fa	0.833	0.569	0.862	0.0
225439092		1175	PREDICTED: probable pre-mRNA-splicing fa	0.833	0.567	0.862	0.0
224120548		1207	predicted protein [Populus trichocarpa]	0.835	0.553	0.855	0.0

>gi\|356569633\|ref\|XP_003553003.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max]	Back alignment and taxonomy information

 Score = 1228 bits (3176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/808 (75%), Positives = 691/808 (85%), Gaps = 24/808 (2%)

Query: 6   GIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNY 65
            + +L YLSLLSK+C+ELE+H G  DKVLAEFI++   +SE ++ F+ KL + GAD+P+Y
Sbjct: 3   ALEDLQYLSLLSKVCTELESHTGTADKVLAEFITDLASSSENLQEFNAKLNDNGADMPDY 62

Query: 66  LVRTLFNVIHTILHPKPKLQSKKKSGRDRKTNYKAEFENDRERSG-RYCKSNPPMLKDMP 124
           LVRTLF +I ++L P P     K         + A F +D E S  R    +   L  + 
Sbjct: 63  LVRTLFTIIRSVLFPNPTSNHLK---------HCANFVHDGESSQLRIIPQDATALSGIS 113

Query: 125 VSRMGGVSGVLASN-EYPRYDEEEE---EGFASWAEGDE----------EELEIELSEDQ 170
           +     VS  L      P   E ++    GF +  E DE          E+LEIEL++D+
Sbjct: 114 IVEKDDVSSSLKKTMNSPEIWEAKQLIASGFLNVEERDEFIYQEEEDAEEDLEIELNQDE 173

Query: 171 PAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDL 230
           PAFLQGQT+ SVD+SPV++FKNPEGSLSR AALQSALTKERREVREQQ RT+ DSIPKDL
Sbjct: 174 PAFLQGQTKYSVDMSPVRIFKNPEGSLSRAAALQSALTKERREVREQQHRTVFDSIPKDL 233

Query: 231 NRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLP 290
           NRPWEDPMPETGER+LA ELRGVGLSA DMPEWKK AYGK  TFG++SKLSIQEQR+SLP
Sbjct: 234 NRPWEDPMPETGERYLAHELRGVGLSAYDMPEWKKEAYGKTITFGRKSKLSIQEQRQSLP 293

Query: 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSV 350
           I+KLK ELIQAVHDNQVL++IGETGSGKTTQ+ QYLAEAGYTTKGKIGCTQPRRVAATSV
Sbjct: 294 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAATSV 353

Query: 351 AKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDE 410
           AKRVAEEFGCRLGEEVGY+I+FE+CTGPDTVIKYMTDGMLLREIL+DENLSQYSVIMLDE
Sbjct: 354 AKRVAEEFGCRLGEEVGYSIQFENCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDE 413

Query: 411 AHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDI 470
           AHERTI TD+LFGLLKQLVKRRP+LRLIVTSATL+AE+FS YFF+CNIF+IPGR FPV+I
Sbjct: 414 AHERTIYTDLLFGLLKQLVKRRPELRLIVTSATLNAEKFSEYFFDCNIFTIPGRMFPVEI 473

Query: 471 NYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPE 530
            Y++Q  +DYLD+ALITVLQIH+ EPEGDILLFLTGQEEIDFAC+SL E++K LGK+VPE
Sbjct: 474 LYAKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLHERMKGLGKNVPE 533

Query: 531 LVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 590
           L++LPVYSALPSE+QSRIFEPAPPG RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN
Sbjct: 534 LIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 593

Query: 591 PKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLV 650
           PKQ LDSLVITPISQASA QRAGRAGRTGPGKCYRLYTESAYR+EMSPTTIPEIQR+N+ 
Sbjct: 594 PKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRVNMA 653

Query: 651 HTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLD 710
            TTL MKAMGIN+LLSFDF+D PS QALISAM QLYSLGALDEEGLLTKLG+KMAEFPLD
Sbjct: 654 TTTLNMKAMGINDLLSFDFMDSPSTQALISAMGQLYSLGALDEEGLLTKLGRKMAEFPLD 713

Query: 711 PPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLL 770
           PPLSKMLLASV+LGCSDEILTII+MIQTG+IF RPRE+QA+AD+KRA+FFQPEGDHLTLL
Sbjct: 714 PPLSKMLLASVELGCSDEILTIISMIQTGNIFHRPREKQAQADQKRAKFFQPEGDHLTLL 773

Query: 771 AVYEAWKAKNFSLPWCGENFVNSRSLKK 798
           A+YEAWKAKNFS PWC ENFV SRSL++
Sbjct: 774 AIYEAWKAKNFSGPWCFENFVQSRSLRR 801

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255539416\|ref\|XP_002510773.1\| ATP-dependent RNA helicase, putative [Ricinus communis] gi\|223551474\|gb\|EEF52960.1\| ATP-dependent RNA helicase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224116862\|ref\|XP_002331832.1\| predicted protein [Populus trichocarpa] gi\|222875070\|gb\|EEF12201.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449482906\|ref\|XP_004156439.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449442879\|ref\|XP_004139208.1\| PREDICTED: uncharacterized protein LOC101216792 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356562391\|ref\|XP_003549455.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356552073\|ref\|XP_003544395.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max]	Back alignment and taxonomy information

>gi\|359481032\|ref\|XP_003632558.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225439092\|ref\|XP_002268542.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224120548\|ref\|XP_002318357.1\| predicted protein [Populus trichocarpa] gi\|222859030\|gb\|EEE96577.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
TAIR\|locus:2088847		1168	AT3G26560 [Arabidopsis thalian	0.832	0.570	0.839	0.0
ZFIN\|ZDB-GENE-050809-39		1210	dhx8 "DEAH (Asp-Glu-Ala-His) b	0.876	0.579	0.626	8.2e-256
UNIPROTKB\|E2R9R9		1216	DHX8 "Uncharacterized protein"	0.866	0.569	0.624	1.8e-255
MGI\|MGI:1306823		1244	Dhx8 "DEAH (Asp-Glu-Ala-His) b	0.866	0.557	0.624	2.2e-253
UNIPROTKB\|F5H658		1181	DHX8 "ATP-dependent RNA helica	0.866	0.586	0.624	2.8e-253
UNIPROTKB\|Q14562		1220	DHX8 "ATP-dependent RNA helica	0.866	0.568	0.624	2.8e-253
UNIPROTKB\|D4A805		1242	Dhx8 "Protein Dhx8" [Rattus no	0.866	0.557	0.624	2.8e-253
UNIPROTKB\|F1MEM4		1230	DHX8 "Uncharacterized protein"	0.866	0.563	0.624	3.6e-253
UNIPROTKB\|F1S1H3		1212	DHX8 "Uncharacterized protein"	0.866	0.571	0.624	3.6e-253
RGD\|1310723		1210	Dhx8 "DEAH (Asp-Glu-Ala-His) b	0.866	0.572	0.624	1.8e-251

TAIR\|locus:2088847 AT3G26560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2883 (1019.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 560/667 (83%), Positives = 610/667 (91%)

Query:   132 SGVLASNEYPRYDXXXXXGFASWAXXXXXXXXXXXXXXQPAFLQGQTRVSVDLSPVKVFK 191
             SGVL  +E+P YD     G                   +PAFLQGQTR SVD+SPVK+FK
Sbjct:   359 SGVLRVDEFPMYDEDGD-GMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVKIFK 417

Query:   192 NPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELR 251
             NPEGSLSR AALQSALTKERRE+REQQ RTM+DSIPKDLNRPWEDPMPETGERHLAQELR
Sbjct:   418 NPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELR 477

Query:   252 GVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILI 311
             GVGLSA DMPEWKK+A+GK  TFGQRSKLSIQEQR SLPI+KLK ELIQAVHDNQVL++I
Sbjct:   478 GVGLSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVI 537

Query:   312 GETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIR 371
             GETGSGKTTQ+ QYLAEAGYTTKGKIGCTQPRRVAA SVAKRVAEEFGCRLGEEVGYAIR
Sbjct:   538 GETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR 597

Query:   372 FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR 431
             FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTI+TDVLFGLLK+L+KR
Sbjct:   598 FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKR 657

Query:   432 RPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQI 491
             R DLRLIVTSATLDAE+FSGYFFNCNIF+IPGRTFPV+I Y++Q  TDYLD+ALITVLQI
Sbjct:   658 RLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQI 717

Query:   492 HVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEP 551
             H+ EPEGDIL+FLTGQEEID AC+SL E++K LGK+VPEL++LPVYSALPSE+QSRIF+P
Sbjct:   718 HLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDP 777

Query:   552 APPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQR 611
              PPG RKVVVATNIAEASLTIDGI+YV+DPGFAKQNVYNPKQ L+SLVITPISQASA QR
Sbjct:   778 PPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQR 837

Query:   612 AGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVD 671
             AGRAGRTGPGKCYRLYTESAYR+EM PT+IPEIQRINL  TTLTMKAMGIN+LLSFDF+D
Sbjct:   838 AGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMD 897

Query:   672 PPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILT 731
             PP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT
Sbjct:   898 PPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILT 957

Query:   732 IIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFV 791
             +IAMIQTG+IF RPRE+QA+AD+KRA+FFQPEGDHLTLLAVYEAWKAKNFS PWC ENF+
Sbjct:   958 MIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFI 1017

Query:   792 NSRSLKK 798
              SRSL++
Sbjct:  1018 QSRSLRR 1024

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

ZFIN\|ZDB-GENE-050809-39 dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R9R9 DHX8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1306823 Dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F5H658 DHX8 "ATP-dependent RNA helicase DHX8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14562 DHX8 "ATP-dependent RNA helicase DHX8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A805 Dhx8 "Protein Dhx8" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MEM4 DHX8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1H3 DHX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310723 Dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38953	DHX8_ARATH	3, ., 6, ., 4, ., 1, 3	0.8575	0.8325	0.5702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.914
3rd Layer	3.6.4	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		800
COG1643		845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	0.0
TIGR01967		1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	1e-140
PRK11131		1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	1e-135
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	2e-96
PRK11664		812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	4e-88
pfam04408		91	pfam04408, HA2, Helicase associated domain (HA2)	8e-40
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-32
smart00847		82	smart00847, HA2, Helicase associated domain (HA2)	9e-32
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	6e-27
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	1e-14
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	5e-13
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	5e-09
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	7e-09
pfam13191		154	pfam13191, AAA_16, AAA ATPase domain	5e-04
COG1203		733	COG1203, COG1203, CRISPR-associated helicase Cas3	0.001
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	0.001

>gnl\|CDD\|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  686 bits (1773), Expect = 0.0
 Identities = 259/541 (47%), Positives = 345/541 (63%), Gaps = 25/541 (4%)

Query: 278 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKI 337
           +   I E R  LP+  +++E+++A+  NQV+I++GETGSGKTTQL Q+L E G    GKI
Sbjct: 38  NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI 97

Query: 338 GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILID 397
           GCTQPRR+AA SVA+RVAEE G +LGE VGY+IRFE    P T IK MTDG+LLREI  D
Sbjct: 98  GCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQND 157

Query: 398 ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDAERFSGYFFNC 456
             LS YSV+++DEAHER++NTD+L GLLK L+  RR DL+LI+ SATLDAERFS YF N 
Sbjct: 158 PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217

Query: 457 NIFSIPGRTFPVDINYSRQEVTDY-LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACE 515
            +  I GRT+PV+I Y  +   DY L  A++  + IH+ E  G IL+FL GQ EI+   E
Sbjct: 218 PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277

Query: 516 SLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI 575
            L +      +   +L +LP+Y AL +E Q R+FEPAP G RKVV+ATNIAE SLTI GI
Sbjct: 278 WLEKA-----ELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGI 332

Query: 576 FYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSE 635
            YVID G AK+  Y+P+  L  L   PIS+ASA QRAGRAGRTGPG CYRLY+E  + + 
Sbjct: 333 RYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA- 391

Query: 636 MSPTTIPEIQRINLVHTTLTMKAMGI-NNLLSFDFVDPPSPQALISAMEQLYSLGALDEE 694
               T+PEI R +L    L +K++GI  ++  F F+DPP   A+ +A+  L  LGALD+ 
Sbjct: 392 FPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDS 451

Query: 695 GLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG---HIFTRPRE-RQA 750
           G LT LGK+M+  PLDP L++MLL + + GC  E  TI +M+        F+R  + R+ 
Sbjct: 452 GKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQ 511

Query: 751 KADEKRARFFQ------PEGDHLTLLAVYEAWKAKNFSLP------WCGENFVNSRSLKK 798
           +  +   +  +      P GDHL LL  +    A+  +         C      +++L +
Sbjct: 512 RTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSR 571

Query: 799 T 799
            
Sbjct: 572 A 572

Length = 845

>gnl\|CDD\|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA	Back alignment and domain information

>gnl\|CDD\|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>gnl\|CDD\|218070 pfam04408, HA2, Helicase associated domain (HA2)	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl\|CDD\|221970 pfam13191, AAA_16, AAA ATPase domain	Back alignment and domain information

>gnl\|CDD\|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		800
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	100.0
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
PHA02653		675	RNA helicase NPH-II; Provisional	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
PTZ00110		545	helicase; Provisional	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
PTZ00424		401	helicase 45; Provisional	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	100.0
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	100.0
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
KOG0347		731	consensus RNA helicase [RNA processing and modific	100.0
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	100.0
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK10689		1147	transcription-repair coupling factor; Provisional	100.0
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	100.0
COG1201		814	Lhr Lhr-like helicases [General function predictio	100.0
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	100.0
KOG0334		997	consensus RNA helicase [RNA processing and modific	100.0
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	100.0
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	100.0
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	100.0
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	100.0
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.98
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.98
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.97
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.97
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.97
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.97
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.97
KOG4284		980	consensus DEAD box protein [Transcription]	99.97
PHA02558		501	uvsW UvsW helicase; Provisional	99.96
COG1205		851	Distinct helicase family with a unique C-terminal	99.96
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.96
KOG0354		746	consensus DEAD-box like helicase [General function	99.96
KOG0327		397	consensus Translation initiation factor 4F, helica	99.96
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.96
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.96
PRK13766		773	Hef nuclease; Provisional	99.96
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.96
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.96
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.96
PRK09401		1176	reverse gyrase; Reviewed	99.95
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.95
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.95
PRK14701		1638	reverse gyrase; Provisional	99.94
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.94
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.94
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.94
PRK05580		679	primosome assembly protein PriA; Validated	99.93
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.93
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.93
PRK09694		878	helicase Cas3; Provisional	99.93
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.93
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.92
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.92
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.92
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.91
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.91
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.91
PRK04914		956	ATP-dependent helicase HepA; Validated	99.87
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.84
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.84
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.84
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.83
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.82
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.82
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.81
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.76
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.75
COG4096		875	HsdR Type I site-specific restriction-modification	99.74
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.74
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	99.74
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.74
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.72
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.7
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.69
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	99.66
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.65
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.62
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.61
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.61
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.6
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	99.59
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.54
PRK05298		652	excinuclease ABC subunit B; Provisional	99.54
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.53
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.52
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.49
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.49
KOG1123		776	consensus RNA polymerase II transcription initiati	99.48
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.47
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.46
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.46
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.45
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	99.43
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.4
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.4
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	99.4
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	99.38
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.31
CHL00122		870	secA preprotein translocase subunit SecA; Validate	99.25
PRK14873		665	primosome assembly protein PriA; Provisional	99.24
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.18
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	99.17
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	99.13
COG4889		1518	Predicted helicase [General function prediction on	99.13
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	99.13
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	99.11
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.96
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.96
KOG0387		923	consensus Transcription-coupled repair protein CSB	98.94
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.89
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	98.84
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.83
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	98.82
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	98.68
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.45
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	98.36
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	98.24
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.21
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	98.2
COG0610		962	Type I site-specific restriction-modification syst	98.14
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.12
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	98.12
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	98.05
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	98.04
PRK12726		407	flagellar biosynthesis regulator FlhF; Provisional	98.04
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	98.02
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.95
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	97.94
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	97.93
PF13245		76	AAA_19: Part of AAA domain	97.87
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	97.8
PRK13889		988	conjugal transfer relaxase TraA; Provisional	97.8
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.78
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	97.78
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	97.76
KOG1002		791	consensus Nucleotide excision repair protein RAD16	97.76
PRK10536		262	hypothetical protein; Provisional	97.74
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	97.72
KOG1803		649	consensus DNA helicase [Replication, recombination	97.71
PRK15483		986	type III restriction-modification system StyLTI en	97.71
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	97.7
PRK10875		615	recD exonuclease V subunit alpha; Provisional	97.67
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	97.63
PRK14974		336	cell division protein FtsY; Provisional	97.63
PRK13826		1102	Dtr system oriT relaxase; Provisional	97.6
KOG2340		698	consensus Uncharacterized conserved protein [Funct	97.54
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.54
PRK04296		190	thymidine kinase; Provisional	97.48
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.47
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.47
PF05970		364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	97.42
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	97.41
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.4
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	97.35
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	97.34
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	97.33
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	97.33
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	97.33
PRK06526		254	transposase; Provisional	97.32
smart00382		148	AAA ATPases associated with a variety of cellular	97.24
PRK10416		318	signal recognition particle-docking protein FtsY;	97.18
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	97.15
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	97.14
TIGR00064		272	ftsY signal recognition particle-docking protein F	97.14
smart00311		74	PWI PWI, domain in splicing factors.	97.05
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	97.03
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.97
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.97
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	96.96
PRK10867		433	signal recognition particle protein; Provisional	96.94
PRK08181		269	transposase; Validated	96.94
TIGR00959		428	ffh signal recognition particle protein. This mode	96.86
COG1444		758	Predicted P-loop ATPase fused to an acetyltransfer	96.83
PF13173		128	AAA_14: AAA domain	96.79
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	96.78
PRK08727		233	hypothetical protein; Validated	96.77
PRK07952		244	DNA replication protein DnaC; Validated	96.73
PF05127		177	Helicase_RecD: Helicase; InterPro: IPR007807 This	96.7
PHA03333		752	putative ATPase subunit of terminase; Provisional	96.67
TIGR01425		429	SRP54_euk signal recognition particle protein SRP5	96.65
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	96.65
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.65
COG0552		340	FtsY Signal recognition particle GTPase [Intracell	96.62
PRK08903		227	DnaA regulatory inactivator Hda; Validated	96.6
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	96.54
PRK06893		229	DNA replication initiation factor; Validated	96.53
PRK00771		437	signal recognition particle protein Srp54; Provisi	96.48
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	96.46
PF05729		166	NACHT: NACHT domain	96.46
PRK06835		329	DNA replication protein DnaC; Validated	96.45
PRK12402		337	replication factor C small subunit 2; Reviewed	96.42
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.36
PHA02533		534	17 large terminase protein; Provisional	96.34
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	96.33
PRK05642		234	DNA replication initiation factor; Validated	96.32
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.31
cd03115		173	SRP The signal recognition particle (SRP) mediates	96.31
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	96.29
PRK08084		235	DNA replication initiation factor; Provisional	96.27
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	96.25
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	96.23
PRK08116		268	hypothetical protein; Validated	96.22
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	96.22
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	96.19
PRK09183		259	transposase/IS protein; Provisional	96.18
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	96.15
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	96.07
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	96.06
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.06
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	95.97
PRK05707		328	DNA polymerase III subunit delta'; Validated	95.95
PRK09112		351	DNA polymerase III subunit delta'; Validated	95.95
COG3587		985	Restriction endonuclease [Defense mechanisms]	95.94
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	95.91
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	95.87
PRK14712		1623	conjugal transfer nickase/helicase TraI; Provision	95.84
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	95.84
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	95.84
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	95.8
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	95.76
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	95.76
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	95.75
PRK00149		450	dnaA chromosomal replication initiation protein; R	95.73
PRK12377		248	putative replication protein; Provisional	95.71
PRK13833		323	conjugal transfer protein TrbB; Provisional	95.67
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.67
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	95.65
COG1484		254	DnaC DNA replication protein [DNA replication, rec	95.65
PRK06921		266	hypothetical protein; Provisional	95.6
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	95.57
PF00004		132	AAA: ATPase family associated with various cellula	95.53
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.52
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	95.52
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	95.47
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	95.41
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.41
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	95.37
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	95.36
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	95.32
PHA02544		316	44 clamp loader, small subunit; Provisional	95.31
PRK13709		1747	conjugal transfer nickase/helicase TraI; Provision	95.3
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.28
PRK08939		306	primosomal protein DnaI; Reviewed	95.26
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.25
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.22
PRK12422		445	chromosomal replication initiation protein; Provis	95.18
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	95.14
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	95.14
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	95.14
PRK06067		234	flagellar accessory protein FlaH; Validated	95.14
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.12
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	95.11
KOG3938		334	consensus RGS-GAIP interacting protein GIPC, conta	95.11
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.09
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	95.07
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	95.06
cd01122		271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.06
PRK11054		684	helD DNA helicase IV; Provisional	95.05
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	95.01
PRK07471		365	DNA polymerase III subunit delta'; Validated	95.01
PRK08533		230	flagellar accessory protein FlaH; Reviewed	95.01
PRK00411		394	cdc6 cell division control protein 6; Reviewed	94.95
CHL00181		287	cbbX CbbX; Provisional	94.94
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.91
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	94.9
PTZ00293		211	thymidine kinase; Provisional	94.89
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	94.89
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	94.86
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	94.82
PRK14087		450	dnaA chromosomal replication initiation protein; P	94.81
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.8
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	94.78
PRK14088		440	dnaA chromosomal replication initiation protein; P	94.78
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	94.74
PLN03025		319	replication factor C subunit; Provisional	94.71
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	94.67
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	94.66
PHA02244		383	ATPase-like protein	94.64
PRK13851		344	type IV secretion system protein VirB11; Provision	94.64
PTZ00112		1164	origin recognition complex 1 protein; Provisional	94.64
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	94.63
PF01480		77	PWI: PWI domain; InterPro: IPR002483 The PWI domai	94.62
PF03354		477	Terminase_1: Phage Terminase ; InterPro: IPR005021	94.6
PRK06620		214	hypothetical protein; Validated	94.57
TIGR01547		396	phage_term_2 phage terminase, large subunit, PBSX	94.56
PRK04195		482	replication factor C large subunit; Provisional	94.54
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	94.48
cd03246		173	ABCC_Protease_Secretion This family represents the	94.47
cd03216		163	ABC_Carb_Monos_I This family represents the domain	94.46
PRK11823		446	DNA repair protein RadA; Provisional	94.46
PRK07940		394	DNA polymerase III subunit delta'; Validated	94.46
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	94.45
KOG1805		1100	consensus DNA replication helicase [Replication, r	94.43
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	94.37
PHA03368		738	DNA packaging terminase subunit 1; Provisional	94.34
COG0541		451	Ffh Signal recognition particle GTPase [Intracellu	94.24
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.23
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	94.22
cd01393		226	recA_like RecA is a bacterial enzyme which has rol	94.21
PRK09087		226	hypothetical protein; Validated	94.19
KOG2036		1011	consensus Predicted P-loop ATPase fused to an acet	94.18
PRK13341		725	recombination factor protein RarA/unknown domain f	94.18
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	94.13
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	94.12
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.12
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	94.1
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	94.09
PRK06964		342	DNA polymerase III subunit delta'; Validated	94.08
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	94.06
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	94.03
PRK14086		617	dnaA chromosomal replication initiation protein; P	94.02
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	93.93
COG3973		747	Superfamily I DNA and RNA helicases [General funct	93.91
PRK08769		319	DNA polymerase III subunit delta'; Validated	93.91
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	93.9
COG4962		355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	93.9
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	93.88
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	93.87
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.83
cd00544		169	CobU Adenosylcobinamide kinase / adenosylcobinamid	93.82
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	93.81
COG2256		436	MGS1 ATPase related to the helicase subunit of the	93.79
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	93.79
TIGR02012		321	tigrfam_recA protein RecA. This model describes or	93.78
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	93.76
PRK13342		413	recombination factor protein RarA; Reviewed	93.73
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	93.7
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	93.68
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	93.62
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	93.62
PRK00440		319	rfc replication factor C small subunit; Reviewed	93.59
PRK05986		191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	93.55
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.52
PRK09354		349	recA recombinase A; Provisional	93.49
cd00561		159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	93.49
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	93.48
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	93.47
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	93.42
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	93.38
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	93.37
COG1435		201	Tdk Thymidine kinase [Nucleotide transport and met	93.37
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.36
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	93.29
PRK08699		325	DNA polymerase III subunit delta'; Validated	93.24
PRK06871		325	DNA polymerase III subunit delta'; Validated	93.24
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	93.21
PF01443		234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.13
TIGR02688		449	conserved hypothetical protein TIGR02688. Members	93.13
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	93.11
PRK04841		903	transcriptional regulator MalT; Provisional	93.11
PF13871		278	Helicase_C_4: Helicase_C-like	93.0
cd00983		325	recA RecA is a bacterial enzyme which has roles in	93.0
PF00158		168	Sigma54_activat: Sigma-54 interaction domain; Inte	92.93
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	92.87
PHA00729		226	NTP-binding motif containing protein	92.86
PF13555		62	AAA_29: P-loop containing region of AAA domain	92.86
TIGR00708		173	cobA cob(I)alamin adenosyltransferase. Alternate n	92.84
TIGR02785		1232	addA_Gpos recombination helicase AddA, Firmicutes	92.82
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	92.81
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	92.76
COG4178		604	ABC-type uncharacterized transport system, permeas	92.76
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	92.75
PF12846		304	AAA_10: AAA-like domain	92.72
COG1702		348	PhoH Phosphate starvation-inducible protein PhoH,	92.62
PRK10865		857	protein disaggregation chaperone; Provisional	92.6
cd03239		178	ABC_SMC_head The structural maintenance of chromos	92.55
PF03237		384	Terminase_6: Terminase-like family; InterPro: IPR0	92.5
KOG4439		901	consensus RNA polymerase II transcription terminat	92.44
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	92.42
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	92.4
PRK08058		329	DNA polymerase III subunit delta'; Validated	92.36
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	92.36
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	92.36
PRK10436		462	hypothetical protein; Provisional	92.34
cd01123		235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	92.27
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	92.2
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	92.14
PRK07399		314	DNA polymerase III subunit delta'; Validated	92.08
PF14532		138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	92.07
PRK06090		319	DNA polymerase III subunit delta'; Validated	91.9
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	91.86
COG2109		198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	91.82
PRK05800		170	cobU adenosylcobinamide kinase/adenosylcobinamide-	91.82
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	91.82
COG2255		332	RuvB Holliday junction resolvasome, helicase subun	91.79
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	91.76
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	91.76
PRK13538		204	cytochrome c biogenesis protein CcmA; Provisional	91.74
COG3598		402	RepA RecA-family ATPase [DNA replication, recombin	91.69
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	91.69
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	91.65
PF03266		168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	91.55
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	91.53
KOG2228		408	consensus Origin recognition complex, subunit 4 [R	91.52
cd03249		238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	91.44
CHL00095		821	clpC Clp protease ATP binding subunit	91.42
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	91.38
TIGR03522		301	GldA_ABC_ATP gliding motility-associated ABC trans	91.36
cd03215		182	ABC_Carb_Monos_II This family represents domain II	91.36
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	91.35
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	91.24
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	91.18
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.15
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	91.09
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	91.04
TIGR02238		313	recomb_DMC1 meiotic recombinase Dmc1. This model d	91.03
TIGR02533		486	type_II_gspE general secretory pathway protein E.	91.03
cd03237		246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	91.02
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	90.92
PRK05973		237	replicative DNA helicase; Provisional	90.92
COG0593		408	DnaA ATPase involved in DNA replication initiation	90.89
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	90.81
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	90.75
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	90.72
PRK05580		679	primosome assembly protein PriA; Validated	90.71
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	90.69
KOG0780		483	consensus Signal recognition particle, subunit Srp	90.61
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	90.58
cd03254		229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	90.56
COG1098		129	VacB Predicted RNA binding protein (contains ribos	90.55
cd00984		242	DnaB_C DnaB helicase C terminal domain. The hexame	90.54
TIGR03819		340	heli_sec_ATPase helicase/secretion neighborhood AT	90.48
KOG2028		554	consensus ATPase related to the helicase subunit o	90.48
PLN03187		344	meiotic recombination protein DMC1 homolog; Provis	90.44
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	90.26
COG4555		245	NatA ABC-type Na+ transport system, ATPase compone	90.25
TIGR03878		259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	90.23
cd03263		220	ABC_subfamily_A The ABCA subfamily mediates the tr	90.22
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	90.21
PRK13764		602	ATPase; Provisional	90.18
TIGR01189		198	ccmA heme ABC exporter, ATP-binding protein CcmA.	90.17
PRK09544		251	znuC high-affinity zinc transporter ATPase; Review	90.16
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	90.14
PRK04301		317	radA DNA repair and recombination protein RadA; Va	90.14
cd03369		207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	90.05
cd03300		232	ABC_PotA_N PotA is an ABC-type transporter and the	90.03
PRK13695		174	putative NTPase; Provisional	89.98
PRK05564		313	DNA polymerase III subunit delta'; Validated	89.98
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	89.97
cd03248		226	ABCC_TAP TAP, the Transporter Associated with Anti	89.94
PF13481		193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	89.93
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	89.92
PRK07993		334	DNA polymerase III subunit delta'; Validated	89.9
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	89.9
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	89.87
PHA00350		399	putative assembly protein	89.82
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	89.81
TIGR02237		209	recomb_radB DNA repair and recombination protein R	89.8
cd03233		202	ABC_PDR_domain1 The pleiotropic drug resistance (P	89.77
TIGR00665		434	DnaB replicative DNA helicase. This model describe	89.76
PF02463		220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	89.75
cd01394		218	radB RadB. The archaeal protein radB shares simila	89.75
TIGR01817		534	nifA Nif-specific regulatory protein. This model r	89.72
PTZ00035		337	Rad51 protein; Provisional	89.71
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	89.69
TIGR00595		505	priA primosomal protein N'. All proteins in this f	89.66

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=3.8e-140  Score=1141.66  Aligned_cols=648  Identities=50%  Similarity=0.854  Sum_probs=590.5

Q ss_pred             ccCccccCCC-CCCchhhhhcccCCCCCCCceeEEEecCCCCCccccceeeeccCCccccccCCCCchHHHHHHhhHHHH
Q 003721          131 VSGVLASNEY-PRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTK  209 (800)
Q Consensus       131 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (800)
                      .|||+.+.|+ ++|++           +++.+  ++|++..||||+|+.+++++.+||.+++||+++||..|++||.+++
T Consensus       216 ~sgvv~~~e~~~~f~~-----------~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~  282 (1042)
T KOG0924|consen  216 TSGVVQRMEVISDFLS-----------DEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVR  282 (1042)
T ss_pred             chhhhhcccccCccch-----------hhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHH
Confidence            8999988775 22222           22222  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcccCCCCCCCCCchhhhHHHHHHhhcCCC-CCCcchHHHhhhc-CCCCcCcCChhHHHHHHh
Q 003721          210 ERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLS-ARDMPEWKKNAYG-KAFTFGQRSKLSIQEQRR  287 (800)
Q Consensus       210 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~  287 (800)
                      ++|+.+++.+..         ..+|....+.+++....++-.+-+-+ .-.-+........ ...........++.+||+
T Consensus       283 ~~r~~~~~~k~~---------~~~~~~~~~~lgn~~glek~~~ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq  353 (1042)
T KOG0924|consen  283 ERREKEERKKAQ---------KKHWKLAGTALGNVMGLEKKNDEDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQ  353 (1042)
T ss_pred             HHHHhhhhhhhh---------hhhhhhcchhhccccccccCcccccccccccchhhhhccccccccccccccchHHHHHh
Confidence            999998877654         34666555554443322211110000 0000000011110 101111233456999999


Q ss_pred             cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee
Q 003721          288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG  367 (800)
Q Consensus       288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg  367 (800)
                      .||++..+.+++..|.+|+++||+|+||||||||++|||++.++..+|.|+|+||||++|+++|+|+++++|..+|..||
T Consensus       354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG  433 (1042)
T KOG0924|consen  354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG  433 (1042)
T ss_pred             hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH
Q 003721          368 YAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE  447 (800)
Q Consensus       368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~  447 (800)
                      |++||++++++.|.|.|||+|+|+++.+.+..|.+|++||+||||||++++|+++++++.++.+|.++++|++|||+++.
T Consensus       434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~  513 (1042)
T KOG0924|consen  434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQ  513 (1042)
T ss_pred             eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 003721          448 RFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKD  527 (800)
Q Consensus       448 ~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~  527 (800)
                      +|++||++||.|.+|||+|||++.|...+..+|++.++.+.++||...++|+||||++++++++.++..+.+.+.++...
T Consensus       514 kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~  593 (1042)
T KOG0924|consen  514 KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA  593 (1042)
T ss_pred             HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988765432


Q ss_pred             -CCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHH
Q 003721          528 -VPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA  606 (800)
Q Consensus       528 -~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~  606 (800)
                       ..++.|+|+|++||.+.|.+||++.+.|.+||||||||||++++||+|.||||+|++|.++|||+.||+.|.+.|+|++
T Consensus       594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A  673 (1042)
T KOG0924|consen  594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA  673 (1042)
T ss_pred             CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence             2379999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 003721          607 SALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLY  686 (800)
Q Consensus       607 ~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~~i~~al~~L~  686 (800)
                      ++.||+|||||+|||.||||||+..|.++|.+.++|||||+||.+++|+||++|+.|++.|+|||||+.+.+.+|+..||
T Consensus       674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw  753 (1042)
T KOG0924|consen  674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLW  753 (1042)
T ss_pred             cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHHHHHHHhhcCCCCCCH
Q 003721          687 SLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDH  766 (800)
Q Consensus       687 ~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~D~  766 (800)
                      .+||||+.|.||++|+.|++|||||.++|||+.++.+||++|||+||+|||++.+|+||++++++++++|++|++++|||
T Consensus       754 ~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDh  833 (1042)
T KOG0924|consen  754 TLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDH  833 (1042)
T ss_pred             HhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHhhcCChhhhhhcC
Q 003721          767 LTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA  800 (800)
Q Consensus       767 ~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~a~  800 (800)
                      |||||||++|++++++..||++||||.++|++|+
T Consensus       834 LTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~ar  867 (1042)
T KOG0924|consen  834 LTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAR  867 (1042)
T ss_pred             hhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999985

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK13826 Dtr system oriT relaxase; Provisional	Back alignment and domain information

>KOG2340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>smart00311 PWI PWI, domain in splicing factors	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>TIGR00959 ffh signal recognition particle protein	Back alignment and domain information

>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>TIGR01425 SRP54_euk signal recognition particle protein SRP54	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PTZ00293 thymidine kinase; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []	Back alignment and domain information

>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase)	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PRK11823 DNA repair protein RadA; Provisional	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>TIGR02012 tigrfam_recA protein RecA	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>PRK09354 recA recombinase A; Provisional	Back alignment and domain information

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases	Back alignment and domain information

>TIGR02688 conserved hypothetical protein TIGR02688	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response	Back alignment and domain information

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PHA00729 NTP-binding motif containing protein	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>TIGR00708 cobA cob(I)alamin adenosyltransferase	Back alignment and domain information

>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PF12846 AAA_10: AAA-like domain	Back alignment and domain information

>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms	Back alignment and domain information

>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]	Back alignment and domain information

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]	Back alignment and domain information

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>PRK05973 replicative DNA helicase; Provisional	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein	Back alignment and domain information

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00984 DnaB_C DnaB helicase C terminal domain	Back alignment and domain information

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase	Back alignment and domain information

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]	Back alignment and domain information

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family	Back alignment and domain information

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13764 ATPase; Provisional	Back alignment and domain information

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA	Back alignment and domain information

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK04301 radA DNA repair and recombination protein RadA; Validated	Back alignment and domain information

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)	Back alignment and domain information

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D	Back alignment and domain information

>PRK13695 putative NTPase; Provisional	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules	Back alignment and domain information

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>PHA00350 putative assembly protein	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02237 recomb_radB DNA repair and recombination protein RadB	Back alignment and domain information

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>TIGR00665 DnaB replicative DNA helicase	Back alignment and domain information

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []	Back alignment and domain information

>cd01394 radB RadB	Back alignment and domain information

>TIGR01817 nifA Nif-specific regulatory protein	Back alignment and domain information

>PTZ00035 Rad51 protein; Provisional	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		800
3kx2_B		767	Crystal Structure Of Prp43p In Complex With Adp Len		1e-164
2xau_A		773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		1e-164
3i4u_A		270	Crystal Structure Analysis Of A Helicase Associated		2e-44
3llm_A		235	Crystal Structure Analysis Of A Rna Helicase Length		1e-32

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Back alignment and structure

Iteration: 1

Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust. Identities = 293/588 (49%), Positives = 407/588 (69%), Gaps = 17/588 (2%) Query: 226 IPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRS----KLS 281 I ++L++ P E H A E +G+ E +K GK F R + Sbjct: 26 IAEELSKQHPLPSEEPLVHHDAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVD 85 Query: 282 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA--EAGYTTKGKIGC 339 I + RR LP+ ++E ++ +NQ+++ +GETGSGKTTQ+ Q++ E + ++ C Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145 Query: 340 TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEN 399 TQPRRVAA SVA+RVAEE +LGEEVGY+IRFE+ T T++KYMTDGMLLRE + D + Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205 Query: 400 LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIF 459 LS+YS I+LDEAHERT+ TD+L GLLKQ+VKRRPDL++I+ SATLDAE+F YF + + Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265 Query: 460 SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE 519 ++PGRT+PV++ Y+ + DYLDSA+ TVLQIH E GDILLFLTG++EI+ A + Sbjct: 266 AVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325 Query: 520 KIKALGKD--VPELVVLPVYSALPSEIQSRIFEPAPPG-----GRKVVVATNIAEASLTI 572 + L ++ L V P+Y +LP Q RIFEPAP GRKVV++TNIAE SLTI Sbjct: 326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385 Query: 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAY 632 DGI YV+DPGF+KQ VYNP+ R++SL+++PIS+ASA QRAGRAGRT PGKC+RLYTE A+ Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 Query: 633 RSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALD 692 + E+ + PEI R NL T L +K +GI++L+ FDF+DPP+P+ ++ A+E+L L LD Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505 Query: 693 EEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKA 752 +EG LT LG+ ++FPLDP L+ ML+ S + CS EILTI+AM+ ++F RP + + +A Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565 Query: 753 DEKRARFFQPEGDHLTLLAVYEAWK---AKNFSL-PWCGENFVNSRSL 796 D+ + F P+GDH+TLL VY A+K A + + WC ++++N RSL Sbjct: 566 DDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSL 613

PyMOL of 3kx2

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Back alignment and structure

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Back alignment and structure

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		800
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	0.0
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	1e-133
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	1e-124
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	1e-118
3llm_A		235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-114
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	1e-111
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	1e-104
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	1e-103
1yks_A		440	Genome polyprotein [contains: flavivirin protease	5e-95
3i4u_A		270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	3e-76
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773	Back alignment and structure

 Score =  998 bits (2582), Expect = 0.0
 Identities = 294/619 (47%), Positives = 409/619 (66%), Gaps = 21/619 (3%)

Query: 197 LSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLS 256
           +       S           +Q   + + + K    P E+P+      H A E +G+   
Sbjct: 1   MGSKRRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLV----HHDAGEFKGLQRH 56

Query: 257 ARDMPEWKKNAYGKAFTFGQR----SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIG 312
                E +K   GK   F  R      + I + RR LP+   ++E ++   +NQ+++ +G
Sbjct: 57  HTSAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVG 116

Query: 313 ETGSGKTTQLAQYLA--EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI 370
           ETGSGKTTQ+ Q++   E  +    ++ CTQPRRVAA SVA+RVAEE   +LGEEVGY+I
Sbjct: 117 ETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSI 176

Query: 371 RFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430
           RFE+ T   T++KYMTDGMLLRE + D +LS+YS I+LDEAHERT+ TD+L GLLKQ+VK
Sbjct: 177 RFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK 236

Query: 431 RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQ 490
           RRPDL++I+ SATLDAE+F  YF +  + ++PGRT+PV++ Y+ +   DYLDSA+ TVLQ
Sbjct: 237 RRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQ 296

Query: 491 IHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGK--DVPELVVLPVYSALPSEIQSRI 548
           IH  E  GDILLFLTG++EI+ A   +  +   L +      L V P+Y +LP   Q RI
Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356

Query: 549 FEPAPPG-----GRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPI 603
           FEPAP       GRKVV++TNIAE SLTIDGI YV+DPGF+KQ VYNP+ R++SL+++PI
Sbjct: 357 FEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416

Query: 604 SQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINN 663
           S+ASA QRAGRAGRT PGKC+RLYTE A++ E+   + PEI R NL  T L +K +GI++
Sbjct: 417 SKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDD 476

Query: 664 LLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDL 723
           L+ FDF+DPP+P+ ++ A+E+L  L  LD+EG LT LG+  ++FPLDP L+ ML+ S + 
Sbjct: 477 LVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF 536

Query: 724 GCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSL 783
            CS EILTI+AM+   ++F RP + + +AD+ +  F  P+GDH+TLL VY A+K+     
Sbjct: 537 QCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYE 596

Query: 784 P----WCGENFVNSRSLKK 798
                WC ++++N RSL  
Sbjct: 597 YGIHKWCRDHYLNYRSLSA 615

PyMOL of 2xau

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		800
d1yksa2		299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	3e-65
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	4e-52
d1a1va1		136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	4e-30
d1yksa1		140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	2e-16
d1wp9a2		286	c.37.1.19 (A:201-486) putative ATP-dependent RNA h	2e-05
d2p6ra3		202	c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus	3e-05
d1gkub1		237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	6e-04
d1khta_		190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	8e-04
d1sgwa_		200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	0.002
d1lkxa_		684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	0.002
d1a1va2		299	c.37.1.14 (A:326-624) HCV helicase domain {Human h	0.002
d1knqa_		171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.004

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  217 bits (554), Expect = 3e-65
 Identities = 48/329 (14%), Positives = 91/329 (27%), Gaps = 51/329 (15%)

Query: 476 EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLP 535
             TD       T     +   +     FL      +    SL +  K+         V+ 
Sbjct: 16  VQTDIPSEPWNTGHDW-ILADKRPTAWFLPSIRAANVMAASLRKAGKS---------VVV 65

Query: 536 VYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFA-KQNVYNPKQR 594
           +           I +         ++AT+IAE    +  +  V+D   A K  + +  ++
Sbjct: 66  LNRKTFEREYPTIKQK----KPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRK 120

Query: 595 LDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQR----INLV 650
           +       IS +SA QR GR GR  P +    Y    Y    S      +      + L 
Sbjct: 121 VAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---YSEPTSENNAHHVCWLEASMLLD 176

Query: 651 HTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLD 710
           +  +    +     +          +  +   ++      +    L   L  ++A+  L 
Sbjct: 177 NMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLK 236

Query: 711 PPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKAD-EKRARFFQPEGDHLTL 769
               K                          F  P E +   D  +  +   P G    L
Sbjct: 237 TNDRKWC------------------------FEGPEEHEILNDSGETVKCRAPGGAKKPL 272

Query: 770 LAVYEAWKAKNFSLPWCGENFVNSRSLKK 798
              +     +  S       F+     ++
Sbjct: 273 RPRW--CDERVSSDQSALSEFIKFAEGRR 299

PyMOL of d1yksa2

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		800
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	100.0
d1yksa2		299	YFV helicase domain {Yellow fever virus [TaxId: 11	100.0
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.9
d1oywa3		200	RecQ helicase domain {Escherichia coli [TaxId: 562	99.9
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.9
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.9
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.89
d1s2ma2		171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.89
d2j0sa2		168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.88
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.87
d1c4oa2		174	Nucleotide excision repair enzyme UvrB {Thermus th	99.87
d1fuka_		162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.87
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.87
d2rb4a1		168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.87
d1hv8a2		155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.87
d1t5la2		181	Nucleotide excision repair enzyme UvrB {Bacillus c	99.87
d1t5ia_		168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.86
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.86
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.86
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.85
d2p6ra4		201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.84
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.83
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	99.81
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.8
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.8
d1jr6a_		138	HCV helicase domain {Human hepatitis C virus (HCV)	99.78
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.76
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.75
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	99.72
d1a1va2		299	HCV helicase domain {Human hepatitis C virus (HCV)	99.71
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.65
d2eyqa5		211	Transcription-repair coupling factor, TRCF {Escher	99.64
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.63
d1gm5a4		206	RecG helicase domain {Thermotoga maritima [TaxId:	99.63
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	99.55
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.52
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	99.51
d1gkub2		248	Helicase-like "domain" of reverse gyrase {Archaeon	99.48
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.28
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	99.03
d1tf5a4		175	Translocation ATPase SecA, nucleotide-binding doma	98.92
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	98.8
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.64
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.57
d1okkd2		207	GTPase domain of the signal recognition particle r	98.5
d2qy9a2		211	GTPase domain of the signal recognition particle r	98.46
d1vmaa2		213	GTPase domain of the signal recognition particle r	98.44
d1ls1a2		207	GTPase domain of the signal sequence recognition p	98.4
d1nkta4		219	Translocation ATPase SecA, nucleotide-binding doma	98.23
d1j8yf2		211	GTPase domain of the signal sequence recognition p	98.17
d1nkta3		288	Translocation ATPase SecA, nucleotide-binding doma	98.03
d1uaaa1		306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.72
d1tf5a3		273	Translocation ATPase SecA, nucleotide-binding doma	97.72
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	97.53
g1qhh.1		623	DEXX box DNA helicase {Bacillus stearothermophilus	97.45
d1pjra1		318	DEXX box DNA helicase {Bacillus stearothermophilus	97.43
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	96.86
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	96.71
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	96.69
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	96.54
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	96.51
d2b8ta1		139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.48
d1g6oa_		323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.46
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	96.45
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	96.41
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	96.19
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.16
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	96.15
d1t5la1		413	Nucleotide excision repair enzyme UvrB {Bacillus c	96.15
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	96.08
d1w36b1		485	Exodeoxyribonuclease V beta chain (RecB), N-termin	96.0
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	95.95
d1xx6a1		141	Thymidine kinase, TK1, N-terminal domain {Clostrid	95.82
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.3
d1e9ra_		433	Bacterial conjugative coupling protein TrwB {Esche	95.14
d1cr2a_		277	Gene 4 protein (g4p, DNA primase), helicase domain	95.12
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	94.99
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	94.93
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	94.81
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	94.75
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	94.71
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	94.6
d1ny5a2		247	Transcriptional activator sigm54 (NtrC1), C-termin	93.96
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	93.59
d1qvra3		315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.53
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.35
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.31
d1tf7a2		242	Circadian clock protein KaiC {Synechococcus sp. st	93.22
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.16
d1vpla_		238	Putative ABC transporter TM0544 {Thermotoga mariti	93.09
d1pzna2		254	DNA repair protein Rad51, catalytic domain {Archae	92.96
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.86
d1r6bx3		315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.84
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.75
d1tf7a1		242	Circadian clock protein KaiC {Synechococcus sp. st	92.65
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.56
d1oxxk2		242	Glucose transport protein GlcV, N-terminal domain	92.41
d1jbka_		195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.38
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	92.34
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	91.99
d1v5wa_		258	Meiotic recombination protein DMC1/LIM15 homolog {	91.93
d1um8a_		364	ClpX {Helicobacter pylori [TaxId: 210]}	91.77
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.59
d1qvra2		387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.56
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	91.43
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	91.32
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.19
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	91.13
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	91.02
d1szpa2		251	DNA repair protein Rad51, catalytic domain {Baker'	90.86
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.83
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.77
d1c4oa1		408	Nucleotide excision repair enzyme UvrB {Thermus th	90.76
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.64
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.55
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	90.52
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	90.33
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	90.33
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	90.2
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	90.14
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	90.04
d1n0wa_		242	DNA repair protein Rad51, catalytic domain {Human	90.03
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	89.98
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	89.97
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	89.85
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	89.81
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	89.8
d1u94a1		263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.75
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	89.63
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	89.55
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.4
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	89.15
d1nn5a_		209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.12
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	89.11
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	88.88
d2awna2		232	Maltose transport protein MalK, N-terminal domain	88.84
d1g2912		240	Maltose transport protein MalK, N-terminal domain	88.77
d1br2a2		710	Myosin S1, motor domain {Chicken (Gallus gallus),	88.67
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	88.42
d1wb9a2		234	DNA repair protein MutS, the C-terminal domain {Es	88.25
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	88.15
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	87.99
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	87.95
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	87.84
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	87.74
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	87.7
d1akya1		180	Adenylate kinase {Baker's yeast (Saccharomyces cer	87.66
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	87.64
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	87.53
d1lkxa_		684	Myosin S1, motor domain {Dictyostelium discoideum,	87.48
d1gkya_		186	Guanylate kinase {Baker's yeast (Saccharomyces cer	87.43
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	87.29
d1d0xa2		712	Myosin S1, motor domain {Dictyostelium discoideum	87.21
d1nlfa_		274	Hexameric replicative helicase repA {Escherichia c	87.13
d2mysa2		794	Myosin S1, motor domain {Chicken (Gallus gallus),	87.08
d2i1qa2		258	DNA repair protein Rad51, catalytic domain {Archae	86.97
d2p6ra1		85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.93
d1yj5a2		172	5' polynucleotide kinase-3' phosphatase, C-termina	86.67
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	86.63
d1mp1a_		111	Ser/Arg-related nuclear matrix protein srm160 {Hum	86.62
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	86.61
d1w7ja2		730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.3
d1lvga_		190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	86.0
d1d2na_		246	Hexamerization domain of N-ethylmalemide-sensitive	85.56
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	85.44
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	85.44
d1kgda_		178	Guanylate kinase-like domain of Cask {Human (Homo	85.37
d1mo6a1		269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.97
d1xp8a1		268	RecA protein, ATPase-domain {Deinococcus radiodura	84.9
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	84.74
d1yrba1		244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	84.7
d1kk8a2		789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.57
d1go3e1		106	C-terminal domain of RNA polymerase II subunit RBP	84.45
d2a5yb3		277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	83.8
d2onka1		240	Molybdate/tungstate import ATP-binding protein Wtp	83.78
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	83.71
d1g5ta_		157	ATP:corrinoid adenosyltransferase CobA {Salmonella	83.49
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	83.41
d1xbta1		133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.92
d1w5sa2		287	CDC6-like protein APE0152, N-terminal domain {Aero	82.75
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	82.62
d1gsia_		208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	82.17
d1uj2a_		213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	81.88
d1g6ha_		254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	81.87
d1w1wa_		427	Smc head domain {Baker's yeast (Saccharomyces cere	80.92
d1nija1		222	Hypothetical protein YjiA, N-terminal domain {Esch	80.84
d1sroa_		76	S1 RNA-binding domain of polyribonucleotide phosph	80.49
d1bg2a_		323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	80.45
d2vp4a1		197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	80.07

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=4.3e-41  Score=276.74  Aligned_cols=295  Identities=17%  Similarity=0.163  Sum_probs=212.8

Q ss_pred             HHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             99809939999168984699999999995001899699943258999999999999959944623100120011369981
Q 003721          301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT  380 (800)
Q Consensus       301 ~i~~~~~vii~apTGSGKTt~~~~~lle~~~~~~~~il~~~P~r~la~qva~rva~~~g~~~g~~vG~~ir~~~~~~~~~  380 (800)
                      ++.+++++++.||||||||+++..++++.....+.+++|++|+|+||.|+++++.... .   ....  .......+..+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~-~---~~~~--~~~~~~~~~~~   78 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP-I---RYQT--PAIRAEHTGRE   78 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSC-C---BCCC----------CCC
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-C---CEEE--EEEEECCCCCC
T ss_conf             8646994999979999787999999999987269989998238999999999985487-5---2111--37850125765


Q ss_pred             EEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
Q ss_conf             69995508899998308799998129983468679780169999999985099933999615789588963632898656
Q 003721          381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFS  460 (800)
Q Consensus       381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~llk~l~~~~~~~kiI~lSATl~~~~~~~~f~~~~~~~  460 (800)
                      .+.++|++.+...+..+..+.++++||+||+|....+.....++++.... +++.+++++|||++.....          
T Consensus        79 ~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~~~~~~~----------  147 (305)
T d2bmfa2          79 IVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATPPGSRDP----------  147 (305)
T ss_dssp             SEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----------
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCEEE----------
T ss_conf             30137748999998458531540089853011125205788899998416-6531389941578764334----------


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             89972121577404650005999999999975129998899992999999999999999999608999981899973999
Q 003721          461 IPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL  540 (800)
Q Consensus       461 i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~i~~lhs~l  540 (800)
                      ......++.......+...... .    . ......++++||||+++++++.+++.|.+.         +..+.++||++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~l~~~~  212 (305)
T d2bmfa2         148 FPQSNAPIMDEEREIPERSWNS-G----H-EWVTDFKGKTVWFVPSIKAGNDIAACLRKN---------GKKVIQLSRKT  212 (305)
T ss_dssp             SCCCSSCEEEEECCCCCSCCSS-C----C-HHHHSSCSCEEEECSCHHHHHHHHHHHHHH---------TCCCEECCTTC
T ss_pred             ECCCCCCCEEEEEECCHHHHHH-H----H-HHHHHHCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEECCCC
T ss_conf             0234786127998615888999-9----9-999960799899963099999999999867---------99899957838


Q ss_pred             CHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCCEEEEEECCCCCC--EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             9999986517499999539995641100389899569990898554--00067789654343205998699883613999
Q 003721          541 PSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ--NVYNPKQRLDSLVITPISQASALQRAGRAGRT  618 (800)
Q Consensus       541 ~~~~r~~i~~~f~~g~~kVlVAT~iae~GIdIp~v~~VId~g~~k~--~~y~~~~~~~~l~~~p~S~~~~~QR~GRaGR~  618 (800)
                      +...+    ..+++|.++++|||+++++|+|+ +++.|||+|....  -.|++..+...+...|+|.++|.||+||+||.
T Consensus       213 ~~~~~----~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~  287 (305)
T d2bmfa2         213 FDSEY----IKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRN  287 (305)
T ss_dssp             HHHHG----GGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCS
T ss_pred             HHHHH----HHHHCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf             47777----54310001135556788725788-84089975874146573389876388044569988983241186828


Q ss_pred             CCCE-EEECCCHHHH
Q ss_conf             9976-9990383776
Q 003721          619 GPGK-CYRLYTESAY  632 (800)
Q Consensus       619 g~G~-~~~L~t~~~~  632 (800)
                      |.|. ...+|.....
T Consensus       288 ~~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         288 PKNENDQYIYMGEPL  302 (305)
T ss_dssp             SSCCCEEEEECSCCC
T ss_pred             CCCCEEEEEECCCCC
T ss_conf             999269999899888

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}	Back information, alignment and structure

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}	Back information, alignment and structure

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}	Back information, alignment and structure

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}	Back information, alignment and structure

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}	Back information, alignment and structure

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure