Citrus Sinensis ID: 003745

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80

MSVVSAAGSFEESPTRSVGSVSERSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

cccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc

ccHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHcHHcccccEccccHHHcccEEEEEcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHcccccHEEEcHHHHHHHHHHHHEHcccccHHHHHHHHccHccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHccHHccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccHcccccccccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

msvvsaagsfeesptrsvgsvsersgplanlrgvkwrinlgilpssyssiEDLRRVTADSRRRYAEIRRHLlvdphwhkdgsnspdlvmdnplsqnpdstwgrffrSAELEKMVDQdlsrlypehgsyfqtpgcqGMLRRILLLWCLrhpefgyrqGMHELLAPLLYVLHVDVERLSqvrnehedhftdkfdglsfhendltynfDFKKFLDSMEDEigshgnsvkvrsvdeldpeIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDAlmvgsqgsvsmadffahshadgsltcLLPVIEASSAMYHLLSVADSSLHSHLVELgvepqyfgLRWLRVLFGREFSLGDLLIIWDEifasdsskvnkdteddagsgfgilssPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLlnfpvninlKKIIGKTKSLQALALdanlssssppfsgvynqnnpmvvrgsslpsesisprtplnvvpdsywegkwrDLHKAeeqrhdssgkqnqTQKKRWLEKVKLRLsrtesdptprtvdngtkhsrSSIRRSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsderyltgnagseesssifsdpaspvsgandnendsekssvasnssvdendrqshtmpespplpvsqtpddivkdsqsnndsleKSQTVRKVLSGKFQWFWkfgrnsageetsekggvaTETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

msvvsaagsfeesptrsvgsvsersgplanlrgvkwrinlgilpssyssiedlRRVTADSRRRYAEIRrhllvdphwhkdGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDhftdkfdglsfheNDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAgsgfgilsspRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSlpsesisprtplnvvpdSYWEGKWRDLHKAeeqrhdssgkqnqtqkkrwlekvklrlsrtesdptprtvdngtkhsrssirrSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsdeRYLTgnagseesssifsdPASPVSGANDNENDSEKSSVAsnssvdendrqshtmpespplpvsqTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFgrnsageetsekggVATETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

MSVVSAAGSFEESPTRSVGSVSERSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKslqalaldanlssssPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNEndsekssvasnssvdendRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGAssndgscksssssKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

****************************ANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWH**********************WGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSM************VRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA*****************FGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALAL****************************************VVPDSYWEGKW******************************************************************************************************************************************************************************************************KVLSGKFQWFWKFG**********************************************************TLKNLGQSMLEHIQVTFSFCTLICMFENTS*****

***********ESPT*SVGSVSERSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPH***************************FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQA***************************************************************************************************************************************************************************************************************************************************************************************************************************************NLGQSMLEHIQVTFSFCTLICMFENTSL****

**************************PLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLH******************KRWLEKVKLRL**********************IRRSLLEDLSKELGFEEDSEKDGILEVS****************SVNREFACTSDERYLT**********************************************************SQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNS***********ATETKISAN****************************VDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

************SPTRSVGSVSERSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHW*********LVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNN****************RTPLNVVPDSYWEGKWRDLHKA*****************RWLEKVKLRLSR********************************LG*********************************************************************************************************************************KVLSGKFQWFWKFGR************************************************ETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		798	2.2.26 [Sep-21-2011]
Q92609		795	TBC1 domain family member	yes	no	0.404	0.406	0.290	5e-36
Q80XQ2		815	TBC1 domain family member	yes	no	0.408	0.4	0.280	2e-35
Q54VM3		1173	TBC1 domain family member	yes	no	0.472	0.321	0.234	7e-33
Q54TA5		1016	TBC1 domain family member	no	no	0.199	0.156	0.3	5e-18
Q9NVG8		400	TBC1 domain family member	no	no	0.132	0.265	0.305	4e-08
Q8R3D1		400	TBC1 domain family member	no	no	0.132	0.265	0.312	3e-07
Q9URY3		619	TBC domain-containing pro	yes	no	0.211	0.273	0.246	1e-06
Q08484		637	GTPase-activating protein	yes	no	0.144	0.180	0.275	1e-05
Q9NU19		505	TBC1 domain family member	no	no	0.110	0.174	0.294	0.0001
Q95LL3		505	TBC1 domain family member	N/A	no	0.110	0.174	0.294	0.0001

>sp\|Q92609\|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1	Back alignment and function desciption

 Score =  153 bits (387), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 188/416 (45%), Gaps = 93/416 (22%)

Query: 29  ANLRGVKWRINLGILPSS----YSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNS 84
           +  R + W++ L +LP       S IE+LR         Y+ I+   + +P   +     
Sbjct: 84  SRFRSICWKLFLCVLPQDKSQWISRIEELRAW-------YSNIKEIHITNP---RKVVGQ 133

Query: 85  PDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLL 144
            DL+++NPLSQ+  S W +FF+  EL  M++QD+ R +PE   +FQ    + +L  +L  
Sbjct: 134 QDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFC 192

Query: 145 WCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYN 204
           +   + +  Y+QGMHELLAP+++VLH                                  
Sbjct: 193 YARENEQLLYKQGMHELLAPIVFVLHC--------------------------------- 219

Query: 205 FDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF--M 262
            D + FL + E    S   S ++++V  L+PE        DAY    +L       F   
Sbjct: 220 -DHQAFLHASE----SAQPSEEMKTV--LNPEYLE----HDAYAVFSQLMETAEPWFSTF 268

Query: 263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHS 322
           EHD     + LM            FA     G    +  V + +    HLL   D  L+ 
Sbjct: 269 EHDGQKGKETLMTPIP--------FARPQDLGPTIAI--VTKVNQIQDHLLKKHDIELYM 318

Query: 323 HLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGIL 382
           HL  L + PQ +GLRW+R+LFGREF L DLL++WD +FA              G   G  
Sbjct: 319 HLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFAD-------------GLSLG-- 363

Query: 383 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 438
                 L+  + V+M+LYIR +L+++ N  TCL  L+++P   ++  +I K   L+
Sbjct: 364 ------LVDYIFVAMLLYIRDALISS-NYQTCLGLLMHYPFIGDVHSLILKALFLR 412

May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)

>sp\|Q80XQ2\|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2	Back alignment and function description

>sp\|Q54VM3\|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1	Back alignment and function description

>sp\|Q54TA5\|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1	Back alignment and function description

>sp\|Q9NVG8\|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3	Back alignment and function description

>sp\|Q8R3D1\|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1	Back alignment and function description

>sp\|Q9URY3\|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4	Back alignment and function description

>sp\|Q08484\|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1	Back alignment and function description

>sp\|Q9NU19\|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3	Back alignment and function description

>sp\|Q95LL3\|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		798
255573773		825	conserved hypothetical protein [Ricinus	0.933	0.903	0.699	0.0
118489839		823	unknown [Populus trichocarpa x Populus d	0.937	0.908	0.701	0.0
224090523		804	predicted protein [Populus trichocarpa]	0.923	0.916	0.695	0.0
225470672		830	PREDICTED: uncharacterized protein LOC10	0.934	0.898	0.690	0.0
356564825		832	PREDICTED: uncharacterized protein LOC10	0.944	0.906	0.628	0.0
449461172		830	PREDICTED: uncharacterized protein LOC10	0.932	0.896	0.644	0.0
283099385		813	microtubule-associated protein [Nicotian	0.934	0.917	0.629	0.0
356550728		823	PREDICTED: uncharacterized protein LOC10	0.922	0.894	0.613	0.0
224144337		729	predicted protein [Populus trichocarpa]	0.842	0.921	0.630	0.0
357449575		869	TBC1 domain family member-like protein [	0.946	0.868	0.6	0.0

>gi\|255573773\|ref\|XP_002527807.1\| conserved hypothetical protein [Ricinus communis] gi\|223532803\|gb\|EEF34579.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/753 (69%), Positives = 621/753 (82%), Gaps = 8/753 (1%)

Query: 30  NLRGVKWRINLGILPSSYSS-IEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLV 88
           NLRGV+WRI+LGILPSS SS I+DLR+VTADSRRRYA +RR LLVDP+  KDGSNSPDL 
Sbjct: 29  NLRGVQWRIDLGILPSSSSSTIDDLRKVTADSRRRYAGLRRRLLVDPNISKDGSNSPDLA 88

Query: 89  MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 148
           +DNPLSQNPDSTWGRFFR+AELEK VDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR
Sbjct: 89  IDNPLSQNPDSTWGRFFRNAELEKTVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 148

Query: 149 HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 208
           HPE GYRQGMHELLAPLLYVLHVDV RLS+VR ++EDHFTD+FDGLSFHE+DL YNFDFK
Sbjct: 149 HPECGYRQGMHELLAPLLYVLHVDVVRLSEVRKQYEDHFTDRFDGLSFHESDLIYNFDFK 208

Query: 209 KFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYC 268
           K+LDSMEDEIGSHGN+ K+RS+DEL+P+IQTIV LSDAYGAEGELGIVLS+KFMEHDAYC
Sbjct: 209 KYLDSMEDEIGSHGNATKLRSLDELEPQIQTIVLLSDAYGAEGELGIVLSDKFMEHDAYC 268

Query: 269 MFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELG 328
           MFDALM G+ G+V+M DFF+ S A GS + L PVIEAS+A+YHLLSV DSSLHSHLVELG
Sbjct: 269 MFDALMNGTPGAVAMTDFFSLSAASGSHSGLPPVIEASAALYHLLSVVDSSLHSHLVELG 328

Query: 329 VEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGA 388
           VEPQYF LRWLRVLFGREF L +LL+IWDEIFA+D++K++K +ED A S FGI SS RGA
Sbjct: 329 VEPQYFALRWLRVLFGREFILKNLLLIWDEIFAADNNKLDKGSEDAASSSFGIFSSQRGA 388

Query: 389 LIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSS 448
           LI+A+AVSM+L++RSSLLATENATTCLQRLLNFP NI+L+K+I K KSLQ LAL+A++SS
Sbjct: 389 LISAVAVSMILHLRSSLLATENATTCLQRLLNFPENIDLRKLIDKAKSLQTLALEASISS 448

Query: 449 SSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSG 508
            SPPF G YN +  MVVRG +L S+SISP+TPL +VPDSYWE KWR LHKAEEQ+H  +G
Sbjct: 449 FSPPFGGTYNHSKSMVVRGHTLSSDSISPKTPLTMVPDSYWEEKWRVLHKAEEQKH-RTG 507

Query: 509 KQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSE 568
           KQN T KK W EKV+L LSRT SDP+P  V NG +  + S+RR LLEDLS+ELGF++D+E
Sbjct: 508 KQNSTPKKGWSEKVRLTLSRTASDPSPAKVGNGKRVQKPSVRRRLLEDLSRELGFDDDTE 567

Query: 569 KDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVS 628
           K    EVS + D    E E + +D V ++F  T + R  +GN GSEE+SS+FSDP+SP+S
Sbjct: 568 KADCSEVSDQNDNICAEVEGEDRDGVCKDF--TGEGRCSSGNTGSEENSSLFSDPSSPLS 625

Query: 629 GANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKS- 687
           GA+++E+DSEKSS+ASNSS+DE D    T  E   LP+S  PDD   DS SNN++  KS 
Sbjct: 626 GADNHEHDSEKSSIASNSSIDETDDHPKTFQEDATLPISHLPDDAPLDSGSNNEATGKSV 685

Query: 688 --QTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGS 745
                RK+LSGKFQWFWKFGR++  EETSE G  A E+  SA++  +QS S   +S DGS
Sbjct: 686 VGTKERKLLSGKFQWFWKFGRSTVDEETSEGGRGAVESTNSASDAGSQS-STICTSADGS 744

Query: 746 CKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQV 778
               +S KG+ +DQNVMGTL+NLG SMLEHIQV
Sbjct: 745 SNLYTSGKGDVLDQNVMGTLRNLGHSMLEHIQV 777

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|118489839\|gb\|ABK96719.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|224090523\|ref\|XP_002309012.1\| predicted protein [Populus trichocarpa] gi\|222854988\|gb\|EEE92535.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225470672\|ref\|XP_002269494.1\| PREDICTED: uncharacterized protein LOC100250355 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356564825\|ref\|XP_003550648.1\| PREDICTED: uncharacterized protein LOC100818700 [Glycine max]	Back alignment and taxonomy information

>gi\|449461172\|ref\|XP_004148316.1\| PREDICTED: uncharacterized protein LOC101219111 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|283099385\|gb\|ADB08056.1\| microtubule-associated protein [Nicotiana benthamiana]	Back alignment and taxonomy information

>gi\|356550728\|ref\|XP_003543736.1\| PREDICTED: uncharacterized protein LOC100816501 [Glycine max]	Back alignment and taxonomy information

>gi\|224144337\|ref\|XP_002325266.1\| predicted protein [Populus trichocarpa] gi\|222866700\|gb\|EEF03831.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357449575\|ref\|XP_003595064.1\| TBC1 domain family member-like protein [Medicago truncatula] gi\|355484112\|gb\|AES65315.1\| TBC1 domain family member-like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VI000579	hypothetical protein (804 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		798
smart00164		216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	6e-15
smart00164		216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	4e-14
pfam00566		206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	7e-14
pfam00566		206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	2e-12
COG5210		496	COG5210, COG5210, GTPase-activating protein [Gener	3e-05
COG5210		496	COG5210, COG5210, GTPase-activating protein [Gener	4e-05

>gnl\|CDD\|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 112 KMVDQDLSRLYPEHGSYFQTPGCQG--MLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL 169
             +++DL R +PEH S+FQ     G   LRR+L  + L +PE GY QGM+ L APLL V+
Sbjct: 48  HQIEKDLRRTFPEH-SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106

Query: 170 H 170
            
Sbjct: 107 E 107

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl\|CDD\|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

>gnl\|CDD\|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	Back alignment and domain information

>gnl\|CDD\|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	Back alignment and domain information

>gnl\|CDD\|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		798
KOG1091		625	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567		370	consensus GTPase-activating protein [General funct	100.0
KOG1092		484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
smart00164		199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
PF00566		214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	100.0
KOG2058		436	consensus Ypt/Rab GTPase activating protein [Intra	100.0
COG5210		496	GTPase-activating protein [General function predic	99.97
KOG2224		781	consensus Uncharacterized conserved protein, conta	99.96
KOG1093		725	consensus Predicted protein kinase (contains TBC a	99.95
KOG2223		586	consensus Uncharacterized conserved protein, conta	99.94
KOG2222		848	consensus Uncharacterized conserved protein, conta	99.92
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	99.9
KOG2595		395	consensus Predicted GTPase activator protein [Sign	99.83
KOG4347		671	consensus GTPase-activating protein VRP [General f	99.81
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.81
KOG1102		397	consensus Rab6 GTPase activator GAPCenA and relate	99.79
KOG2221		267	consensus PDZ-domain interacting protein EPI64, co	99.45
KOG3636		669	consensus Uncharacterized conserved protein, conta	99.28
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	98.9
KOG1648		813	consensus Uncharacterized conserved protein, conta	97.81
KOG2801		559	consensus Probable Rab-GAPs [Intracellular traffic	97.12
PF14961		1296	BROMI: Broad-minded protein	96.65

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=6.1e-100  Score=839.19  Aligned_cols=560  Identities=51%  Similarity=0.800  Sum_probs=480.1

Q ss_pred             cCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 003745           25 SGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRF  104 (798)
Q Consensus        25 ~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~  104 (798)
                      +.|+..+|+++||++|||+|.+.++|   ...+++.|..|..+|+++++|||..+++ +++|+.++|||+++++|.|++|
T Consensus        23 dlr~s~~Rgv~Wrl~L~vLp~~~ss~---id~~~~~ra~~r~~r~~~L~dPh~~k~~-~s~d~~idnPLSq~~~S~W~rf   98 (625)
T KOG1091|consen   23 DLRFSNLRGVRWRLLLGVLPSENSSW---IDNLRRLRANYRRLRRRLLIDPHNLKEN-HSPDLPIDNPLSQNPQSVWNRF   98 (625)
T ss_pred             chhhhhhhhHHHHHhheecCCCchhH---HHHHHHHhhhhhccccccccCccccccc-cCCCcccCCccccCCCchhhhh
Confidence            55789999999999999999997763   3446678888999999999999999877 8899999999999999999999


Q ss_pred             CCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccc
Q 003745          105 FRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHE  184 (798)
Q Consensus       105 F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~ye  184 (798)
                      |+|+|+++.|++||+||||+++.|||.+.+|.||+|||++||+.||.+||+||||||+||++||++.|.++|.++++.  
T Consensus        99 F~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~--  176 (625)
T KOG1091|consen   99 FRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSES--  176 (625)
T ss_pred             cCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHh--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999764  


Q ss_pred             cccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhH
Q 003745          185 DHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH  264 (798)
Q Consensus       185 d~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~Ea  264 (798)
                           +|+.+.|.|.|.+|+|+|+++.+                  +  .++.|.+|.++|+||.+++.++++++++||+
T Consensus       177 -----~~~~l~f~E~d~iy~~~y~k~d~------------------d--n~~lqs~lmls~~~~~e~e~g~~~~e~~ie~  231 (625)
T KOG1091|consen  177 -----LFDKLGFEERDVIYNFLYLKTDL------------------D--NTELQSVLMLSDEYGYEEELGIVLSEKLIEH  231 (625)
T ss_pred             -----hhhhcCcchhhhhhhHHHHhhhc------------------c--chhHHHHHHhhhccccccCcceecCcccCCc
Confidence                 68889999999999999998642                  1  1678999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhC
Q 003745          265 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFG  344 (798)
Q Consensus       265 DAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFa  344 (798)
                      |+|++|+++|..                      +|++.+++..++++|..+|+.||.||.++||+||||++||+|+||+
T Consensus       232 day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFG  289 (625)
T KOG1091|consen  232 DAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFG  289 (625)
T ss_pred             Ccccchhhhccc----------------------chhHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence            999999999873                      6789999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHH-HHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCC
Q 003745          345 REFSLGDLLIIWD-EIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV  423 (798)
Q Consensus       345 REFpL~dlLrIWD-~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~  423 (798)
                      |||||.++|.||| ++|+                     ++||+.++.||+||||+++|+.||..++ ..||++|+|||.
T Consensus       290 REfpL~dLLiVWD~~l~~---------------------d~pr~~Lv~~m~VsmLL~IRd~Llss~~-~tcL~~Lm~yP~  347 (625)
T KOG1091|consen  290 REFPLQDLLIVWDHVLIF---------------------DSPRGILVACMFVSMLLYIRDSLLSSEY-QTCLQYLMNYPE  347 (625)
T ss_pred             chhHHHHHHHHhhhhhhc---------------------cCchHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHhcCCC
Confidence            9999999999999 5554                     4578899999999999999999999998 459999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCceecccCCCCCCCCCCCCCCCCCCchhhhHHHHHhHHHHhh
Q 003745          424 NINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQR  503 (798)
Q Consensus       424 ~iDv~~LI~kA~~L~~~~~~~~~s~~~~~~~~~~~~s~~~~~r~~~~~~~~~~p~~p~~~~~~~~we~~~r~l~~~~~~~  503 (798)
                      ++|++++|++|+.|+.                +|.+++.+++|.++.   +.++.+|+.+.|.+||+.+||+++++..+.
T Consensus       348 ~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~~~s~~~isp~~~w~~k~r~~~~~nse~  408 (625)
T KOG1091|consen  348 IIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFSDLSPVGISPCSYWEGKWRVLPRANSEE  408 (625)
T ss_pred             cCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---cccccccccCChhhhcccccCCCccccccc
Confidence            9999999999999988                344455667887765   678889999999999999999999999887


Q ss_pred             cccCCCCCcc-ccchhhhhhhhcccccccCCCCcccCCCCccCc-chhhhhhHHHHhhhhCCcccccccccccccccCCC
Q 003745          504 HDSSGKQNQT-QKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQ  581 (798)
Q Consensus       504 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (798)
                      ...+..+.++ +|+.|..   ..+.|+++||++     |++..| +++.|.++++++++++.                  
T Consensus       409 ~~~~~sps~~~k~~~~~~---~~~~r~~~D~S~-----~~~~~k~~~~~R~~~~~~~~~l~t------------------  462 (625)
T KOG1091|consen  409 SSMKISPSPIIKKKPVLQ---MKLARLTIDPSR-----GSSEAKLSSSPRVLLLDLKEQLST------------------  462 (625)
T ss_pred             cccccCCCcccccCcHHH---HHHHHhhcCCcc-----ccccccCCcchhhhhcccccccCC------------------
Confidence            7666666554 5888876   446699999999     555555 78999999999988851                  


Q ss_pred             CchhhhhhhcccccccccccCCcccccCCCCCCCCcccccCCCCCCCCCCCCCCccccccccc-CCCcccccccCCCC--
Q 003745          582 PSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVAS-NSSVDENDRQSHTM--  658 (798)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--  658 (798)
                                                               |.+|...+|      +.+.|.+ +.|..+.+..++++  
T Consensus       463 -----------------------------------------p~~~d~~~~------~~s~v~~~q~s~lq~~l~~kd~~~  495 (625)
T KOG1091|consen  463 -----------------------------------------PLSPDEDAN------EASTVSSIQPSKLQEDLSTKDQVT  495 (625)
T ss_pred             -----------------------------------------CCCcchhhh------hhhhhhhcchHHHHhhhcccchhh
Confidence                                                     333323332      3445554 77777777777654  


Q ss_pred             -CCCCCCCCCCCCCCcccCCCCCCcccccchhhhccccccchhhhhcCCCCccccccccCCcccccccccccccCCCCCC
Q 003745          659 -PESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSK  737 (798)
Q Consensus       659 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (798)
                       +.+.||+|+.++.+..          ..-.-++|+++|+||||||+||+..+|||++...                   
T Consensus       496 ~~~~~~l~i~~~~~~~~----------~~~~~~~k~~~~~~q~~~~l~~~l~~~etk~~~~-------------------  546 (625)
T KOG1091|consen  496 SQVNGPLEISRTLDGKS----------VLITKEDKLLSGLFQRLRKLGRTLSAEETKKLNT-------------------  546 (625)
T ss_pred             hhcCCcccccccCCcch----------hhhHHHHHhhhHHHHHHHHhCchhcccccccCCC-------------------
Confidence             5689999999876610          0011178999999999999999999999822211                   


Q ss_pred             CCCCCCCCCCCCCC-CCCcccchhHHHhHHhhhHHHHHHHHHHHHHHhhhh
Q 003745          738 GASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLIC  787 (798)
Q Consensus       738 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (798)
                             -|++..+ ...++.||+.+.|+||+||+|++||++||+||+|..
T Consensus       547 -------~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p  590 (625)
T KOG1091|consen  547 -------GCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEP  590 (625)
T ss_pred             -------CCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCc
Confidence                   1333222 223377999999999999999999999999999996

>KOG4567 consensus GTPase-activating protein [General function prediction only]	Back alignment and domain information

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []	Back alignment and domain information

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5210 GTPase-activating protein [General function prediction only]	Back alignment and domain information

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]	Back alignment and domain information

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]	Back alignment and domain information

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]	Back alignment and domain information

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14961 BROMI: Broad-minded protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		798
1fkm_A		396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		3e-06
2g77_A		410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-06
3dzx_A		346	Crystal Structure Of The Rabgap Domain Of Human Tbc		5e-05
2qfz_A		345	Crystal Structure Of Human Tbc1 Domain Family Membe		4e-04

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Back alignment and structure

Iteration: 1

Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 34/136 (25%) Query: 32 RGVKWRINLGILPSSYSSIED-LRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMD 90 R V W++ +G LP + E L+R R+ Y + +H D H S D+ Sbjct: 39 RPVVWKLLIGYLPVNTKRQEGFLQR----KRKEYRDSLKHTFSDQH-------SRDI--- 84 Query: 91 NPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHP 150 TW + ++ D+ R P H +Q Q L+RIL LW +RHP Sbjct: 85 --------PTWHQ----------IEIDIPRTNP-HIPLYQFKSVQNSLQRILYLWAIRHP 125 Query: 151 EFGYRQGMHELLAPLL 166 GY QG+++L+ P Sbjct: 126 ASGYVQGINDLVTPFF 141

PyMOL of 1fkm

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Back alignment and structure

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Back alignment and structure

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		798
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	8e-22
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	9e-21
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	2e-21
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	8e-21
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	1e-09
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	1e-06
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	8e-09
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	9e-07
2qq8_A		334	TBC1 domain family member 14; structural genomics	9e-09
2qq8_A		334	TBC1 domain family member 14; structural genomics	3e-07

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

 Score = 97.8 bits (243), Expect = 8e-22
 Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 40/231 (17%)

Query: 260 KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSS 319
             +E D +     L+        + D + H            ++     +  L+   D+ 
Sbjct: 172 TDLEADTFWCLTKLLEQ------ITDNYIHGQP--------GILRQVKNLSQLVKRIDAD 217

Query: 320 LHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGF 379
           L++H     VE   F  RW+  L  REF +G ++ +WD   +                  
Sbjct: 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET---------------- 261

Query: 380 GILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQA 439
                 +    +    S  +    +        + +    +F         +    +++ 
Sbjct: 262 -----SQEVTSSYSMSSNDIKPPVTPT-EPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315

Query: 440 LALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPR-TPLNVVPDSYW 489
                 +  SS     V+     ++     L         T L   P   W
Sbjct: 316 ---SGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDW 363

PyMOL of 1fkm

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		798
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
2qq8_A		334	TBC1 domain family member 14; structural genomics	100.0
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
4hl4_A		292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	100.0

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*	Back alignment and structure

Probab=100.00  E-value=9.3e-49  Score=428.96  Aligned_cols=311  Identities=22%  Similarity=0.378  Sum_probs=237.6

Q ss_pred             ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745           24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR  103 (798)
Q Consensus        24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~  103 (798)
                      ++|.++.+|+.+|+++||++|.+.+   +|...++++|..|..++++++.+.                            
T Consensus        31 ~~GIP~~lR~~vW~~LLg~~~~~~~---~~~~~l~~~~~~Y~~l~~~~~~~~----------------------------   79 (396)
T 1fkm_A           31 WNGIPKIHRPVVWKLLIGYLPVNTK---RQEGFLQRKRKEYRDSLKHTFSDQ----------------------------   79 (396)
T ss_dssp             TTCCCGGGHHHHHHHHTTCSCSBGG---GHHHHHHHHHHHHHHHHHHTSSSS----------------------------
T ss_pred             HcCCCHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHHHHHHHHHHHhhcc----------------------------
Confidence            3577889999999999999998764   355677889999999999977420                            


Q ss_pred             cCCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccc
Q 003745          104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEH  183 (798)
Q Consensus       104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~y  183 (798)
                      ...+.++.++|++||.||+|++ .||+.+.++++|+|||++||++||++|||||||+|+||||+|+..+......+    
T Consensus        80 ~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~----  154 (396)
T 1fkm_A           80 HSRDIPTWHQIEIDIPRTNPHI-PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI----  154 (396)
T ss_dssp             CSTHHHHHHHHHHHGGGSSTTS-GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG----
T ss_pred             CcccHHHHHHHHHHhhhhCCCc-ccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc----
Confidence            0134578899999999999999 99999999999999999999999999999999999999999986431000000    


Q ss_pred             ccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCC-CChhhHHHHhhccccccccchhhhcccchh
Q 003745          184 EDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDE-LDPEIQTIVQLSDAYGAEGELGIVLSEKFM  262 (798)
Q Consensus       184 ed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~e-ld~~~~~i~~lsd~ygaegelg~~Ls~k~~  262 (798)
                           +..++           ++                       +++ ++.+                     ...++
T Consensus       155 -----~~~~~-----------~~-----------------------~~~~l~~~---------------------~~~~~  174 (396)
T 1fkm_A          155 -----DDVEI-----------KD-----------------------PSTYMVDE---------------------QITDL  174 (396)
T ss_dssp             -----GGTTT-----------SC-----------------------GGGTCCHH---------------------HHHHH
T ss_pred             -----ccccc-----------cc-----------------------hhhccchh---------------------hhhhh
Confidence                 00000           00                       000 1100                     11346


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHh
Q 003745          263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL  342 (798)
Q Consensus       263 EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tL  342 (798)
                      |+||||||.+||..+      .++|.+        +++++...+..|..||+.+||+||+||.++||+|.+|++|||+||
T Consensus       175 E~daF~~f~~lm~~~------~~~f~~--------~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L  240 (396)
T 1fkm_A          175 EADTFWCLTKLLEQI------TDNYIH--------GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL  240 (396)
T ss_dssp             HHHHHHHHHHHHGGG------GGGSST--------TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH------HHHHhh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            999999999999974      477875        467888899999999999999999999999999999999999999


Q ss_pred             hCcCCChHHHHHHHHHHhhcCCCCC-----------CC--CCCCCC--------------------------C-CCcccc
Q 003745          343 FGREFSLGDLLIIWDEIFASDSSKV-----------NK--DTEDDA--------------------------G-SGFGIL  382 (798)
Q Consensus       343 FaREFpL~dlLrIWD~Ifa~g~~~~-----------~~--~~e~~~--------------------------~-~~F~i~  382 (798)
                      |+|+||+++++||||.||++|....           +.  ......                          + ..+.+.
T Consensus       241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T 1fkm_A          241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR  320 (396)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred             HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence            9999999999999999999871000           00  000000                          0 001111


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHhhcC
Q 003745          383 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDAN  445 (798)
Q Consensus       383 ~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~----iDv~~LI~kA~~L~~~~~~~~  445 (798)
                      .++...|++|+|+|||..+|+.||+++ ++++|++|+++|..    .|++.||.+|..++..+..++
T Consensus       321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~d-f~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~  386 (396)
T 1fkm_A          321 QSSLNEFHVFVCAAFLIKWSDQLMEMD-FQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT  386 (396)
T ss_dssp             --CHHHHHHHHHHHHHHHTHHHHTTCC-HHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence            112347999999999999999999977 58999999999974    599999999999999997654

PyMOL of 1fkm

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A	Back alignment and structure

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		798
d1fkma1		194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	9e-17
d1fkma2		188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	2e-14

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194	Back information, alignment and structure


class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (189), Expect = 9e-17
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 36/195 (18%)

Query: 24  RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSN 83
            +G     R V W++ +G LP              +++R+   ++R              
Sbjct: 30  WNGIPKIHRPVVWKLLIGYLP-------------VNTKRQEGFLQRKRKEYRDSL----- 71

Query: 84  SPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILL 143
                          +   +  R       ++ D+ R  P    Y      Q  L+RIL 
Sbjct: 72  -------------KHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV-QNSLQRILY 117

Query: 144 LWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKF--DGLSFHENDL 201
           LW +RHP  GY QG+++L+ P       +    SQ+ +      +     + ++  E D 
Sbjct: 118 LWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD- 176

Query: 202 TYNFDFKKFLDSMED 216
           T+ +   K L+ + D
Sbjct: 177 TF-WCLTKLLEQITD 190

PyMOL of d1fkma1

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		798
d1fkma1		194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.95
d1fkma2		188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.87

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=242.00  Aligned_cols=117  Identities=27%  Similarity=0.519  Sum_probs=102.1

Q ss_pred             ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745           24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR  103 (798)
Q Consensus        24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~  103 (798)
                      ++|.++.+|+.+|+++||++|.+.+   +|...+.++|+.|..++.......                            
T Consensus        30 ~~Gip~~lR~~vW~~llg~~~~~~~---~~~~~~~~~~~~y~~~~~~~~~~~----------------------------   78 (194)
T d1fkma1          30 WNGIPKIHRPVVWKLLIGYLPVNTK---RQEGFLQRKRKEYRDSLKHTFSDQ----------------------------   78 (194)
T ss_dssp             TTCCCGGGHHHHHHHHTTCSCSBGG---GHHHHHHHHHHHHHHHHHHTSSSS----------------------------
T ss_pred             HcCCChHHHHHHHHHHHhhcCCchh---hHHHHHHHHhhhhhhhhhhhhhcc----------------------------
Confidence            4788999999999999999998765   456678899999999887755321                            


Q ss_pred             cCCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhh
Q 003745          104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVD  172 (798)
Q Consensus       104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D  172 (798)
                      ...+.++.++|++||.||+|++ .+|+.+.++++|+|||.+||.+||++|||||||+|+||||+++..+
T Consensus        79 ~~~~~~~~~~I~~Dv~RT~~~~-~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~  146 (194)
T d1fkma1          79 HSRDIPTWHQIEIDIPRTNPHI-PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE  146 (194)
T ss_dssp             CSTHHHHHHHHHHHGGGSSTTS-GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGG
T ss_pred             cccchHHHHHHHHHHHhcCCcc-cccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhh
Confidence            2235678899999999999999 9999999999999999999999999999999999999999999764

PyMOL of d1fkma1

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure